BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1289
         (87 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4F0A|A Chain A, Crystal Structure Of Xwnt8 In Complex With The
          Cysteine-Rich Domain Of Frizzled 8
          Length = 132

 Score = 35.0 bits (79), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 20 MCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNG 79
          +C+G+  Y+ T  PN     +       +  F  + E +CSP  K FLCS+  P C  + 
Sbjct: 15 LCKGIG-YNYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDY 73

Query: 80 QNILPP 85
          +  LPP
Sbjct: 74 KKPLPP 79


>pdb|1IJY|A Chain A, Crystal Structure Of The Cysteine-Rich Domain Of Mouse
          Frizzled 8 (Mfz8)
 pdb|1IJY|B Chain B, Crystal Structure Of The Cysteine-Rich Domain Of Mouse
          Frizzled 8 (Mfz8)
          Length = 130

 Score = 35.0 bits (79), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 20 MCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNG 79
          +C+G+  Y+ T  PN     +       +  F  + E +CSP  K FLCS+  P C  + 
Sbjct: 17 LCKGIG-YEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDY 75

Query: 80 QNILPP 85
          +  LPP
Sbjct: 76 KKPLPP 81


>pdb|1IJX|A Chain A, Crystal Structure Of The Cysteine-Rich Domain Of
          Secreted Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|B Chain B, Crystal Structure Of The Cysteine-Rich Domain Of
          Secreted Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|C Chain C, Crystal Structure Of The Cysteine-Rich Domain Of
          Secreted Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|D Chain D, Crystal Structure Of The Cysteine-Rich Domain Of
          Secreted Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|E Chain E, Crystal Structure Of The Cysteine-Rich Domain Of
          Secreted Frizzled- Related Protein 3 (Sfrp-3;fzb)
 pdb|1IJX|F Chain F, Crystal Structure Of The Cysteine-Rich Domain Of
          Secreted Frizzled- Related Protein 3 (Sfrp-3;fzb)
          Length = 127

 Score = 32.3 bits (72), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 9  GQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLC 68
          G   C    + +C+ + P+++T  PN    ++ ++   A+  FE +  + CSP    FLC
Sbjct: 1  GSAACEPVRIPLCKSL-PWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLC 59

Query: 69 SLLEPECQPNGQN 81
          ++  P C  + Q+
Sbjct: 60 AMYAPICTIDFQH 72


>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
            Domain
 pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
            Domain
          Length = 3245

 Score = 26.6 bits (57), Expect = 3.9,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 26   PYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQ----PNGQN 81
            P  +   P      +L+S   A P FE+++ +  S    + L    +  C+    P+G+ 
Sbjct: 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET 1365

Query: 82   ILPP 85
            +L P
Sbjct: 1366 VLRP 1369


>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
            Domain
 pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
            Domain
          Length = 3367

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 26   PYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQ----PNGQN 81
            P  +   P      +L+S   A P FE+++ +  S    + L    +  C+    P+G+ 
Sbjct: 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET 1365

Query: 82   ILPP 85
            +L P
Sbjct: 1366 VLRP 1369


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,388,459
Number of Sequences: 62578
Number of extensions: 67095
Number of successful extensions: 99
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 5
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)