Query psy1289
Match_columns 87
No_of_seqs 110 out of 435
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 22:22:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1289.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1289hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07463 CRD_FZ9 Cysteine-rich 100.0 4.8E-34 1.1E-38 189.2 5.1 78 9-87 1-78 (127)
2 cd07441 CRD_SFRP3 Cysteine-ric 100.0 4.3E-34 9.3E-39 189.3 4.6 77 10-87 1-78 (126)
3 cd07442 CRD_SFRP4 Cysteine-ric 100.0 6.1E-34 1.3E-38 188.8 4.7 77 10-87 2-79 (127)
4 cd07462 CRD_FZ10 Cysteine-rich 100.0 1.2E-33 2.6E-38 187.3 5.2 77 10-87 2-78 (127)
5 cd07460 CRD_FZ5 Cysteine-rich 100.0 1.3E-33 2.8E-38 187.2 5.1 77 10-87 2-78 (127)
6 cd07454 CRD_LIN_17 Cysteine-ri 100.0 1.5E-33 3.3E-38 186.2 5.1 77 10-87 2-78 (124)
7 cd07461 CRD_FZ8 Cysteine-rich 100.0 1.4E-33 3E-38 186.6 4.8 77 10-87 2-78 (125)
8 cd07466 CRD_FZ7 Cysteine-rich 100.0 2E-33 4.4E-38 185.8 4.6 76 10-87 2-77 (125)
9 cd07457 CRD_FZ9_like Cysteine- 100.0 2E-33 4.2E-38 185.0 4.5 76 11-87 1-76 (121)
10 cd07456 CRD_FZ5_like Cysteine- 100.0 3.1E-33 6.6E-38 183.8 5.0 75 12-87 1-75 (120)
11 cd07465 CRD_FZ1 Cysteine-rich 100.0 2.8E-33 6.2E-38 185.6 4.8 76 10-87 2-77 (127)
12 cd07464 CRD_FZ2 Cysteine-rich 100.0 3.3E-33 7.2E-38 185.2 4.7 76 10-87 2-77 (127)
13 cd07888 CRD_corin_2 One of two 100.0 4.9E-33 1.1E-37 183.3 4.7 75 12-87 1-77 (122)
14 cd07458 CRD_FZ1_like Cysteine- 100.0 4.8E-33 1E-37 182.7 4.5 75 11-87 1-75 (119)
15 cd07448 CRD_FZ4 Cysteine-rich 100.0 6.2E-33 1.3E-37 183.7 4.8 76 11-87 2-77 (126)
16 cd07449 CRD_FZ3 Cysteine-rich 100.0 8.5E-33 1.8E-37 183.3 4.5 75 11-87 3-77 (127)
17 cd07446 CRD_SFRP2 Cysteine-ric 100.0 2.5E-32 5.4E-37 181.3 5.6 77 10-87 2-80 (128)
18 cd07455 CRD_Collagen_XVIII Cys 100.0 2.2E-32 4.7E-37 180.5 5.2 77 10-87 2-80 (123)
19 cd07450 CRD_FZ6 Cysteine-rich 100.0 4.2E-32 9.2E-37 179.9 4.6 75 11-87 3-77 (127)
20 cd07445 CRD_corin_1 One of two 100.0 1.3E-31 2.9E-36 178.0 4.4 76 10-87 2-79 (130)
21 cd07447 CRD_Carboxypeptidase_Z 100.0 3.2E-31 7E-36 175.9 4.8 74 11-87 2-80 (128)
22 smart00063 FRI Frizzled. Droso 100.0 3.4E-31 7.3E-36 172.3 4.4 73 13-87 1-73 (113)
23 cd07444 CRD_SFRP5 Cysteine-ric 100.0 5.5E-31 1.2E-35 174.6 5.4 76 8-87 2-79 (127)
24 cd07443 CRD_SFRP1 Cysteine-ric 100.0 1.3E-30 2.9E-35 172.2 5.1 76 8-87 2-79 (124)
25 cd07452 CRD_sizzled Cysteine-r 100.0 2.7E-30 5.8E-35 173.8 5.4 77 7-87 3-81 (141)
26 cd07453 CRD_crescent Cysteine- 100.0 4E-30 8.6E-35 172.0 4.5 73 11-87 1-75 (135)
27 cd07451 CRD_SMO Cysteine-rich 100.0 4.5E-29 9.8E-34 166.4 4.5 76 10-87 2-79 (132)
28 KOG3577|consensus 99.9 3.5E-26 7.7E-31 180.0 4.1 77 10-87 40-116 (556)
29 cd07066 CRD_FZ CRD_domain cyst 99.9 2.5E-25 5.4E-30 143.8 4.1 75 12-87 1-75 (119)
30 PF01392 Fz: Fz domain; Inter 99.9 4.6E-23 1E-27 131.1 2.7 74 13-87 1-75 (116)
31 cd07459 CRD_TK_ROR_like Cystei 97.5 4.2E-05 9.1E-10 51.0 1.2 77 11-87 1-82 (135)
32 cd07467 CRD_TK_ROR1 Cysteine-r 94.9 0.011 2.4E-07 40.1 0.9 69 10-81 2-76 (142)
33 cd07468 CRD_TK_ROR2 Cysteine-r 93.8 0.026 5.5E-07 38.2 0.9 68 10-80 2-75 (140)
34 cd07469 CRD_TK_ROR_related Cys 92.6 0.062 1.3E-06 36.6 1.3 77 10-87 2-85 (147)
35 PF12447 DUF3683: Protein of u 51.2 7.4 0.00016 25.6 0.8 9 25-33 7-15 (115)
36 PRK13716 leader peptide RepL; 50.7 5.1 0.00011 19.3 -0.0 9 64-72 7-15 (26)
37 PF12929 Mid1: Stretch-activat 50.6 17 0.00037 28.7 2.9 68 10-78 230-322 (427)
38 PF08048 RepA1_leader: Tap Rep 38.1 8.3 0.00018 18.6 -0.4 10 64-73 7-16 (25)
39 TIGR03475 tap_IncFII_lead RepA 36.1 9.8 0.00021 18.5 -0.3 10 64-73 7-16 (26)
No 1
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz9 may play a signaling role in lymphoid development and maturation, particularly at points where B cells undergo self-renewal prior to further differentiation.
Probab=100.00 E-value=4.8e-34 Score=189.22 Aligned_cols=78 Identities=29% Similarity=0.546 Sum_probs=74.6
Q ss_pred CCCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 9 GQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 9 ~~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
++++||||++++|+| ||||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|+++.+++++|||
T Consensus 1 ~~~~CepI~~~~C~~-l~Yn~T~~PN~lgh~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCR 78 (127)
T cd07463 1 RAAKCQPVVIPMCRG-IGYNLTRMPNFLGHDSQREAAIKLNEFAPLVEYGCHVHLRFFLCSLYAPMCTDQVSTSIPACR 78 (127)
T ss_pred CCCccccCChhhhCC-CCcCcccCCcccCCcCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccccccCCCCCCcCCccH
Confidence 367999999999999 799999999999999999999999999999999999999999999999999987668899998
No 2
>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), which plays important roles in embryogenesis and postnatal development as an antagonist of Wnt proteins, key players in a number of fundamental cellular processes. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled proteins (Fz), thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP3 regulates Wnt signaling activity in bone development and homeostasis. It is also involved in the control of planar cell polarity.
Probab=100.00 E-value=4.3e-34 Score=189.26 Aligned_cols=77 Identities=25% Similarity=0.528 Sum_probs=73.1
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCC-CCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNG-QNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~-~~~i~PCR 87 (87)
+++||||++++|+| ||||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+.+. +++++|||
T Consensus 1 ~a~CepI~~~~C~~-l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCR 78 (126)
T cd07441 1 AASCEPVRIPMCKS-MPWNMTKMPNHLHHSTQANAVLAIEQFEGLLGTQCSPDLLFFLCAMYAPICTIDFQHEPIKPCK 78 (126)
T ss_pred CCcccccChhhhCC-CCcCcccCCcccCCCCHHHHHHHHHHHHHHhcCCCCccchhHHhhccCcccCCCCCCCcCCccH
Confidence 36899999999999 8999999999999999999999999999999999999999999999999998763 58899998
No 3
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 4 (SFRP4), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=100.00 E-value=6.1e-34 Score=188.75 Aligned_cols=77 Identities=26% Similarity=0.526 Sum_probs=73.3
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCC-CCCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPN-GQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~-~~~~i~PCR 87 (87)
..+||+|++++|+| ||||.|+|||++||++|+||+.++..|.+|++++||+++++||||+|+|+|+.+ .+++++|||
T Consensus 2 ~a~CepI~i~~C~~-l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCR 79 (127)
T cd07442 2 GAPCEAVRIPMCRH-MPWNITRMPNHLHHSTQENAVLAIEQYEELVDTGCSPVLPFFLCAMYAPICTLEFLYDPIKPCR 79 (127)
T ss_pred CCcccccChhhhCC-CCcCcccCcCccCCCCHHHHHHHHHHHHHHHcCCCCcchHHHHHhhcCCccCCCCCCCcCCccH
Confidence 57999999999999 899999999999999999999999999999999999999999999999999875 357899998
No 4
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 10 (Fz10) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. The cellular functon of Fz10 is unknown.
Probab=100.00 E-value=1.2e-33 Score=187.32 Aligned_cols=77 Identities=27% Similarity=0.542 Sum_probs=73.9
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
.++|+||++++|+| ||||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|+.+.+++++|||
T Consensus 2 ~~~C~pI~~~~C~~-l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCR 78 (127)
T cd07462 2 EGRCQPIEIPMCKD-IGYNMTRMPNLMGHENQREAAIQLHEFAPLVEYGCHSHLKFFLCSLYAPMCTEQVSTPIPACR 78 (127)
T ss_pred CCeeeecChhhhCC-CCcCceeCCcccCCcCHHHHHHHHHHHHHHhccCCChhhHHHHHhccccccCCCCCCcCCccH
Confidence 47999999999999 799999999999999999999999999999999999999999999999999987668899998
No 5
>cd07460 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 5 (Fz5) receptor.proteins. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz5 plays critical regulating roles in the yolk sac and placental angiogenesis, in the maturation of the Paneth cell phenotype, in governing the neural potential of progenitors in the developing retina, and in neuronal s
Probab=100.00 E-value=1.3e-33 Score=187.21 Aligned_cols=77 Identities=30% Similarity=0.571 Sum_probs=73.9
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
+.+||||++++|+| ||||.|+|||++||++|+||+.++++|.+|++++||+++++||||+|+|+|+++.+++++|||
T Consensus 2 ~~~CepI~~~~C~~-l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCR 78 (127)
T cd07460 2 ALVCQEITVPMCKG-IGYNLTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTPICLPDYRKPLPPCR 78 (127)
T ss_pred CCEecccChhhhCC-CCCCcccCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCccccCCCCCcCCccH
Confidence 57899999999999 799999999999999999999999999999999999999999999999999887668899998
No 6
>cd07454 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17. A cysteine-rich domain (CRD) is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact with the
Probab=100.00 E-value=1.5e-33 Score=186.18 Aligned_cols=77 Identities=22% Similarity=0.525 Sum_probs=73.9
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
.++|+||++++|+| ||||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|+++.+++++|||
T Consensus 2 ~~~C~Pi~~~~C~~-l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCR 78 (124)
T cd07454 2 KGKCIPIDIELCKD-LPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHFFICSVFAPMCPIGMPQAVTSCK 78 (124)
T ss_pred CCccccCChhhhCC-CCcCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHhhcccccccCCCCCCcCCCCh
Confidence 47899999999999 799999999999999999999999999999999999999999999999999987778999998
No 7
>cd07461 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 8 (Fz8) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 8 (Fz8) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz8 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=100.00 E-value=1.4e-33 Score=186.59 Aligned_cols=77 Identities=30% Similarity=0.543 Sum_probs=74.1
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
..+|++|++++|+| ||||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+++.+++++|||
T Consensus 2 ~~~C~pI~~~~C~~-l~Yn~T~~PN~l~H~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~~~~~~i~PCR 78 (125)
T cd07461 2 ELQCQEITVPLCKG-IGYNYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCR 78 (125)
T ss_pred CCcccccCHHHhCC-CCCCcccCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCcccCCCCCCcCCccH
Confidence 57999999999999 799999999999999999999999999999999999999999999999999987778999998
No 8
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 7 (Fz7) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=99.98 E-value=2e-33 Score=185.82 Aligned_cols=76 Identities=28% Similarity=0.563 Sum_probs=72.4
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
.++||||++++|+| ||||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|+. .+++++|||
T Consensus 2 ~~~CepI~~~~C~~-l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~-~~~~i~PCR 77 (125)
T cd07466 2 HGFCQPISIPLCTD-IAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELKFFLCSMYAPVCTV-LEQAIPPCR 77 (125)
T ss_pred CCccccCCHHHhCC-CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCCccCC-CCCcCCCcH
Confidence 47999999999999 79999999999999999999999999999999999999999999999999986 447899998
No 9
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.98 E-value=2e-33 Score=184.97 Aligned_cols=76 Identities=28% Similarity=0.547 Sum_probs=73.1
Q ss_pred CceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 11 QQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 11 ~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
++||||++++|+| ||||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|+++.+++++|||
T Consensus 1 ~~CepI~~~~C~~-l~Yn~T~~PN~lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCR 76 (121)
T cd07457 1 GKCERITIPMCQG-IGYNMTRMPNLLGHESQSEAAISIHEFAPLVQYGCAEHLRFFLCSLYAPMCTEQVSIPIPACR 76 (121)
T ss_pred CcCccCChHhhCC-CCCCceeCCCcCCCcCHHHHHHHHHHHHHHHhcCCChhHHHHhhhccCcccCCCCCCcCCccH
Confidence 4899999999999 799999999999999999999999999999999999999999999999999987678999998
No 10
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.98 E-value=3.1e-33 Score=183.82 Aligned_cols=75 Identities=31% Similarity=0.567 Sum_probs=72.3
Q ss_pred ceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 12 QCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 12 ~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
+||||++++|+| +|||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|+++.+++++|||
T Consensus 1 ~Cepi~~~~C~~-l~Yn~T~~PN~lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCR 75 (120)
T cd07456 1 KCEEITIPMCKG-IGYNMTYMPNQFNHDTQEEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYDKPLPPCR 75 (120)
T ss_pred CccccChhhhCC-CCCCcccCCCcCCCcCHHHHHHHHHHHHHHHhCCCChhHHHHhHhccCcccCCCCCCcCCccH
Confidence 699999999999 799999999999999999999999999999999999999999999999999987678999998
No 11
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata.
Probab=99.98 E-value=2.8e-33 Score=185.55 Aligned_cols=76 Identities=28% Similarity=0.541 Sum_probs=72.5
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
.++||||++++|+| ||||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|+. .+++++|||
T Consensus 2 ~~~Cepi~~~~C~~-l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSl~~P~C~~-~~~~i~PCR 77 (127)
T cd07465 2 HGYCQPISIPLCTD-IAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSAELKFFLCSMYAPVCTV-LEQALPPCR 77 (127)
T ss_pred CCeeeeCCHHHhCC-CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhhHhHhhhccCCcccC-CCCcCCccH
Confidence 47999999999999 79999999999999999999999999999999999999999999999999986 447899998
No 12
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 2 (Fz2) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz2 is involved in the Wnt/beta-catenin signaling pathway and in the activation of protein kinase C and calcium/calmodulin-dependent protein kinase (CaM kinase).
Probab=99.98 E-value=3.3e-33 Score=185.22 Aligned_cols=76 Identities=25% Similarity=0.518 Sum_probs=72.3
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
.++|+||++++|++ ||||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|+. .+++++|||
T Consensus 2 ~~~CepI~~~~C~~-l~Yn~T~~PN~lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~-~~~~i~PCR 77 (127)
T cd07464 2 HGFCQPISIPLCTD-IAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSLELRFFLCSMYAPVCTV-LEQAIPPCR 77 (127)
T ss_pred CCccccCChhhhCC-CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHhhccCCccCC-CCCcCCCcH
Confidence 47999999999999 79999999999999999999999999999999999999999999999999986 347899998
No 13
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=99.97 E-value=4.9e-33 Score=183.32 Aligned_cols=75 Identities=28% Similarity=0.597 Sum_probs=70.5
Q ss_pred ceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhh--hhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 12 QCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAA--LPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 12 ~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~--~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
+|+||++++|+| ||||.|+|||++||++|+||+.+ +..|.+|++++||+++++||||+|+|+|+++++++++|||
T Consensus 1 ~CepI~~~~C~~-l~Yn~T~~PN~lgH~sq~ea~~~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCR 77 (122)
T cd07888 1 QCEPITLELCMN-LPYNTTRYPNYLGHRTQKEASISWESSLFPALVQTNCYKYLMFFACTILVPKCDPVTQQRIPPCR 77 (122)
T ss_pred CCccCCHhhhCC-CCcCcccCCcccCCCCHHHHHHhhhHHHHHhHHhcCCChhHHHHHHhccCccccCCCCCCCCCcH
Confidence 599999999999 79999999999999999999764 5699999999999999999999999999987778999998
No 14
>cd07458 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 1. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7 (Fz7) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=99.97 E-value=4.8e-33 Score=182.71 Aligned_cols=75 Identities=29% Similarity=0.601 Sum_probs=71.6
Q ss_pred CceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 11 QQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 11 ~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
++|+||++++|+| ||||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|+. .+++++|||
T Consensus 1 ~~C~pi~~~~C~~-l~Yn~T~~PN~lgh~~q~ea~~~l~~~~pLv~~~C~p~l~~FlCsl~~P~C~~-~~~~i~PCR 75 (119)
T cd07458 1 GKCEPITIPLCTD-IPYNMTIFPNLLGHTKQEDAGLEVHQFYPLVKVQCSPDLKFFLCSVYAPVCTV-LERPIPPCR 75 (119)
T ss_pred CccccCChHHhCC-CCCCccCCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccccccCC-CCCcCCccH
Confidence 4899999999999 79999999999999999999999999999999999999999999999999986 357999998
No 15
>cd07448 CRD_FZ4 Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 4 (Fz4) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and the Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 4 (Fz4) activates the Ca(2+)/calmodulin-dependent protein kinase II and protein kinase C of the Wnt/Ca(2+) signaling pathway during retinal angiogenesis. Mutations in Fz4 lead to familial exudative vitreoretinopathy (FEVR
Probab=99.97 E-value=6.2e-33 Score=183.67 Aligned_cols=76 Identities=29% Similarity=0.560 Sum_probs=73.2
Q ss_pred CceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 11 QQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 11 ~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
.+|+||++++|+| ||||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|+++.+++++|||
T Consensus 2 ~~Cepi~~~~C~~-l~Yn~T~~PN~lgh~sq~ea~~~l~~~~pLv~~~Csp~l~~flCsl~~P~C~~~~~~~i~PCR 77 (126)
T cd07448 2 RRCEPIRIEMCQG-LGYNVTRMPNLVGHELQTDAELQLQTFTPLIQYGCSSQLKFFLCSVYVPMCTEKVPVPIGPCR 77 (126)
T ss_pred CeeeeCCHHHhCC-CCcccccCCCcCCCcCHHHHHHHHHHHHHHhhcCCChhHHhHhhhccccccCCCCCCcCCcCH
Confidence 6899999999999 899999999999999999999999999999999999999999999999999987668999998
No 16
>cd07449 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 3 (Fz3) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz3 plays a vital role in the anterior-posterior guidance of commissural axons. Knockout mice without Fz3 show defects in fiber tracts in the rostral CNS.
Probab=99.97 E-value=8.5e-33 Score=183.25 Aligned_cols=75 Identities=27% Similarity=0.522 Sum_probs=71.5
Q ss_pred CceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 11 QQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 11 ~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
.+|+||++++|+| ||||.|+|||++||++|+||+.++++|.+|++++||+++++||||+|+|+|++. +++++|||
T Consensus 3 ~~CepI~~~~C~~-l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSly~P~C~~~-~~~i~PCR 77 (127)
T cd07449 3 FSCEPITLRMCQD-LPYNTTFMPNLLNHYDQQTAALAMEPFHPMVNLECSRDFRPFLCALYAPVCMEY-GRVTLPCR 77 (127)
T ss_pred ceeeeCChhhhCC-CCCCcccCCcccCCcCHHHHHHHHHhhcccccCCcChhhHhHhheeeccccCCC-CCCCCCCH
Confidence 4899999999999 799999999999999999999999999999999999999999999999999864 47899998
No 17
>cd07446 CRD_SFRP2 Cysteine-rich domain of the secreted frizzled-related protein 2 (SFRP2), a regulator of Wnt activity. The cysteine-rich-domain (CRD) is an essential part of the secreted frizzled related protein 2 (SFRP2), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. As a Wnt antagonist, SFRP2 regulates Nkx2.2 expression in the ventral spinal cord and anteroposterior axis elongation. SFRP2 also has a Wnt-independent function as an enhancer of procollagen cleavage by the TLD proteinases. SFRP2 binds both procollagen and TLD, thus facilitating the enzymatic reaction by bringing togeth
Probab=99.97 E-value=2.5e-32 Score=181.26 Aligned_cols=77 Identities=23% Similarity=0.553 Sum_probs=73.5
Q ss_pred CCceeeCc--ccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSPH--LKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~--l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
.++|++|. +++|+| ||||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|+++.+++++|||
T Consensus 2 ~s~C~pI~~~l~~C~~-l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~~~~~~~i~PCR 80 (128)
T cd07446 2 KSNCKPIPANMLLCHG-IEYTNMRLPNLLGHETMKEVLQQAGSWIPLVQKQCHPDTKKFLCSLFAPVCLDDLDEAIQPCR 80 (128)
T ss_pred CCCceECCCCchhhcC-CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccCccccCCCCCcCCccH
Confidence 57999997 899999 799999999999999999999999999999999999999999999999999987678999998
No 18
>cd07455 CRD_Collagen_XVIII Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 ). The cysteine-rich domain (CRD) is an essential part of the variant 3 of collagen XVIII (V3C18), which regulates major cellular functions such as the differential epithelial morphogenesis of early lung and kidney development. V3C18 is a 170 kD protein, which is proteolotically processed into the CRD-containing 50 kD glucoprotein precursor that binds Wnt3a through its CRD domain and suppresses the Wnt3a-induced stabilization of beta catenin. Full-length V3C18 is unable to inhibit Wnt signaling.
Probab=99.97 E-value=2.2e-32 Score=180.46 Aligned_cols=77 Identities=27% Similarity=0.484 Sum_probs=73.6
Q ss_pred CCceeeC--cccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSP--HLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi--~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
..+|++| ++++|+| |+||.|+|||++||++|+||+.++.+|.+|++++||+++++||||+|+|+|+....++++|||
T Consensus 2 ~~~C~pIp~~l~~C~~-l~Yn~t~~PN~lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCs~~~P~C~~~~~~~i~PCR 80 (123)
T cd07455 2 RPRCLPVPSSLPFCSR-LGIRSFWLPNFLNHTSVEEVRAVLAEWAWLLESGCHPSLEWFFCLLLVPSCGGGPPPPPPPCR 80 (123)
T ss_pred CCCCccCCCccccccC-CCcccccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhhHHHhhhccCCcccCCCCCcCCccH
Confidence 4689999 8999999 799999999999999999999999999999999999999999999999999987767899998
No 19
>cd07450 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 6 (Fz6) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 6 (Fz6) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 6 (Fz6) is expressed in the skin and hair follicles and controls hair patterning in mammals using a Fz-dependent tissue polarity system, which is similar to the one that patterns the Drosophila cuticle.
Probab=99.97 E-value=4.2e-32 Score=179.93 Aligned_cols=75 Identities=25% Similarity=0.517 Sum_probs=71.2
Q ss_pred CceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 11 QQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 11 ~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
.+||||++++|+| ||||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|++.. ++++|||
T Consensus 3 ~~CepI~~~~C~~-l~YN~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~-~~i~PCR 77 (127)
T cd07450 3 FTCEPITVPRCLK-MPYNMTFFPNLMGHYDQDIAAVEMEPFLPLANLRCSPNVHTFLCQAFVPTCTEQI-HVVRPCR 77 (127)
T ss_pred ceeeeCChhhcCC-CCCCcccCCcccCCcCHHHHHHHHHHHHhHhccCCChhhhhheeeeecccccCCC-CcCCCCH
Confidence 4899999999999 8999999999999999999999999999999999999999999999999998743 6789998
No 20
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the first (N-terminal) CRD.
Probab=99.97 E-value=1.3e-31 Score=177.99 Aligned_cols=76 Identities=26% Similarity=0.545 Sum_probs=70.9
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCC--CCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNG--QNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~--~~~i~PCR 87 (87)
.++||||++++|+| ||||.|.|||++||.+ .||+.++..|.+|++++||+++++||||+|+|+|++++ .++++|||
T Consensus 2 ~~~CepI~i~~C~~-l~YN~T~~PN~lgh~~-~ea~~~l~~f~pLv~~~Csp~l~~FLCSlyaP~C~~~~~~~~~i~PCR 79 (130)
T cd07445 2 TSACMNITHSQCQM-LPYHSTLKPSLLSVKN-MEMEKFLKFFSYLHRLSCYQHIMLFGCSLALPECISDGDDRHGLLPCR 79 (130)
T ss_pred CCccccCChhhhCC-CCCccccCCccccccC-HHHHHHHHhhccccccCcChhhHHHhhhccCccccCCCCCCCcCCCCH
Confidence 57999999999999 8999999999999987 59999999999999999999999999999999999864 36899998
No 21
>cd07447 CRD_Carboxypeptidase_Z Cysteine-rich domain of carboxypeptidase Z, a member of the carboxypeptidase E family. The cysteine-rich-domain (CRD) is an essential part of carboxypeptidase Z, a member of the carboxypeptidase E family of metallocarboxypeptidases. This is a group of Zn-dependent enzymes implicated in the intra- and extracellular processing of proteins. Carboxypeptidase Z removes C-terminal basic amino acid residues from its substrates, particularly arginine. The CRD acts as a ligand-binding domain for Wnts involved in developmental processes. CPZ binds and may process Wnt-4, CPZ has also been found to enhance the induction of the homeobox gene Cdx1. During vertebrate embryogenesis, the CRD of CPZ upregulates Pax3, a Wnt reporter gene essential for patterning of somites and limb development.
Probab=99.97 E-value=3.2e-31 Score=175.92 Aligned_cols=74 Identities=27% Similarity=0.557 Sum_probs=68.3
Q ss_pred CceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhh-----hhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCC
Q psy1289 11 QQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAA-----LPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPP 85 (87)
Q Consensus 11 ~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~-----~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~P 85 (87)
.+|++|++++|+| ||||.|+|||++||++|++++++ +..|.+|++++||+++++||||+|+|+|+. +++++|
T Consensus 2 ~~CepI~~~~C~~-l~Yn~T~~PN~lgH~sq~~~~~~~~~~~l~~f~pLv~~~C~p~l~~FLCSl~~P~C~~--~~~i~P 78 (128)
T cd07447 2 ATCTDLLLSYCSD-VSYTQTTFPNLLGHRSREVTEAGAEYLLLSVLHGLLGGECNPDIRLLGCSVLAPRCEN--DKVIKP 78 (128)
T ss_pred CcccCCChhhcCC-CCCCcccCCcccCCCCHHHHHhhhhHhHHHHHhhhhhcCcChhHHhHhhcccccccCC--CCccCC
Confidence 5899999999999 79999999999999999987543 679999999999999999999999999986 368999
Q ss_pred CC
Q psy1289 86 FS 87 (87)
Q Consensus 86 CR 87 (87)
||
T Consensus 79 CR 80 (128)
T cd07447 79 CR 80 (128)
T ss_pred CH
Confidence 98
No 22
>smart00063 FRI Frizzled. Drosophila melanogaster frizzled mediates signalling that polarises a precursor cell along the anteroposterior axis. Homologues of the N-terminal region of frizzled exist either as transmembrane or secreted molecules. Frizzled homologues are reported to be receptors for the Wnt growth factors. (Not yet in MEDLINE: the FRI domain occurs in several receptor tyrosine kinases [Xu, Y.K. and Nusse, Curr. Biol. 8 R405-R406 (1998); Masiakowski, P. and Yanopoulos, G.D., Curr. Biol. 8, R407 (1998)].
Probab=99.97 E-value=3.4e-31 Score=172.35 Aligned_cols=73 Identities=27% Similarity=0.588 Sum_probs=69.9
Q ss_pred eeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 13 CFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 13 C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
|+||++++|+| ++||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|++.+. +++|||
T Consensus 1 C~pi~~~~C~~-l~Yn~T~~PN~l~h~~q~ea~~~l~~~~~L~~~~C~p~l~~flCsl~~P~C~~~~~-~~~PCR 73 (113)
T smart00063 1 CEPITIPLCKD-LGYNLTSMPNLLGHTTQEEAGLELEQFHPLLNVQCSPDLRFFLCSVYAPICTEDLR-PILPCR 73 (113)
T ss_pred CcCCCcHhHCC-CCcccccCCCccCCCCHHHHHHHHHHHHhhccCCCChhHHHHhHhccCcccCCCCC-cCCcCH
Confidence 89999999999 89999999999999999999999999999999999999999999999999987653 799998
No 23
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 5 (SFRP5), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=99.97 E-value=5.5e-31 Score=174.60 Aligned_cols=76 Identities=24% Similarity=0.492 Sum_probs=71.6
Q ss_pred CCCCceeeCc--ccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCC
Q psy1289 8 VGQQQCFSPH--LKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPP 85 (87)
Q Consensus 8 ~~~~~C~pi~--l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~P 85 (87)
...++|++|. +++|+| ||||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|++ ++++|
T Consensus 2 ~~~~~C~pIp~~l~~C~~-l~Yn~T~~PN~lgH~~q~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~~---~~i~P 77 (127)
T cd07444 2 SKQPQCVDIPADLPLCHN-VGYKRMRLPNLLEHESMAEVKQQASSWVPLLAKRCHADTQVFLCSLFAPVCLD---RPIYP 77 (127)
T ss_pred CCCCCceECCCCchhhcC-CCCCceeCCcccCCCCHHHHHHHHHHHHHHHhcccCHHHHHHhhhhcCCCCCC---CCCCC
Confidence 3568999996 999999 79999999999999999999999999999999999999999999999999973 68999
Q ss_pred CC
Q psy1289 86 FS 87 (87)
Q Consensus 86 CR 87 (87)
||
T Consensus 78 CR 79 (127)
T cd07444 78 CR 79 (127)
T ss_pred cH
Confidence 98
No 24
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 1 (SFRP1), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP1 is expressed in many tissues and is involved in the regulation of Wnt signaling in osteoblasts, leading to enhanced trabecular bone formation in adults; it has also been shown to control the gro
Probab=99.96 E-value=1.3e-30 Score=172.21 Aligned_cols=76 Identities=21% Similarity=0.487 Sum_probs=71.7
Q ss_pred CCCCceeeCc--ccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCC
Q psy1289 8 VGQQQCFSPH--LKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPP 85 (87)
Q Consensus 8 ~~~~~C~pi~--l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~P 85 (87)
.+.++|++|. +++|+| |+||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|.+ ++++|
T Consensus 2 ~~~~~C~pIp~~l~~C~~-l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCsl~~P~C~~---~~i~P 77 (124)
T cd07443 2 TKPPQCVDIPADLRLCHN-VGYKKMVLPNLLDHETMAEVKQQASSWVPLLNKNCHKGTQVFLCSLFAPVCLD---RPVYP 77 (124)
T ss_pred CCCCCceECCCchhhhcC-CCCCceeCccccCCCCHHHHHHHHHHHHHHHhccccHHHHHHhhheeccCCCC---CCCCC
Confidence 4578999997 899999 79999999999999999999999999999999999999999999999999973 68999
Q ss_pred CC
Q psy1289 86 FS 87 (87)
Q Consensus 86 CR 87 (87)
||
T Consensus 78 CR 79 (124)
T cd07443 78 CR 79 (124)
T ss_pred CH
Confidence 98
No 25
>cd07452 CRD_sizzled Cysteine-rich domain of the sizzled protein. The cysteine-rich domain (CRD) is an essential part of the sizzled protein, which regulates bone morphogenetic protein (Bmp) signaling by stabilizing chordin, and plays a critical role in the patterning of vertebrate and invertebrate embryos. Sizzled also functions in the ventral region as a Wnt inhibitor and modulates canonical Wnt signaling. Sizzled proteins belong to the secreted frizzled-related protein family (SFRP), and have be identified in the genomes of birds, fishes and frogs, but not mammals.
Probab=99.96 E-value=2.7e-30 Score=173.85 Aligned_cols=77 Identities=26% Similarity=0.584 Sum_probs=71.7
Q ss_pred CCCCCceeeCc--ccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCC
Q psy1289 7 LVGQQQCFSPH--LKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILP 84 (87)
Q Consensus 7 ~~~~~~C~pi~--l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~ 84 (87)
...+++|++|. +++|+| ||||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|.+ ++++
T Consensus 3 ~~~s~~C~pIp~~l~~C~~-l~Yn~T~~PN~lgH~sq~ea~~~~~~f~pLv~~~C~p~l~~FlCSl~~P~C~~---~~i~ 78 (141)
T cd07452 3 IGLSTKCVPIPPEMSMCQD-VGYSEMRLPNLLGHTSMAEVVPKSADWQTLLHTGCHPHARTFLCSLFAPVCLD---TFIQ 78 (141)
T ss_pred CCCCCcceeCCCcchhhcC-CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhcccCCCC---CCCc
Confidence 34467999996 999999 79999999999999999999999999999999999999999999999999974 5799
Q ss_pred CCC
Q psy1289 85 PFS 87 (87)
Q Consensus 85 PCR 87 (87)
|||
T Consensus 79 PCR 81 (141)
T cd07452 79 PCR 81 (141)
T ss_pred CCH
Confidence 998
No 26
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein. The cysteine-rich domain (CRD) is an essential part of the crescent protein, a member of the secreted frizzled-related protein (SFRP) family, which regulates convergent extension movements (CEMs) during gastrulation and neurulation. Xenopus laevis crescent efficiently forms inhibitory complexes with Wnt5a and Wnt11, but this effect is cancelled in the presence of another member of the SFRP family, Frzb1. A potential role for Crescent in head formation is to regulate a non-canonical Wnt pathway positively in the adjacent posterior mesoderm, and negatively in the overlying anterior neuroectoderm.
Probab=99.96 E-value=4e-30 Score=171.99 Aligned_cols=73 Identities=22% Similarity=0.489 Sum_probs=68.4
Q ss_pred CceeeC--cccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 11 QQCFSP--HLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 11 ~~C~pi--~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
++|++| ++++|+| ||||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|+ +++++|||
T Consensus 1 ~~C~~iP~~l~~C~~-l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FLCSl~~P~C~---~~~i~PCR 75 (135)
T cd07453 1 SPCMRIPKSMALCYD-IGYSEMRIPNLLEHETMAEVIQQSSSWLPLLARECHPDARIFLCSLFAPICW---DRPIYPCR 75 (135)
T ss_pred CCCccCCCcchhhCC-CCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhhcCccCC---CCCCCccH
Confidence 478876 5899999 7999999999999999999999999999999999999999999999999998 47899998
No 27
>cd07451 CRD_SMO Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein. The cysteine-rich domain (CRD) is part of the smoothened receptor (Smo), an integral membrane protein and one of the key players in the Hedgehog (Hh) signaling pathway, critical for development, cell growth and migration, as well as stem cell maintenance. The CRD of Smo is conserved in vertebrates and can also be identified in invertebrates. The precise function of the CRD in Smo is unknown. Mutations in the Drosophila CRD disrupt Smo activity in vivo, while deletion of the CRD in mammalian cells does not seem to affect the activity of overexpressed Smo.
Probab=99.95 E-value=4.5e-29 Score=166.36 Aligned_cols=76 Identities=22% Similarity=0.463 Sum_probs=70.9
Q ss_pred CCceeeCcccCccCC-CCCccccCCCCCCCCCHHHHhhhhhhhhhhhcc-CCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGV-TPYDITAQPNIPGITSLSSLEAALPYFEMIAES-KCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~-l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~-~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
.++|++|++++|+|. ||||.|+|||++||++|+||..++..|.+|+++ +||+++++||||+|+|+|.. +++++|||
T Consensus 2 ~~~Cepi~~~~C~g~~lpYn~T~~PN~~~h~tq~ea~~~l~~f~pLv~vp~C~~~l~~FLCSly~P~C~~--~~~~~PCR 79 (132)
T cd07451 2 PAKCEPLKNTTCLGSKLPYTYTSLDLVPDSTTQEEVQEKLHLWSGLRNVPKCWAVIQPLLCALYMPKCEN--GKVELPSQ 79 (132)
T ss_pred CceeeECCccccCCCCCCccceecCCccCCcCHHHHHHHHHHHHHHHhhcccchhheeeeEeeECCcCCC--CCccCCCH
Confidence 579999999999662 599999999999999999999999999999999 99999999999999999976 37899997
No 28
>KOG3577|consensus
Probab=99.92 E-value=3.5e-26 Score=180.04 Aligned_cols=77 Identities=30% Similarity=0.600 Sum_probs=74.2
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
..+|++|++++|++ +|||.|.|||++||++|+||..++.+|.||++.+||+++++||||+|+|+|+++.+++++|||
T Consensus 40 ~~~c~pi~i~~C~~-i~Yn~T~~PNll~H~tQ~ea~~~~~~f~PLv~~~Cs~~l~~FLCS~y~P~C~~~~d~pi~PCR 116 (556)
T KOG3577|consen 40 KARCEPITIPMCQG-LGYNMTAMPNLVGHETQEEAGLKLHQFHPLVALRCSPGLRFFLCSLYAPMCTEDLDRPILPCR 116 (556)
T ss_pred cccccceeccccCC-CCCCcccCCccccchhHHHhhhcccccCCccccccchhhhhHhhcCCCCcCccccCcccCccH
Confidence 45899999999999 899999999999999999999999999999999999999999999999999987789999998
No 29
>cd07066 CRD_FZ CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain. CRD_FZ is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact wit
Probab=99.91 E-value=2.5e-25 Score=143.80 Aligned_cols=75 Identities=40% Similarity=0.787 Sum_probs=71.7
Q ss_pred ceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 12 QCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 12 ~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
+|+||..++|++ +|||.|.|||.+||.+|+||...+..|.+|+.++||+++++|+|++|+|+|.+++..+++|||
T Consensus 1 ~C~pi~~~~C~~-~~Yn~t~~pn~~~~~~~~~a~~~~~~~~~l~~~~C~~~~~~f~Cs~~~P~C~~~~~~~~~PCR 75 (119)
T cd07066 1 KCEPIPLPLCRG-LPYNTTRFPNLLGHESQEEAEQELESFTPLVNSGCHPDLRFFLCSLYFPECTPDGDRPIPPCR 75 (119)
T ss_pred CCccCCHHHhCC-CCCCceeCCCccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHhccCccccCCCCCcCCChH
Confidence 599999999999 699999999999999999999999999999999999999999999999999987667899998
No 30
>PF01392 Fz: Fz domain; InterPro: IPR020067 The frizzled (fz) domain is an extracellular domain of about 120 amino acids.It was first identified in the alpha-1 chain of type XVIII collagen and in members of the Frizzled family of seven transmembrane (7TM) proteins which act as receptors for secreted Wingless (Wg)/Wnt glycoproteins []. In addition to these proteins, one or two copies of the fz domain are also found [, , , , ] in: The frizbee (Frzb) family; secreted frizzled-like proteins. Smoothened; another 7TM receptor involved in hedgehog signaling. Carboxpeptidase Z (CPZ). Transmembrane serine protease corin. Two receptor tyrosine kinases (RTKs) subfamilies, the Ror family and the muscle-specific kinase (MuSK) family. As the fz domain contains 10 cysteines which are largely conserved, it has also been called cysteine-rich domain (CRD) []. The fz domain also contains several other highly conserved residues, for example, a basic amino acid follows C6, and a conserved proline residues lies four residues C-terminal to C9 []. The crystal structure of a fz domain shows that it is predominantly alpha-helical with all cysteines forming disulphide bonds. In addition to helical regions, two short beta-strands at the N terminus form a minimal beta-sheet with the second beta sheet passing through a knot created by disulphide bonds []. Several fz domains have been shown to be both necessary and sufficient for Wg/Wnt ligand binding, strongly suggesting that the fz domain is a Wg/Wnt interacting domain [, ].; GO: 0005515 protein binding; PDB: 1IJX_E 3HKL_B 1IJY_B 4F0A_A.
Probab=99.87 E-value=4.6e-23 Score=131.10 Aligned_cols=74 Identities=36% Similarity=0.709 Sum_probs=62.8
Q ss_pred eeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCC-CCCCC
Q psy1289 13 CFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNI-LPPFS 87 (87)
Q Consensus 13 C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~-i~PCR 87 (87)
|+||++++|++ ++||.|.|||.+||.+|+++..++..|..|++.+||++++.|||++++|+|.+++..+ ++|||
T Consensus 1 C~pi~~~~C~~-~~y~~t~~pn~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~flC~~~~P~C~~~~~~~~~~pCr 75 (116)
T PF01392_consen 1 CEPITLSFCRG-LPYNQTSFPNSLGHQTQDEASQQLNAFSTLVNSGCHPYLRPFLCSLYFPPCDEGGPTPPLPPCR 75 (116)
T ss_dssp EEE---GGGTT-SS-TEEESSETTTSSSHHHHHHHHHCCHHHHCCTSHTTHHHHHHHHHS-BBBSSSSSSB-EB-H
T ss_pred CccCChHHhcC-CCCCceEeecccCCcCHHHHHHHHHHHHHHhcchhhHHHhhhhhcccCCcCCCCCcccccCCCH
Confidence 89999999999 7999999999999999999999999999999999999999999999999998877533 89997
No 31
>cd07459 CRD_TK_ROR_like Cysteine-rich domain of tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=97.49 E-value=4.2e-05 Score=51.00 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=49.1
Q ss_pred CceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhh-hhhhhh--hhccCCchhhhhhhcccccccccCCCC--CCCCC
Q psy1289 11 QQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAA-LPYFEM--IAESKCSPRAKQFLCSLLEPECQPNGQ--NILPP 85 (87)
Q Consensus 11 ~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~-~~~f~~--Lv~~~Cs~~l~~flCs~~~P~C~~~~~--~~i~P 85 (87)
+.|++=+-..|+++|+-+...+.+.....++++.... +..+.. -+...|.+++..+||..++|.|.+... .+.+-
T Consensus 1 G~C~~Y~G~vC~~~L~~~~Vyv~~~~~q~~~e~~l~~~~~~i~~~~~ls~~C~~~a~~~lC~~~FP~C~~~~~~~~p~~i 80 (135)
T cd07459 1 GYCQPYRGSVCAKYLGNKSVYVTSKQTQEDIEEQLSAAFTVISTSSDVSPKCQQYALPSLCYYAFPLCDEGSSTPKPRRI 80 (135)
T ss_pred CcCccccchhhHHhcCCCeEEEeCCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhCCCCCCCCCCCCCCcc
Confidence 3577777789999877444444444444433222222 222222 356799999999999999999987543 45666
Q ss_pred CC
Q psy1289 86 FS 87 (87)
Q Consensus 86 CR 87 (87)
||
T Consensus 81 Cr 82 (135)
T cd07459 81 CR 82 (135)
T ss_pred cH
Confidence 75
No 32
>cd07467 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinase-like orphan receptor 1. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor 1 (Ror1), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=94.89 E-value=0.011 Score=40.08 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=44.1
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhh-hh-----hhhccCCchhhhhhhcccccccccCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPY-FE-----MIAESKCSPRAKQFLCSLLEPECQPNGQN 81 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~-f~-----~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~ 81 (87)
.+-|++-+=..|+++|.=...++ |.. .+|.+.+..+.. |. .-+...|.+++..+||...+|.|.+.+..
T Consensus 2 ~GyC~~YrG~vC~~~L~~~~Vf~-~~~--~~~~~~E~~l~aa~~~i~~s~~vs~~Cr~~A~~~LC~~~FP~C~~~~~~ 76 (142)
T cd07467 2 DGFCQPYRGIACARFIGNRTIYM-ESL--HMQGEIENQITAAFTMIGTSSHLSDKCSQFAIPSLCHYAFPYCDETSGM 76 (142)
T ss_pred CCccccccchHHHHHhCCCeEEE-eCC--CCHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhCCCCcccCCC
Confidence 45687878888888655444433 321 234444333322 22 22456999999999999999999986543
No 33
>cd07468 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinase-like orphan receptor 2. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror2), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=93.84 E-value=0.026 Score=38.23 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=42.1
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhh------hhhhhccCCchhhhhhhcccccccccCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPY------FEMIAESKCSPRAKQFLCSLLEPECQPNGQ 80 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~------f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~ 80 (87)
.+-|++-+-..|+++|.=...++-... .|.+++..+.. -..-+...|.+++..+||...+|.|.+.+.
T Consensus 2 ~G~C~~Y~G~vC~~yL~~~~V~v~~~~---~~~~ie~~l~aa~~~i~~s~~ls~~Cr~~A~~~LC~~~Fp~C~~~~~ 75 (140)
T cd07468 2 DGFCQPYRGIACARFIGNRTIYVDSLQ---MQGEIENRITAAFTMIGTSTHLSDQCSQFAIPSFCHFVFPLCDDRSR 75 (140)
T ss_pred CCcceeccChHHHHHhCCCeEEEecCC---chHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 456888888888886543333331111 23333332222 223345699999999999999999987653
No 34
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands.
Probab=92.61 E-value=0.062 Score=36.64 Aligned_cols=77 Identities=22% Similarity=0.425 Sum_probs=47.5
Q ss_pred CCceeeCcccCccCCCCCc-cccC-CCCCCCCCHHHHhhhhhhhhhh---hccCCchhhhhhhcccccccccCCCCCC--
Q psy1289 10 QQQCFSPHLKMCRGVTPYD-ITAQ-PNIPGITSLSSLEAALPYFEMI---AESKCSPRAKQFLCSLLEPECQPNGQNI-- 82 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn-~T~~-PN~lgh~~q~e~~~~~~~f~~L---v~~~Cs~~l~~flCs~~~P~C~~~~~~~-- 82 (87)
.+-|.+-+=..|+++|.=+ ..+| +|.-...+.+|-.+. ..|..+ +...|.++....||...+|.|.+.+.++
T Consensus 2 ~GyC~~Y~G~iC~~yL~~~~~V~~~~s~~~~~~~~E~l~~-~~~~e~~~~ls~~Cr~~A~~~LC~~aFP~C~~~~~~p~p 80 (147)
T cd07469 2 AGYCATYRGEVCRAYLSNDALVWFNSSYADPEGLNEQLTT-GLWEELIKTVSELCRPAAEKLLCNYAFPECHPSGVGPTP 80 (147)
T ss_pred CCccccccchHHHHHhCCCcEEEEecCCCCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 4568777888888876544 3323 322222222222221 134444 4569999999999999999999876433
Q ss_pred CCCCC
Q psy1289 83 LPPFS 87 (87)
Q Consensus 83 i~PCR 87 (87)
.+=||
T Consensus 81 ~plCr 85 (147)
T cd07469 81 KPLCR 85 (147)
T ss_pred CchhH
Confidence 34454
No 35
>PF12447 DUF3683: Protein of unknown function (DUF3683); InterPro: IPR022153 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF02754 from PFAM, PF01565 from PFAM, PF02913 from PFAM.
Probab=51.20 E-value=7.4 Score=25.57 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=8.0
Q ss_pred CCCccccCC
Q psy1289 25 TPYDITAQP 33 (87)
Q Consensus 25 l~Yn~T~~P 33 (87)
+|||.|+|-
T Consensus 7 IPYNYTS~s 15 (115)
T PF12447_consen 7 IPYNYTSFS 15 (115)
T ss_pred CCCCCCCcc
Confidence 799999986
No 36
>PRK13716 leader peptide RepL; Provisional
Probab=50.73 E-value=5.1 Score=19.35 Aligned_cols=9 Identities=67% Similarity=1.029 Sum_probs=6.8
Q ss_pred hhhhccccc
Q psy1289 64 KQFLCSLLE 72 (87)
Q Consensus 64 ~~flCs~~~ 72 (87)
.+||||++.
T Consensus 7 d~flcsll~ 15 (26)
T PRK13716 7 DFFLCSLLL 15 (26)
T ss_pred hhhhhhhhh
Confidence 468999874
No 37
>PF12929 Mid1: Stretch-activated Ca2+-permeable channel component; InterPro: IPR024338 Mid1 is a yeast plasma membrane protein required for Ca2+ influx induced by the mating pheromone alpha-factor during the mating process [, , ]. The protein is composed of 548-amino-acid residues, contains four hydrophobic regions (H1, H2, H3 and H4) and two cysteine-rich regions (C1 and C2) at the C terminus. H1 appears to be a signal sequence necessary for the alpha-factor-induced delivery to the plasma membrane. The region from H1 to H3 is required for the localisation of Mid1 in the plasma and ER membranes. C1 and C2 are thought to be involved in oligomerisation via the formation of disulphide bonds. Trafficking of Mid1-GFP to the plasma membrane is dependent on the N-glycosylation of Mid1 and the transporter protein Sec12. This suggests that the trafficking of Mid1-GFP to the plasma membrane requires a Sec12-dependent pathway from the ER to the Golgi, and that Mid1 is recruited via a Sec6- and Sec7-independent pathway from the Golgi to the plasma membrane.
Probab=50.64 E-value=17 Score=28.69 Aligned_cols=68 Identities=18% Similarity=0.442 Sum_probs=42.5
Q ss_pred CCceeeC-cccCccCCCCCccccCCCCCCCCCHHH------Hhhhhh-----------------hhhhhhc-cCCchhhh
Q psy1289 10 QQQCFSP-HLKMCRGVTPYDITAQPNIPGITSLSS------LEAALP-----------------YFEMIAE-SKCSPRAK 64 (87)
Q Consensus 10 ~~~C~pi-~l~~C~~~l~Yn~T~~PN~lgh~~q~e------~~~~~~-----------------~f~~Lv~-~~Cs~~l~ 64 (87)
...|.=| .|++|-+| .|.-=.-|+..+..+.-. |..... .|.++.. ..|...=|
T Consensus 230 ~~nC~Lv~dL~FC~~V-AYaVP~np~~~~n~t~L~~~YD~~A~~~Y~NFs~sL~qi~C~t~~~~~YSl~r~C~DC~~aYk 308 (427)
T PF12929_consen 230 DDNCQLVYDLDFCSEV-AYAVPSNPSFFYNKTELAKFYDDYAKSLYANFSKSLQQIPCNTDSEARYSLARTCDDCARAYK 308 (427)
T ss_pred CCCeeeecCCCCCCCc-ceecccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCchHHHHHHh
Confidence 4569887 69999994 888777776643222111 111111 2333332 36777778
Q ss_pred hhhcccccccccCC
Q psy1289 65 QFLCSLLEPECQPN 78 (87)
Q Consensus 65 ~flCs~~~P~C~~~ 78 (87)
.-||++-.|+|..-
T Consensus 309 ~WLCaVtIPRC~d~ 322 (427)
T PF12929_consen 309 NWLCAVTIPRCTDF 322 (427)
T ss_pred hcccEeecccccCC
Confidence 99999999999764
No 38
>PF08048 RepA1_leader: Tap RepA1 leader peptide; InterPro: IPR012605 This entry represents of the RepA1 leader peptide known as Tap found in IncFII plasmids. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesised, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid [, ]. The tap gene encodes a 24-amino acid peptide whose translation is required for the translation of repA.
Probab=38.13 E-value=8.3 Score=18.61 Aligned_cols=10 Identities=60% Similarity=1.045 Sum_probs=8.0
Q ss_pred hhhhcccccc
Q psy1289 64 KQFLCSLLEP 73 (87)
Q Consensus 64 ~~flCs~~~P 73 (87)
.+|||+++.|
T Consensus 7 ~~FLc~lLL~ 16 (25)
T PF08048_consen 7 YLFLCHLLLP 16 (25)
T ss_pred HHHHHHHHhh
Confidence 4689999876
No 39
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=36.10 E-value=9.8 Score=18.52 Aligned_cols=10 Identities=60% Similarity=1.045 Sum_probs=7.7
Q ss_pred hhhhcccccc
Q psy1289 64 KQFLCSLLEP 73 (87)
Q Consensus 64 ~~flCs~~~P 73 (87)
.+|||+++.|
T Consensus 7 ~~FLc~~LL~ 16 (26)
T TIGR03475 7 YLFLCHLLLP 16 (26)
T ss_pred HHHHHHHHhh
Confidence 3689998776
Done!