Query psy1289
Match_columns 87
No_of_seqs 110 out of 435
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:23:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ijx_A Secreted frizzled-relat 100.0 1.3E-32 4.5E-37 181.0 5.0 77 10-87 2-79 (127)
2 1ijy_A Frizzled homolog 8; WNT 100.0 9.5E-32 3.2E-36 177.5 5.2 78 9-87 6-83 (130)
3 3hkl_A Muscle, skeletal recept 94.3 0.012 4.2E-07 40.8 1.1 77 10-87 17-98 (197)
4 4aor_D Trypsin inhibitor 3; hy 21.1 14 0.00049 18.5 -0.6 9 60-68 28-36 (37)
5 1bus_A Proteinase inhibitor II 20.7 38 0.0013 18.3 1.1 24 56-79 4-29 (57)
6 1a56_A C-551, ferricytochrome 15.7 1E+02 0.0035 16.3 2.2 22 29-51 56-77 (81)
7 2exv_A Cytochrome C-551; alpha 11.0 1.9E+02 0.0066 15.0 2.4 20 29-50 58-77 (82)
8 2a26_A Calcyclin-binding prote 10.6 1.6E+02 0.0054 15.5 1.9 31 37-67 2-32 (50)
9 4fjo_A DNA repair protein REV1 10.4 1.5E+02 0.0052 17.4 1.9 22 32-53 2-23 (97)
10 3dr0_A Cytochrome C6; photosyn 9.9 1.9E+02 0.0065 15.2 2.2 26 30-55 63-88 (93)
No 1
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor, frizzled protein structure, cysteine-rich, SIG protein; 1.90A {Mus musculus} SCOP: a.141.1.1
Probab=99.97 E-value=1.3e-32 Score=181.00 Aligned_cols=77 Identities=25% Similarity=0.520 Sum_probs=73.1
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCC-CCCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQ-NILPPFS 87 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~-~~i~PCR 87 (87)
+++|+||++++|+| ||||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|.+++. ++++|||
T Consensus 2 ~~~C~pi~~~~C~~-l~Yn~T~~PN~lgh~~q~ea~~~~~~f~~Lv~~~C~~~l~~FlCs~~~P~C~~~~~~~~i~PCR 79 (127)
T 1ijx_A 2 SAACEPVRIPLCKS-LPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMYAPICTIDFQHEPIKPCK 79 (127)
T ss_dssp -CCCEECCCGGGGG-SSCCEECSSCTTCCSSHHHHHHHHHTTHHHHTTTCCTTHHHHHHHHHSCBCBSSCSSSCCCBCH
T ss_pred CCccccCChhHhCC-CCCCeeECCCcCCCcCHHHHHHHHHHHHHHHccCcCHHHHhhhhhccCCcccCCCCCcccCccH
Confidence 57999999999999 89999999999999999999999999999999999999999999999999998765 7899997
No 2
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure, cysteine-rich, signaling protein; 1.35A {Mus musculus} SCOP: a.141.1.1
Probab=99.97 E-value=9.5e-32 Score=177.49 Aligned_cols=78 Identities=28% Similarity=0.521 Sum_probs=74.3
Q ss_pred CCCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhhhhhhhhhccCCchhhhhhhcccccccccCCCCCCCCCCC
Q psy1289 9 GQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQPNGQNILPPFS 87 (87)
Q Consensus 9 ~~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~flCs~~~P~C~~~~~~~i~PCR 87 (87)
+..+|++|++++|++ ||||.|+|||++||++|+||..++..|.+|++++||+++++||||+|+|+|.++.+++++|||
T Consensus 6 ~~~~C~pI~~~~C~~-l~Yn~T~~PN~l~h~~q~ea~~~l~~f~~L~~~~C~~~l~~FlCs~~~P~C~~~~~~~~~PCR 83 (130)
T 1ijy_A 6 KELACQEITVPLCKG-IGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCR 83 (130)
T ss_dssp -CCCCEECCCGGGTT-SSCCEECSSCTTCCCSHHHHHHHHGGGHHHHHHTSCTTHHHHHHHHHSCBCCSSCCSCCCBCH
T ss_pred CCCeeeeCChhHhCC-CCCCeeECCCcCCCcCHHHHHHHHHHHHHHhccCcCHHHHHHHHHhhCCcccCCCCcccCccH
Confidence 567999999999999 899999999999999999999999999999999999999999999999999987678999997
No 3
>3hkl_A Muscle, skeletal receptor tyrosine protein kinase; MUSK, receptor tyrosine kinase, frizzled CRD, ATP-binding, D bond, glycoprotein; HET: NAG; 2.10A {Rattus norvegicus}
Probab=94.33 E-value=0.012 Score=40.75 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=49.3
Q ss_pred CCceeeCcccCccCCCCCccccCCCCCCCCCHHHHhhhh--hhhhhh--hccCCchhhhhhhcccccccccCC-CCCCCC
Q psy1289 10 QQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAAL--PYFEMI--AESKCSPRAKQFLCSLLEPECQPN-GQNILP 84 (87)
Q Consensus 10 ~~~C~pi~l~~C~~~l~Yn~T~~PN~lgh~~q~e~~~~~--~~f~~L--v~~~Cs~~l~~flCs~~~P~C~~~-~~~~i~ 84 (87)
.+.|++-+=..|+.+|.=|.+.|=|.- -.++.+.+..+ ..|..| +...|.+....+||...+|.|.+. ++.+++
T Consensus 17 ~GyC~~YrG~vC~~yL~g~~~Vf~nsS-~~dp~~~~E~l~~aaw~el~~lS~~Cr~aAe~lLC~yaFP~Cd~~~gP~P~p 95 (197)
T 3hkl_A 17 KGYCAQYRGEVCDAVLVKDSLVFFNTS-YPDPEEAQELLIHTAWNELKAVSPLCRPAAEALLCNHLFQECSPGVLPTPMP 95 (197)
T ss_dssp CEEEECCCCSSSTTTSCTTCCEEEETT-SSSHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHTCBBCSSSSCCBCC
T ss_pred CcccccccchHHHHHhCCCceEEEecC-cCCHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhCCCCCCCCCCCCcc
Confidence 456999999999998865544333311 12233332221 234444 346999999999999999999862 223455
Q ss_pred CCC
Q psy1289 85 PFS 87 (87)
Q Consensus 85 PCR 87 (87)
=||
T Consensus 96 LCR 98 (197)
T 3hkl_A 96 ICR 98 (197)
T ss_dssp BCH
T ss_pred hhH
Confidence 575
No 4
>4aor_D Trypsin inhibitor 3; hydrolase-inhibitor complex, miniprotein scaffold, knottins, protease inhibitor; HET: GOL MES; 1.70A {Spinacia oleracea} PDB: 4aoq_D*
Probab=21.12 E-value=14 Score=18.47 Aligned_cols=9 Identities=33% Similarity=0.921 Sum_probs=5.3
Q ss_pred chhhhhhhc
Q psy1289 60 SPRAKQFLC 68 (87)
Q Consensus 60 s~~l~~flC 68 (87)
||.+|.|+|
T Consensus 28 hp~lrifvc 36 (37)
T 4aor_D 28 HPILRIFVC 36 (37)
T ss_dssp CSSBSSEEE
T ss_pred CCeeEEEee
Confidence 345666666
No 5
>1bus_A Proteinase inhibitor IIA; HET: PCA; NMR {Bos taurus} SCOP: g.68.1.1 PDB: 2bus_A*
Probab=20.70 E-value=38 Score=18.27 Aligned_cols=24 Identities=25% Similarity=0.672 Sum_probs=17.0
Q ss_pred ccCCchhhh-hhhc-ccccccccCCC
Q psy1289 56 ESKCSPRAK-QFLC-SLLEPECQPNG 79 (87)
Q Consensus 56 ~~~Cs~~l~-~flC-s~~~P~C~~~~ 79 (87)
+..|+.+-+ ...| ..|.|+|..++
T Consensus 4 ~~~C~~~~~~~~~C~~~~~PVCGsDG 29 (57)
T 1bus_A 4 QVDCAEFKDPKVYCTRESNPHCGSNG 29 (57)
T ss_dssp CCCCSTTCTTTTSCSSCSCCEEBSSS
T ss_pred cCcCCCCCCCCCcCCCCCCCcCCCCC
Confidence 457887653 5678 48999997665
No 6
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=15.68 E-value=1e+02 Score=16.30 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=12.7
Q ss_pred cccCCCCCCCCCHHHHhhhhhhh
Q psy1289 29 ITAQPNIPGITSLSSLEAALPYF 51 (87)
Q Consensus 29 ~T~~PN~lgh~~q~e~~~~~~~f 51 (87)
.+.||.+ +.-+.+|+...+..+
T Consensus 56 ~~~Mp~~-~~Ls~~ei~~l~~yl 77 (81)
T 1a56_A 56 QIPMPPN-VNVSDADAKALADWI 77 (81)
T ss_dssp SCCBCSC-CSSSSHHHHHHHHHH
T ss_pred CCCCCCC-CCCCHHHHHHHHHHH
Confidence 3668877 665666655443333
No 7
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=11.00 E-value=1.9e+02 Score=15.02 Aligned_cols=20 Identities=10% Similarity=0.007 Sum_probs=11.0
Q ss_pred cccCCCCCCCCCHHHHhhhhhh
Q psy1289 29 ITAQPNIPGITSLSSLEAALPY 50 (87)
Q Consensus 29 ~T~~PN~lgh~~q~e~~~~~~~ 50 (87)
.+.||.+ .-+.+|+...+..
T Consensus 58 ~~~Mp~~--~ls~~ei~~l~~y 77 (82)
T 2exv_A 58 PIPMPPN--AVSDDEAQTLAKW 77 (82)
T ss_dssp SSCBCCC--CCCHHHHHHHHHH
T ss_pred CCCCCCC--CCCHHHHHHHHHH
Confidence 4568877 4455555443333
No 8
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=10.63 E-value=1.6e+02 Score=15.51 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=21.7
Q ss_pred CCCCHHHHhhhhhhhhhhhccCCchhhhhhh
Q psy1289 37 GITSLSSLEAALPYFEMIAESKCSPRAKQFL 67 (87)
Q Consensus 37 gh~~q~e~~~~~~~f~~Lv~~~Cs~~l~~fl 67 (87)
||..-++....++.+..|....=.+.++.+|
T Consensus 2 ~~m~~eeL~~DL~El~~Ll~~AkR~rVk~~L 32 (50)
T 2a26_A 2 SHMASEELQKDLEEVKVLLEKATRKRVRDAL 32 (50)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5666677778888888888776666666554
No 9
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=10.35 E-value=1.5e+02 Score=17.36 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=18.0
Q ss_pred CCCCCCCCCHHHHhhhhhhhhh
Q psy1289 32 QPNIPGITSLSSLEAALPYFEM 53 (87)
Q Consensus 32 ~PN~lgh~~q~e~~~~~~~f~~ 53 (87)
.||+.|-.+-.|+...+..|..
T Consensus 2 ~P~~~g~t~l~dvr~~l~~Wv~ 23 (97)
T 4fjo_A 2 APNLAGAVEFSDVKTLLKEWIT 23 (97)
T ss_dssp CCCBTTBCSHHHHHHHHHHHHH
T ss_pred CCcccCCcCHHHHHHHHHHHHH
Confidence 5999999998888877777764
No 10
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=9.88 E-value=1.9e+02 Score=15.21 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=17.8
Q ss_pred ccCCCCCCCCCHHHHhhhhhhhhhhh
Q psy1289 30 TAQPNIPGITSLSSLEAALPYFEMIA 55 (87)
Q Consensus 30 T~~PN~lgh~~q~e~~~~~~~f~~Lv 55 (87)
+.||.+.+.-+.+|+...+..+..|.
T Consensus 63 ~~Mp~~~~~ls~~ei~~l~~yl~~l~ 88 (93)
T 3dr0_A 63 GAMPAFGGRLSDADIANVAAYIADQA 88 (93)
T ss_dssp TTBCCCBTTBCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 56888777777777766666665554
Done!