RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy1289
         (87 letters)



>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure,
          cysteine-rich, signaling protein; 1.35A {Mus musculus}
          SCOP: a.141.1.1
          Length = 130

 Score = 52.4 bits (125), Expect = 1e-10
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 12 QCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLL 71
           C    + +C+G+  Y+ T  PN     +       +  F  + E +CSP  K FLCS+ 
Sbjct: 9  ACQEITVPLCKGI-GYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMY 67

Query: 72 EPECQPNGQNILPP 85
           P C  + +  LPP
Sbjct: 68 TPICLEDYKKPLPP 81


>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor,
          frizzled protein structure, cysteine-rich, SIG protein;
          1.90A {Mus musculus} SCOP: a.141.1.1
          Length = 127

 Score = 51.3 bits (122), Expect = 4e-10
 Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 9  GQQQCFSPHLKMCRGVTPYDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLC 68
          G   C    + +C+ + P+++T  PN    ++ ++   A+  FE +  + CSP    FLC
Sbjct: 1  GSAACEPVRIPLCKSL-PWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLC 59

Query: 69 SLLEPECQPNGQNILPP 85
          ++  P C  + Q+    
Sbjct: 60 AMYAPICTIDFQHEPIK 76


>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
           pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
           {Pseudomonas fluorescens} SCOP: c.67.1.3
          Length = 416

 Score = 28.6 bits (64), Expect = 0.18
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 36  PGITSLSSLEAALPYFEMIAESKCSPRAK-----QFLCSLLEPECQPNGQNILPP 85
             ITSL+ +E  L  F     +    R K          L+E  C  +   ++ P
Sbjct: 283 QPITSLAMVECGLDVFAQTDMASL--RRKSLALTDLFIELVEQRCAAHELTLVTP 335


>3nd1_A Precorrin-6A synthase/COBF protein; methyltransferase, deacetylase,
           transferase; HET: SAH; 1.50A {Rhodobacter capsulatus}
          Length = 275

 Score = 26.1 bits (57), Expect = 1.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 35  IPGITSLSSLEAAL 48
           IPGIT++ +L AA 
Sbjct: 159 IPGITAIQALCAAH 172


>2npn_A Putative cobalamin synthesis related protein; COBF, PSI-2, MAD,
           struc genomics, SAM, S-adenosylmethionine, MCSG; HET:
           MSE SAM; 1.60A {Corynebacterium diphtheriae}
          Length = 251

 Score = 25.6 bits (56), Expect = 2.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 35  IPGITSLSSLEAAL 48
           IPGIT++  L A  
Sbjct: 139 IPGITAVQVLTAEH 152


>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC
           transporter extracellular solute bindi protein,
           D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A*
           3oo7_A 3oo9_A 3ooa_A
          Length = 415

 Score = 25.2 bits (55), Expect = 3.0
 Identities = 10/50 (20%), Positives = 18/50 (36%)

Query: 27  YDITAQPNIPGITSLSSLEAALPYFEMIAESKCSPRAKQFLCSLLEPECQ 76
            D    P I        ++A    F +  + K +  AK+ L  +   E +
Sbjct: 279 LDFFVFPAINPQYGTDYMDAPTDGFILPKKGKNAAAAKKVLQYIGTAEAE 328


>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter
           thermautotrophicusorganism_taxid}
          Length = 232

 Score = 24.2 bits (53), Expect = 5.8
 Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 5/23 (21%)

Query: 26  PYDITAQPNIPGITSLSSLEAAL 48
             ++     +PG+TS ++  A  
Sbjct: 124 KTEM-----VPGVTSFTACAATA 141


>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine
           biosynthesis,oxidoreductase, structural GE PSI; 2.01A
           {Pseudomonas aeruginosa}
          Length = 328

 Score = 24.0 bits (53), Expect = 7.6
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 4/35 (11%)

Query: 25  TPYDITAQPNIPGITSLSSLEAALPYFEMIAESKC 59
           T  D+       G     SL+ AL     +A S+C
Sbjct: 298 TALDLAGS----GRIDSGSLQVALETAYQMAASRC 328


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,238,067
Number of extensions: 57454
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 10
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)