BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12891
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 127/433 (29%), Positives = 199/433 (45%), Gaps = 66/433 (15%)
Query: 72 TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ 131
TP+H A+ G+L ++ LL+ G P N ETPLH+A+R EV L+Q ++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-----NK 70
Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHE 191
K VN+ +D + LH A ++ + VKLLLE A+ +L T H
Sbjct: 71 AK----VNAKAKDDQTPLHCAARIGHTNM-----------VKLLLENNANPNLATTAGH- 114
Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
T H A G+ + + +LE+ E S+A T G+TPL +A G + + +L
Sbjct: 115 TPLHIAAREGHVETVLALLEK----EASQAC--MTKKGFTPLHVAAKYGKVRVAELLLER 168
Query: 252 HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLP----PHNIIPNGFLVHDH 307
A + + G + LH+A H L ++ LP PH+ NG+
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNL----------DIVKLLLPRGGSPHSPAWNGY----- 213
Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 367
TPLH+AA+ Q++V + LL G S +A QG P+H+AAQ E+
Sbjct: 214 ------------TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV 261
Query: 368 QIFL--RAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPL 425
+ L +A+ +L K G T H+ A +G V V + L+K GV+ TPL
Sbjct: 262 ALLLSKQANGNL---GNKSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPL 315
Query: 426 QLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK 485
+A+ G+ +V+ L++ A + K G++ +H AAQ GH ++ + + A
Sbjct: 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375
Query: 486 LGVTALHVAAYFG 498
G T L +A G
Sbjct: 376 DGTTPLAIAKRLG 388
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/384 (29%), Positives = 188/384 (48%), Gaps = 47/384 (12%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
VK LL+ GA ++ + ET H A AG+ +V +L+ + +KA + QT
Sbjct: 30 VKNLLQRGASPNVSNVKV-ETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQT----- 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFR 291
PL A GH +V +L N+A ++ G + LH+AA G+++ +V++
Sbjct: 83 PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE---------TVLALL 133
Query: 292 LPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQG 351
+ A +T + TPLH+AA+ G+++V +LLL+ A +A G
Sbjct: 134 --------------EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179
Query: 352 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG 411
P+HVA +N ++ ++ L S + +G T HIAA Q V V L+++ S
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS- 237
Query: 412 VISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
+ V TPL LAA+ GHA +V +L+ A+ NK+G T +HL AQ GH V +
Sbjct: 238 --ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 295
Query: 472 EMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE 531
+ + + ++G T LHVA+++G V+ LL H ++D ++
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-----QADV--------NAKTK 342
Query: 532 SGMTPLHLAAYSGNENVVRLLLNS 555
G +PLH AA G+ ++V LLL +
Sbjct: 343 LGYSPLHQAAQQGHTDIVTLLLKN 366
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 183/404 (45%), Gaps = 65/404 (16%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLT--------NIAARVKDGDRCALMLLKSGAG 62
ETPLH+AAR + A LL++ A N + AAR+ + L LL++ A
Sbjct: 48 ETPLHMAARAGHTE-VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL-LLENNAN 105
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
PNL T G TP+H AA+ G++ T+ LLE K G TPLH+A++ K V +LL
Sbjct: 106 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
++ + N+ ++G + LH A ++ VKLLL G
Sbjct: 166 LERD---------AHPNAAGKNGLTPLHVAVHHNNLDI-----------VKLLLPRGGSP 205
Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
N T H A +V +L Q G+ N ++ G TPL +A GH
Sbjct: 206 H-SPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSA-----NAESVQGVTPLHLAAQEGHA 258
Query: 243 ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGF 302
E+V +L+ A ++ ++ G + LHL A+ G++ V+ +KH VM
Sbjct: 259 EMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD-VLIKHGVM-------------- 303
Query: 303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 362
+D T TPLH+A+ G +++ K LL A ++A G P+H AAQ
Sbjct: 304 --------VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG 355
Query: 363 FPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
++ + L+ A P+ V++ DG T IA G + V + L
Sbjct: 356 HTDIVTLLLKNGASPNEVSS---DGTTPLAIAKRLGYISVTDVL 396
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 119/240 (49%), Gaps = 21/240 (8%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLH+A+ G L + K LL GAS + ++ + + P+H+AA+ EVA+ L+ + + V
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVN 74
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA--TPLQLAAEGGHANVV 437
A KD T H AA G +++ L++ + + N T A TPL +AA GH V
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNAN-----PNLATTAGHTPLHIAAREGHVETV 129
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYF 497
L++ AS K GFT +H+AA+ G +V E + A + K G+T LHVA +
Sbjct: 130 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 189
Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 557
D V+ LL P G S + +G TPLH+AA V R LL G
Sbjct: 190 NNLDIVKLLL-----------PRGGS--PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 35/250 (14%)
Query: 6 SGKLRETPLHIAARVKDGDRCALMLLKSGA-------GPNLTNIAARVKDGDRCALMLLK 58
+GK TPLH+A + D L+L + G+ G +IAA+ ++ A LL+
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQ 233
Query: 59 SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
G N + G TP+H AA+ G+ + LLL + NK G TPLHL ++ V
Sbjct: 234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV 293
Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
D+LI + V+ V++ G + LH A +L VK LL+
Sbjct: 294 ADVLI-------KHGVM--VDATTRMGYTPLHVASHYGNIKL-----------VKFLLQH 333
Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
ADV+ +TK + + H A G+ D++T +L+ + N+ +S G TPL IA
Sbjct: 334 QADVNAKTKLGY-SPLHQAAQQGHTDIVTLLLKNGASP------NEVSSDGTTPLAIAKR 386
Query: 239 RGHMELVNTM 248
G++ + + +
Sbjct: 387 LGYISVTDVL 396
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL +A+ GH +V+ L++ GAS N T +H+AA+ GH +V + + +KA
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
K T LH AA G + V+ LL + ++P L + +G TPLH+AA
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLEN-----NANP--------NLATTAGHTPLHIAAR 122
Query: 543 SGNENVVRLLLNSAGVQ 559
G+ V LL Q
Sbjct: 123 EGHVETVLALLEKEASQ 139
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 81/127 (63%), Gaps = 4/127 (3%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L A V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
A K+G T H+AA G + V++ L+ + ++A+++ TPL LAA GH VV+
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL--EAGADVNAKDK-NGRTPLHLAARNGHLEVVK 118
Query: 439 VLVKAGA 445
+L++AGA
Sbjct: 119 LLLEAGA 125
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 21/143 (14%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
+G+TP+H AA+ G+L ++LLLE G D K+K G TPLHLA+RN EVV LL++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
VN+ +++G + LH A + E+ VKLLLEAGADV+ + K
Sbjct: 61 ---------VNAKDKNGRTPLHLAARNGHLEV-----------VKLLLEAGADVNAKDK- 99
Query: 189 NHETAFHYCAVAGNNDVLTGMLE 211
N T H A G+ +V+ +LE
Sbjct: 100 NGRTPLHLAARNGHLEVVKLLLE 122
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 76/122 (62%), Gaps = 4/122 (3%)
Query: 350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 409
G+ P+H+AA+N EV ++ L A V A K+G T H+AA G + V++ L+ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL--EA 57
Query: 410 SGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV 469
++A+++ TPL LAA GH VV++L++AGA ++K G T +HLAA+NGH +V
Sbjct: 58 GADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Query: 470 LE 471
++
Sbjct: 117 VK 118
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 76/133 (57%), Gaps = 13/133 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA GH VV++L++AGA ++K G T +HLAA+NGH +V++ + + A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
K G T LH+AA G + V+ LL GA + ++G TPLHLAA
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLE-----------AGADVNAK--DKNGRTPLHLAAR 110
Query: 543 SGNENVVRLLLNS 555
+G+ VV+LLL +
Sbjct: 111 NGHLEVVKLLLEA 123
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 73/126 (57%), Gaps = 20/126 (15%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LL++GA N +G+TP+H AA+ G+L ++LLLE G D K+K G TPLHLA+RN
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
EVV LL++ + VN+ +++G + LH A + E+ VKL
Sbjct: 80 HLEVVKLLLEAGAD---------VNAKDKNGRTPLHLAARNGHLEV-----------VKL 119
Query: 175 LLEAGA 180
LLEAGA
Sbjct: 120 LLEAGA 125
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
+G T H+AA G + V++ L+ + ++A+++ TPL LAA GH VV++L++A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL--EAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA 57
Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV 503
GA ++K G T +HLAA+NGH +V++ + + A K G T LH+AA G + V
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 504 RELLS 508
+ LL
Sbjct: 118 KLLLE 122
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 7/108 (6%)
Query: 170 KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIG 229
+ VKLLLEAGADV+ + K N T H A G+ +V+ +LE +G ++ N + G
Sbjct: 16 EVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE--AGADV----NAKDKNG 68
Query: 230 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 78/147 (53%), Gaps = 27/147 (18%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+RN EVV LL++ + VN+ +++G + LH A + E+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD---------VNAKDKNGRTPLHLAARNGHLEV-- 50
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
VKLLLEAGADV+ + K N T H A G+ +V+ +LE +G ++
Sbjct: 51 ---------VKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE--AGADV---- 94
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTML 249
N + G TPL +A GH+E+V +L
Sbjct: 95 NAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 29/154 (18%)
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
N T H A G+ +V+ +LE +G ++ N + G TPL +A GH+E+V +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE--AGADV----NAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
L A V+ D+ GR+ LHLAA +G+L+V L+ +
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEVVK-----------------------LLLEAG 91
Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
A ++ +TPLHLAA G L+V KLLL+ GA
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 14/113 (12%)
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
G T +HLAA+NGH +V++ + + A K G T LH+AA G + V+ LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---- 56
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565
GA + ++G TPLHLAA +G+ VV+LLL AG V+A+ +
Sbjct: 57 -------AGADVNAK--DKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDK 99
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 86/147 (58%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A DDQG P+H+AA PE+ ++ L+ H + V A D
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLK-HGADVNARDTD 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H+AA G + ++E L+K+ ++A++ TPL LAA+ GH +V VL+K G
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKY--GADVNAQDAYG-LTPLHLAADRGHLEIVEVLLKHG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 24/175 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D +G + LHLAA G+ ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ H A ++ TPLHLAA+ G L++ ++LL GA ++A D G
Sbjct: 65 ----------VLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGL 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
P+H+AA E+ ++ L+ H + V A K G T I+ G+ + E L K
Sbjct: 115 TPLHLAADRGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N D G TP+H AA G+ +++LL+ G D ++
Sbjct: 21 AARAGQDDEVRI-LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+ N E+V++L+++ + VN+ + G + LH A E+
Sbjct: 80 GWTPLHLAADNGHLEIVEVLLKYGAD---------VNAQDAYGLTPLHLAADRGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKHGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ Q T H A G+ +++ +L+ G ++ N + + GWT
Sbjct: 30 VRILMANGADVNAHDDQG-STPLHLAAWIGHPEIVEVLLKH--GADV----NARDTDGWT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A + GH+E+V +L A V+ D G + LHLAA+ G+L++
Sbjct: 83 PLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEI 128
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 60/197 (30%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ G +++L+ +G D + G TPLHLA+ E+V++L++ +
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-------- 72
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VN+ + DG + LH A E+ V++LL+ GADV
Sbjct: 73 -VNARDTDGWTPLHLAADNGHLEI-----------VEVLLKYGADV-------------- 106
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
N Q + G TPL +A +RGH+E+V +L + A V+
Sbjct: 107 --------------------------NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 257 VFDQEGRSALHLAAEHG 273
D+ G++A ++ ++G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA + G T +HLAA GH +++E + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V LL + D G+TPLHLAA G+
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDA-------------YGLTPLHLAADRGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDG--------DRCAL----MLLKS 59
TPLH+AA + + +LLK GA ++ AR DG D L +LLK
Sbjct: 49 TPLHLAAWIGHPE-IVEVLLKHGA-----DVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
GA N G TP+H AA G+L +++LL+ G D ++K G+T ++ N ++
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 120 DLL 122
++L
Sbjct: 163 EIL 165
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L AA GQ D VR L+++ D +
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILMANGADVNAHD-------------DQ 46
Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
G TPLHLAA+ G+ +V +LL G V+A+ +
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKH-GADVNARDTD 79
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D G P+H+AA+ E+ ++ L+A V A KD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKD 67
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H+AA +G + ++E L+K ++A+++ TPL LAA GH +V VL+KAG
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKA--GADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS 476
A ++K G T LA + GH + E ++ +
Sbjct: 125 ADVNAQDKFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 4/124 (3%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHLAA G L++ ++LL GA ++A D G P+H+AA+ E+ ++ L+A V
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 95
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
A KDG T H+AA +G + ++E L+K ++A+++ + TP LA GH ++ V
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAQDKFGK-TPFDLAIREGHEDIAEV 152
Query: 440 LVKA 443
L KA
Sbjct: 153 LQKA 156
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N DG TP+H AA+ G+L +++LL+ G D K+K
Sbjct: 9 AARAGQDDEVRI-LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+R E+V++L++ + VN+ ++DG + LH A + E+
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGAD---------VNAKDKDGYTPLHLAAREGHLEI-- 116
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+AGADV+ Q K +T F G+ D+
Sbjct: 117 ---------VEVLLKAGADVNAQDKFG-KTPFDLAIREGHEDI 149
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA GH +V VL+KAGA ++K G+T +HLAA+ GH +++E + + A
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
K G T LH+AA G + V LL GA + + G TP LA
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLK-----------AGADVNAQ--DKFGKTPFDLAIR 143
Query: 543 SGNENVVRLLLNSA 556
G+E++ +L +A
Sbjct: 144 EGHEDIAEVLQKAA 157
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D++G + LHLAA G+L++ ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVE------VLLKAGA 59
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
+ +G+ TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 60 DVNAKDKDGY-----------------TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406
P+H+AA+ E+ ++ L+A V A K G T +A +G + E L K
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 89/172 (51%), Gaps = 27/172 (15%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ G +++L+ +G D K+K G TPLHLA+R E+V++L++ +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-------- 60
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VN+ ++DG + LH A + E+ V++LL+AGADV+ + K + T H
Sbjct: 61 -VNAKDKDGYTPLHLAAREGHLEI-----------VEVLLKAGADVNAKDKDGY-TPLHL 107
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
A G+ +++ +L+ +G ++ N Q G TP +A GH ++ +
Sbjct: 108 AAREGHLEIVEVLLK--AGADV----NAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA ++K G+T +HLAA+ GH +++E + + A K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V LL GA + + G TPLHLAA G+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLK-----------AGADVNAK--DKDGYTPLHLAAREGHLE 115
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL AG V+AQ +
Sbjct: 116 IVEVLL-KAGADVNAQDK 132
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 63/106 (59%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ + K + T H A G+ +++ +L+ +G ++ N + G+T
Sbjct: 18 VRILMANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLK--AGADV----NAKDKDGYT 70
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A GH+E+V +L A V+ D++G + LHLAA G+L++
Sbjct: 71 PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 18/142 (12%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
VN+ ++DG + LH A + E+ V++LL+AGADV+ + K + T H
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEI-----------VEVLLKAGADVNAKDKDGY-TPLHLA 75
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
A G+ +++ +L+ +G ++ N + G+TPL +A GH+E+V +L A V+
Sbjct: 76 AREGHLEIVEVLLK--AGADV----NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 258 FDQEGRSALHLAAEHGYLKVSS 279
D+ G++ LA G+ ++
Sbjct: 130 QDKFGKTPFDLAIREGHEDIAE 151
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 20/124 (16%)
Query: 12 TPLHIAARVKDGD-RCALMLLKSGAGPNLTNIAARVKDGD------------RCALMLLK 58
TPLH+AAR +G +LLK+GA ++ A+ KDG +LLK
Sbjct: 37 TPLHLAAR--EGHLEIVEVLLKAGA-----DVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 59 SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
+GA N DG TP+H AA+ G+L +++LL+ G D ++K G+TP LA R ++
Sbjct: 90 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 119 VDLL 122
++L
Sbjct: 150 AEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D G P+H+AA+ E+ ++ L+A V A KD
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKD 67
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H+AA +G + ++E L+K ++A+++ TPL LAA GH +V VL+KAG
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLK--AGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS 476
A ++K G T LA NG+ + E ++ +
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHLAA G L++ ++LL GA ++A D G P+H+AA+ E+ ++ L+A V
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VN 95
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
A KDG T H+AA +G + ++E L+K ++A+++ + TP LA + G+ ++ V
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLK--AGADVNAQDKFGK-TPFDLAIDNGNEDIAEV 152
Query: 440 LVKA 443
L KA
Sbjct: 153 LQKA 156
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N DG TP+H AA+ G+L +++LL+ G D K+K
Sbjct: 9 AARAGQDDEVRI-LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 67
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+R E+V++L++ + VN+ ++DG + LH A + E+
Sbjct: 68 GYTPLHLAAREGHLEIVEVLLKAGAD---------VNAKDKDGYTPLHLAAREGHLEI-- 116
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+AGADV+ Q K +T F GN D+
Sbjct: 117 ---------VEVLLKAGADVNAQDKFG-KTPFDLAIDNGNEDI 149
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA GH +V VL+KAGA ++K G+T +HLAA+ GH +++E + + A
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
K G T LH+AA G + V LL GA + + G TP LA
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLLK-----------AGADVNAQ--DKFGKTPFDLAID 143
Query: 543 SGNENVVRLLLNSA 556
+GNE++ +L +A
Sbjct: 144 NGNEDIAEVLQKAA 157
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 24/174 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D++G + LHLAA G+L++ ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVE------VLLKAGA 59
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
+ +G+ TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 60 DVNAKDKDGY-----------------TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY 102
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406
P+H+AA+ E+ ++ L+A V A K G T +A G+ + E L K
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA ++K G+T +HLAA+ GH +++E + + A K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V LL GA + + G TPLHLAA G+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLK-----------AGADVNAK--DKDGYTPLHLAAREGHLE 115
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL AG V+AQ +
Sbjct: 116 IVEVLL-KAGADVNAQDK 132
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%), Gaps = 6/105 (5%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK+GA N DG TP+H AA+ G+L +++LL+ G D K+K G TPLHLA+R
Sbjct: 53 VLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 112
Query: 115 KAEVVDLLIQFVQNI-SQEKVLEY-----VNSVNEDGASALHYAC 153
E+V++L++ ++ +Q+K + +++ NED A L A
Sbjct: 113 HLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 63/106 (59%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ + K + T H A G+ +++ +L+ +G ++ N + G+T
Sbjct: 18 VRILMANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLK--AGADV----NAKDKDGYT 70
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A GH+E+V +L A V+ D++G + LHLAA G+L++
Sbjct: 71 PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 74/136 (54%), Gaps = 18/136 (13%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
VN+ ++DG + LH A + E+ V++LL+AGADV+ + K + T H
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEI-----------VEVLLKAGADVNAKDKDGY-TPLHLA 75
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
A G+ +++ +L+ +G ++ N + G+TPL +A GH+E+V +L A V+
Sbjct: 76 AREGHLEIVEVLLK--AGADV----NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129
Query: 258 FDQEGRSALHLAAEHG 273
D+ G++ LA ++G
Sbjct: 130 QDKFGKTPFDLAIDNG 145
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 85/147 (57%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D G P+H+AA+ E+ ++ L+A V A KD
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKD 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H+AA +G + ++E L+K ++A+++ TPL LAA GH +V VL+KAG
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLK--AGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N DG TP+H AA+ G+L +++LL+ G D K+K
Sbjct: 21 AARAGQDDEVRI-LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+R E+V++L++ + VN+ ++DG + LH A + E+
Sbjct: 80 GYTPLHLAAREGHLEIVEVLLKAGAD---------VNAKDKDGYTPLHLAAREGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+AGADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKAGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA ++K G+T +HLAA+ GH +++E + + A K G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V LL GA + + G TPLHLAA G+
Sbjct: 81 YTPLHLAAREGHLEIVEVLLK-----------AGADVNAK--DKDGYTPLHLAAREGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL AG V+AQ +
Sbjct: 128 IVEVLL-KAGADVNAQDK 144
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA GH +V VL+KAGA ++K G+T +HLAA+ GH +++E + + A
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
K G T LH+AA G + V LL GA + + G T ++
Sbjct: 109 KDKDGYTPLHLAAREGHLEIVEVLLK-----------AGADVNAQ--DKFGKTAFDISID 155
Query: 543 SGNENVVRLL 552
+GNE++ +L
Sbjct: 156 NGNEDLAEIL 165
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 63/106 (59%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ + K + T H A G+ +++ +L+ +G ++ N + G+T
Sbjct: 30 VRILMANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLK--AGADV----NAKDKDGYT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A GH+E+V +L A V+ D++G + LHLAA G+L++
Sbjct: 83 PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 128
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 75/136 (55%), Gaps = 18/136 (13%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
VN+ ++DG + LH A + E+ V++LL+AGADV+ + K + T H
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEI-----------VEVLLKAGADVNAKDKDGY-TPLHLA 87
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
A G+ +++ +L+ +G ++ N + G+TPL +A GH+E+V +L A V+
Sbjct: 88 AREGHLEIVEVLLK--AGADV----NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 141
Query: 258 FDQEGRSALHLAAEHG 273
D+ G++A ++ ++G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 20/124 (16%)
Query: 12 TPLHIAARVKDGD-RCALMLLKSGAGPNLTNIAARVKDGD------------RCALMLLK 58
TPLH+AAR +G +LLK+GA ++ A+ KDG +LLK
Sbjct: 49 TPLHLAAR--EGHLEIVEVLLKAGA-----DVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 59 SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
+GA N DG TP+H AA+ G+L +++LL+ G D ++K G+T ++ N ++
Sbjct: 102 AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 119 VDLL 122
++L
Sbjct: 162 AEIL 165
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 118/246 (47%), Gaps = 26/246 (10%)
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
K++PLH AAEAG + +C +L+ GA+ID + + P+ AA+NN E + ++A +L
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA-GAL 69
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
V +G+TC H+AA +G V++ L+ + V + TP+ A E H ++V
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD--GGWTPMIWATEYKHVDLV 127
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK----ALNVYSKKLGVTALHV 493
++L+ G+ + +H AA +G + E + ++K A+N++ G + LH+
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH----GDSPLHI 183
Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
AA + D V LS L ++ G TPL A S N V L
Sbjct: 184 AARENRYDCVVLFLSRDSDVT-------------LKNKEGETPLQCA--SLNSQVWSALQ 228
Query: 554 NSAGVQ 559
S +Q
Sbjct: 229 MSKALQ 234
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 101/263 (38%), Gaps = 65/263 (24%)
Query: 252 HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVI 311
H + Q RS LH AAE G++ + H ++ G A I
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDIC----------------HMLVQAG-------ANI 37
Query: 312 DILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
D + ++TPL AAE L+ K L+ GA +D D +G +H+AA+ EV Q L
Sbjct: 38 DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Query: 372 R-----------------------AHPSLVTATTKDG----------NTCAHIAAMQGSV 398
H LV G N C H AA G V
Sbjct: 98 SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157
Query: 399 GVIEELM--KFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFT 456
+ E L+ K D V + +PL +AA + V + + + T +NK G T
Sbjct: 158 DIAEILLAAKCDLHAV-----NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212
Query: 457 AVHLAAQNGHNQVLEEMRSSKAL 479
+ A+ N +QV ++ SKAL
Sbjct: 213 PLQCASLN--SQVWSALQMSKAL 233
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 113/267 (42%), Gaps = 55/267 (20%)
Query: 98 YKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTK 157
++NK +PLH A+ ++ +L+Q NI ++ +ED + L A +
Sbjct: 8 HQNK--RSPLHAAAEAGHVDICHMLVQAGANI---------DTCSEDQRTPLMEAAENNH 56
Query: 158 AELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLE--QMSG 215
E VK L++AGA V + + T H A G+ +V+ +L QM
Sbjct: 57 LE-----------AVKYLIKAGALVDPKDAEG-STCLHLAAKKGHYEVVQYLLSNGQMD- 103
Query: 216 TEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYL 275
+N Q GWTP++ A H++LV +L+ + +++ D E LH AA G +
Sbjct: 104 ------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157
Query: 276 KVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 335
++ +++ + H + +G +PLH+AA +
Sbjct: 158 DIAE------ILLAAKCDLHAVNIHG-----------------DSPLHIAARENRYDCVV 194
Query: 336 LLLDLGASIDATDDQGQKPIHVAAQNN 362
L L + + + +G+ P+ A+ N+
Sbjct: 195 LFLSRDSDVTLKNKEGETPLQCASLNS 221
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 30/218 (13%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGG--DPMYKNKIGETPLHLASR 112
ML+++GA + ++D +TP+ AA+ +L ++ L++ G DP K+ G T LHLA++
Sbjct: 29 MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP--KDAEGSTCLHLAAK 86
Query: 113 NCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTV 172
EVV L+ Q VN ++ G + + +A + +L V
Sbjct: 87 KGHYEVVQYLLSNGQ--------MDVNCQDDGGWTPMIWATEYKHVDL-----------V 127
Query: 173 KLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTP 232
KLLL G+D++++ + + H+ A +G D+ +L A+N G +P
Sbjct: 128 KLLLSKGSDINIRDNEEN-ICLHWAAFSGCVDIAEILLAAKCDLH---AVNIH---GDSP 180
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAA 270
L IA + V L+ + V + ++EG + L A+
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 19/147 (12%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGA---SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479
+PL AAE GH ++ +LV+AGA +C+++ +T AA+N H + ++ + + AL
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME---AAENNHLEAVKYLIKAGAL 69
Query: 480 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
G T LH+AA G + V+ LLS+ V + G TP+
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ------------DDGGWTPMIW 117
Query: 540 AAYSGNENVVRLLLNSAGVQVDAQTQE 566
A + ++V+LLL S G ++ + E
Sbjct: 118 ATEYKHVDLVKLLL-SKGSDINIRDNE 143
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNL----TNIAARVKDGDRC---ALMLLKSGAGPN 64
TP+ A K D L+L K G+ N+ NI C A +LL + +
Sbjct: 113 TPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH 171
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
G +P+H AA+ + L L D KNK GETPL AS N
Sbjct: 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 20/162 (12%)
Query: 27 ALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTL 86
AL+ K G ++AA+ + +L N D G TP+ A +Y ++ +
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 87 QLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGA 146
+LLL G D ++ LH A+ + ++ ++L+ ++ ++VN G
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL---------HAVNIHGD 178
Query: 147 SALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
S LH A + + + V L L +DV+L+ K+
Sbjct: 179 SPLHIAARENRYD-----------CVVLFLSRDSDVTLKNKE 209
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D+ G P+H+AA + E+ ++ L+ H + V A
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK-HGADVDAADVY 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H+AAM G + ++E L+K+ G +T +TPL LAA+ GH +V VL+K G
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKY---GADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
A ++K G TA ++ NG+ + + R+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAKSCRN 167
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 24/165 (14%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA G+L++
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ H A +D + TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 65 ----------VLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS 397
P+H+AA E+ ++ L+ + + V A K G T I+ G+
Sbjct: 115 TPLHLAADEGHLEIVEVLLK-YGADVNAQDKFGKTAFDISIDNGN 158
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N + G TP+H AA G+L +++LL+ G D +
Sbjct: 21 AARAGQDDEVRI-LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+ E+V++L+++ + VN+ + G++ LH A E+
Sbjct: 80 GFTPLHLAAMTGHLEIVEVLLKYGAD---------VNAFDMTGSTPLHLAADEGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKYGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 5/156 (3%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V A G T H+AA+ G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
G V TPL LAA GH +V VL+K GA + TG T +HLAA GH +
Sbjct: 69 -HGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLE 127
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVR 504
++E + A K G TA ++ G D +
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAK 163
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA + TG T +HLAA +GH +++E + A + G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V LL + D +G TPLHLAA G+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDM-------------TGSTPLHLAADEGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKY-GADVNAQDK 144
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ T H AV+G+ +++ +L+ G ++ A G+T
Sbjct: 30 VRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKH--GADVDAA----DVYGFT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A GH+E+V +L A V+ FD G + LHLAA+ G+L++
Sbjct: 83 PLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEI 128
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 60/197 (30%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ G +++L+ +G D + G TPLHLA+ + E+V++L++ ++ V
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY- 79
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
G + LH A E+ V++LL+ GADV+ AF
Sbjct: 80 --------GFTPLHLAAMTGHLEI-----------VEVLLKYGADVN---------AF-- 109
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
M+G+ TPL +A + GH+E+V +L A V+
Sbjct: 110 ---------------DMTGS--------------TPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 257 VFDQEGRSALHLAAEHG 273
D+ G++A ++ ++G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L AA GQ D VR L+++ D +
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILIANGADVNAVD-------------NT 46
Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
G+TPLHLAA SG+ +V +LL G VDA
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKH-GADVDA 75
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D G P+H+ N E+ ++ L+ + + V A+ K
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLK-YAADVNASDKS 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H+AA +G + ++E L+K+ G TPL LAAE GH +V VL+K G
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKY---GADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHL +G+L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ +AA ++ TPLHLAA G L++ ++LL GA ++A D QG
Sbjct: 65 ----------VLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGY 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
P+H+AA++ E+ ++ L+ + + V A K G T I+ G+ + E L K +
Sbjct: 115 TPLHLAAEDGHLEIVEVLLK-YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 69/123 (56%), Gaps = 4/123 (3%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHL G L++ ++LL A ++A+D G P+H+AA E+ ++ L+ + + V
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK-YGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
A G T H+AA G + ++E L+K+ ++A+++ + T ++ + G+ ++ +
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD--VNAQDKFGK-TAFDISIDNGNEDLAEI 164
Query: 440 LVK 442
L K
Sbjct: 165 LQK 167
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA + G T +HL NGH +++E + A S K G
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AAY G + V LL + D G TPLHLAA G+
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDY-------------QGYTPLHLAAEDGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 128 IVEVLL-KYGADVNAQDK 144
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N G TP+H G+L +++LL+ D +K
Sbjct: 21 AARAGQDDEVRI-LMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKS 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+ E+V++L+++ + VN+++ G + LH A + E+
Sbjct: 80 GWTPLHLAAYRGHLEIVEVLLKYGAD---------VNAMDYQGYTPLHLAAEDGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKYGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ T H G+ +++ +L+ + +N GWT
Sbjct: 30 VRILMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKY------AADVNASDKSGWT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A RGH+E+V +L A V+ D +G + LHLAAE G+L++
Sbjct: 83 PLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEI 128
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 60/197 (30%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ G +++L+ +G D + G TPLHL N E++++L+++ +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD-------- 72
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VN+ ++ G + LH A E+ V++LL+ GADV+ Q
Sbjct: 73 -VNASDKSGWTPLHLAAYRGHLEI-----------VEVLLKYGADVNAMDYQ-------- 112
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
G+TPL +A GH+E+V +L A V+
Sbjct: 113 --------------------------------GYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 257 VFDQEGRSALHLAAEHG 273
D+ G++A ++ ++G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK GA N G TP+H AA+ G+L +++LL+ G D ++K G+T ++ N
Sbjct: 98 VLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 158 NEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D G P+H+AA+ E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFS 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G+T H+AA +G + ++E L+K+ G + +TPL LAA+ GH +V VL+K G
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKY---GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N G TP+H AA+ G+L +++LL++G D +
Sbjct: 21 AARAGQDDEVRI-LMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA++ E+V++L+++ +++ + + G++ LH A E+
Sbjct: 80 GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI---------GSTPLHLAADTGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKYGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 24/172 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA G+L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ NG A ++ L TPLHLAA+ G L++ ++LL GA ++A D G
Sbjct: 65 ---VLLKNG-------ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGS 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
P+H+AA E+ ++ L+ + + V A K G T I+ G+ + E L
Sbjct: 115 TPLHLAADTGHLEIVEVLLK-YGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V A G+T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
+G + +TPL LAA+ GH +V VL+K GA ++ G T +HLAA GH +
Sbjct: 69 -NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLE 127
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 60/197 (30%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ G +++L+ +G D ++ G+TPLHLA+R E+V++L++ +
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD-------- 72
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VN+++ G++ LH A + E+ V++LL+ GADV
Sbjct: 73 -VNALDFSGSTPLHLAAKRGHLEI-----------VEVLLKYGADV-------------- 106
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
N +IG TPL +A + GH+E+V +L A V+
Sbjct: 107 --------------------------NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 257 VFDQEGRSALHLAAEHG 273
D+ G++A ++ ++G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA E+ G T +HLAA+ GH +++E + + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V LL + V +D G+ TPLHLAA +G+
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGS------------TPLHLAADTGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKY-GADVNAQDK 144
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ + +T H A G+ +++ +L+ +G ++ N G T
Sbjct: 30 VRILMANGADVNAEDTYG-DTPLHLAARVGHLEIVEVLLK--NGADV----NALDFSGST 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A RGH+E+V +L A V+ D G + LHLAA+ G+L++
Sbjct: 83 PLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEI 128
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 8/119 (6%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARV------KDGD-RCALMLLKSGAGP 63
+TPLH+AARV + +LLK+GA N + + K G +LLK GA
Sbjct: 48 DTPLHLAARVGHLEIVE-VLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N G TP+H AA G+L +++LL+ G D ++K G+T ++ N ++ ++L
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 150/363 (41%), Gaps = 68/363 (18%)
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW--TPLLIACNRGHMELVNTMLNNHARV 255
A +GN + L +L ++ +N S G TPL +A + +V +L + A V
Sbjct: 32 ARSGNEEKLMALLTPLN-------VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Query: 256 DVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
D+ G LH A +G+ +V+ L+ H A ++ +
Sbjct: 85 HAKDKGGLVPLHNACSYGHYEVTE-----------------------LLLKHGACVNAMD 121
Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
L + TPLH AA +++VC LLL GA + G+ + +A E + H
Sbjct: 122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHS 181
Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435
L A D +A ++ ++ + +I+ + + T L A H
Sbjct: 182 LLQAAREAD------LAKVKKTLAL----------EIINFKQPQSHETALHCAVASLHPK 225
Query: 436 ---VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALH 492
V +L++ GA+ ++NK T +H+AA+ HN V+E + A LG TALH
Sbjct: 226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285
Query: 493 VAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL 552
AA G T R LLS+ SDP + S G T AA GNE V ++L
Sbjct: 286 RAALAGHLQTCRLLLSY-----GSDP--------SIISLQGFT----AAQMGNEAVQQIL 328
Query: 553 LNS 555
S
Sbjct: 329 SES 331
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 120/268 (44%), Gaps = 42/268 (15%)
Query: 47 KDGDRCALMLLKSGAGPNLTTDDGQ--TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGE 104
+ G+ LM L + N DG+ TP+H AA Y + +QLLL+ G D K+K G
Sbjct: 33 RSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGL 92
Query: 105 TPLHLASRNCKAEVVDLLI------------QF--VQNISQEKVLEYVNSVNEDGASALH 150
PLH A EV +LL+ QF + + + +E + + GA
Sbjct: 93 VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152
Query: 151 YACQVTKA-ELIPITSKEDQKTVKL----LLEAGAD--------------VSLQTKQNHE 191
C A ++ P ++ T + LL+A + ++ + Q+HE
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212
Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKA--LNKQTSIGWTPLLIACNRGHMELVNTML 249
TA H CAVA L +Q++ + K +N++ TPL +A R H +++ +
Sbjct: 213 TALH-CAVAS----LHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267
Query: 250 NNHARVDVFDQEGRSALHLAAEHGYLKV 277
+ A+++ D G++ALH AA G+L+
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQT 295
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 109/259 (42%), Gaps = 39/259 (15%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
+K L A + ++ LL L + A+D + P+H+AA N + Q+ L+ H +
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGA 82
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 436
V A K G H A G V E L+K ++A + + + TPL AA V
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLK--HGACVNAMD-LWQFTPLHEAASKNRVEV 139
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQ-----------NGHNQV-------LEEMRSSKA 478
+L+ GA T N G +AV +A GH+ + L +++ + A
Sbjct: 140 CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLA 199
Query: 479 LNVYSKKLGV---TALH--VAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESG 533
L + + K TALH VA+ + V ELL V ++
Sbjct: 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEK------------NKDF 247
Query: 534 MTPLHLAAYSGNENVVRLL 552
MTPLH+AA + +V+ +L
Sbjct: 248 MTPLHVAAERAHNDVMEVL 266
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 43/96 (44%), Gaps = 11/96 (11%)
Query: 11 ETPLHIAARVKDGDR--CALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSG 60
ET LH A R A +LL+ GA N N +AA D +L K G
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND-VMEVLHKHG 270
Query: 61 AGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDP 96
A N GQT +H AA G+L T +LLL G DP
Sbjct: 271 AKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDP 306
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%)
Query: 53 ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
A +LL+ GA N D TP+H AA+ + +++L + G + +G+T LH A+
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289
Query: 113 NCKAEVVDLLIQF 125
+ LL+ +
Sbjct: 290 AGHLQTCRLLLSY 302
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 425 LQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV-LEEMRSSKALNVYS 483
L+ A G ++ +L +C + T +HLAA G+N+V + ++ +V++
Sbjct: 29 LEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA--GYNRVRIVQLLLQHGADVHA 86
Query: 484 K-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
K K G+ LH A +G + LL H D L + TPLH AA
Sbjct: 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD-------LWQF------TPLHEAAS 133
Query: 543 SGNENVVRLLLN 554
V LLL+
Sbjct: 134 KNRVEVCSLLLS 145
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 71/135 (52%), Gaps = 13/135 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAAE GH VV++L+ GA ++ G T +HLAA+NGH +V++ + S A
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA 98
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
G T LH+AA G + V+ LLS +DP T S G TPL LA
Sbjct: 99 KDSDGKTPLHLAAENGHKEVVKLLLSQ-----GADPNTSDS--------DGRTPLDLARE 145
Query: 543 SGNENVVRLLLNSAG 557
GNE VV+LL G
Sbjct: 146 HGNEEVVKLLEKQGG 160
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATT 382
AAE G K LL+ GA ++A+D G+ P+H+AA+N EV ++ L A P+ A
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN---AKD 67
Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
DG T H+AA G V++ L+ G TPL LAAE GH VV++L+
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLL---SQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLE 471
GA + G T + LA ++G+ +V++
Sbjct: 125 QGADPNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPS 376
+TPLHLAAE G +V KLLL GA +A D G+ P+H+AA+N EV ++ L A P+
Sbjct: 38 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 97
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 436
A DG T H+AA G V++ L+ G + TPL LA E G+ V
Sbjct: 98 ---AKDSDGKTPLHLAAENGHKEVVKLLL---SQGADPNTSDSDGRTPLDLAREHGNEEV 151
Query: 437 VRVLVKAGA 445
V++L K G
Sbjct: 152 VKLLEKQGG 160
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 24/174 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
L+ A G+ + V +L N A V+ D +G++ LHLAAE+G+ K + ++S
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGH------KEVVKLLLSQGA 61
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
P+ +G +TPLHLAAE G +V KLLL GA +A D G+
Sbjct: 62 DPNAKDSDG-----------------KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGK 104
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406
P+H+AA+N EV ++ L T+ + DG T +A G+ V++ L K
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGADPNTSDS-DGRTPLDLAREHGNEEVVKLLEK 157
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LL GA PN DG+TP+H AA+ G+ ++LLL G DP K+ G+TPLHLA+ N
Sbjct: 55 LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG 114
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE 167
EVV LL+ + N+ + DG + L A + E++ + K+
Sbjct: 115 HKEVVKLLLSQGAD---------PNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 5/154 (3%)
Query: 351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 410
G++ I A N V + + V A+ DG T H+AA G V++ L+
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENG--ADVNASDSDGKTPLHLAAENGHKEVVKLLL---SQ 59
Query: 411 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 470
G TPL LAAE GH VV++L+ GA ++ G T +HLAA+NGH +V+
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV 119
Query: 471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVR 504
+ + S A S G T L +A G + V+
Sbjct: 120 KLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 68/126 (53%), Gaps = 13/126 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AAE G+ + V+ L++ GA + G T +HLAA+NGH +V++ + S A G
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V+ LLS +DP S G TPLHLAA +G++
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQ-----GADPNAKDS--------DGKTPLHLAAENGHKE 117
Query: 548 VVRLLL 553
VV+LLL
Sbjct: 118 VVKLLL 123
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 30/186 (16%)
Query: 160 LIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
LI ++ VK LLE GADV+ + + +T H A G+ +V+ +L Q +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGHKEVVKLLLSQGADP--- 63
Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
N + S G TPL +A GH E+V +L+ A + D +G++ LHLAAE+G+
Sbjct: 64 ---NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGH----- 115
Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 339
K + ++S P+ +G +TPL LA E G +V KLL
Sbjct: 116 -KEVVKLLLSQGADPNTSDSDG-----------------RTPLDLAREHGNEEVVKLLEK 157
Query: 340 LGASID 345
G ++
Sbjct: 158 QGGWLE 163
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ GN ++ LLE+G D + G+TPLHLA+ N EVV LL+ +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-------- 62
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
N+ + DG + LH A + E+ VKLLL GAD + + + +T H
Sbjct: 63 -PNAKDSDGKTPLHLAAENGHKEV-----------VKLLLSQGADPNAKD-SDGKTPLHL 109
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
A G+ +V+ +L Q + N S G TPL +A G+ E+V +
Sbjct: 110 AAENGHKEVVKLLLSQGADP------NTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
AA+NG+ ++++ + A S G T LH+AA G + V+ LLS +DP
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ-----GADPNA 65
Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
S G TPLHLAA +G++ VV+LLL S G +A+ +
Sbjct: 66 KDS--------DGKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSD 102
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 10/92 (10%)
Query: 11 ETPLHIAARVKDGDRCAL-MLLKSGAGPNLTNIAARV------KDGDRCAL-MLLKSGAG 62
+TPLH+AA ++G + + +LL GA PN + + ++G + + +LL GA
Sbjct: 71 KTPLHLAA--ENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGG 94
PN + DG+TP+ A ++GN ++LL + GG
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 85/157 (54%), Gaps = 18/157 (11%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++ATD+ G P+H+AA N E+ ++ L+ + + V A+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDLT 79
Query: 385 GNTCAHIAAMQGSVGVIEELMK-------FDRSGVISARNRVTEATPLQLAAEGGHANVV 437
G T H+AA G + ++E L+K +D G TPL LAA+ GH +V
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDG----------HTPLHLAAKYGHLEIV 129
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
VL+K GA ++K G TA ++ NG+ + E ++
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N T +DG TP+H AA G+L +++LL++G D +
Sbjct: 21 AARAGQDDEVRI-LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+ E+V++L++ + VN+ + DG + LH A + E+
Sbjct: 80 GITPLHLAAATGHLEIVEVLLKHGAD---------VNAYDNDGHTPLHLAAKYGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKHGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 85/172 (49%), Gaps = 24/172 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D +G + LHLAA +G+L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ NG A ++ L TPLHLAA G L++ ++LL GA ++A D+ G
Sbjct: 65 ---VLLKNG-------ADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGH 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
P+H+AA+ E+ ++ L+ H + V A K G T I+ G+ + E L
Sbjct: 115 TPLHLAAKYGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V AT DG T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
+G + +T TPL LAA GH +V VL+K GA + G T +HLAA+ GH +
Sbjct: 69 -NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLE 127
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA + G+T +HLAA NGH +++E + + A S G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
+T LH+AA G + V LL H D G TPLHLAA G+
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYD-------------NDGHTPLHLAAKYGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 63/106 (59%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ T + T H A G+ +++ +L+ +G ++ N G T
Sbjct: 30 VRILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLK--NGADV----NASDLTGIT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A GH+E+V +L + A V+ +D +G + LHLAA++G+L++
Sbjct: 83 PLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEI 128
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 10/119 (8%)
Query: 12 TPLHIAARVKDGD-RCALMLLKSGAGPNLTNIA-------ARVKDGDRCALMLLKSGAGP 63
TPLH+AA +G +LLK+GA N +++ A +LLK GA
Sbjct: 49 TPLHLAA--SNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV 106
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N +DG TP+H AAKYG+L +++LL+ G D ++K G+T ++ N ++ ++L
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 18/136 (13%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
VN+ + DG + LH A E+ V++LL+ GADV+ + T H
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEI-----------VEVLLKNGADVN-ASDLTGITPLHLA 87
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
A G+ +++ +L+ G ++ N + G TPL +A GH+E+V +L + A V+
Sbjct: 88 AATGHLEIVEVLLKH--GADV----NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 258 FDQEGRSALHLAAEHG 273
D+ G++A ++ ++G
Sbjct: 142 QDKFGKTAFDISIDNG 157
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 85/171 (49%), Gaps = 29/171 (16%)
Query: 45 RVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGE 104
RVKD LL++GA PN + DG+TP+H AA+ G+ ++LLL G DP K+ G
Sbjct: 19 RVKD-------LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR 71
Query: 105 TPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT 164
TPLH A+ N E+V LL+ + N+ + DG + LHYA + E+
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGAD---------PNAKDSDGRTPLHYAAENGHKEI---- 118
Query: 165 SKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSG 215
VKLLL GAD + + + T GN +++ +LE+ G
Sbjct: 119 -------VKLLLSKGADPN-TSDSDGRTPLDLAREHGNEEIVK-LLEKQGG 160
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL AAE GH +V++L+ GA ++ G T +H AA+NGH ++++ + S A
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA 98
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
G T LH AA G + V+ LLS +DP T S G TPL LA
Sbjct: 99 KDSDGRTPLHYAAENGHKEIVKLLLSK-----GADPNTSDS--------DGRTPLDLARE 145
Query: 543 SGNENVVRLLLNSAG 557
GNE +V+LL G
Sbjct: 146 HGNEEIVKLLEKQGG 160
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPS 376
+TPLH AAE G ++ KLLL GA +A D G+ P+H AA+N E+ ++ L A P+
Sbjct: 38 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 436
A DG T H AA G +++ L+ G + TPL LA E G+ +
Sbjct: 98 ---AKDSDGRTPLHYAAENGHKEIVKLLLS---KGADPNTSDSDGRTPLDLAREHGNEEI 151
Query: 437 VRVLVKAGA 445
V++L K G
Sbjct: 152 VKLLEKQGG 160
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATT 382
AAE G K LL+ GA +A+D G+ P+H AA+N E+ ++ L A P+ A
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN---AKD 67
Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
DG T H AA G +++ L+ G TPL AAE GH +V++L+
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLS---KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLE 471
GA + G T + LA ++G+ ++++
Sbjct: 125 KGADPNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ GN ++ LLE+G DP + G TPLH A+ N E+V LL+ +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-------- 62
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
N+ + DG + LHYA + E+ VKLLL GAD + + + T HY
Sbjct: 63 -PNAKDSDGRTPLHYAAENGHKEI-----------VKLLLSKGADPNAKD-SDGRTPLHY 109
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
A G+ +++ +L + + N S G TPL +A G+ E+V +
Sbjct: 110 AAENGHKEIVKLLLSKGADP------NTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AAE G+ + V+ L++ GA + G T +H AA+NGH ++++ + S A G
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH AA G + V+ LLS +DP S G TPLH AA +G++
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSK-----GADPNAKDS--------DGRTPLHYAAENGHKE 117
Query: 548 VVRLLL 553
+V+LLL
Sbjct: 118 IVKLLL 123
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 30/186 (16%)
Query: 160 LIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
LI ++ VK LLE GAD + + + T HY A G+ +++ +L + +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPN-ASDSDGRTPLHYAAENGHKEIVKLLLSKGADP--- 63
Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
N + S G TPL A GH E+V +L+ A + D +GR+ LH AAE+G+
Sbjct: 64 ---NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGH----- 115
Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 339
K + ++S P+ +G +TPL LA E G ++ KLL
Sbjct: 116 -KEIVKLLLSKGADPNTSDSDG-----------------RTPLDLAREHGNEEIVKLLEK 157
Query: 340 LGASID 345
G ++
Sbjct: 158 QGGWLE 163
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 7/155 (4%)
Query: 351 GQKPIHVAAQNNFPEVAQIFLR-AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 409
G++ I A N V + A P+ A+ DG T H AA G +++ L+
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLS--- 58
Query: 410 SGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV 469
G TPL AAE GH +V++L+ GA ++ G T +H AA+NGH ++
Sbjct: 59 KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEI 118
Query: 470 LEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVR 504
++ + S A S G T L +A G + V+
Sbjct: 119 VKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
AA+NG+ ++++ + A S G T LH AA G + V+ LLS +DP
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK-----GADPNA 65
Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
S G TPLH AA +G++ +V+LLL S G +A+ +
Sbjct: 66 KDS--------DGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSD 102
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++ATD G P+H+AA+ E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK-YGADVNAWDNY 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H+AA G + ++E L+K ++A++ TPL LAA GH +V VL+K G
Sbjct: 80 GATPLHLAADNGHLEIVEVLLK--HGADVNAKD-YEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
A ++K G TA ++ NG+ + E ++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
TPLHLAA+ G L++ ++LL GA ++A D+ G P+H+AA N E+ ++ L+ H + V
Sbjct: 48 HTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK-HGADV 106
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
A +G T H+AA G + ++E L+K+ ++A+++ + T ++ + G+ ++
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD--VNAQDKFGK-TAFDISIDNGNEDLAE 163
Query: 439 VLVK 442
+L K
Sbjct: 164 ILQK 167
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 5/153 (3%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V AT G+T H+AA G + ++E L+K+
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
++A + ATPL LAA+ GH +V VL+K GA ++ GFT +HLAA +GH +
Sbjct: 71 AD--VNAWDNYG-ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLE 127
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
+N +G TPL +A GH+E+V +L A V+ +D G + LHLAA++G+L++
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVE-- 97
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
++ H A ++ TPLHLAA G L++ ++LL G
Sbjct: 98 ---------------------VLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
A ++A D G+ ++ N ++A+I
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKL 486
AA G + VR+L+ GA + G T +HLAA+ GH +++E + A +N +
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-Y 79
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G T LH+AA G + V LL H D G TPLHLAAY G+
Sbjct: 80 GATPLHLAADNGHLEIVEVLLKHGADVNAKDY-------------EGFTPLHLAAYDGHL 126
Query: 547 NVVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 127 EIVEVLL-KYGADVNAQDK 144
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK GA N + G TP+H AA G+L +++LL+ G D K+ G TPLHLA+ +
Sbjct: 65 VLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDG 124
Query: 115 KAEVVDLLIQFVQNI-SQEKV 134
E+V++L+++ ++ +Q+K
Sbjct: 125 HLEIVEVLLKYGADVNAQDKF 145
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 9 LRETPLHIAARVKDGDRCALMLLKSGAGPN-LTNIAAR----VKDGDRCALM--LLKSGA 61
L TPLH+AA+ + +LLK GA N N A D ++ LLK GA
Sbjct: 46 LGHTPLHLAAKTGHLEIVE-VLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 62 GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
N +G TP+H AA G+L +++LL+ G D ++K G+T ++ N ++ ++
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 122 L 122
L
Sbjct: 165 L 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++ATD G P+H+AA E+ ++ L+ H + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIX 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G+T H+AA+ G + ++E L+K ++A + + TPL LAA GH +V VL+K G
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLK--HGADVNAVDTWGD-TPLHLAAIMGHLEIVEVLLKHG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
A ++K G TA ++ NG+ + E ++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA +G+L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ H A ++ + + TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 65 ----------VLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
P+H+AA E+ ++ L+ H + V A K G T I+ G+ + E L K +
Sbjct: 115 TPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N T G TP+H AA YG+L +++LL+ G D +
Sbjct: 21 AARAGQDDEVRI-LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIX 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+ E+V++L++ + VN+V+ G + LH A + E+
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGAD---------VNAVDTWGDTPLHLAAIMGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKHGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
+N + G TPL +A GH+E+V +L + A V+ D G + LHLAA G+L++
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVE-- 97
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
++ H A ++ + TPLHLAA G L++ ++LL G
Sbjct: 98 ---------------------VLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
A ++A D G+ ++ N ++A+I
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V AT G T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH- 69
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
G + +TPL LAA GH +V VL+K GA + G T +HLAA GH +
Sbjct: 70 --GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLE 127
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA + +G T +HLAA GH +++E + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V LL H D G TPLHLAA G+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDT-------------WGDTPLHLAAIMGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIA-------ARVKDGDRCALMLLKSGAGPN 64
TPLH+AA + +LLK GA N +I A + +LLK GA N
Sbjct: 49 TPLHLAATYGHLEIVE-VLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
G TP+H AA G+L +++LL+ G D ++K G+T ++ N ++ ++L
Sbjct: 108 AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L AA GQ D VR L+++ +D S
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILMANGADVNATDA-------------S 46
Query: 533 GMTPLHLAAYSGNENVVRLLL 553
G+TPLHLAA G+ +V +LL
Sbjct: 47 GLTPLHLAATYGHLEIVEVLL 67
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 4/150 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++ATD G P+H+AA E+ ++ L+ H + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLK-HGADVNAIDIM 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G+T H+AA+ G + ++E L+K ++A + + TPL LAA GH +V VL+K G
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLK--HGADVNAVDTWGD-TPLHLAAIMGHLEIVEVLLKHG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
A ++K G TA ++ NG+ + E ++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA +G+L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ H A ++ + + TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 65 ----------VLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGD 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
P+H+AA E+ ++ L+ H + V A K G T I+ G+ + E L K +
Sbjct: 115 TPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N T G TP+H AA YG+L +++LL+ G D + +
Sbjct: 21 AARAGQDDEVRI-LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+ E+V++L++ + VN+V+ G + LH A + E+
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLKHGAD---------VNAVDTWGDTPLHLAAIMGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKHGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
+N + G TPL +A GH+E+V +L + A V+ D G + LHLAA G+L++
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVE-- 97
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
++ H A ++ + TPLHLAA G L++ ++LL G
Sbjct: 98 ---------------------VLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
A ++A D G+ ++ N ++A+I
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V AT G T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKH- 69
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
G + +TPL LAA GH +V VL+K GA + G T +HLAA GH +
Sbjct: 70 --GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLE 127
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 64/138 (46%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA + +G T +HLAA GH +++E + A +G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V LL H D G TPLHLAA G+
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDT-------------WGDTPLHLAAIMGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIA-------ARVKDGDRCALMLLKSGAGPN 64
TPLH+AA + +LLK GA N +I A + +LLK GA N
Sbjct: 49 TPLHLAATYGHLEIVE-VLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
G TP+H AA G+L +++LL+ G D ++K G+T ++ N ++ ++L
Sbjct: 108 AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L AA GQ D VR L+++ +D S
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILMANGADVNATDA-------------S 46
Query: 533 GMTPLHLAAYSGNENVVRLLL 553
G+TPLHLAA G+ +V +LL
Sbjct: 47 GLTPLHLAATYGHLEIVEVLL 67
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 18/157 (11%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++ATDD G P+H+AA N E+ ++ L+ + + V A+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK-NGADVNASDSA 71
Query: 385 GNTCAHIAAMQGSVGVIEELMK-------FDRSGVISARNRVTEATPLQLAAEGGHANVV 437
G T H+AA G + ++E L+K +DR+G TPL LAA G +V
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGW----------TPLHLAALSGQLEIV 121
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
VL+K GA ++ G TA ++ G + E ++
Sbjct: 122 EVLLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 5/153 (3%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + AA EV L A+ + V AT +G T H+AA G + ++E L+K
Sbjct: 5 DLGKKLLEAAAAGQDDEVR--ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLK-- 60
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
+G + TPL LAA GH +V VL+K GA ++ G+T +HLAA +G +
Sbjct: 61 -NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLE 119
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
++E + A LG+TA ++ GQ D
Sbjct: 120 IVEVLLKHGADVNAQDALGLTAFDISINQGQED 152
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 66/136 (48%), Gaps = 14/136 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA + G T +HLAA NG +++E + + A S G
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
+T LH+AAY G + V LL H D +G TPLHLAA SG
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKHGADVNAYD-------------RAGWTPLHLAALSGQLE 119
Query: 548 VVRLLLNSAGVQVDAQ 563
+V +LL G V+AQ
Sbjct: 120 IVEVLLKH-GADVNAQ 134
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 57/87 (65%), Gaps = 1/87 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHLAA GQL++ ++LL GA ++A+D G P+H+AA + E+ ++ L+ H + V
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK-HGADVN 99
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMK 406
A + G T H+AA+ G + ++E L+K
Sbjct: 100 AYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 21/151 (13%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+L+ +GA N T D+G TP+H AA G L +++LL++G D + G TPLHLA+ +
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDG 83
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
E+V++L++ + VN+ + G + LH A + E+ V++
Sbjct: 84 HLEIVEVLLKHGAD---------VNAYDRAGWTPLHLAALSGQLEI-----------VEV 123
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
LL+ GADV+ Q TAF G D+
Sbjct: 124 LLKHGADVNAQDALGL-TAFDISINQGQEDL 153
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
+N G TPL +A G +E+V +L N A V+ D G + LHLAA G+L++
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVE-- 89
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
++ H A ++ TPLHLAA +GQL++ ++LL G
Sbjct: 90 ---------------------VLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
A ++A D G ++ ++A+I
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ T N T H A G +++ +L+ +G ++ N S G T
Sbjct: 22 VRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLK--NGADV----NASDSAGIT 74
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A GH+E+V +L + A V+ +D+ G + LHLAA G L++
Sbjct: 75 PLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEI 120
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 12 TPLHIAARVKDGD-RCALMLLKSGAGPNLTNIAA------RVKDGD-RCALMLLKSGAGP 63
TPLH+AA +G +LLK+GA N ++ A DG +LLK GA
Sbjct: 41 TPLHLAA--ANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N G TP+H AA G L +++LL+ G D ++ +G T ++ + ++ ++L
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA +A D G+ P+H+AA E+ ++ LR + + V A +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGADVNAVDTN 67
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H+AA G + ++E L+K+ ++A++ T TPL LAA GH +V VL+K G
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGAD--VNAKD-ATGITPLYLAAYWGHLEIVEVLLKHG 124
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
A ++K G TA ++ G+ + E ++
Sbjct: 125 ADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 24/160 (15%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A + +D GR+ LH+AA G+L++
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVE------------- 52
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ NG A ++ + TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 53 ---VLLRNG-------ADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI 102
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 392
P+++AA E+ ++ L+ H + V A K G T I+
Sbjct: 103 TPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 141
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N G+TP+H AA G+L +++LL +G D +
Sbjct: 9 AARAGQDDEVRI-LMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN 67
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+ E+V++L+++ + VN+ + G + L+ A E+
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGAD---------VNAKDATGITPLYLAAYWGHLEI-- 116
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 117 ---------VEVLLKHGADVNAQDKFG-KTAFDISIDIGNEDL 149
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + A G T H+AA G + ++E L+
Sbjct: 1 DLGKKLLEAARAGQDDEVR--ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLL--- 55
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
R+G TPL LAA GH +V VL+K GA ++ TG T ++LAA GH +
Sbjct: 56 RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLE 115
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
++E + A K G TA ++ G D
Sbjct: 116 IVEVLLKHGADVNAQDKFGKTAFDISIDIGNED 148
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+TPLH+AA G L++ ++LL GA ++A D G P+H+AA E+ ++ L+ + + V
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK-YGADV 94
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMK 406
A G T ++AA G + ++E L+K
Sbjct: 95 NAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM-RSSKALNVYSKKL 486
AA G + VR+L+ GA + G T +H+AA GH +++E + R+ +N
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN- 67
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G T LH+AA G + V LL + D +G+TPL+LAAY G+
Sbjct: 68 GTTPLHLAASLGHLEIVEVLLKYGADVNAKDA-------------TGITPLYLAAYWGHL 114
Query: 547 NVVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 115 EIVEVLLKH-GADVNAQDK 132
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%)
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
N G TPL +A GH+E+V +L N A V+ D G + LHLAA G+L++
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVE--- 85
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
++ + A ++ TPL+LAA G L++ ++LL GA
Sbjct: 86 --------------------VLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGA 125
Query: 343 SIDATDDQGQKPIHVAAQNNFPEVAQIF 370
++A D G+ ++ ++A+I
Sbjct: 126 DVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 85/197 (43%), Gaps = 60/197 (30%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ G +++L+ +G D + G TPLH+A+ E+V++L++ +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-------- 60
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VN+V+ +G + LH A + E+ V++LL+ GADV
Sbjct: 61 -VNAVDTNGTTPLHLAASLGHLEI-----------VEVLLKYGADV-------------- 94
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
N + + G TPL +A GH+E+V +L + A V+
Sbjct: 95 --------------------------NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
Query: 257 VFDQEGRSALHLAAEHG 273
D+ G++A ++ + G
Sbjct: 129 AQDKFGKTAFDISIDIG 145
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GAD + T H A G+ +++ +L +G ++ N + G T
Sbjct: 18 VRILMANGADANAYDHYG-RTPLHMAAAVGHLEIVEVLLR--NGADV----NAVDTNGTT 70
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A + GH+E+V +L A V+ D G + L+LAA G+L++
Sbjct: 71 PLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEI 116
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 29/171 (16%)
Query: 45 RVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGE 104
RVKD L+++GA N + DG+TP+H AAK G+ ++LL+ G D K+ G
Sbjct: 19 RVKD-------LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 71
Query: 105 TPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT 164
TPLH A++ E+V LLI + VN+ + DG + LHYA + E+
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGAD---------VNAKDSDGRTPLHYAAKEGHKEI---- 118
Query: 165 SKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSG 215
VKLL+ GADV+ + + T GN +++ +LE+ G
Sbjct: 119 -------VKLLISKGADVN-TSDSDGRTPLDLAREHGNEEIVK-LLEKQGG 160
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AAE G K L++ GA ++A+D G+ P+H AA+ E+ ++ + + + V A D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSD 69
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H AA +G +++ L+ + ++A++ TPL AA+ GH +V++L+ G
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLIS--KGADVNAKDSDGR-TPLHYAAKEGHKEIVKLLISKG 126
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A + G T + LA ++G+ ++++
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 24/164 (14%)
Query: 116 AEVVDLLIQFVQNISQEKVLEY------VNSVNEDGASALHYACQVTKAELIPITSKEDQ 169
+E+ LI+ +N ++++V + VN+ + DG + LHYA + E+
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEI--------- 52
Query: 170 KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIG 229
VKLL+ GADV+ + + T HY A G+ +++ ++ + G ++ N + S G
Sbjct: 53 --VKLLISKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLISK--GADV----NAKDSDG 103
Query: 230 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
TPL A GH E+V +++ A V+ D +GR+ L LA EHG
Sbjct: 104 RTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+TPLH AA+ G ++ KLL+ GA ++A D G+ P+H AA+ E+ ++ + + + V
Sbjct: 38 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI-SKGADV 96
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
A DG T H AA +G +++ L+ G + TPL LA E G+ +V+
Sbjct: 97 NAKDSDGRTPLHYAAKEGHKEIVKLLIS---KGADVNTSDSDGRTPLDLAREHGNEEIVK 153
Query: 439 VLVKAGA 445
+L K G
Sbjct: 154 LLEKQGG 160
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL AA+ GH +V++L+ GA ++ G T +H AA+ GH ++++ + SK +V
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK-LLISKGADVN 97
Query: 483 SKKL-GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+K G T LH AA G + V+ L+S SD G TPL LA
Sbjct: 98 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDS-------------DGRTPLDLAR 144
Query: 542 YSGNENVVRLLLNSAG 557
GNE +V+LL G
Sbjct: 145 EHGNEEIVKLLEKQGG 160
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ GN ++ L+E+G D + G TPLH A++ E+V LLI +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD-------- 62
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VN+ + DG + LHYA + E+ VKLL+ GADV+ + + T HY
Sbjct: 63 -VNAKDSDGRTPLHYAAKEGHKEI-----------VKLLISKGADVNAKD-SDGRTPLHY 109
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
A G+ +++ ++ + G ++ N S G TPL +A G+ E+V +
Sbjct: 110 AAKEGHKEIVKLLISK--GADV----NTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 30/186 (16%)
Query: 160 LIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
LI ++ VK L+E GADV+ + + T HY A G+ +++ ++ + G ++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHYAAKEGHKEIVKLLISK--GADV- 63
Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
N + S G TPL A GH E+V +++ A V+ D +GR+ LH AA+ G+ ++
Sbjct: 64 ---NAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI-- 118
Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 339
+L +I G A ++ +TPL LA E G ++ KLL
Sbjct: 119 ----------VKL----LISKG-------ADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 340 LGASID 345
G ++
Sbjct: 158 QGGWLE 163
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 410
G++ I A N V + + + V A+ DG T H AA +G +++ L+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLI--ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLIS--KG 60
Query: 411 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 470
++A++ TPL AA+ GH +V++L+ GA ++ G T +H AA+ GH +++
Sbjct: 61 ADVNAKDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV 119
Query: 471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVR 504
+ + S A S G T L +A G + V+
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKL- 486
AAE G+ + V+ L++ GA + G T +H AA+ GH ++++ + SK +V +K
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVK-LLISKGADVNAKDSD 69
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G T LH AA G + V+ L+S GA + G TPLH AA G++
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLIS-----------KGADVNAK--DSDGRTPLHYAAKEGHK 116
Query: 547 NVVRLLLNSAGVQVD 561
+V+LL+ S G V+
Sbjct: 117 EIVKLLI-SKGADVN 130
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
AA+NG+ ++++ + A S G T LH AA G + V+ L+S
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLIS-----------K 59
Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
GA + G TPLH AA G++ +V+LL+ S G V+A+ +
Sbjct: 60 GADVNAK--DSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSD 102
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A+D G P+H+AA E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK-NGADVNADDSL 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H+AA +G + V+E L+K +G N TPL LAA GH +V VL+K G
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLK---NGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
A ++K G TA ++ NG+ + E ++
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 23/172 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N + G TP+H AA +G+L +++LL++G D + +
Sbjct: 21 AARAGQDDEVRI-LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+ EVV++L++ + VN+ + +G + LH A + E+
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLKNGAD---------VNANDHNGFTPLHLAANIGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMS 214
V++LL+ GADV+ Q K +TAF GN D L +L++++
Sbjct: 129 ---------VEVLLKHGADVNAQDKFG-KTAFDISIDNGNED-LAEILQKLN 169
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V A+ G T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
+G + TPL LAA+ GH VV VL+K GA + GFT +HLAA GH +
Sbjct: 69 -NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA G+L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ NG V+ D L + TPLHLAA+ G L+V ++LL GA ++A D G
Sbjct: 65 ---VLLKNGADVN----ADDSLGV---TPLHLAADRGHLEVVEVLLKNGADVNANDHNGF 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
P+H+AA E+ ++ L+ H + V A K G T I+ G+ + E L K +
Sbjct: 115 TPLHLAANIGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHLAA G L++ ++LL GA ++A D G P+H+AA EV ++ L+ + + V
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
A +G T H+AA G + ++E L+K ++A+++ + T ++ + G+ ++ +
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLK--HGADVNAQDKFGK-TAFDISIDNGNEDLAEI 164
Query: 440 LVK 442
L K
Sbjct: 165 LQK 167
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA + G+T +HLAA GH +++E + + A LG
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
VT LH+AA G + V LL + +D +G TPLHLAA G+
Sbjct: 81 VTPLHLAADRGHLEVVEVLLKNGADVNAND-------------HNGFTPLHLAANIGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ + T H A G+ +++ +L+ +G ++ N S+G T
Sbjct: 30 VRILMANGADVN-ASDHVGWTPLHLAAYFGHLEIVEVLLK--NGADV----NADDSLGVT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A +RGH+E+V +L N A V+ D G + LHLAA G+L++
Sbjct: 83 PLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEI 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 84/197 (42%), Gaps = 60/197 (30%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ G +++L+ +G D + +G TPLHLA+ E+V++L++ +++ + L
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL- 79
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
G + LH A E+ V++LL+ GADV
Sbjct: 80 --------GVTPLHLAADRGHLEV-----------VEVLLKNGADV-------------- 106
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
N G+TPL +A N GH+E+V +L + A V+
Sbjct: 107 --------------------------NANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 257 VFDQEGRSALHLAAEHG 273
D+ G++A ++ ++G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTN---IAARVKDGDRCAL----MLLKSGAGPN 64
TPLH+AA + +LLK+GA N + + DR L +LLK+GA N
Sbjct: 49 TPLHLAAYFGHLEIVE-VLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
+G TP+H AA G+L +++LL+ G D ++K G+T ++ N ++ ++L
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
+N +GWTPL +A GH+E+V +L N A V+ +D G + LHLAA G+L++
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVE-- 97
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
++ NG A ++ TPLHLAA G L++ ++LL G
Sbjct: 98 --------------VLLKNG-------ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
A ++A D G+ ++ N ++A+I
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AG+ ++L+ GA ++A D G P+H+AA E+ ++ L+ + + V A
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK-NGADVNAYDTL 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G+T H+AA G + ++E L+K ++A++ TPL LAA GH +V VL+K G
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLK--NGADVNAKDD-NGITPLHLAANRGHLEIVEVLLKYG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISINNGNEDLAE 163
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKL 486
AA G + VR+L+ GA + G+T +HLAA GH +++E + + A +N Y L
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT-L 79
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G T LH+AA+FG + V LL + D ++G+TPLHLAA G+
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKD-------------DNGITPLHLAANRGHL 126
Query: 547 NVVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 127 EIVEVLL-KYGADVNAQDK 144
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 24/176 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA G+L++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ NG A ++ TPLHLAA G L++ ++LL GA ++A DD G
Sbjct: 65 ---VLLKNG-------ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGI 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
P+H+AA E+ ++ L+ + + V A K G T I+ G+ + E L K +
Sbjct: 115 TPLHLAANRGHLEIVEVLLK-YGADVNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 23/172 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N G TP+H AA +G+L +++LL++G D + +
Sbjct: 21 AARAGRDDEVRI-LMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+ E+V++L++ + VN+ +++G + LH A E+
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGAD---------VNAKDDNGITPLHLAANRGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMS 214
V++LL+ GADV+ Q K +TAF GN D L +L++++
Sbjct: 129 ---------VEVLLKYGADVNAQDKFG-KTAFDISINNGNED-LAEILQKLN 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V A G T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGRDDEVR--ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
++A + + +TPL LAA GH +V VL+K GA ++ G T +HLAA GH +
Sbjct: 69 NGADVNAYDTLG-STPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLE 127
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
++E + A K G TA ++ G D
Sbjct: 128 IVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 60/197 (30%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ G +++L+ +G D + +G TPLHLA+ E+V++L++ +
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD-------- 72
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VN+ + G++ LH A E+ V++LL+ GADV
Sbjct: 73 -VNAYDTLGSTPLHLAAHFGHLEI-----------VEVLLKNGADV-------------- 106
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
N + G TPL +A NRGH+E+V +L A V+
Sbjct: 107 --------------------------NAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 257 VFDQEGRSALHLAAEHG 273
D+ G++A ++ +G
Sbjct: 141 AQDKFGKTAFDISINNG 157
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ T H A G+ +++ +L+ +G ++ N ++G T
Sbjct: 30 VRILMANGADVNAADVVGW-TPLHLAAYWGHLEIVEVLLK--NGADV----NAYDTLGST 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A + GH+E+V +L N A V+ D G + LHLAA G+L++
Sbjct: 83 PLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEI 128
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L AA G+ D VR L+++ +D
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGRDDEVRILMANGADVNAADV-------------V 46
Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
G TPLHLAAY G+ +V +LL + G V+A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKN-GADVNA 75
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AG+ ++L+ GA ++A D G P+H+AA N E+ ++ L+ + + V A
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVDHA 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T +AA+ G + ++E L+K +G N + TPL LAA GH +V VL+K G
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLK---NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
+N + + GWTPL +A GH+E+V +L N A V+ D G + L LAA G+L++
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVE-- 97
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
++ NG A ++ + TPLHLAA G L++ ++LL G
Sbjct: 98 --------------VLLKNG-------ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
A ++A D G+ ++ N ++A+I
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA E+ +G+T +HLAA NGH +++E + + A G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
+T L +AA FG + V LL + +D G TPLHLAA G+
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDM-------------EGHTPLHLAAMFGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL + G V+AQ +
Sbjct: 128 IVEVLLKN-GADVNAQDK 144
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA +G+L++
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVH--DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 350
++ NG V+ DHA + TPL LAA G L++ ++LL GA ++A D +
Sbjct: 65 ---VLLKNGADVNAVDHAGM---------TPLRLAALFGHLEIVEVLLKNGADVNANDME 112
Query: 351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
G P+H+AA E+ ++ L+ + + V A K G T I+ G+ + E L K +
Sbjct: 113 GHTPLHLAAMFGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 76/155 (49%), Gaps = 9/155 (5%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V A G T H+AA G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGRDDEVR--ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEA--TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH 466
+G + N V A TPL+LAA GH +V VL+K GA + G T +HLAA GH
Sbjct: 69 -NG--ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH 125
Query: 467 NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
+++E + + A K G TA ++ G D
Sbjct: 126 LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N G TP+H AA G+L +++LL++G D +
Sbjct: 21 AARAGRDDEVRI-LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPL LA+ E+V++L++ + VN+ + +G + LH A E+
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGAD---------VNANDMEGHTPLHLAAMFGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKNGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIA-------ARVKDGDRCALMLLKSGAGPN 64
TPLH+AA +LLK+GA N + A A + +LLK+GA N
Sbjct: 49 TPLHLAA-FNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
+G TP+H AA +G+L +++LL++G D ++K G+T ++ N ++ ++L
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L AA G+ D VR L++ GA E S
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGRDDEVRILMA-----------NGADVNAE--DAS 46
Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
G TPLHLAA++G+ +V +LL + G V+A
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKN-GADVNA 75
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 14/80 (17%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G T LH+AA+ G + V LL + D +GMTPL LAA G+
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-------------HAGMTPLRLAALFGHL 93
Query: 547 NVVRLLLNSAGVQVDAQTQE 566
+V +LL + G V+A E
Sbjct: 94 EIVEVLLKN-GADVNANDME 112
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L A V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V 61
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMK 406
A K+G T H+AA G + V++ L++
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 20/112 (17%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
+G+TP+H AA+ G+L ++LLLE G D K+K G TPLHLA+RN EVV LL++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGA 180
VN+ +++G + LH A + E+ VKLLLEAGA
Sbjct: 61 ---------VNAKDKNGRTPLHLAARNGHLEV-----------VKLLLEAGA 92
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LL++GA N +G+TP+H AA+ G+L ++LLLE G D K+K G TPLHLA+RN
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Query: 115 KAEVVDLLIQ 124
EVV LL++
Sbjct: 80 HLEVVKLLLE 89
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 23/112 (20%)
Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
GR+ LHLAA +G+L+V L+ + A ++ +TP
Sbjct: 2 GRTPLHLAARNGHLEVVK-----------------------LLLEAGADVNAKDKNGRTP 38
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 373
LHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L A
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 53/86 (61%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA GH VV++L++AGA ++K G T +HLAA+NGH +V++ + + A
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 483 SKKLGVTALHVAAYFGQADTVRELLS 508
K G T LH+AA G + V+ LL
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 23/114 (20%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK--------- 52
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
L+ + A ++ +TPLHLAA G L+V KLLL+ GA
Sbjct: 53 --------------LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
+G T H+AA G + V++ L+ + ++A+++ TPL LAA GH VV++L++A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL--EAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA 57
Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLE 471
GA ++K G T +HLAA+NGH +V++
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVK 85
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 409
G+ P+H+AA+N EV ++ L A V A K+G T H+AA G + V++ L+ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL--EA 57
Query: 410 SGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
++A+++ TPL LAA GH VV++L++AGA
Sbjct: 58 GADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
N T H A G+ +V+ +LE +G ++ N + G TPL +A GH+E+V +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE--AGADV----NAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
L A V+ D+ GR+ LHLAA +G+L+V
Sbjct: 55 LEAGADVNAKDKNGRTPLHLAARNGHLEV 83
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 13/103 (12%)
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
G T +HLAA+NGH +V++ + + A K G T LH+AA G + V+ LL
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---- 56
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 555
GA + ++G TPLHLAA +G+ VV+LLL +
Sbjct: 57 -------AGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 170 KTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIG 229
+ VKLLLEAGADV+ + K N T H A G+ +V+ +LE +G ++ N + G
Sbjct: 16 EVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE--AGADV----NAKDKNG 68
Query: 230 WTPLLIACNRGHMELVNTML 249
TPL +A GH+E+V +L
Sbjct: 69 RTPLHLAARNGHLEVVKLLL 88
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 11 ETPLHIAARVKDGD-RCALMLLKSGAGPNLTNIAARV------KDGD-RCALMLLKSGAG 62
TPLH+AAR +G +LL++GA N + R ++G +LL++GA
Sbjct: 3 RTPLHLAAR--NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
N +G+TP+H AA+ G+L ++LLLE G
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565
+G TPLHLAA +G+ VV+LLL AG V+A+ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDK 33
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AAE G K L++ GA ++A+D G+ P+H AA+N EV ++ + + + V A D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSD 69
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H AA G V++ L+ + ++A++ TPL AAE GH VV++L+ G
Sbjct: 70 GRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGR-TPLHHAAENGHKEVVKLLISKG 126
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A + G T + LA ++G+ +V++
Sbjct: 127 ADVNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+TPLH AAE G +V KLL+ GA ++A D G+ P+H AA+N EV ++ + + + V
Sbjct: 38 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SKGADV 96
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
A DG T H AA G V++ L+ G + TPL LA E G+ VV+
Sbjct: 97 NAKDSDGRTPLHHAAENGHKEVVKLLIS---KGADVNTSDSDGRTPLDLAREHGNEEVVK 153
Query: 439 VLVKAGA 445
+L K G
Sbjct: 154 LLEKQGG 160
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 85/171 (49%), Gaps = 29/171 (16%)
Query: 45 RVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGE 104
RVKD L+++GA N + DG+TP+H AA+ G+ ++LL+ G D K+ G
Sbjct: 19 RVKD-------LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR 71
Query: 105 TPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT 164
TPLH A+ N EVV LLI + VN+ + DG + LH+A + E+
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGAD---------VNAKDSDGRTPLHHAAENGHKEV---- 118
Query: 165 SKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSG 215
VKLL+ GADV+ + + T GN +V+ +LE+ G
Sbjct: 119 -------VKLLISKGADVNT-SDSDGRTPLDLAREHGNEEVVK-LLEKQGG 160
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL AAE GH VV++L+ GA ++ G T +H AA+NGH +V++ + SK +V
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK-LLISKGADVN 97
Query: 483 SKKL-GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+K G T LH AA G + V+ L+S SD G TPL LA
Sbjct: 98 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS-------------DGRTPLDLAR 144
Query: 542 YSGNENVVRLLLNSAG 557
GNE VV+LL G
Sbjct: 145 EHGNEEVVKLLEKQGG 160
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 84/201 (41%), Gaps = 60/201 (29%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ GN ++ L+E+G D + G TPLH A+ N EVV LLI +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-------- 62
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VN+ + DG + LH+A + E+ VKLL+ GADV
Sbjct: 63 -VNAKDSDGRTPLHHAAENGHKEV-----------VKLLISKGADV-------------- 96
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
N + S G TPL A GH E+V +++ A V+
Sbjct: 97 --------------------------NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 130
Query: 257 VFDQEGRSALHLAAEHGYLKV 277
D +GR+ L LA EHG +V
Sbjct: 131 TSDSDGRTPLDLAREHGNEEV 151
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 76/164 (46%), Gaps = 26/164 (15%)
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
A GN D + ++E +G ++ N S G TPL A GH E+V +++ A V+
Sbjct: 11 AAENGNKDRVKDLIE--NGADV----NASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64
Query: 257 VFDQEGRSALHLAAEHGY-----LKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVI 311
D +GR+ LH AAE+G+ L +S G + R P H+ NG H V+
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG-----HKEVV 119
Query: 312 DILTLRK----------QTPLHLAAEAGQLQVCKLLLDLGASID 345
+L + +TPL LA E G +V KLL G ++
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
AA+NG+ ++++ + A S G T LH AA G + V+ L+S
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-----------K 59
Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
GA + G TPLH AA +G++ VV+LL+ S G V+A+ +
Sbjct: 60 GADVNAK--DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSD 102
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D G P+H+AA E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSL 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H+AA +G + ++E L+K +G + TPL LAA+ GH +V VL+K G
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLK---NGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A ++K G TA ++ NG+ + E
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N G TP+H AA +G+L +++LL++G D K+ +
Sbjct: 21 AARAGQDDEVRI-LMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+R E+V++L++ + VN+ + G + LH A + E+
Sbjct: 80 GVTPLHLAARRGHLEIVEVLLKNGAD---------VNASDSHGFTPLHLAAKRGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKNGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA + TG+T +HLAA GH +++E + + A LG
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
VT LH+AA G + V LL + SD G TPLHLAA G+
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGADVNASDS-------------HGFTPLHLAAKRGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL + G V+AQ +
Sbjct: 128 IVEVLLKN-GADVNAQDK 144
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHLAA G L++ ++LL GA ++A D G P+H+AA+ E+ ++ L+ + + V
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
A+ G T H+AA +G + ++E L+K ++A+++ + T ++ + G+ ++ +
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLK--NGADVNAQDKFGK-TAFDISIDNGNEDLAEI 164
Query: 440 LVK 442
L K
Sbjct: 165 LQK 167
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA G+L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ NG V+ D L + TPLHLAA G L++ ++LL GA ++A+D G
Sbjct: 65 ---VLLKNGADVN----AKDSLGV---TPLHLAARRGHLEIVEVLLKNGADVNASDSHGF 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
P+H+AA+ E+ ++ L+ + + V A K G T I+ G+ + E L K +
Sbjct: 115 TPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 413 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 472
++AR+ T TPL LAA GH +V VL+K GA ++ G T +HLAA+ GH +++E
Sbjct: 40 VNARD-FTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
+ + A S G T LH+AA G + V LL + D +
Sbjct: 99 LLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQD-------------KF 145
Query: 533 GMTPLHLAAYSGNENVVRLL 552
G T ++ +GNE++ +L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 63/106 (59%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ + T H A G+ +++ +L+ +G ++ N + S+G T
Sbjct: 30 VRILMANGADVNARDFTGW-TPLHLAAHFGHLEIVEVLLK--NGADV----NAKDSLGVT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A RGH+E+V +L N A V+ D G + LHLAA+ G+L++
Sbjct: 83 PLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEI 128
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 60/197 (30%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ G +++L+ +G D ++ G TPLHLA+ E+V++L++ +++ + L
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL- 79
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
G + LH A + E+ V++LL+ GADV
Sbjct: 80 --------GVTPLHLAARRGHLEI-----------VEVLLKNGADV-------------- 106
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
N S G+TPL +A RGH+E+V +L N A V+
Sbjct: 107 --------------------------NASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 257 VFDQEGRSALHLAAEHG 273
D+ G++A ++ ++G
Sbjct: 141 AQDKFGKTAFDISIDNG 157
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAGP 63
TPLH+AA + +LLK+GA N + +AAR + +LLK+GA
Sbjct: 49 TPLHLAAHFGHLE-IVEVLLKNGADVNAKDSLGVTPLHLAAR-RGHLEIVEVLLKNGADV 106
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N + G TP+H AAK G+L +++LL++G D ++K G+T ++ N ++ ++L
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA G+L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ H A +D + TPLHLAA G L++ ++LL GA ++A D G
Sbjct: 65 ----------VLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGM 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
P+H+AA+ + E+ ++ L+ H + V A K G T I+ G+ + E L K +
Sbjct: 115 TPLHLAAKWGYLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA + TG T +HLAA +GH +++E + A S G
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AAY+G + V LL + D GMTPLHLAA G
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDS-------------DGMTPLHLAAKWGYLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKH-GADVNAQDK 144
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N + G TP+H AA G+L +++LL+ G D +
Sbjct: 21 AARAGQDDEVRI-LMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPLHLA+ E+V++L++ + VN+++ DG + LH A + E+
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGAD---------VNAMDSDGMTPLHLAAKWGYLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKHGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479
T TPL LAA GH +V VL+K GA + G+T +HLAA GH +++E + + A
Sbjct: 46 TGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 480 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
G+T LH+AA +G + V LL H D + G T +
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQD-------------KFGKTAFDI 152
Query: 540 AAYSGNENVVRLL 552
+ +GNE++ +L
Sbjct: 153 SIDNGNEDLAEIL 165
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ T H A +G+ +++ +L+ + + S G+T
Sbjct: 30 VRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF------GYT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A GH+E+V +L N A V+ D +G + LHLAA+ GYL++
Sbjct: 83 PLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEI 128
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK+GA N DG TP+H AAK+G L +++LL+ G D ++K G+T ++ N
Sbjct: 98 VLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 158 NEDLAEIL 165
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 18/136 (13%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
VN+ + G + LH A E+ V++LL+ GADV + T H
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEI-----------VEVLLKHGADVDASDVFGY-TPLHLA 87
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
A G+ +++ +L+ +G ++ N S G TPL +A G++E+V +L + A V+
Sbjct: 88 AYWGHLEIVEVLLK--NGADV----NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 258 FDQEGRSALHLAAEHG 273
D+ G++A ++ ++G
Sbjct: 142 QDKFGKTAFDISIDNG 157
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 38/247 (15%)
Query: 234 LIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
L+ CN + EL ++L + + DQ+ R+ALH A G+ ++ ++
Sbjct: 9 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVE------FLLQ 62
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
+P ++ G+ +PLH+AA AG+ ++ K LL GA ++A +
Sbjct: 63 LGVPVNDKDDAGW-----------------SPLHIAASAGRDEIVKALLGKGAQVNAVNQ 105
Query: 350 QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
G P+H AA N E+A + L A+P A T H AA +G++ +I L+ +
Sbjct: 106 NGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 408 DRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH 466
S I + TE TPL LA + ++LV GAS ENK T + + A+ G
Sbjct: 163 KASTNI----QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV-AKGGL 217
Query: 467 NQVLEEM 473
+L+ M
Sbjct: 218 GLILKRM 224
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 34/228 (14%)
Query: 180 ADVSLQTK--QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC 237
AD SL T+ Q+ TA H+ AG+ +++ +L+ + +N + GW+PL IA
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAA 82
Query: 238 NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNI 297
+ G E+V +L A+V+ +Q G + LH AA +H + L
Sbjct: 83 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN----------RHEIAVMLL----- 127
Query: 298 IPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV 357
+ A D + T +H AA G L++ +LL AS + D +G P+H+
Sbjct: 128 --------EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 179
Query: 358 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM 405
A E A++ + S+ K+ T +A +G +G+I + M
Sbjct: 180 ACDEERVEEAKLLVSQGASIYI-ENKEEKTPLQVA--KGGLGLILKRM 224
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 31/206 (15%)
Query: 66 TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD-LLIQ 124
T D +T +H A G+ ++ LL+ G K+ G +PLH+A+ + E+V LL +
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
Q VN+VN++G + LHYA SK + +LLE GA+
Sbjct: 97 GAQ----------VNAVNQNGCTPLHYA-----------ASKNRHEIAVMLLEGGANPD- 134
Query: 185 QTKQNHE-TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
K ++E TA H A GN ++ +L + T I Q + G TPL +AC+ +E
Sbjct: 135 -AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI------QDTEGNTPLHLACDEERVE 187
Query: 244 LVNTMLNNHARVDVFDQEGRSALHLA 269
+++ A + + ++E ++ L +A
Sbjct: 188 EAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNI-------AARVKDGDRCALMLLKSGAGPN 64
+PLHIAA D LL GA N N A K+ A+MLL+ GA P+
Sbjct: 76 SPLHIAASAGR-DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
T +H AA GNL + +LL ++ G TPLHLA + E LL+
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 194
Query: 125 -----FVQNISQEKVLE 136
+++N ++ L+
Sbjct: 195 QGASIYIENKEEKTPLQ 211
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 393 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 452
A G + ++E + D+S ++ R T L A GH +V L++ G D++
Sbjct: 15 AYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 72
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
G++ +H+AA G +++++ + A + G T LH AA + + LL G
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---G 129
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
D T +H AA GN ++ +LL
Sbjct: 130 GANPDAK----------DHYEATAMHRAAAKGNLKMIHILL 160
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIA-------ARVKDGDRCALMLLKSGAGPN 64
TPLH AA K+ A+MLL+ GA P+ + A K + +LL A N
Sbjct: 109 TPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 167
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
+ +G TP+H A + +LL+ G +NK +TPL +A
Sbjct: 168 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 35/158 (22%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL+ G N D G +P+H AA G ++ LL G N+ G TPLH A+
Sbjct: 59 FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN 118
Query: 115 KAEVVDLLIQFVQNISQEK---------------------VLEYVNSVN---EDGASALH 150
+ E+ +L++ N + +L Y S N +G + LH
Sbjct: 119 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH 178
Query: 151 YACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
AC + E KLL+ GA + ++ K+
Sbjct: 179 LACDEERVE-----------EAKLLVSQGASIYIENKE 205
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 114/247 (46%), Gaps = 38/247 (15%)
Query: 234 LIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
L+ CN + EL ++L + + DQ+ R+ALH A G+ ++ ++
Sbjct: 8 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVE------FLLQ 61
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
+P ++ G+ +PLH+AA AG+ ++ K LL GA ++A +
Sbjct: 62 LGVPVNDKDDAGW-----------------SPLHIAASAGRDEIVKALLGKGAQVNAVNQ 104
Query: 350 QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
G P+H AA N E+A + L A+P A T H AA +G++ +I L+ +
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 408 DRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH 466
S I + TE TPL LA + ++LV GAS ENK T + + A+ G
Sbjct: 162 KASTNI----QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV-AKGGL 216
Query: 467 NQVLEEM 473
+L+ M
Sbjct: 217 GLILKRM 223
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 34/228 (14%)
Query: 180 ADVSLQTK--QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC 237
AD SL T+ Q+ TA H+ AG+ +++ +L+ + +N + GW+PL IA
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAA 81
Query: 238 NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNI 297
+ G E+V +L A+V+ +Q G + LH AA +H + L
Sbjct: 82 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN----------RHEIAVMLL----- 126
Query: 298 IPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV 357
+ A D + T +H AA G L++ +LL AS + D +G P+H+
Sbjct: 127 --------EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 178
Query: 358 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM 405
A E A++ + S+ K+ T +A +G +G+I + M
Sbjct: 179 ACDEERVEEAKLLVSQGASIYI-ENKEEKTPLQVA--KGGLGLILKRM 223
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 31/206 (15%)
Query: 66 TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD-LLIQ 124
T D +T +H A G+ ++ LL+ G K+ G +PLH+A+ + E+V LL +
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
Q VN+VN++G + LHYA SK + +LLE GA+
Sbjct: 96 GAQ----------VNAVNQNGCTPLHYA-----------ASKNRHEIAVMLLEGGANPD- 133
Query: 185 QTKQNHE-TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
K ++E TA H A GN ++ +L + T I Q + G TPL +AC+ +E
Sbjct: 134 -AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI------QDTEGNTPLHLACDEERVE 186
Query: 244 LVNTMLNNHARVDVFDQEGRSALHLA 269
+++ A + + ++E ++ L +A
Sbjct: 187 EAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNI-------AARVKDGDRCALMLLKSGAGPN 64
+PLHIAA D LL GA N N A K+ A+MLL+ GA P+
Sbjct: 75 SPLHIAASAGR-DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
T +H AA GNL + +LL ++ G TPLHLA + E LL+
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 193
Query: 125 -----FVQNISQEKVLE 136
+++N ++ L+
Sbjct: 194 QGASIYIENKEEKTPLQ 210
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 393 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 452
A G + ++E + D+S ++ R T L A GH +V L++ G D++
Sbjct: 14 AYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
G++ +H+AA G +++++ + A + G T LH AA + + LL G
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---G 128
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
D T +H AA GN ++ +LL
Sbjct: 129 GANPDAK----------DHYEATAMHRAAAKGNLKMIHILL 159
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNI-------AARVKDGDRCALMLLKSGAGPN 64
TPLH AA K+ A+MLL+ GA P+ + A K + +LL A N
Sbjct: 108 TPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 166
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
+ +G TP+H A + +LL+ G +NK +TPL +A
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 35/158 (22%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL+ G N D G +P+H AA G ++ LL G N+ G TPLH A+
Sbjct: 58 FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN 117
Query: 115 KAEVVDLLIQFVQNISQEK---------------------VLEYVNSVN---EDGASALH 150
+ E+ +L++ N + +L Y S N +G + LH
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH 177
Query: 151 YACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
AC + E KLL+ GA + ++ K+
Sbjct: 178 LACDEERVE-----------EAKLLVSQGASIYIENKE 204
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 22/163 (13%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N D G+TP+H AA G+L +++LL+ G D +K+
Sbjct: 21 AARAGQDDEVRI-LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G+TPLHLA+ E+V++L++ + VN+ + G + LH A E+
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKNGAD---------VNATDTYGFTPLHLAADAGHLEI-- 128
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
V++LL+ GADV+ Q K +TAF GN D+
Sbjct: 129 ---------VEVLLKYGADVNAQDKFG-KTAFDISIDNGNEDL 161
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 83/176 (47%), Gaps = 24/176 (13%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G++ LHLAA G+L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ H A ++ TPLHLAA G L++ ++LL GA ++ATD G
Sbjct: 65 ----------VLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF 114
Query: 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
P+H+AA E+ ++ L+ + + V A K G T I+ G+ + E L K +
Sbjct: 115 TPLHLAADAGHLEIVEVLLK-YGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA E+ +G T +HLAA GH +++E + A + K+G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA +G + V LL + +D G TPLHLAA +G+
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDT-------------YGFTPLHLAADAGHLE 127
Query: 548 VVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 128 IVEVLLKY-GADVNAQDK 144
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 13/130 (10%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA GH +V VL+K GA +K G T +HLAA GH +++E + + A
Sbjct: 49 TPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
+ G T LH+AA G + V LL + D + G T ++
Sbjct: 109 TDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQD-------------KFGKTAFDISID 155
Query: 543 SGNENVVRLL 552
+GNE++ +L
Sbjct: 156 NGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 7/106 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ + +T H A+ G+ +++ +L+ G ++ N +G T
Sbjct: 30 VRILMANGADVNAEDDSG-KTPLHLAAIKGHLEIVEVLLKH--GADV----NAADKMGDT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
PL +A GH+E+V +L N A V+ D G + LHLAA+ G+L++
Sbjct: 83 PLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEI 128
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 74/136 (54%), Gaps = 18/136 (13%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
VN+ ++ G + LH A K L + V++LL+ GADV+ K +T H
Sbjct: 40 VNAEDDSGKTPLHLAA--IKGHL---------EIVEVLLKHGADVNAADKMG-DTPLHLA 87
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
A+ G+ +++ +L+ +G ++ N + G+TPL +A + GH+E+V +L A V+
Sbjct: 88 ALYGHLEIVEVLLK--NGADV----NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141
Query: 258 FDQEGRSALHLAAEHG 273
D+ G++A ++ ++G
Sbjct: 142 QDKFGKTAFDISIDNG 157
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 21/132 (15%)
Query: 3 QQNSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGD------------ 50
+ +SGK TPLH+AA +K +LLK GA N A K GD
Sbjct: 43 EDDSGK---TPLHLAA-IKGHLEIVEVLLKHGADVN-----AADKMGDTPLHLAALYGHL 93
Query: 51 RCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
+LLK+GA N T G TP+H AA G+L +++LL+ G D ++K G+T ++
Sbjct: 94 EIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Query: 111 SRNCKAEVVDLL 122
N ++ ++L
Sbjct: 154 IDNGNEDLAEIL 165
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 25/164 (15%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDD-GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
AAR D +++ G TTD G +P+H AA+YG+ T ++LL G + K
Sbjct: 9 AARAGQDDEVRILM---ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 102 IGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELI 161
+ TPLH+A+ A +V++L++ +++ + +L+ +ALH+A
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM---------TALHWA--------- 107
Query: 162 PITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
T Q+ V+LL++ GADV Q+K +TAF GN D+
Sbjct: 108 --TEHNHQEVVELLIKYGADVHTQSKFC-KTAFDISIDNGNEDL 148
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 5/147 (3%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA TD G P+H+AAQ ++ LRA S A TK
Sbjct: 9 AARAGQDDEVRILMANGAPF-TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKV 66
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
T H+AA +G ++E L+K ++A++ + + T L A E H VV +L+K G
Sbjct: 67 DRTPLHMAASEGHANIVEVLLK--HGADVNAKDML-KMTALHWATEHNHQEVVELLIKYG 123
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A ++K TA ++ NG+ + E
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAE 150
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
+PL LAA+ GH + VL++AG S K T +H+AA GH ++E + A
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
L +TALH A + V L+ + +D T + F T ++
Sbjct: 96 KDMLKMTALHWATEHNHQEVVELLIKY-----GADVHTQSKFC--------KTAFDISID 142
Query: 543 SGNENVVRLL 552
+GNE++ +L
Sbjct: 143 NGNEDLAEIL 152
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 15/138 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA T + G + +HLAAQ GH E + + K+
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G A+ V LL H D MT LH A ++
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLK-------------MTALHWATEHNHQE 114
Query: 548 VVRLLLNSAGVQVDAQTQ 565
VV LL+ G V Q++
Sbjct: 115 VVELLIKY-GADVHTQSK 131
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 24/140 (17%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A D G S LHLAA++G+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTE------------- 51
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ + D +D +TPLH+AA G + ++LL GA ++A D
Sbjct: 52 ----VLLRAGVSRDARTKVD------RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM 101
Query: 353 KPIHVAAQNNFPEVAQIFLR 372
+H A ++N EV ++ ++
Sbjct: 102 TALHWATEHNHQEVVELLIK 121
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+ +T + TPL +A + GH +V +L + A V+ D +ALH A EH + +V
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV 115
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 37/235 (15%)
Query: 234 LIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
++ CN + EL +L + + DQ+ R+ALH A G+ ++ ++
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVE------FLLQ 61
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
+P ++ G+ +PLH+AA AG+ ++ K LL GA ++A +
Sbjct: 62 LGVPVNDKDDAGW-----------------SPLHIAASAGRDEIVKALLVKGAHVNAVNQ 104
Query: 350 QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
G P+H AA N E+A + L A+P A T H AA +G++ ++ L+ +
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 408 DRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
S I + TE TPL LA + + LV GAS ENK T + +A
Sbjct: 162 KASTNI----QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 34/224 (15%)
Query: 180 ADVSLQTK--QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC 237
AD SL T+ Q+ TA H+ AG+ +++ +L+ + +N + GW+PL IA
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------LGVPVNDKDDAGWSPLHIAA 81
Query: 238 NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNI 297
+ G E+V +L A V+ +Q G + LH AA +H + L
Sbjct: 82 SAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN----------RHEIAVMLL----- 126
Query: 298 IPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV 357
+ A D T +H AA G L++ +LL AS + D +G P+H+
Sbjct: 127 --------EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Query: 358 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
A E A+ FL + + K+ T +A +G +G+I
Sbjct: 179 ACDEERVEEAK-FLVTQGASIYIENKEEKTPLQVA--KGGLGLI 219
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 29/205 (14%)
Query: 66 TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD-LLIQ 124
T D +T +H A G+ ++ LL+ G K+ G +PLH+A+ + E+V LL++
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
+VN+VN++G + LHYA SK + +LLE GA+
Sbjct: 96 GA----------HVNAVNQNGCTPLHYA-----------ASKNRHEIAVMLLEGGANPDA 134
Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
+ + TA H A GN ++ +L + T I Q + G TPL +AC+ +E
Sbjct: 135 KDHYD-ATAMHRAAAKGNLKMVHILLFYKASTNI------QDTEGNTPLHLACDEERVEE 187
Query: 245 VNTMLNNHARVDVFDQEGRSALHLA 269
++ A + + ++E ++ L +A
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVA 212
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNI-------AARVKDGDRCALMLLKSGAGPN 64
+PLHIAA D LL GA N N A K+ A+MLL+ GA P+
Sbjct: 75 SPLHIAASAGR-DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
T +H AA GNL + +LL ++ G TPLHLA + E L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 125 -----FVQNISQEKVLE 136
+++N ++ L+
Sbjct: 194 QGASIYIENKEEKTPLQ 210
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 393 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 452
A G + ++E + D+S ++ R T L A GH +V L++ G D++
Sbjct: 14 AYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
G++ +H+AA G +++++ + A + G T LH AA + + LL G
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---G 128
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
D T +H AA GN +V +LL
Sbjct: 129 GANPDAK----------DHYDATAMHRAAAKGNLKMVHILL 159
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIA-------ARVKDGDRCALMLLKSGAGPN 64
TPLH AA K+ A+MLL+ GA P+ + A K + +LL A N
Sbjct: 108 TPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
+ +G TP+H A + + L+ G +NK +TPL +A
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 35/158 (22%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL+ G N D G +P+H AA G ++ LL G N+ G TPLH A+
Sbjct: 58 FLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117
Query: 115 KAEVVDLLIQFVQNISQEK---------------------VLEYVNSVN---EDGASALH 150
+ E+ +L++ N + +L Y S N +G + LH
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 151 YACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
AC + E K L+ GA + ++ K+
Sbjct: 178 LACDEERVE-----------EAKFLVTQGASIYIENKE 204
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 34/224 (15%)
Query: 180 ADVSLQTK--QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC 237
AD SL T+ Q+ TA H+ AG+ +++ +L ++ +N + GW+PL IA
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLL------QLGVPVNDKDDAGWSPLHIAA 81
Query: 238 NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNI 297
+ G E+V +L A V+ +Q G + LH AA +H + L
Sbjct: 82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN----------RHEIAVMLL----- 126
Query: 298 IPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHV 357
+ A D T +H AA G L++ +LL AS + D +G P+H+
Sbjct: 127 --------EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178
Query: 358 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
A E A+ FL + + K+ T +A +G +G+I
Sbjct: 179 ACDEERVEEAK-FLVTQGASIYIENKEEKTPLQVA--KGGLGLI 219
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 37/235 (15%)
Query: 234 LIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
++ CN + EL +L + + DQ+ R+ALH A G+ ++ ++
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVE------FLLQ 61
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
+P ++ G+ +PLH+AA AG ++ K LL GA ++A +
Sbjct: 62 LGVPVNDKDDAGW-----------------SPLHIAASAGXDEIVKALLVKGAHVNAVNQ 104
Query: 350 QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
G P+H AA N E+A + L A+P A T H AA +G++ ++ L+ +
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPD---AKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 408 DRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
S I + TE TPL LA + + LV GAS ENK T + +A
Sbjct: 162 KASTNI----QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 29/205 (14%)
Query: 66 TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD-LLIQ 124
T D +T +H A G+ ++ LL+ G K+ G +PLH+A+ E+V LL++
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
+VN+VN++G + LHYA SK + +LLE GA+
Sbjct: 96 GA----------HVNAVNQNGCTPLHYA-----------ASKNRHEIAVMLLEGGANPDA 134
Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
+ + TA H A GN ++ +L + T I Q + G TPL +AC+ +E
Sbjct: 135 KDHYD-ATAMHRAAAKGNLKMVHILLFYKASTNI------QDTEGNTPLHLACDEERVEE 187
Query: 245 VNTMLNNHARVDVFDQEGRSALHLA 269
++ A + + ++E ++ L +A
Sbjct: 188 AKFLVTQGASIYIENKEEKTPLQVA 212
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNI-------AARVKDGDRCALMLLKSGAGPN 64
+PLHIAA D LL GA N N A K+ A+MLL+ GA P+
Sbjct: 75 SPLHIAASA-GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
T +H AA GNL + +LL ++ G TPLHLA + E L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 125 -----FVQNISQEKVLE 136
+++N ++ L+
Sbjct: 194 QGASIYIENKEEKTPLQ 210
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 393 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK 452
A G + ++E + D+S ++ R T L A GH +V L++ G D++
Sbjct: 14 AYSGKLDELKERILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 453 TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512
G++ +H+AA G +++++ + A + G T LH AA + + LL G
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE---G 128
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
D T +H AA GN +V +LL
Sbjct: 129 GANPDAK----------DHYDATAMHRAAAKGNLKMVHILL 159
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIA-------ARVKDGDRCALMLLKSGAGPN 64
TPLH AA K+ A+MLL+ GA P+ + A K + +LL A N
Sbjct: 108 TPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
+ +G TP+H A + + L+ G +NK +TPL +A
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 35/158 (22%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL+ G N D G +P+H AA G ++ LL G N+ G TPLH A+
Sbjct: 58 FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117
Query: 115 KAEVVDLLIQFVQNISQEK---------------------VLEYVNSVN---EDGASALH 150
+ E+ +L++ N + +L Y S N +G + LH
Sbjct: 118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177
Query: 151 YACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
AC + E K L+ GA + ++ K+
Sbjct: 178 LACDEERVE-----------EAKFLVTQGASIYIENKE 204
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP-- 375
+QTPLHLA Q ++ + LL G + D +G P+H+A + + ++
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 376 ---SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG 432
S++ AT +G+TC H+A++ G +G++E L+ ++A+ T L LA +
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQ 159
Query: 433 HANVVRVLVKAGASCTDENKTGFTAVHL 460
+ ++V +L+K GA G++ L
Sbjct: 160 NPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 22/177 (12%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS-RNCKAEVVDLL 122
N + QTP+H A + LL G DP ++ G TPLHLA + C A V L
Sbjct: 36 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL- 94
Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
Q+ + + + + N +G + LH A + V+LL+ GADV
Sbjct: 95 ---TQSCTTPHLHSILKATNYNGHTCLHLA-----------SIHGYLGIVELLVSLGADV 140
Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNR 239
+ Q N TA H N D+++ +L+ G ++ N+ T G++P + R
Sbjct: 141 NAQEPCNGRTALHLAVDLQNPDLVSLLLK--CGADV----NRVTYQGYSPYQLTWGR 191
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMY------KNKIGETPLHL 109
LL +G P L G TP+H A + G L ++ +L + P N G T LHL
Sbjct: 61 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 120
Query: 110 ASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQ 169
AS + +V+LL+ +++ ++ +G +ALH A + +L
Sbjct: 121 ASIHGYLGIVELLVSLGADVNAQEPC--------NGRTALHLAVDLQNPDL--------- 163
Query: 170 KTVKLLLEAGADVSLQTKQNH 190
V LLL+ GADV+ T Q +
Sbjct: 164 --VSLLLKCGADVNRVTYQGY 182
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 18/153 (11%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
LN Q ++ TPL +A E+ +L ++ D G + LHLA E G L +S
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL--ASVG 92
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
L S + PH +H +++ T LHLA+ G L + +LL+ LG
Sbjct: 93 VLTQSCTT----PH--------LH---SILKATNYNGHTCLHLASIHGYLGIVELLVSLG 137
Query: 342 ASIDATDD-QGQKPIHVAAQNNFPEVAQIFLRA 373
A ++A + G+ +H+A P++ + L+
Sbjct: 138 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRS--GVISARNRVTEATPLQLAAEGGHANVVRV 439
T+DG++ H+A + + E+++ + ++ +N + + TPL LA +
Sbjct: 2 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEA 60
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNG---HNQVLEEMRSSKALNVYSKKL---GVTALHV 493
L+ AG + G T +HLA + G VL + ++ L+ K G T LH+
Sbjct: 61 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 120
Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
A+ G V ELL + V + P +G T LHLA N ++V LLL
Sbjct: 121 ASIHGYLGIV-ELLVSLGADVNAQEPC-----------NGRTALHLAVDLQNPDLVSLLL 168
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 130/299 (43%), Gaps = 33/299 (11%)
Query: 160 LIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
LI ED V+ LLE GA+V+ Q ++ T H D++ +L + +
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
K G TP L+A G ++L+ L+ A V+ D G +A AA +G +K
Sbjct: 69 K------KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122
Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK--QTPLHLAAEAGQLQVCKLL 337
+ + ++ R D LRK T L AAE G ++V K+L
Sbjct: 123 FLYKRGANVNLRRKTKE---------------DQERLRKGGATALMDAAEKGHVEVLKIL 167
Query: 338 LD-LGASIDATDDQGQKP-IHVAAQNNFPEVAQI--FLRAHPSLVTATTKDGNTCAHIAA 393
LD +GA ++A D+ G+ IH ++ +V I L H + V + G T +A
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227
Query: 394 MQGSVGVIEELMKFDRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGAS--CTD 449
+ +G+++ L++ + I + ++ T L LA E + +L K GAS C D
Sbjct: 228 EKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 105/229 (45%), Gaps = 19/229 (8%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LL+ GA P L +G TP AA G++ L+L L G D + G T A+
Sbjct: 57 LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116
Query: 115 KAEVVDLLIQFVQNIS-QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVK 173
K + + L + N++ + K E + + GA+AL A + E++ I
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI---------- 166
Query: 174 LLLEAGADVSLQTKQNHETAFHYCAVAGNNDV--LTGMLEQMSGTEISKALNKQTSIGWT 231
LL E GADV+ H + ++DV +T +L G ++ N + G T
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADV----NVRGERGKT 221
Query: 232 PLLIACNRGHMELVNTMLN-NHARVDVFDQEGRSALHLAAEHGYLKVSS 279
PL++A + H+ LV +L H ++ D +G++AL LA E K++
Sbjct: 222 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 13/178 (7%)
Query: 358 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN 417
A QN ++ Q L ++ + G T H A ++E L++ V+ +N
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 418 RVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM---- 473
ATP LAA G ++++ + GA + + GFTA AA G + L+ +
Sbjct: 72 G---ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128
Query: 474 ------RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFL 525
R +K +K G TAL AA G + ++ LL + V + G + L
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 461 AAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPP 519
A QN +++++ A +N ++ G T LH A + D V LL H +DP
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-----GADPV 66
Query: 520 TGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
L ++G TP LAA +G+ +++L L S G V+
Sbjct: 67 --------LRKKNGATPFLLAAIAGSVKLLKLFL-SKGADVN 99
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 29/187 (15%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V+ LL + + LQ Q+ H+ +++ + +L +M + + GWT
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD---DYPDDSGWT 74
Query: 232 PLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
P IAC+ G++E+V ++ + + D+ +G + LHLA + +VS
Sbjct: 75 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ---------- 124
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATD 348
FL+ + A+V I Q PLH AA G L++ +LL LG S ++ D
Sbjct: 125 ------------FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Query: 349 DQGQKPI 355
QG P+
Sbjct: 172 KQGWTPL 178
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 83/212 (39%), Gaps = 18/212 (8%)
Query: 354 PIHVAA-QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV 412
P+H A +N F +V ++ L + PSL+ +DG H + + + L+ +
Sbjct: 5 PLHQACMENEFFKVQEL-LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 413 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKT---GFTAVHLAAQNGHNQV 469
+ + TP +A G+ VV+ L D NK G T +HLA +V
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 470 LEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELG 529
+ + + A K LH AA G + ELL + G S +
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI-ELLCGL----------GKSAVN-WQ 170
Query: 530 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
+ G TPL A G+ + LL+ G + D
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 71/202 (35%), Gaps = 64/202 (31%)
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI---GETPLHLASRNCKAEVVDLLIQ 124
D G TP H A GNL ++ L + P NKI G T LHLA EV LI
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLI- 127
Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
E+GAS V +
Sbjct: 128 ------------------ENGAS----------------------------------VRI 135
Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
+ K N + H A G+ ++E + G S A+N Q GWTPL A GH +
Sbjct: 136 KDKFN-QIPLHRAASVGS----LKLIELLCGLGKS-AVNWQDKQGWTPLFHALAEGHGDA 189
Query: 245 VNTMLNNH-ARVDVFDQEGRSA 265
++ + A D+ D +G A
Sbjct: 190 AVLLVEKYGAEYDLVDNKGAKA 211
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIA---------ARVKDGDRCALMLLKSGAG 62
TP HIA V + + L P+L I A K + L+++GA
Sbjct: 74 TPFHIACSVGNLE-VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPM-YKNKIGETPL 107
+ Q P+H AA G+L ++LL G + +++K G TPL
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 66/171 (38%), Gaps = 24/171 (14%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARV---DVFDQEGRSALHLAAEHGYLKVSSGKSLKH 285
G PL + + E+ + +L+ V D D G + H+A G L+V KSL
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVV--KSLYD 93
Query: 286 SVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 345
+ P N I N + T LHLA +V + L++ GAS+
Sbjct: 94 RPLK---PDLNKITN----------------QGVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 346 ATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 396
D Q P+H AA ++ ++ S V K G T A +G
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N T+ G T +H A Q L+E+G K+K + PLH A+ ++++LL
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 29/187 (15%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V+ LL + + LQ Q+ H+ +++ + +L +M + + GWT
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD---DYPDDSGWT 74
Query: 232 PLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
P IAC+ G++E+V ++ + + D+ +G + LHLA + +VS
Sbjct: 75 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ---------- 124
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATD 348
FL+ + A+V I Q PLH AA G L++ +LL LG S ++ D
Sbjct: 125 ------------FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Query: 349 DQGQKPI 355
QG P+
Sbjct: 172 KQGWTPL 178
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 83/212 (39%), Gaps = 18/212 (8%)
Query: 354 PIHVAA-QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV 412
P+H A +N F +V ++ L + PSL+ +DG H + + + L+ +
Sbjct: 5 PLHQACMENEFFKVQEL-LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 413 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKT---GFTAVHLAAQNGHNQV 469
+ + TP +A G+ VV+ L D NK G T +HLA +V
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 470 LEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELG 529
+ + + A K LH AA G + ELL + G S +
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI-ELLCGL----------GKSAVN-WQ 170
Query: 530 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
+ G TPL A G+ + LL+ G + D
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 71/202 (35%), Gaps = 64/202 (31%)
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI---GETPLHLASRNCKAEVVDLLIQ 124
D G TP H A GNL ++ L + P NKI G T LHLA EV LI
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLI- 127
Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
E+GAS V +
Sbjct: 128 ------------------ENGAS----------------------------------VRI 135
Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
+ K N + H A G+ ++E + G S A+N Q GWTPL A GH +
Sbjct: 136 KDKFN-QIPLHRAASVGS----LKLIELLCGLGKS-AVNWQDKQGWTPLFHALAEGHGDA 189
Query: 245 VNTMLNNH-ARVDVFDQEGRSA 265
++ + A D+ D +G A
Sbjct: 190 AVLLVEKYGAEYDLVDNKGAKA 211
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIA---------ARVKDGDRCALMLLKSGAG 62
TP HIA V + + L P+L I A K + L+++GA
Sbjct: 74 TPFHIACSVGNLE-VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPM-YKNKIGETPLHLASRNCKAEVVDL 121
+ Q P+H AA G+L ++LL G + +++K G TPL A + L
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192
Query: 122 LIQ 124
L++
Sbjct: 193 LVE 195
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 66/171 (38%), Gaps = 24/171 (14%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARV---DVFDQEGRSALHLAAEHGYLKVSSGKSLKH 285
G PL + + E+ + +L+ V D D G + H+A G L+V KSL
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVV--KSLYD 93
Query: 286 SVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 345
+ P N I N + T LHLA +V + L++ GAS+
Sbjct: 94 RPLK---PDLNKITN----------------QGVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 346 ATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 396
D Q P+H AA ++ ++ S V K G T A +G
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 29/187 (15%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V+ LL + + LQ Q+ H+ +++ + +L +M + + GWT
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD---DYPDDSGWT 74
Query: 232 PLLIACNRGHMELVNTMLNNHARVDV--FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
P IAC+ G++E+V ++ + + D+ +G + LHLA + +VS
Sbjct: 75 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ---------- 124
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATD 348
FL+ + A+V I Q PLH AA G L++ +LL LG S ++ D
Sbjct: 125 ------------FLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Query: 349 DQGQKPI 355
QG P+
Sbjct: 172 KQGWTPL 178
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 83/212 (39%), Gaps = 18/212 (8%)
Query: 354 PIHVAA-QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV 412
P+H A +N F +V ++ L + PSL+ +DG H + + + L+ +
Sbjct: 5 PLHQACMENEFFKVQEL-LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 413 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKT---GFTAVHLAAQNGHNQV 469
+ + TP +A G+ VV+ L D NK G T +HLA +V
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK-PDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 470 LEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELG 529
+ + + A K LH AA G + ELL + G S +
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI-ELLCGL----------GKSAVN-WQ 170
Query: 530 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
+ G TPL A G+ + LL+ G + D
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 71/202 (35%), Gaps = 64/202 (31%)
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI---GETPLHLASRNCKAEVVDLLIQ 124
D G TP H A GNL ++ L + P NKI G T LHLA EV LI
Sbjct: 70 DSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLI- 127
Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
E+GAS V +
Sbjct: 128 ------------------ENGAS----------------------------------VRI 135
Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMEL 244
+ K N + H A G+ ++E + G S A+N Q GWTPL A GH +
Sbjct: 136 KDKFN-QIPLHRAASVGS----LKLIELLCGLGKS-AVNWQDKQGWTPLFHALAEGHGDA 189
Query: 245 VNTMLNNH-ARVDVFDQEGRSA 265
++ + A D+ D +G A
Sbjct: 190 AVLLVEKYGAEYDLVDNKGAKA 211
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIA---------ARVKDGDRCALMLLKSGAG 62
TP HIA V + + L P+L I A K + L+++GA
Sbjct: 74 TPFHIACSVGNLEVVK-SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPM-YKNKIGETPL 107
+ Q P+H AA G+L ++LL G + +++K G TPL
Sbjct: 133 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 66/171 (38%), Gaps = 24/171 (14%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARV---DVFDQEGRSALHLAAEHGYLKVSSGKSLKH 285
G PL + + E+ + +L+ V D D G + H+A G L+V KSL
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVV--KSLYD 93
Query: 286 SVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 345
+ P N I N + T LHLA +V + L++ GAS+
Sbjct: 94 RPLK---PDLNKITN----------------QGVTCLHLAVGKKWFEVSQFLIENGASVR 134
Query: 346 ATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 396
D Q P+H AA ++ ++ S V K G T A +G
Sbjct: 135 IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 185
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N T+ G T +H A Q L+E+G K+K + PLH A+ ++++LL
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 7/148 (4%)
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP-- 375
+QTPLHLA Q ++ + LL G + D +G P+H+A + + ++
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 376 ---SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG 432
S++ AT +G+TC H+A++ G +G++E L+ ++A+ T L LA +
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD--VNAQEPCNGRTALHLAVDLQ 162
Query: 433 HANVVRVLVKAGASCTDENKTGFTAVHL 460
+ ++V +L+K GA G++ L
Sbjct: 163 NPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 22/177 (12%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA-SRNCKAEVVDLL 122
N + QTP+H A + LL G DP ++ G TPLHLA + C A V L
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL- 97
Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
Q+ + + + + N +G + LH A + V+LL+ GADV
Sbjct: 98 ---TQSCTTPHLHSILKATNYNGHTCLHLA-----------SIHGYLGIVELLVSLGADV 143
Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNR 239
+ Q N TA H N D+++ +L+ G ++ N+ T G++P + R
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLLK--CGADV----NRVTYQGYSPYQLTWGR 194
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMY------KNKIGETPLHL 109
LL +G P L G TP+H A + G L ++ +L + P N G T LHL
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123
Query: 110 ASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQ 169
AS + +V+LL+ +++ ++ +G +ALH A + +L
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPC--------NGRTALHLAVDLQNPDL--------- 166
Query: 170 KTVKLLLEAGADVSLQTKQNH 190
V LLL+ GADV+ T Q +
Sbjct: 167 --VSLLLKCGADVNRVTYQGY 185
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 18/153 (11%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
LN Q ++ TPL +A E+ +L ++ D G + LHLA E G L +S
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL--ASVG 95
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
L S + PH +H +++ T LHLA+ G L + +LL+ LG
Sbjct: 96 VLTQSCTT----PH--------LH---SILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140
Query: 342 ASIDATDD-QGQKPIHVAAQNNFPEVAQIFLRA 373
A ++A + G+ +H+A P++ + L+
Sbjct: 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRS--GVISARNRVTEATPLQLAAEGGHANVVRV 439
T+DG++ H+A + + E+++ + ++ +N + + TPL LA +
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEA 63
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNG---HNQVLEEMRSSKALNVYSKKL---GVTALHV 493
L+ AG + G T +HLA + G VL + ++ L+ K G T LH+
Sbjct: 64 LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123
Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
A+ G V ELL + V + P +G T LHLA N ++V LLL
Sbjct: 124 ASIHGYLGIV-ELLVSLGADVNAQEPC-----------NGRTALHLAVDLQNPDLVSLLL 171
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 65/108 (60%), Gaps = 4/108 (3%)
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 441
+KDGNT H AA G +++L+ + ++AR++ TPL LAA+ GHA +V++L+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLL--SKGADVNARSKDGN-TPLHLAAKNGHAEIVKLLL 62
Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVT 489
GA +K G T HLA +NGH++++ ++ +K +V ++ G +
Sbjct: 63 AKGADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGADVNARSWGSS 109
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
TPLH AA+ G + K LL GA ++A G P+H+AA+N E+ ++ L A + V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADV 68
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEEL 404
A +KDGNT H+A G +++ L
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 20/120 (16%)
Query: 67 TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
+ DG TP+H AAK G+ ++ LL G D ++K G TPLHLA++N AE+V LL+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 127 QNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQT 186
+ VN+ ++DG + H A + E+ VKLL GADV+ ++
Sbjct: 66 AD---------VNARSKDGNTPEHLAKKNGHHEI-----------VKLLDAKGADVNARS 105
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
LL GA N + DG TP+H AAK G+ ++LLL G D ++K G TP HLA +N
Sbjct: 28 LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87
Query: 116 AEVVDLL 122
E+V LL
Sbjct: 88 HEIVKLL 94
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 16/114 (14%)
Query: 452 KTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
K G T +H AA+NGH + ++++ S A +N SK G T LH+AA G A+ V+ LL+
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLA-- 63
Query: 511 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
GA S+ G TP HLA +G+ +V+ LL++ G V+A++
Sbjct: 64 ---------KGADVNAR--SKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNARS 105
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNV 481
TPL AA+ GHA V+ L+ GA +K G T +HLAA+NGH ++++ + + A +N
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 482 YSKKLGVTALHVAAYFGQADTVREL 506
SK G T H+A G + V+ L
Sbjct: 71 RSKD-GNTPEHLAKKNGHHEIVKLL 94
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 293 PPHNIIPNGFLVH-----DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 347
P HN NG A ++ + TPLHLAA+ G ++ KLLL GA ++A
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71
Query: 348 DDQGQKPIHVAAQNNFPEVAQIF 370
G P H+A +N E+ ++
Sbjct: 72 SKDGNTPEHLAKKNGHHEIVKLL 94
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 409
G P+H AA+N E + L + + V A +KDGNT H+AA G +++ L+ +
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA--K 64
Query: 410 SGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCT 448
++AR++ TP LA + GH +V++L GA
Sbjct: 65 GADVNARSKDGN-TPEHLAKKNGHHEIVKLLDAKGADVN 102
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 481 VYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 540
++ K G T LH AA G A+ V++LLS GA S+ G TPLHLA
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLS-----------KGADVNAR--SKDGNTPLHLA 49
Query: 541 AYSGNENVVRLLLNSAGVQVDAQTQE 566
A +G+ +V+LLL + G V+A++++
Sbjct: 50 AKNGHAEIVKLLL-AKGADVNARSKD 74
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 21/110 (19%)
Query: 97 MYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVT 156
M+ +K G TPLH A++N AE V L+ + VN+ ++DG + LH A +
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---------VNARSKDGNTPLHLAAKNG 53
Query: 157 KAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVL 206
AE+ VKLLL GADV+ ++K T H G+++++
Sbjct: 54 HAEI-----------VKLLLAKGADVNARSKDG-NTPEHLAKKNGHHEIV 91
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 23/116 (19%)
Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
TPL A GH E V +L+ A V+ ++G + LHLAA++G+ ++
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI------------V 58
Query: 291 RLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 346
+L ++ G A ++ + TP HLA + G ++ KLL GA ++A
Sbjct: 59 KL----LLAKG-------ADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 18/96 (18%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGD------------RCALMLLKS 59
TPLH AA+ + +L K ++ AR KDG+ +LL
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKG------ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGD 95
GA N + DG TP H A K G+ ++LL G D
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
T H A G+ + + +L + G ++ N ++ G TPL +A GH E+V +L
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSK--GADV----NARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 252 HARVDVFDQEGRSALHLAAEHGYLKV 277
A V+ ++G + HLA ++G+ ++
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEI 90
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 130/299 (43%), Gaps = 33/299 (11%)
Query: 160 LIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
LI ED V+ LLE GA+V+ Q ++ T H D++ +L + +
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
K G TP ++A G ++L+ L+ A V+ D G +A AA +G +K
Sbjct: 89 K------KNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 142
Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK--QTPLHLAAEAGQLQVCKLL 337
+ + ++ R D LRK T L AAE G ++V K+L
Sbjct: 143 FLYKRGANVNLRRKTKE---------------DQERLRKGGATALMDAAEKGHVEVLKIL 187
Query: 338 LD-LGASIDATDDQGQKP-IHVAAQNNFPEVAQI--FLRAHPSLVTATTKDGNTCAHIAA 393
LD +GA ++A D+ G+ IH ++ +V I L H + V + G T +A
Sbjct: 188 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 247
Query: 394 MQGSVGVIEELMKFDRSGVISARNRVTEA-TPLQLAAEGGHANVVRVLVKAGAS--CTD 449
+ +G+++ L++ + I + ++ T L LA E + +L K GAS C D
Sbjct: 248 EKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 303
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 105/229 (45%), Gaps = 19/229 (8%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LL+ GA P L +G TP AA G++ L+L L G D + G T A+
Sbjct: 77 LLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 136
Query: 115 KAEVVDLLIQFVQNIS-QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVK 173
K + + L + N++ + K E + + GA+AL A + E++ I
Sbjct: 137 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI---------- 186
Query: 174 LLLEAGADVSLQTKQNHETAFHYCAVAGNNDV--LTGMLEQMSGTEISKALNKQTSIGWT 231
LL E GADV+ H + ++DV +T +L G ++ N + G T
Sbjct: 187 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADV----NVRGERGKT 241
Query: 232 PLLIACNRGHMELVNTML-NNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
PL++A + H+ LV +L H ++ D +G++AL LA E K++
Sbjct: 242 PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 290
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 129/294 (43%), Gaps = 47/294 (15%)
Query: 86 LQLLLEDGGDPMYKNKIG-ETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNED 144
+Q LLE G + ++ + G TPLH A + + ++V+LL++ + VL N
Sbjct: 41 VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH----GADPVLRKKN----- 91
Query: 145 GASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNND 204
GA+ A +L+ KL L GADV+ + TAF AV G
Sbjct: 92 GATPFILAAIAGSVKLL-----------KLFLSKGADVN-ECDFYGFTAFMEAAVYGKVK 139
Query: 205 VLTGMLEQMSGTEISKALNKQTSI----GWTPLLIACNRGHMELVNTMLNNH-ARVDVFD 259
L + ++ + + + + G T L+ A +GH+E++ +L+ A V+ D
Sbjct: 140 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 199
Query: 260 QEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQ 319
GR+A L H+++S I + L+ DH A +++ R +
Sbjct: 200 NMGRNA-----------------LIHALLSSDDSDVEAITH--LLLDHGADVNVRGERGK 240
Query: 320 TPLHLAAEAGQLQVCKLLLDLG-ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
TPL LA E L + + LL+ I+ TD G+ + +A + ++A++ +
Sbjct: 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 13/169 (7%)
Query: 358 AAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN 417
A QN ++ Q L ++ + G T H A ++E L++ V+ +N
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 91
Query: 418 RVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEM---- 473
ATP LAA G ++++ + GA + + GFTA AA G + L+ +
Sbjct: 92 G---ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 148
Query: 474 ------RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 516
R +K +K G TAL AA G + ++ LL + V +
Sbjct: 149 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 197
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 461 AAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPP 519
A QN +++++ A +N ++ G T LH A + D V LL H +DP
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-----GADPV 86
Query: 520 TGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
L ++G TP LAA +G+ +++L L S G V+
Sbjct: 87 --------LRKKNGATPFILAAIAGSVKLLKLFL-SKGADVN 119
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 30/204 (14%)
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLT------GMLEQMSGTEISKALNKQTSI 228
L+EAG DV K+N T H+ A+ D++ +++Q+ G LN
Sbjct: 28 LVEAGYDVRQPDKEN-VTLLHWAAINNRIDLVKYYISKGAIVDQLGGD-----LNS---- 77
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV-----SSGKSL 283
TPL A +GH+ +V ++ A + D EG S +HLAA+ G+ + + G+ +
Sbjct: 78 --TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 284 KH-------SVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 336
+M H++ P L+ + +V K T LH A AG V L
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195
Query: 337 LLDLGASIDATDDQGQKPIHVAAQ 360
LL+ GA++DA + +G+ + +A Q
Sbjct: 196 LLEAGANVDAQNIKGESALDLAKQ 219
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 16/182 (8%)
Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
K+ T H AA+ + +++ + + ++ +TPL A GH ++V L+K
Sbjct: 40 KENVTLLHWAAINNRIDLVKYYIS--KGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK 97
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQA-D 501
GA + + G + +HLAAQ GH ++ + + + G+T L AAY + D
Sbjct: 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
R LL T G + T LH A +GN V+ LLL AG VD
Sbjct: 158 PTRLLL-----TFNVSVNLGDKYHKN-------TALHWAVLAGNTTVISLLL-EAGANVD 204
Query: 562 AQ 563
AQ
Sbjct: 205 AQ 206
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
L D TP+H A + G+L + L++ G DP + G + +HLA++ +V LI
Sbjct: 71 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
Q+ V+ ++++G + L +A T + +LLL V+L
Sbjct: 131 KGQD---------VDMMDQNGMTPLMWAAYRTHSV----------DPTRLLLTFNVSVNL 171
Query: 185 QTKQNHETAFHYCAVAGNNDVLTGMLE 211
K + TA H+ +AGN V++ +LE
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLE 198
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 20/131 (15%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS-RNC 114
L+K GA P+L +G + +H AA++G+ + L+ G D ++ G TPL A+ R
Sbjct: 95 LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
+ LL+ F N+S +Y + +ALH+A +I L
Sbjct: 155 SVDPTRLLLTF--NVSVNLGDKYHKN------TALHWAVLAGNTTVIS-----------L 195
Query: 175 LLEAGADVSLQ 185
LLEAGA+V Q
Sbjct: 196 LLEAGANVDAQ 206
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 18/195 (9%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
T LH A + + K L++ GA+I+ D++G P+H AA + ++A+ +L + + V
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE-YLISQGAHVG 133
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAE---GGHAN 435
A +G+T IA + +++ + +R GV I A + E L+ A + GH N
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQN--EVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191
Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAA 495
VR K+G TA+H+AA G+ +VL+ + ++ G T LH AA
Sbjct: 192 DVR-----------HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA 240
Query: 496 YFGQADTVRELLSHV 510
++G+ + R L+ ++
Sbjct: 241 HWGKEEACRILVENL 255
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 110/273 (40%), Gaps = 51/273 (18%)
Query: 28 LMLLKSGAGPNLTNI-------AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKY 80
L LL+ GA N N+ A + D L+++GA N ++G P+HAAA
Sbjct: 57 LRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116
Query: 81 GNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNS 140
G L + L+ G N G+TPL +A E++ N
Sbjct: 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ------------------NE 158
Query: 141 VNEDGASALHYACQVTKAELIPITSKEDQKTV----KLLLEAGADVSLQTKQNHETAFHY 196
VN G I KE+++ + + L +G ++ ++ TA H
Sbjct: 159 VNRQGVD-------------IEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHV 205
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
A G +VL +++ I + GWTPL A + G E ++ N ++
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNI------KDYDGWTPLHAAAHWGKEEACRILVENLCDME 259
Query: 257 VFDQEGRSALHLAAEH--GYL-KVSSGKSLKHS 286
++ G++A +A E GYL ++ ++L HS
Sbjct: 260 AVNKVGQTAFDVADEDILGYLEELQKKQNLLHS 292
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 112/286 (39%), Gaps = 68/286 (23%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
L AC+ G E V +L A ++ + +G +ALH A
Sbjct: 44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC---------------------- 81
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
N+ FLV ++ A I+ PLH AA G L + + L+ GA + A + +G
Sbjct: 82 IDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGD 140
Query: 353 KPIHVAA--------QNNF-----------PEVAQIFLRAHPSLVTAT-------TKDGN 386
P+ +A QN E +I LR + + K G
Sbjct: 141 TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG 200
Query: 387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVT-----EATPLQLAAEGGHANVVRVLV 441
T H+AA +G V++ L I AR V TPL AA G R+LV
Sbjct: 201 TALHVAAAKGYTEVLKLL--------IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
Query: 442 KAGASCTDENKTGFTAVHLAAQN--GHNQVLEEMRSSKALNVYSKK 485
+ NK G TA +A ++ G+ LEE++ + L ++S+K
Sbjct: 253 ENLCDMEAVNKVGQTAFDVADEDILGY---LEELQKKQNL-LHSEK 294
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D +G P+H+AA + E+ ++ L+ H + V A D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-HGADVNAHDND 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
G+T H+AA+ G + ++E L+K ++A+++ + T ++ + G+ ++ +L K
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLK--HGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
+ TPLHLAA+ L++ ++LL GA ++A D+ G P+H+AA E+ ++ L+ H +
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK-HGA 104
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
V A K G T I+ G+ + E L K
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V A + GNT H+AA + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
++A + +TPL LAA GH +V VL+K GA ++K G TA ++ NG+
Sbjct: 69 HGADVNAHDN-DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
+ E
Sbjct: 128 LAE 130
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D++G + LHLAA++ +L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ H A ++ TPLHLAA G L++ ++LL GA ++A D G+
Sbjct: 65 ----------VLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGK 114
Query: 353 KPIHVAAQNNFPEVAQIF 370
++ N ++A+I
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N G TP+H AA Y +L +++LL+ G D +
Sbjct: 21 AARAGQDDEVRI-LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNI-SQEK 133
G TPLHLA+ E+V++L++ ++ +Q+K
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKL 486
AA G + VR+L+ GA ++ G T +HLAA H +++E + A +N +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND- 79
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G T LH+AA FG + V LL H D + G T ++ +GNE
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQD-------------KFGKTAFDISIDNGNE 126
Query: 547 NVVRLL 552
++ +L
Sbjct: 127 DLAEIL 132
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 22/138 (15%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA+ G +++L+ +G D ++ G TPLHLA+ E+V++L++ +
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD-------- 72
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VN+ + DG++ LH A E+ V++LL+ GADV+ Q K +TAF
Sbjct: 73 -VNAHDNDGSTPLHLAALFGHLEI-----------VEVLLKHGADVNAQDKFG-KTAFDI 119
Query: 197 CAVAGNNDVLTGMLEQMS 214
GN D L +L++++
Sbjct: 120 SIDNGNED-LAEILQKLN 136
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK GA N +DG TP+H AA +G+L +++LL+ G D ++K G+T ++ N
Sbjct: 65 VLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 125 NEDLAEIL 132
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA+ H +V VL+K GA + G T +HLAA GH +++E + A
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+N G TPL +A + H+E+V +L + A V+ D +G + LHLAA G+L++
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEI 95
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 7/102 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ ++ + T H A + +++ +L+ G ++ N + G T
Sbjct: 30 VRILMANGADVNANDRKGN-TPLHLAADYDHLEIVEVLLKH--GADV----NAHDNDGST 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
PL +A GH+E+V +L + A V+ D+ G++A ++ ++G
Sbjct: 83 PLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
M + +N +K G T LH+AA + + V LL H D
Sbjct: 34 MANGADVNANDRK-GNTPLHLAADYDHLEIVEVLLKHGADVNAHD-------------ND 79
Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565
G TPLHLAA G+ +V +LL G V+AQ +
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKH-GADVNAQDK 111
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 40/232 (17%)
Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
N + GA+ALH A ++++ K LLEA AD ++Q T H A
Sbjct: 51 NQTDRTGATALHLAAAYSRSD-----------AAKRLLEASADANIQDNMG-RTPLH-AA 97
Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
V+ + + +L + T++ ++ G TPL++A ++ ++N+HA V+
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHD----GTTPLILAARLAVEGMLEDLINSHADVNAV 153
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
D G+SALH AA + + ++ NG A D+ R+
Sbjct: 154 DDLGKSALHWAAAVNNVDAAV----------------VLLKNG-------ANKDMQNNRE 190
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
+TPL LAA G + K+LLD A+ D TD + P +A + ++ ++
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
T LHLAA + K LL+ A + D+ G+ P+H A + V QI +R + +
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELM 405
A DG T +AA G++E+L+
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLI 144
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 82/207 (39%), Gaps = 43/207 (20%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
N T G T +H AA Y + LLE D ++ +G TPLH A V +LI
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 124 Q------------------FVQNISQEKVLE-------YVNSVNEDGASALHYACQVTKA 158
+ ++ E +LE VN+V++ G SALH+A V
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN- 169
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+LL+ GA+ +Q + ET A G+ + +L+ + +I
Sbjct: 170 ----------VDAAVVLLKNGANKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDI 218
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELV 245
+ +++ P IA R H ++V
Sbjct: 219 TDHMDR------LPRDIAQERMHHDIV 239
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 478 ALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
+L+ + + G TALH+AA + ++D + LL AS + G TPL
Sbjct: 48 SLHNQTDRTGATALHLAAAYSRSDAAKRLLE-------------ASADANIQDNMGRTPL 94
Query: 538 HLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
H A + + V ++L+ + +DA+ +
Sbjct: 95 HAAVSADAQGVFQILIRNRATDLDARMHD 123
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 436 VVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 494
V+ + GAS ++ ++TG TA+HLAA + + + + A +G T LH A
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLH-A 96
Query: 495 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE--SGMTPLHLAAYSGNENVVRLL 552
A A V ++L T +L + G TPL LAA E ++ L
Sbjct: 97 AVSADAQGVFQILIRNRAT-------------DLDARMHDGTTPLILAARLAVEGMLEDL 143
Query: 553 LNS 555
+NS
Sbjct: 144 INS 146
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 40/232 (17%)
Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
N + G +ALH A + ++++ K LLEA AD ++Q T H A
Sbjct: 19 NQTDRTGETALHLAARYSRSD-----------AAKRLLEASADANIQDNMG-RTPLH-AA 65
Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
V+ + + +L + T++ ++ G TPL++A ++ ++N+HA V+
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHD----GTTPLILAARLAVEGMLEDLINSHADVNAV 121
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
D G+SALH AA + + ++ NG A D+ R+
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVV----------------LLKNG-------ANKDMQNNRE 158
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
+TPL LAA G + K+LLD A+ D TD + P +A + ++ ++
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+T LHLAA + K LL+ A + D+ G+ P+H A + V QI +R + +
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELM 405
A DG T +AA G++E+L+
Sbjct: 86 DARMHDGTTPLILAARLAVEGMLEDLI 112
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 29/214 (13%)
Query: 36 GPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLED-GG 94
G ++AAR D A LL++ A N+ + G+TP+HAA Q+L+ +
Sbjct: 25 GETALHLAARYSRSD-AAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 95 DPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQ 154
D + G TPL LA+R +++ LI + VN+V++ G SALH+A
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---------VNAVDDLGKSALHWAAA 134
Query: 155 VTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMS 214
V +LL+ GA+ +Q + ET A G+ + +L+ +
Sbjct: 135 VNN-----------VDAAVVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFA 182
Query: 215 GTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
+I+ +++ P IA R H ++V +
Sbjct: 183 NRDITDHMDR------LPRDIAQERMHHDIVRLL 210
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 478 ALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
+L+ + + G TALH+AA + ++D + LL AS + G TPL
Sbjct: 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLE-------------ASADANIQDNMGRTPL 62
Query: 538 HLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
H A + + V ++L+ + +DA+ +
Sbjct: 63 HAAVSADAQGVFQILIRNRATDLDARMHD 91
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 77/192 (40%), Gaps = 17/192 (8%)
Query: 364 PEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEAT 423
P V F+ SL T + G T H+AA + L++ I T
Sbjct: 4 PAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN---MGRT 60
Query: 424 PLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
PL A V ++L++ A+ D G T + LAA+ +LE++ +S A
Sbjct: 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
LG +ALH AA D LL GA+ ++ + TPL LAA
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLK-----------NGAN--KDMQNNREETPLFLAAR 167
Query: 543 SGNENVVRLLLN 554
G+ ++LL+
Sbjct: 168 EGSYETAKVLLD 179
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
LLK+GA ++ + +TP+ AA+ G+ T ++LL+ + + + P +A
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203
Query: 116 AEVVDLLIQF 125
++V LL ++
Sbjct: 204 HDIVRLLDEY 213
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 21/196 (10%)
Query: 259 DQEGRSALHLAAEHG-------YLKVSSGKSLKHSVMSFRLPPHNIIPNG------FLVH 305
D+ G +ALHLAA + L+ S+ +++ ++ R P H + L+
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNM--GRTPLHAAVSADAQGVFQILIR 79
Query: 306 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPE 365
+ A +D TPL LAA + + L++ A ++A DD G+ +H AA N +
Sbjct: 80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 139
Query: 366 VAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGVISARNRVTEATP 424
A + L+ + ++ T +AA +GS + L+ F + +R+ P
Sbjct: 140 AAVVLLKNGANKDMQNNRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL----P 194
Query: 425 LQLAAEGGHANVVRVL 440
+A E H ++VR+L
Sbjct: 195 RDIAQERMHHDIVRLL 210
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 436 VVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 494
V+ + GAS ++ ++TG TA+HLAA+ + + + + A +G T LH A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH-A 64
Query: 495 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE--SGMTPLHLAAYSGNENVVRLL 552
A A V ++L T +L + G TPL LAA E ++ L
Sbjct: 65 AVSADAQGVFQILIRNRAT-------------DLDARMHDGTTPLILAARLAVEGMLEDL 111
Query: 553 LNS 555
+NS
Sbjct: 112 INS 114
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 40/232 (17%)
Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
N + G +ALH A + ++++ K LLEA AD ++Q T H A
Sbjct: 52 NQTDRTGETALHLAARYSRSD-----------AAKRLLEASADANIQDNMG-RTPLH-AA 98
Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
V+ + + +L + T++ ++ G TPL++A ++ ++N+HA V+
Sbjct: 99 VSADAQGVFQILIRNRATDLDARMHD----GTTPLILAARLAVEGMLEDLINSHADVNAV 154
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
D G+SALH AA + + ++ NG A D+ R+
Sbjct: 155 DDLGKSALHWAAAVNNVDAAV----------------VLLKNG-------ANKDMQNNRE 191
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
+TPL LAA G + K+LLD A+ D TD + P +A + ++ ++
Sbjct: 192 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 243
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+T LHLAA + K LL+ A + D+ G+ P+H A + V QI +R + +
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELM 405
A DG T +AA G++E+L+
Sbjct: 119 DARMHDGTTPLILAARLAVEGMLEDLI 145
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 43/210 (20%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
N T G+T +H AA+Y + LLE D ++ +G TPLH A V +LI
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 111
Query: 124 Q------------------FVQNISQEKVLE-------YVNSVNEDGASALHYACQVTKA 158
+ ++ E +LE VN+V++ G SALH+A V
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 171
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+LL+ GA+ +Q + ET A G+ + +L+ + +I
Sbjct: 172 -----------DAAVVLLKNGANKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDI 219
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTM 248
+ +++ P IA R H ++V +
Sbjct: 220 TDHMDR------LPRDIAQERMHHDIVRLL 243
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 35/240 (14%)
Query: 229 GWTPLLIA-CNRGHMELVNTMLNNHARVDV-------------FDQEGRSALHLAAEHG- 273
G+TPL+IA C+ G +E N+ A + D+ G +ALHLAA +
Sbjct: 11 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 70
Query: 274 ------YLKVSSGKSLKHSVMSFRLPPHNIIPNG------FLVHDHAAVIDILTLRKQTP 321
L+ S+ +++ ++ R P H + L+ + A +D TP
Sbjct: 71 SDAAKRLLEASADANIQDNM--GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTP 128
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
L LAA + + L++ A ++A DD G+ +H AA N + A + L+ +
Sbjct: 129 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 188
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMK-FDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
++ T +AA +GS + L+ F + +R+ P +A E H ++VR+L
Sbjct: 189 NRE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL----PRDIAQERMHHDIVRLL 243
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 478 ALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
+L+ + + G TALH+AA + ++D + LL AS + G TPL
Sbjct: 49 SLHNQTDRTGETALHLAARYSRSDAAKRLLE-------------ASADANIQDNMGRTPL 95
Query: 538 HLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
H A + + V ++L+ + +DA+ +
Sbjct: 96 HAAVSADAQGVFQILIRNRATDLDARMHD 124
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
LLK+GA ++ + +TP+ AA+ G+ T ++LL+ + + + P +A
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 236
Query: 116 AEVVDLLIQF 125
++V LL ++
Sbjct: 237 HDIVRLLDEY 246
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 436 VVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 494
V+ + GAS ++ ++TG TA+HLAA+ + + + + A +G T LH A
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH-A 97
Query: 495 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE--SGMTPLHLAAYSGNENVVRLL 552
A A V ++L T +L + G TPL LAA E ++ L
Sbjct: 98 AVSADAQGVFQILIRNRAT-------------DLDARMHDGTTPLILAARLAVEGMLEDL 144
Query: 553 LNS 555
+NS
Sbjct: 145 INS 147
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG--VISARNRVTEATPLQLAAEGGHA 434
+ T +DG+T HIA +QG++ + L+ + G + N + + TPL LA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLAVITTLP 59
Query: 435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA---LNVYSKKL-GVTA 490
+VVR+LV AGAS ++ G TA HLA ++ L + S A L++ ++ G+TA
Sbjct: 60 SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 491 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
LHVA +TV+ LL GA + + +SG +PL A + + ++V+
Sbjct: 120 LHVAVNTECQETVQLLLER-----------GAD-IDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 551 LLLNSAGVQVDAQ 563
LLL G V+AQ
Sbjct: 168 LLLQH-GANVNAQ 179
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
Query: 311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
+DI +QTPLHLA V +LL+ GAS A D GQ H+A ++ P +
Sbjct: 39 LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98
Query: 371 L-RAHPSL--VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQL 427
L A P + A DG T H+A ++ L+ +R I A + + +PL
Sbjct: 99 LDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL--ERGADIDAVDIKSGRSPLIH 156
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNG 465
A E ++V++L++ GA+ + +G +A+H A+ G
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG 194
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 51/250 (20%)
Query: 68 DDGQTPVHAAAKYGNLVTLQL---LLEDGGDPM-YKNKIGETPLHLASRNCKAEVVDLLI 123
+DG TP+H A GNL + L + GG + N + +TPLHLA VV LL+
Sbjct: 7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
Query: 124 -------------QFVQNISQE--------KVLEY-------VNSVNEDGASALHYACQV 155
Q +++ E +L+ + + N DG +ALH A
Sbjct: 67 TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA--- 123
Query: 156 TKAELIPITSKEDQKTVKLLLEAGADV-SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMS 214
+ E Q+TV+LLLE GAD+ ++ K H AV N+ + +L Q
Sbjct: 124 --------VNTECQETVQLLLERGADIDAVDIKSGRSPLIH--AVENNSLSMVQLLLQHG 173
Query: 215 GTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGY 274
+N Q G + L A RG + LV T++ + A + + + L +A
Sbjct: 174 AN-----VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 228
Query: 275 LKVSSGKSLK 284
+ + GK+ +
Sbjct: 229 IDILRGKATR 238
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 23/229 (10%)
Query: 229 GWTPLLIACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGY-----LKVSS 279
G TPL IA +G++ LVN +D+++ ++ LHLA L V++
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 280 GKSL----KHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQ-----TPLHLAAEAGQ 330
G S +H + L + P +A L L + T LH+A
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 331 LQVCKLLLDLGASIDATD-DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 389
+ +LLL+ GA IDA D G+ P+ A +NN + Q+ L+ H + V A G++
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ-HGANVNAQMYSGSSAL 187
Query: 390 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
H A+ +G + ++ L+ RSG S+ TPL +A +++R
Sbjct: 188 HSASGRGLLPLVRTLV---RSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 67/210 (31%)
Query: 9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTD 68
LR+TPLH+A +T + + V+ +L+ +GA P
Sbjct: 45 LRQTPLHLAV--------------------ITTLPSVVR-------LLVTAGASPMALDR 77
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGG----DPMYKNKIGETPLHLA-------------S 111
GQT H A ++ + L+ LL+ D +N G T LH+A
Sbjct: 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137
Query: 112 RNCKAEVVDL------LIQFVQNISQEKV---LEY---VNSVNEDGASALHYACQVTKAE 159
R + VD+ LI V+N S V L++ VN+ G+SALH A +
Sbjct: 138 RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA---SGRG 194
Query: 160 LIPITSKEDQKTVKLLLEAGADVSLQTKQN 189
L+P+ V+ L+ +GAD SL+ N
Sbjct: 195 LLPL--------VRTLVRSGADSSLKNCHN 216
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LL+ GA N G + +H+A+ G L ++ L+ G D KN +TPL +A
Sbjct: 168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR--- 224
Query: 115 KAEVVDLL 122
V+D+L
Sbjct: 225 SRRVIDIL 232
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 40/232 (17%)
Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
N + G +ALH A + ++++ K LLEA AD ++Q T H A
Sbjct: 51 NQTDRTGETALHLAARYSRSD-----------AAKRLLEASADANIQDNMG-RTPLH-AA 97
Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
V+ + + +L + T++ ++ G TPL++A ++ ++N+HA V+
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHD----GTTPLILAARLAVEGMLEDLINSHADVNAV 153
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
D G+SALH AA + + ++ NG A D+ R+
Sbjct: 154 DDLGKSALHWAAAVNNVDAAV----------------VLLKNG-------ANKDMQNNRE 190
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
+TPL LAA G + K+LLD A+ D TD + P +A + ++ ++
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+T LHLAA + K LL+ A + D+ G+ P+H A + V QI +R + +
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELM 405
A DG T +AA G++E+L+
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLI 144
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 85/210 (40%), Gaps = 43/210 (20%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
N T G+T +H AA+Y + LLE D ++ +G TPLH A V +LI
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI 110
Query: 124 Q------------------FVQNISQEKVLE-------YVNSVNEDGASALHYACQVTKA 158
+ ++ E +LE VN+V++ G SALH+A V
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN- 169
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+LL+ GA+ +Q + ET A G+ + +L+ + +I
Sbjct: 170 ----------VDAAVVLLKNGANKDMQNNR-EETPLFLAAREGSYETAKVLLDHFANRDI 218
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTM 248
+ +++ P IA R H ++V +
Sbjct: 219 TDHMDR------LPRDIAQERMHHDIVRLL 242
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 478 ALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
+L+ + + G TALH+AA + ++D + LL AS + G TPL
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLE-------------ASADANIQDNMGRTPL 94
Query: 538 HLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
H A + + V ++L+ + +DA+ +
Sbjct: 95 HAAVSADAQGVFQILIRNRATDLDARMHD 123
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 17/196 (8%)
Query: 360 QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRV 419
+ + P V F+ SL T + G T H+AA + L++ I
Sbjct: 32 EEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN--- 88
Query: 420 TEATPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKA 478
TPL A V ++L++ A+ D G T + LAA+ +LE++ +S A
Sbjct: 89 MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148
Query: 479 LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLH 538
LG +ALH AA D LL + GA+ ++ + TPL
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-----------GAN--KDMQNNREETPLF 195
Query: 539 LAAYSGNENVVRLLLN 554
LAA G+ ++LL+
Sbjct: 196 LAAREGSYETAKVLLD 211
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 436 VVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 494
V+ + GAS ++ ++TG TA+HLAA+ + + + + A +G T LH A
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH-A 96
Query: 495 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE--SGMTPLHLAAYSGNENVVRLL 552
A A V ++L T +L + G TPL LAA E ++ L
Sbjct: 97 AVSADAQGVFQILIRNRAT-------------DLDARMHDGTTPLILAARLAVEGMLEDL 143
Query: 553 LNS 555
+NS
Sbjct: 144 INS 146
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
TPLHLAA G L++ ++LL GA ++AT + G+ P+H+AA + E+ ++ L+ H + V
Sbjct: 48 HTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLK-HGADV 106
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKF 407
A K G T I+ G+ + E L K
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V A G+T H+AAM G + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
+G T TPL LAA H +V VL+K GA ++K G TA ++ NG+
Sbjct: 69 -NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
+ E
Sbjct: 128 LAE 130
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L GA ++A D G P+H+AA E+ ++ L+ + + V AT
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLK-NGADVNATGNT 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
G T H+AA + ++E L+K ++A+++ + T ++ + G+ ++ +L K
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLK--HGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L +GA N G TP+H AA G+L +++LL++G D
Sbjct: 21 AARAGQDDEVRI-LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNI-SQEK 133
G TPLHLA+ E+V++L++ ++ +Q+K
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKHGADVNAQDK 111
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA GH +V VL+K GA TG T +HLAA H +++E + A
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L GA + G T +HLAA GH +++E + + A + G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA+ + V LL H D + G T ++ +GNE+
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQD-------------KFGKTAFDISIDNGNED 127
Query: 548 VVRLL 552
+ +L
Sbjct: 128 LAEIL 132
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK+GA N T + G+TP+H AA +L +++LL+ G D ++K G+T ++ N
Sbjct: 65 VLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 125 NEDLAEIL 132
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+N G TPL +A GH+E+V +L N A V+ GR+ LHLAA +L++
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEI 95
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 7/102 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L GADV+ H T H A+ G+ +++ +L+ +G ++ N + G T
Sbjct: 30 VRILTANGADVNANDYWGH-TPLHLAAMLGHLEIVEVLLK--NGADV----NATGNTGRT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
PL +A H+E+V +L + A V+ D+ G++A ++ ++G
Sbjct: 83 PLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 486 LGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 545
G T LH+AA G + V LL K+ A+ +G TPLHLAA++ +
Sbjct: 46 WGHTPLHLAAMLGHLEIVEVLL-------KNGADVNAT------GNTGRTPLHLAAWADH 92
Query: 546 ENVVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 93 LEIVEVLLKH-GADVNAQDK 111
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L AA GQ D VR L ++ +D
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILTANGADVNANDY-------------W 46
Query: 533 GMTPLHLAAYSGNENVVRLLL-NSAGVQVDAQT 564
G TPLHLAA G+ +V +LL N A V T
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT 79
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHLAA+ G L++ ++LL GA ++A D+ G P+H+AA E+ ++ L+ H + V
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK-HGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
A K G T I+ G+ + E L K +
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V A +DG T H+AA G + ++E L+K+
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
++A + TPL LAA GH +V VL+K GA ++K G TA ++ NG+
Sbjct: 71 AD--VNAEDNFG-ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
+ E
Sbjct: 128 LAE 130
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N +DG TP+H AA+ G+L +++LL+ G D ++
Sbjct: 21 AARAGQDDEVRI-LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 103 GETPLHLASRNCKAEVVDLLIQ 124
G TPLHLA+ E+V++L++
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLK 101
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 4/118 (3%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D+ G P+H+AAQ E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLK-YGADVNAEDNF 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
G T H+AA++G + ++E L+K ++A+++ + T ++ + G+ ++ +L K
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLK--HGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA+ GH +V VL+K GA E+ G T +HLAA GH +++E + A
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA ++ G T +HLAAQ GH +++E + A G
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
+T LH+AA G + V LL H D + G T ++ +GNE+
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGADVNAQD-------------KFGKTAFDISIDNGNED 127
Query: 548 VVRLL 552
+ +L
Sbjct: 128 LAEIL 132
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D++G + LHLAA+ G+L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ + A ++ TPLHLAA G L++ ++LL GA ++A D G+
Sbjct: 65 ----------VLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGK 114
Query: 353 KPIHVAAQNNFPEVAQIF 370
++ N ++A+I
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ ++ T H A G+ +++ +L+ G ++ N + + G T
Sbjct: 30 VRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKY--GADV----NAEDNFGIT 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
PL +A RGH+E+V +L + A V+ D+ G++A ++ ++G
Sbjct: 83 PLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK GA N + G TP+H AA G+L +++LL+ G D ++K G+T ++ N
Sbjct: 65 VLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 125 NEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
G TPL +A GH+E+V +L A V+ D G + LHLAA G+L++
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEI 95
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G+T LH+AA G + V LL + GA E G+TPLHLAA G+
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKY-----------GADVNAE--DNFGITPLHLAAIRGHL 93
Query: 547 NVVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 94 EIVEVLLKH-GADVNAQDK 111
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L AA GQ D VR L+++ D E
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILMANGADVNALD-------------ED 46
Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
G+TPLHLAA G+ +V +LL G V+A+
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLL-KYGADVNAE 76
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA+ G+L++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ H A ++ + +TPLHLAA G L++ ++LL+ GA ++A D G+
Sbjct: 65 ----------VLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Query: 353 KPIHVAAQNNFPEVAQIF 370
++ N ++A+I
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+L+ +GA N D G TP+H AAK G+L +++LL+ G D ++ G TPLHLA+
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVG 91
Query: 115 KAEVVDLLIQFVQNI-SQEK 133
E+V++L+++ ++ +Q+K
Sbjct: 92 HLEIVEVLLEYGADVNAQDK 111
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHLAA+ G L++ ++LL GA ++A D G+ P+H+AA E+ ++ L + + V
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE-YGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
A K G T I+ G+ + E L K +
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
A AGQ ++L+ GA ++A DD G P+H+AA+ E+ ++ L+ H + V A
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNARDIW 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
G T H+AA G + ++E L+++ ++A+++ + T ++ + G+ ++ +L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + EV L A+ + V A G T H+AA +G + ++E L+K
Sbjct: 13 DLGKKLLEATRAGQDDEVR--ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
++AR+ + TPL LAA GH +V VL++ GA ++K G TA ++ NG+
Sbjct: 69 HGADVNARD-IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
+ E
Sbjct: 128 LAE 130
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA+ GH +V VL+K GA + G T +HLAA GH +++E + A
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+N G TPL +A RGH+E+V +L + A V+ D GR+ LHLAA G+L++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEI 95
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 21/129 (16%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
A + G +++L+ +G D + G TPLHLA++ E+V++L++ +++ +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW- 79
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
G + LH A V E+ V++LLE GADV+ Q K +TAF
Sbjct: 80 --------GRTPLHLAATVGHLEI-----------VEVLLEYGADVNAQDKFG-KTAFDI 119
Query: 197 CAVAGNNDV 205
GN D+
Sbjct: 120 SIDNGNEDL 128
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK GA N G+TP+H AA G+L +++LLE G D ++K G+T ++ N
Sbjct: 65 VLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 125 NEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+L+ T V++L+ GADV+ T H A G+ +++ +L+ G ++
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLKH--GADV 73
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
N + G TPL +A GH+E+V +L A V+ D+ G++A ++ ++G
Sbjct: 74 ----NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
GVT LH+AA G + V LL H D G TPLHLAA G+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDI-------------WGRTPLHLAATVGHL 93
Query: 547 NVVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 94 EIVEVLL-EYGADVNAQDK 111
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L A GQ D VR L+++ D ++
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMD-------------DA 46
Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
G+TPLHLAA G+ +V +LL G V+A+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKH-GADVNAR 76
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%)
Query: 52 CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
AL LLK GA PN+ G +PVH AA+ G L TL++L+E G D + G P+HLA
Sbjct: 58 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 117
Query: 112 RNCKAEVVDLL 122
R + VV L
Sbjct: 118 REGHSSVVSFL 128
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 358 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 415
AA+ + EV ++ R HP A + G T + M GS V EL+K G
Sbjct: 18 AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSPAVALELLK---QGASPN 70
Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
+ +P+ AA G + ++VLV+ GA + TG +HLA + GH+ V+ +
Sbjct: 71 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
L+ + G+T L +A G + + L H+
Sbjct: 131 ESDLH-HRDASGLTPLELARQRGAQNLMDILQGHM 164
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Query: 337 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 396
LL GAS + D G P+H AA+ F + ++ + H + V A G+ H+A +G
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREG 120
Query: 397 SVGVI------EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
V+ +L D SG+ TPL+LA + G N++ +L
Sbjct: 121 HSSVVSFLAPESDLHHRDASGL----------TPLELARQRGAQNLMDIL 160
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
+P+H AA G L K+L++ GA ++A D G PIH+A + V
Sbjct: 78 SPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 23/138 (16%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA+ G+L++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ H A ++ + +TPLHLAA G L++ ++LL+ GA ++A D G+
Sbjct: 65 ----------VLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Query: 353 KPIHVAAQNNFPEVAQIF 370
++ N ++A+I
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHLAA+ G L++ ++LL GA ++A+D G+ P+H+AA E+ ++ L + + V
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE-YGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
A K G T I+ G+ + E L K +
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+L+ +GA N D G TP+H AAK G+L +++LL+ G D + G TPLHLA+
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVG 91
Query: 115 KAEVVDLLIQFVQNI-SQEK 133
E+V++L+++ ++ +Q+K
Sbjct: 92 HLEIVEVLLEYGADVNAQDK 111
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
A AGQ ++L+ GA ++A DD G P+H+AA+ E+ ++ L+ H + V A+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDIW 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
G T H+AA G + ++E L+++ ++A+++ + T ++ + G+ ++ +L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + EV L A+ + V A G T H+AA +G + ++E L+K
Sbjct: 13 DLGKKLLEATRAGQDDEVR--ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH- 69
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
G + + TPL LAA GH +V VL++ GA ++K G TA ++ NG+
Sbjct: 70 --GADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
+ E
Sbjct: 128 LAE 130
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA+ GH +V VL+K GA + G T +HLAA GH +++E + A
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+N G TPL +A RGH+E+V +L + A V+ D GR+ LHLAA G+L++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEI 95
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 21/129 (16%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
A + G +++L+ +G D + G TPLHLA++ E+V++L++ +++ +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW- 79
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
G + LH A V E+ V++LLE GADV+ Q K +TAF
Sbjct: 80 --------GRTPLHLAATVGHLEI-----------VEVLLEYGADVNAQDKFG-KTAFDI 119
Query: 197 CAVAGNNDV 205
GN D+
Sbjct: 120 SIDNGNEDL 128
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
A G + VR+L+ GA + G T +HLAA+ GH +++E + A S G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V LL + D + G T ++ +GNE+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQD-------------KFGKTAFDISIDNGNED 127
Query: 548 VVRLL 552
+ +L
Sbjct: 128 LAEIL 132
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK GA N + G+TP+H AA G+L +++LLE G D ++K G+T ++ N
Sbjct: 65 VLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 125 NEDLAEIL 132
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+L+ T V++L+ GADV+ T H A G+ +++ +L+ G ++
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLKH--GADV 73
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
N G TPL +A GH+E+V +L A V+ D+ G++A ++ ++G
Sbjct: 74 ----NASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
GVT LH+AA G + V LL H SD G TPLHLAA G+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDI-------------WGRTPLHLAATVGHL 93
Query: 547 NVVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 94 EIVEVLL-EYGADVNAQDK 111
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L A GQ D VR L+++ D ++
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMD-------------DA 46
Query: 533 GMTPLHLAAYSGNENVVRLLL 553
G+TPLHLAA G+ +V +LL
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL 67
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%)
Query: 52 CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
AL LLK GA PN+ G +PVH AA+ G L TL++L+E G D + G P+HLA
Sbjct: 56 VALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAI 115
Query: 112 RNCKAEVVDLL 122
R + VV L
Sbjct: 116 REGHSSVVSFL 126
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 358 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 415
AA+ + EV ++ R HP A + G T + M GS V EL+K G
Sbjct: 16 AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSPAVALELLK---QGASPN 68
Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
+ +P+ AA G + ++VLV+ GA + TG +HLA + GH+ V+ +
Sbjct: 69 VQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
L+ + G+T L +A G + + L H+
Sbjct: 129 ESDLH-HRDASGLTPLELARQRGAQNLMDILQGHM 162
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Query: 337 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 396
LL GAS + D G P+H AA+ F + ++ + H + V A G+ H+A +G
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREG 118
Query: 397 SVGVI------EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
V+ +L D SG+ TPL+LA + G N++ +L
Sbjct: 119 HSSVVSFLAPESDLHHRDASGL----------TPLELARQRGAQNLMDIL 158
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
+P+H AA G L K+L++ GA ++A D G PIH+A + V
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 40/232 (17%)
Query: 139 NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCA 198
N + G +ALH A + ++++ K LLEA AD +Q T H
Sbjct: 16 NQTDRTGETALHLAARYSRSD-----------AAKRLLEASADAXIQDNMG-RTPLHAAV 63
Query: 199 VAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF 258
A V +L + L+ + G TPL++A ++ ++N+HA V+
Sbjct: 64 SADAQGVFQILLRNRATD-----LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAV 118
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
D G+SALH AA + + ++ NG A D+ ++
Sbjct: 119 DDLGKSALHWAAAVNNVDAAV----------------VLLKNG-------ANKDMQNNKE 155
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
+TPL LAA G + K+LLD A+ D TD + P +A + ++ ++
Sbjct: 156 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+T LHLAA + K LL+ A D+ G+ P+H A + V QI LR + +
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDL 82
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELM 405
A DG T +AA G++E+L+
Sbjct: 83 DARMHDGTTPLILAARLALEGMLEDLI 109
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 29/214 (13%)
Query: 36 GPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLED-GG 94
G ++AAR D A LL++ A + + G+TP+HAA Q+LL +
Sbjct: 22 GETALHLAARYSRSD-AAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRAT 80
Query: 95 DPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQ 154
D + G TPL LA+R +++ LI + VN+V++ G SALH+A
Sbjct: 81 DLDARMHDGTTPLILAARLALEGMLEDLINSHAD---------VNAVDDLGKSALHWAAA 131
Query: 155 VTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMS 214
V +LL+ GA+ +Q + ET A G+ + +L+ +
Sbjct: 132 VNN-----------VDAAVVLLKNGANKDMQNNKE-ETPLFLAAREGSYETAKVLLDHFA 179
Query: 215 GTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
+I+ +++ P IA R H ++V +
Sbjct: 180 NRDITDHMDR------LPRDIAQERMHHDIVRLL 207
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 478 ALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
+L+ + + G TALH+AA + ++D + LL AS + G TPL
Sbjct: 13 SLHNQTDRTGETALHLAARYSRSDAAKRLLE-------------ASADAXIQDNMGRTPL 59
Query: 538 HLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
H A + + V ++LL + +DA+ +
Sbjct: 60 HAAVSADAQGVFQILLRNRATDLDARMHD 88
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
LLK+GA ++ + +TP+ AA+ G+ T ++LL+ + + + P +A
Sbjct: 141 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 200
Query: 116 AEVVDLLIQF 125
++V LL ++
Sbjct: 201 HDIVRLLDEY 210
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 21/196 (10%)
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF-------RLPPHNIIPNG------FLVH 305
D+ G +ALHLAA Y + + K L + R P H + L+
Sbjct: 19 DRTGETALHLAAR--YSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLR 76
Query: 306 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPE 365
+ A +D TPL LAA + + L++ A ++A DD G+ +H AA N +
Sbjct: 77 NRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 136
Query: 366 VAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGVISARNRVTEATP 424
A + L+ + K+ T +AA +GS + L+ F + +R+ P
Sbjct: 137 AAVVLLKNGANKDMQNNKE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL----P 191
Query: 425 LQLAAEGGHANVVRVL 440
+A E H ++VR+L
Sbjct: 192 RDIAQERMHHDIVRLL 207
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 370 FLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA 429
F+ SL T + G T H+AA + L++ I TPL A
Sbjct: 7 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDN---MGRTPLHAAV 63
Query: 430 EGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGV 488
V ++L++ A+ D G T + LAA+ +LE++ +S A LG
Sbjct: 64 SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK 123
Query: 489 TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENV 548
+ALH AA D LL GA+ ++ + TPL LAA G+
Sbjct: 124 SALHWAAAVNNVDAAVVLLK-----------NGAN--KDMQNNKEETPLFLAAREGSYET 170
Query: 549 VRLLLN 554
++LL+
Sbjct: 171 AKVLLD 176
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 435 NVVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHV 493
+V+ + GAS ++ ++TG TA+HLAA+ + + + + A +G T LH
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLH- 60
Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE--SGMTPLHLAAYSGNENVVRL 551
AA A V ++L T +L + G TPL LAA E ++
Sbjct: 61 AAVSADAQGVFQILLRNRAT-------------DLDARMHDGTTPLILAARLALEGMLED 107
Query: 552 LLNS 555
L+NS
Sbjct: 108 LINS 111
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV----- 277
N + S TPL++AC G ++ ++ N +++ D EG +AL A ++ L +
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGF-----LVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 332
S G ++ S + P I G+ + +H A ++ L +TPL +A++ G+ +
Sbjct: 89 SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
+ K LL+LGA I A D G A EV +IF
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
LL G+ N G+TP+ + +G LLE G + +N GETPL +AS+ +
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 116 AEVVDLLIQFVQNIS 130
+E+V L++ +IS
Sbjct: 147 SEIVKKLLELGADIS 161
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
+G+T A +G+ E+L+ + ++ ++ + TPL + G++ + L++
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLS--KGSNVNTKD-FSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKL-GVTALHVAAYFGQADT 502
GA+ D N G T + +A++ G +++++++ A ++ ++ L G+TA A FG+ +
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTAEASARIFGRQEV 182
Query: 503 VR 504
++
Sbjct: 183 IK 184
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+TPL +A G L++ ++ D +G + A +NN +A+ L ++
Sbjct: 36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV- 94
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKF--DRSGVISARNRVTEATPLQLAAEGGHANV 436
TKD M + E+ F + ++ RN E TPL +A++ G + +
Sbjct: 95 --NTKD--FSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE-TPLIVASKYGRSEI 149
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
V+ L++ GA + + TG TA A G +V++
Sbjct: 150 VKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 53 ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
+ LL+ GA N +G+TP+ A+KYG ++ LLE G D ++ G T A
Sbjct: 117 SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI 176
Query: 113 NCKAEVVDLLIQ 124
+ EV+ + +
Sbjct: 177 FGRQEVIKIFTE 188
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
+G T + A K L + LL G + K+ G+TPL + +E+ L++ N
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN 126
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
VN N +G + L A + ++E+ VK LLE GAD+S
Sbjct: 127 ---------VNDRNLEGETPLIVASKYGRSEI-----------VKKLLELGADIS 161
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 98 YKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTK 157
Y++ TPL +A +D L++ + + + +G++AL +A + +
Sbjct: 30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI---------EGSTALIWAVKNNR 80
Query: 158 AELIPITSKEDQKTVKLLLEAGADVSLQTKQ-NHETAFHYCAVAGNNDVLTGMLEQMSGT 216
+ I K LL G++V+ TK + +T + + G +++ +LE +
Sbjct: 81 ---LGIAEK--------LLSKGSNVN--TKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN- 126
Query: 217 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSA 265
+N + G TPL++A G E+V +L A + D G +A
Sbjct: 127 -----VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D G + LHLAA+ G+L++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ H A ++ +TPLHLAA G L++ ++LL+ GA ++A D G+
Sbjct: 65 ----------VLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Query: 353 KPIHVAAQNNFPEVAQIF 370
++ N ++A+I
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHLAA+ G L++ ++LL GA ++A+D G+ P+H+AA E+ ++ L + + V
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE-YGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
A K G T I+ G+ + E L K +
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+L+ +GA N D G TP+H AAK G+L +++LL+ G D + G TPLHLA+
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVG 91
Query: 115 KAEVVDLLIQFVQNI-SQEK 133
E+V++L+++ ++ +Q+K
Sbjct: 92 HLEIVEVLLEYGADVNAQDK 111
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
A AGQ ++L+ GA ++A DD G P+H+AA+ E+ ++ L+ H + V A+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-HGADVNASDSW 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
G T H+AA G + ++E L+++ ++A+++ + T ++ + G+ ++ +L K
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEY--GADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA+ GH +V VL+K GA + G T +HLAA GH +++E + A
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIDNGNED 127
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+N G TPL +A RGH+E+V +L + A V+ D GR+ LHLAA G+L++
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEI 95
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + EV L A+ + V A G T H+AA +G + ++E L+K
Sbjct: 13 DLGKKLLEATRAGQDDEVR--ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
++A + TPL LAA GH +V VL++ GA ++K G TA ++ NG+
Sbjct: 69 HGADVNASDSWGR-TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
+ E
Sbjct: 128 LAE 130
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 21/129 (16%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
A + G +++L+ +G D + G TPLHLA++ E+V++L++ +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-------- 72
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VN+ + G + LH A V E+ V++LLE GADV+ Q K +TAF
Sbjct: 73 -VNASDSWGRTPLHLAATVGHLEI-----------VEVLLEYGADVNAQDKFG-KTAFDI 119
Query: 197 CAVAGNNDV 205
GN D+
Sbjct: 120 SIDNGNEDL 128
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
A G + VR+L+ GA + G T +HLAA+ GH +++E + A S G
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA G + V LL + D + G T ++ +GNE+
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQD-------------KFGKTAFDISIDNGNED 127
Query: 548 VVRLL 552
+ +L
Sbjct: 128 LAEIL 132
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK GA N + G+TP+H AA G+L +++LLE G D ++K G+T ++ N
Sbjct: 65 VLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 125 NEDLAEIL 132
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+L+ T V++L+ GADV+ T H A G+ +++ +L+ G ++
Sbjct: 17 KLLEATRAGQDDEVRILMANGADVNAMDDAG-VTPLHLAAKRGHLEIVEVLLKH--GADV 73
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
N S G TPL +A GH+E+V +L A V+ D+ G++A ++ ++G
Sbjct: 74 ----NASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNG 124
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
GVT LH+AA G + V LL H SD G TPLHLAA G+
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDS-------------WGRTPLHLAATVGHL 93
Query: 547 NVVRLLLNSAGVQVDAQTQ 565
+V +LL G V+AQ +
Sbjct: 94 EIVEVLL-EYGADVNAQDK 111
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L A GQ D VR L+++ D ++
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-ATRAGQDDEVRILMANGADVNAMD-------------DA 46
Query: 533 GMTPLHLAAYSGNENVVRLLL 553
G+TPLHLAA G+ +V +LL
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLL 67
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%)
Query: 52 CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
AL LLK GA PN+ G +PVH AA+ G L TL++L+E G D + G P+HLA
Sbjct: 50 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Query: 112 RNCKAEVVDLL 122
+ VV L
Sbjct: 110 QEGHTAVVSFL 120
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 358 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 415
AA+ + EV ++ R HP A + G T + M GS + EL+K G
Sbjct: 10 AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSTAIALELLK---QGASPN 62
Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
+ +P+ AA G + ++VLV+ GA + TG +HLA Q GH V+ + +
Sbjct: 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Query: 476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
L+ + G+T L +A G D V L H+
Sbjct: 123 ESDLHRRDAR-GLTPLELALQRGAQDLVDILQGHM 156
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
+P+H AA G L K+L++ GA ++ D G PIH+A Q V FL A L
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDL 126
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388
G + LL GAS + D G P+H AA+ F + ++ + H + V G
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALP 104
Query: 389 AHIAAMQGSVGVI------EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
H+A +G V+ +L + D G+ TPL+LA + G ++V +L
Sbjct: 105 IHLAVQEGHTAVVSFLAAESDLHRRDARGL----------TPLELALQRGAQDLVDIL 152
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 96 PMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQV 155
P N+ G+T L + A ++LL Q N + G S +H A +
Sbjct: 29 PDALNRFGKTALQVMMFGSTAIALELLKQGASP----------NVQDTSGTSPVHDAART 78
Query: 156 TKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSG 215
+ T+K+L+E GADV++ H G+ V++ + +
Sbjct: 79 GFLD-----------TLKVLVEHGADVNVPDGTG-ALPIHLAVQEGHTAVVSFLAAESD- 125
Query: 216 TEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
L+++ + G TPL +A RG +LV+ +
Sbjct: 126 ------LHRRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%)
Query: 52 CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
AL LLK GA PN+ G +PVH AA+ G L TL++L+E G D + G P+HLA
Sbjct: 56 IALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115
Query: 112 RNCKAEVVDLL 122
+ VV L
Sbjct: 116 QEGHTAVVSFL 126
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 358 AAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISA 415
AA+ + EV ++ R HP A + G T + M GS + EL+K G
Sbjct: 16 AARGDVQEVRRLLHRELVHPD---ALNRFGKTALQVM-MFGSTAIALELLK---QGASPN 68
Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
+ +P+ AA G + ++VLV+ GA + TG +HLA Q GH V+ + +
Sbjct: 69 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 128
Query: 476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
L+ + G+T L +A G D V L H+
Sbjct: 129 ESDLHRRDAR-GLTPLELALQRGAQDLVDILQGHM 162
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
+P+H AA G L K+L++ GA ++ D G PIH+A Q V FL A L
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDL 132
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388
G + LL GAS + D G P+H AA+ F + ++ + H + V G
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALP 110
Query: 389 AHIAAMQGSVGVI------EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
H+A +G V+ +L + D G+ TPL+LA + G ++V +L
Sbjct: 111 IHLAVQEGHTAVVSFLAAESDLHRRDARGL----------TPLELALQRGAQDLVDIL 158
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 29/153 (18%)
Query: 96 PMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQV 155
P N+ G+T L + A ++LL Q N + G S +H A +
Sbjct: 35 PDALNRFGKTALQVMMFGSTAIALELLKQGASP----------NVQDTSGTSPVHDAART 84
Query: 156 TKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSG 215
+ T+K+L+E GADV++ H G+ V++ + +
Sbjct: 85 GFLD-----------TLKVLVEHGADVNVPDGTG-ALPIHLAVQEGHTAVVSFLAAESD- 131
Query: 216 TEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
L+++ + G TPL +A RG +LV+ +
Sbjct: 132 ------LHRRDARGLTPLELALQRGAQDLVDIL 158
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 7/176 (3%)
Query: 341 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 400
G ++ T G P+HVAA + ++ + L+ H + A D H+A QG V
Sbjct: 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQV 134
Query: 401 IEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 460
++ L+ S + ++ TPL A GGH +V +L++ GAS N G TA+H
Sbjct: 135 VKCLLD---SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHE 191
Query: 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 516
A H V+E + A K TA+ A Q + ELL VP V S
Sbjct: 192 AVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE---QNSKIMELLQVVPSCVAS 244
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 72/165 (43%), Gaps = 25/165 (15%)
Query: 255 VDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDIL 314
V+V Q+G S LH+AA HG ++IP L+ H A
Sbjct: 79 VNVTSQDGSSPLHVAALHGRA--------------------DLIP---LLLKHGANAGAR 115
Query: 315 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
+ PLHLA + G QV K LLD A + D G P+ A E+ + L+ H
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-H 174
Query: 375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS-GVISARNR 418
+ + A+ GNT H A ++ V V+E L+ S V++ R R
Sbjct: 175 GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQR 219
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
VN ++DG+S LH A +A+LIP LLL+ GA+ + + H
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIP-----------LLLKHGANAGARNA-DQAVPLHLA 126
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
G+ V+ +L+ + NK+ G TPL+ AC+ GH ELV +L + A ++
Sbjct: 127 CQQGHFQVVKCLLDSNAKP------NKKDLSGNTPLIYACSGGHHELVALLLQHGASINA 180
Query: 258 FDQEGRSALHLA 269
+ +G +ALH A
Sbjct: 181 SNNKGNTALHEA 192
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 59 SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
SG G N+T+ DG +P+H AA +G + LLL+ G + +N PLHLA + +V
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQV 134
Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
V L+ S K N + G + L YAC EL V LLL+
Sbjct: 135 VKCLLD-----SNAK----PNKKDLSGNTPLIYACSGGHHEL-----------VALLLQH 174
Query: 179 GADVSLQTKQNHETAFH 195
GA ++ + + TA H
Sbjct: 175 GASINASNNKGN-TALH 190
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 75/183 (40%), Gaps = 14/183 (7%)
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
T + D C + + L K SG+ ++PL +AA G A+++
Sbjct: 44 TVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIP 103
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG 498
+L+K GA+ N +HLA Q GH QV++ + S A G T L A G
Sbjct: 104 LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163
Query: 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR-LLLNSAG 557
+ V LL H GAS + G T LH A + VV LLL+ A
Sbjct: 164 HHELVALLLQH-----------GASI--NASNNKGNTALHEAVIEKHVFVVELLLLHGAS 210
Query: 558 VQV 560
VQV
Sbjct: 211 VQV 213
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK GA D P+H A + G+ ++ LL+ P K+ G TPL A
Sbjct: 104 LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYA 152
E+V LL+Q +I N+ N G +ALH A
Sbjct: 164 HHELVALLLQHGASI---------NASNNKGNTALHEA 192
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 105/241 (43%), Gaps = 37/241 (15%)
Query: 122 LIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGAD 181
+++++ ++E + + ++V+ H CQ K QK + + +G
Sbjct: 26 MVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKC-------APAQKRLAKVPASGLG 78
Query: 182 VSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGH 241
V++ T Q+ + H A+ G D++ +L+ + + A N ++ PL +AC +GH
Sbjct: 79 VNV-TSQDGSSPLHVAALHGRADLIPLLLKHGAN---AGARNADQAV---PLHLACQQGH 131
Query: 242 MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG 301
++V +L+++A+ + D G + L A G+ H +++ L
Sbjct: 132 FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGH----------HELVALLL--------- 172
Query: 302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
H A I+ + T LH A + V +LLL GAS+ + + + + A QN
Sbjct: 173 ----QHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN 228
Query: 362 N 362
+
Sbjct: 229 S 229
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCA-------LMLLKSGAGPN 64
PLH+A + + + LL S A PN +++ C+ +LL+ GA N
Sbjct: 121 VPLHLACQ-QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN 179
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA----EVVD 120
+ + G T +H A ++ ++LLL G NK T + A +N K +VV
Sbjct: 180 ASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVP 239
Query: 121 LLIQFVQNISQEKVLEYV 138
+ + ++++ EYV
Sbjct: 240 SCVASLDDVAETDRKEYV 257
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 19/159 (11%)
Query: 319 QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
++PL LAA+ +Q + KLL G + G+ +H+AA + E A + + A P L
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 378 V----TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISAR-----------NRVTEA 422
V T+ +G T HIA + +V ++ L+ R +SAR N +
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLA--RGASVSARATGSVFHYRPHNLIYYG 121
Query: 423 T-PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 460
PL AA G +VR+L++ GA ++ G T +H+
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 423 TPLQLAAEGGHANVVRVLVK-AGASCTDENKTGFTAVHLAAQNGHNQ---VLEEMRSSKA 478
+PL LAA+ + L+K G G TA+H+AA + + VL E
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 479 LNVYSKKL--GVTALHVAAYFGQADTVRELLSH-------VPGTVKSDPPTGASFLGELG 529
+ +L G TALH+A + VR LL+ G+V P + GE
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE-- 122
Query: 530 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
PL AA G+E +VRLL+ G + AQ
Sbjct: 123 -----HPLSFAACVGSEEIVRLLIEH-GADIRAQ 150
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 70 GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI-----GETPLHLASRNCKAEVVDLLIQ 124
G+T +H AA Y NL +L+E + +++ G+T LH+A N +V L+
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 125 FVQNISQE---KVLEYV-NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGA 180
++S V Y +++ G L +A V E+ V+LL+E GA
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI-----------VRLLIEHGA 145
Query: 181 DVSLQ 185
D+ Q
Sbjct: 146 DIRAQ 150
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 30/148 (20%)
Query: 7 GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM----------- 55
G + ET LHIAA + D A++L+++ + + + +G +
Sbjct: 34 GAMGETALHIAA-LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 56 -LLKSGAG-------------PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
LL GA P+ G+ P+ AA G+ ++LL+E G D ++
Sbjct: 93 ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152
Query: 102 IGETPLHL----ASRNCKAEVVDLLIQF 125
+G T LH+ ++ ++ +LL+ +
Sbjct: 153 LGNTVLHILILQPNKTFACQMYNLLLSY 180
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 38/169 (22%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
R+ TPLH AA ++ V + LL GA + A D G P+H A EVA++ ++
Sbjct: 45 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---- 100
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 436
G+V + +L KF TPL AA G +
Sbjct: 101 ------------------HGAVVNVADLWKF---------------TPLHEAAAKGKYEI 127
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK 485
++L++ GA T +N+ G T + L ++G + + +R AL +KK
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAALLDAAKK 175
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 25/153 (16%)
Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
TPL A + +V +L + A V D+ G LH A +G+ +V+
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE----------- 96
Query: 291 RLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 350
L+ H AV+++ L K TPLH AA G+ ++CKLLL GA +
Sbjct: 97 ------------LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD 144
Query: 351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTK 383
G P+ + + Q LR +L+ A K
Sbjct: 145 GNTPLDLVKDGDTD--IQDLLRGDAALLDAAKK 175
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 10 RETPLHIAARVKDGDRCALM--LLKSGAGPNLTNIAARVKDGDRC-------ALMLLKSG 60
+ TPLH AA +R +++ LL+ GA + + V + C A +L+K G
Sbjct: 46 QSTPLHFAAGY---NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 102
Query: 61 AGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD 120
A N+ TP+H AA G +LLL+ G DP KN+ G TPL L ++ ++ D
Sbjct: 103 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQD 161
Query: 121 LL 122
LL
Sbjct: 162 LL 163
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 23/120 (19%)
Query: 72 TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ 131
TP+H AA Y + ++ LL+ G D K+K G PLH A EV +LL++ ++
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHE 191
+ ++ + LH A K E+ KLLL+ GAD TK+N +
Sbjct: 108 ADLWKF---------TPLHEAAAKGKYEI-----------CKLLLQHGAD---PTKKNRD 144
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 17/143 (11%)
Query: 413 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV-LE 471
IS N + L+ A G V ++ +C D T +H AA G+N+V +
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRVSVV 62
Query: 472 EMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS 530
E +V++K K G+ LH A +G + L+ H G V + +
Sbjct: 63 EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVN-----------VAD 109
Query: 531 ESGMTPLHLAAYSGNENVVRLLL 553
TPLH AA G + +LLL
Sbjct: 110 LWKFTPLHEAAAKGKYEICKLLL 132
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+L+ D +TVK L + + T H+ A V+ +L+ G ++
Sbjct: 15 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADV 72
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+ + G PL AC+ GH E+ ++ + A V+V D + LH AA G ++
Sbjct: 73 ----HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA E+K G T +HLAA N H +++E + + A +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+ A +G + V LL H +D F G T ++ +GNE+
Sbjct: 81 ETPLHLVAMYGHLEIVEVLLKH-----GADVNAQDKF--------GKTAFDISIDNGNED 127
Query: 548 VVRLL 552
+ +L
Sbjct: 128 LAEIL 132
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D G+K + A EV L A+ + V A K G T H+AAM + ++E L+K
Sbjct: 13 DLGKKLLEAARAGQDDEVR--ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-- 68
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
++A + + E TPL L A GH +V VL+K GA ++K G TA ++ NG+
Sbjct: 69 NGADVNAIDAIGE-TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 469 VLE 471
+ E
Sbjct: 128 LAE 130
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D G P+H+AA N+ E+ ++ L+ + + V A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNAIDAI 79
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
G T H+ AM G + ++E L+K ++A+++ + T ++ + G+ ++ +L K
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLK--HGADVNAQDKFGK-TAFDISIDNGNEDLAEILQK 134
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPLHLAA L++ ++LL GA ++A D G+ P+H+ A E+ ++ L+ H + V
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK-HGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
A K G T I+ G+ + E L K +
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N G TP+H AA +L +++LL++G D + I
Sbjct: 21 AARAGQDDEVRI-LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 103 GETPLHLASRNCKAEVVDLLIQ 124
GETPLHL + E+V++L++
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLK 101
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+N + +G TPL +A H+E+V +L N A V+ D G + LHL A +G+L++
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEI 95
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 23/138 (16%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
LL A G + V ++ N A V+ D+ G + LHLAA + +L++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVE------------- 64
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ NG A ++ + +TPLHL A G L++ ++LL GA ++A D G+
Sbjct: 65 ---VLLKNG-------ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGK 114
Query: 353 KPIHVAAQNNFPEVAQIF 370
++ N ++A+I
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK+GA N G+TP+H A YG+L +++LL+ G D ++K G+T ++ N
Sbjct: 65 VLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 125 NEDLAEIL 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 413 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 472
++A ++V TPL LAA H +V VL+K GA + G T +HL A GH +++E
Sbjct: 40 VNAEDKVG-LTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEV 98
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQAD 501
+ A K G TA ++ G D
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIDNGNED 127
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
V++L+ GADV+ + K T H A+ + +++ +L+ +G ++ N +IG T
Sbjct: 30 VRILMANGADVNAEDKVGL-TPLHLAAMNDHLEIVEVLLK--NGADV----NAIDAIGET 82
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
PL + GH+E+V +L + A V+ D+ G++A ++ ++G
Sbjct: 83 PLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
MR S + + LG L AA GQ D VR L+++ GA E +
Sbjct: 1 MRGSHHHHHHGSDLGKKLLE-AARAGQDDEVRILMAN-----------GADVNAE--DKV 46
Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
G+TPLHLAA + + +V +LL + G V+A
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKN-GADVNA 75
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 485 KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544
K+G+T LH+AA + V LL + D G TPLHL A G
Sbjct: 45 KVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI-------------GETPLHLVAMYG 91
Query: 545 NENVVRLLLNSAGVQVDAQTQ 565
+ +V +LL G V+AQ +
Sbjct: 92 HLEIVEVLLKH-GADVNAQDK 111
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 38/163 (23%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
R+ TPLH AA ++ V + LL GA + A D G P+H A EVA++ ++
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---- 96
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 436
G+V + +L KF TPL AA G +
Sbjct: 97 ------------------HGAVVNVADLWKF---------------TPLHEAAAKGKYEI 123
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479
++L++ GA T +N+ G T + L ++G + + +R AL
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAAL 165
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 23/125 (18%)
Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
TPL A + +V +L + A V D+ G LH A +G+ +V+
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE----------- 92
Query: 291 RLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 350
L+ H AV+++ L K TPLH AA G+ ++CKLLL GA +
Sbjct: 93 ------------LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD 140
Query: 351 GQKPI 355
G P+
Sbjct: 141 GNTPL 145
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 10 RETPLHIAARVKDGDRCALM--LLKSGAGPNLTNIAARVKDGDRC-------ALMLLKSG 60
+ TPLH AA +R +++ LL+ GA + + V + C A +L+K G
Sbjct: 42 QSTPLHFAAGY---NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 98
Query: 61 AGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD 120
A N+ TP+H AA G +LLL+ G DP KN+ G TPL L ++ ++ D
Sbjct: 99 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQD 157
Query: 121 LL 122
LL
Sbjct: 158 LL 159
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 23/120 (19%)
Query: 72 TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ 131
TP+H AA Y + ++ LL+ G D K+K G PLH A EV +LL++ ++
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHE 191
+ ++ + LH A K E+ KLLL+ GAD TK+N +
Sbjct: 104 ADLWKF---------TPLHEAAAKGKYEI-----------CKLLLQHGAD---PTKKNRD 140
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 428 AAEGGHANVVRVLVKA-GASCTDENKTGFTAVHLAAQNGHNQV-LEEMRSSKALNVYSK- 484
AA+ G V+ L +C D T +H AA G+N+V + E +V++K
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRVSVVEYLLQHGADVHAKD 72
Query: 485 KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544
K G+ LH A +G + L+ H G V + + TPLH AA G
Sbjct: 73 KGGLVPLHNACSYGHYEVAELLVKH--GAVVN-----------VADLWKFTPLHEAAAKG 119
Query: 545 NENVVRLLL 553
+ +LLL
Sbjct: 120 KYEICKLLL 128
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+L+ D +TVK L + + T H+ A V+ +L+ G ++
Sbjct: 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADV 68
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+ + G PL AC+ GH E+ ++ + A V+V D + LH AA G ++
Sbjct: 69 ----HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 38/163 (23%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
R+ TPLH AA ++ V + LL GA + A D G P+H A EVA++ ++
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK---- 98
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANV 436
G+V + +L KF TPL AA G +
Sbjct: 99 ------------------HGAVVNVADLWKF---------------TPLHEAAAKGKYEI 125
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479
++L++ GA T +N+ G T + L ++G + + +R AL
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPLDL-VKDGDTDIQDLLRGDAAL 167
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 23/125 (18%)
Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
TPL A + +V +L + A V D+ G LH A +G+ +V+
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE----------- 94
Query: 291 RLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 350
L+ H AV+++ L K TPLH AA G+ ++CKLLL GA +
Sbjct: 95 ------------LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD 142
Query: 351 GQKPI 355
G P+
Sbjct: 143 GNTPL 147
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 10 RETPLHIAARVKDGDRCALM--LLKSGAGPNLTNIAARVKDGDRC-------ALMLLKSG 60
+ TPLH AA +R +++ LL+ GA + + V + C A +L+K G
Sbjct: 44 QSTPLHFAAGY---NRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHG 100
Query: 61 AGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD 120
A N+ TP+H AA G +LLL+ G DP KN+ G TPL L ++ ++ D
Sbjct: 101 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQD 159
Query: 121 LL 122
LL
Sbjct: 160 LL 161
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 23/120 (19%)
Query: 72 TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ 131
TP+H AA Y + ++ LL+ G D K+K G PLH A EV +LL++ ++
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHE 191
+ ++ + LH A K E+ KLLL+ GAD TK+N +
Sbjct: 106 ADLWKF---------TPLHEAAAKGKYEI-----------CKLLLQHGAD---PTKKNRD 142
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 17/145 (11%)
Query: 411 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV- 469
G + + N + L+ A G V ++ +C D T +H AA G+N+V
Sbjct: 1 GAMGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAA--GYNRVS 58
Query: 470 LEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGEL 528
+ E +V++K K G+ LH A +G + L+ H G V + +
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVN-----------V 105
Query: 529 GSESGMTPLHLAAYSGNENVVRLLL 553
TPLH AA G + +LLL
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLL 130
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+L+ D +TVK L + + T H+ A V+ +L+ G ++
Sbjct: 13 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADV 70
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+ + G PL AC+ GH E+ ++ + A V+V D + LH AA G ++
Sbjct: 71 ----HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 125
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 34 GAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT--TDDGQTPVHAAAKYGNLVTLQLLLE 91
G+ + +I + ++G+ A+ L +L D G +P+H A + G +++L+
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 92 DGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHY 151
G N+ +TPLHLA+ + ++V L+Q+ +I N+VNE G LHY
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI---------NAVNEHGNVPLHY 111
Query: 152 AC 153
AC
Sbjct: 112 AC 113
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
LN+ G++PL AC G +V ++ AR++V ++ + LHLAA HG+ +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH------R 85
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
+ ++ ++ A I+ + PLH A GQ QV + L+ G
Sbjct: 86 DIVQKLLQYK-----------------ADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128
Query: 342 ASIDATDDQGQKPIHVA 358
A + + G+ P+ A
Sbjct: 129 ALVSICNKYGEMPVDKA 145
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 390 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 449
H A +G V+E L+ R I+ NR + TPL LAA GH ++V+ L++ A
Sbjct: 44 HWACREGRSAVVEMLIM--RGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
N+ G +H A G +QV E++ ++ AL K G
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 138
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
+PL A G + VV +L+ GA N+ T +HLAA +GH +++++ KA
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSH 509
+ G LH A ++GQ +L+++
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVAN 127
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
+PLH A G+ V ++L+ GA I+ + P+H+AA + ++ Q L+ + + +
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADIN 99
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELM 405
A + GN H A G V E+L+
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 367
A I+++ TPLHLAA G + + LL A I+A ++ G P+H A +VA
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 368 QIFLRAHPSLVTATTKDG 385
+ + A+ +LV+ K G
Sbjct: 122 EDLV-ANGALVSICNKYG 138
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 18/110 (16%)
Query: 454 GFTAVHLAAQNGHNQVLEE--MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP 511
GF+ +H A + G + V+E MR ++ +NV ++ T LH+AA G D V++LL +
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGAR-INVMNRG-DDTPLHLAASHGHRDIVQKLLQY-- 94
Query: 512 GTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR-LLLNSAGVQV 560
K+D +E G PLH A + G + V L+ N A V +
Sbjct: 95 ---KADI--------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
+N ++ G S LH+AC+ ++ + V++L+ GA +++ + + +T H
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAV-----------VEMLIMRGARINVMNRGD-DTPLHLA 79
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
A G+ D++ +L+ + A+N+ ++ PL AC G ++ ++ N A V +
Sbjct: 80 ASHGHRDIVQKLLQYKADI---NAVNEHGNV---PLHYACFWGQDQVAEDLVANGALVSI 133
Query: 258 FDQEG 262
++ G
Sbjct: 134 CNKYG 138
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 12 TPLHIAARVKDGDRCAL--MLLKSGAGPNLTN------IAARVKDGDRCALM-LLKSGAG 62
+PLH A R +G R A+ ML+ GA N+ N + G R + LL+ A
Sbjct: 41 SPLHWACR--EG-RSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 97
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N + G P+H A +G + L+ +G NK GE P+ A KA + +LL
Sbjct: 98 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA----KAPLRELL 153
Query: 123 IQFVQNISQ 131
+ + + Q
Sbjct: 154 RERAEKMGQ 162
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 39 LTNIAARVKDGDRCALMLLKSGAGPNLT--TDDGQTPVHAAAKYGNLVTLQLLLEDGGDP 96
+ +I + ++G+ A+ L +L D G +P+H A + G +++L+ G
Sbjct: 1 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 60
Query: 97 MYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYAC 153
N+ +TPLHLA+ + ++V L+Q+ +I N+VNE G LHYAC
Sbjct: 61 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI---------NAVNEHGNVPLHYAC 108
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 390 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 449
H A +G V+E L+ R I+ NR + TPL LAA GH ++V+ L++ A
Sbjct: 39 HWACREGRSAVVEMLIM--RGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
N+ G +H A G +QV E++ ++ AL K G
Sbjct: 96 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
LN+ G++PL AC G +V ++ AR++V ++ + LHLAA HG+ +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH------R 80
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
+ ++ ++ A I+ + PLH A GQ QV + L+ G
Sbjct: 81 DIVQKLLQYK-----------------ADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 123
Query: 342 ASIDATDDQGQKPIHVA 358
A + + G+ P+ A
Sbjct: 124 ALVSICNKYGEMPVDKA 140
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
+PL A G + VV +L+ GA N+ T +HLAA +GH +++++ KA
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSH 509
+ G LH A ++GQ +L+++
Sbjct: 96 VNEHGNVPLHYACFWGQDQVAEDLVAN 122
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
+PLH A G+ V ++L+ GA I+ + P+H+AA + ++ Q L+ + + +
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADIN 94
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELM 405
A + GN H A G V E+L+
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 367
A I+++ TPLHLAA G + + LL A I+A ++ G P+H A +VA
Sbjct: 57 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 116
Query: 368 QIFLRAHPSLVTATTKDG 385
+ + A+ +LV+ K G
Sbjct: 117 EDLV-ANGALVSICNKYG 133
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 18/110 (16%)
Query: 454 GFTAVHLAAQNGHNQVLEE--MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP 511
GF+ +H A + G + V+E MR ++ +NV ++ T LH+AA G D V++LL +
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGAR-INVMNRG-DDTPLHLAASHGHRDIVQKLLQY-- 89
Query: 512 GTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR-LLLNSAGVQV 560
K+D +E G PLH A + G + V L+ N A V +
Sbjct: 90 ---KADINAV--------NEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 62/125 (49%), Gaps = 18/125 (14%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
+N ++ G S LH+AC+ ++ + V++L+ GA +++ + + +T H
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAV-----------VEMLIMRGARINVMNRGD-DTPLHLA 74
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
A G+ D++ +L+ + A+N+ ++ PL AC G ++ ++ N A V +
Sbjct: 75 ASHGHRDIVQKLLQYKADI---NAVNEHGNV---PLHYACFWGQDQVAEDLVANGALVSI 128
Query: 258 FDQEG 262
++ G
Sbjct: 129 CNKYG 133
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 12 TPLHIAARVKDGDRCAL--MLLKSGAGPNLTN------IAARVKDGDRCALM-LLKSGAG 62
+PLH A R +G R A+ ML+ GA N+ N + G R + LL+ A
Sbjct: 36 SPLHWACR--EG-RSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD 92
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N + G P+H A +G + L+ +G NK GE P+ A KA + +LL
Sbjct: 93 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA----KAPLRELL 148
Query: 123 IQFVQNISQ 131
+ + + Q
Sbjct: 149 RERAEKMGQ 157
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 23/127 (18%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
G T L IA +G + V +L N + +V D G + LH A HG+LKV
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE--------- 60
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ H A+++ + +PLH AA+ G + + KLLL GAS +A +
Sbjct: 61 --------------LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 349 DQGQKPI 355
G +P+
Sbjct: 107 IFGLRPV 113
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 20/116 (17%)
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
T G+T +H A+ G++ +++ LL++G DP K+ G TPLH A + +VV+LL+
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL- 63
Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGA 180
Q K L VN+ S LH A + ++ VKLLL GA
Sbjct: 64 ------QHKAL--VNTTGYQNDSPLHDAAKNGHVDI-----------VKLLLSYGA 100
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
T ET H ++ G+ + +L+ S N + GWTPL ACN GH+++V
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP------NVKDHAGWTPLHEACNHGHLKVV 59
Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+L + A V+ + S LH AA++G++ +
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDI 91
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 36 GPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGD 95
G L +IA+ +K LL++G+ PN+ G TP+H A +G+L ++LLL+
Sbjct: 10 GETLLHIAS-IKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 96 PMYKNKIGETPLHLASRNCKAEVVDLLIQF 125
++PLH A++N ++V LL+ +
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
R +T LH+A+ G + + LL G+ + D G P+H A + +V ++ L+ H +
Sbjct: 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKA 67
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 410
LV T ++ H AA G V +++ L+ + S
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
T L +A+ G V L++ G+ ++ G+T +H A +GH +V+E + KAL
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSH 509
+ + LH AA G D V+ LLS+
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 19/95 (20%)
Query: 478 ALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
++ ++ G T LH+A+ G +V LL + SDP + +G TPL
Sbjct: 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQN-----GSDP--------NVKDHAGWTPL 47
Query: 538 HLAAYSGNENVVRLLL------NSAGVQVDAQTQE 566
H A G+ VV LLL N+ G Q D+ +
Sbjct: 48 HEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHD 82
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 22/118 (18%)
Query: 93 GGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYA 152
G DP + N GET LH+AS V+ L+ QN S V ++ G + LH A
Sbjct: 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLL---QNGSDPNVKDHA------GWTPLHEA 50
Query: 153 CQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGML 210
C + K V+LLL+ A V+ QN ++ H A G+ D++ +L
Sbjct: 51 C-----------NHGHLKVVELLLQHKALVNTTGYQN-DSPLHDAAKNGHVDIVKLLL 96
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
N G T +H+A+ G +E + + + G T LH A G V LL H
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH- 65
Query: 511 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
+ + G ++ +PLH AA +G+ ++V+LLL
Sbjct: 66 -----------KALVNTTGYQND-SPLHDAAKNGHVDIVKLLL 96
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSI 228
++ V L +AGAD ++ K + +A H A N + ++ T++ + +
Sbjct: 179 RRLVAYLXKAGADPTIYNK-SERSALHQAAA---NRDFGXXVYXLNSTKLKGDIEELDRN 234
Query: 229 GWTPL-LIACNRGHMELVNTML----------NNHARVDVFDQEGRSALHLAAEHGYLKV 277
G T L ++A N G ++ + L + AR D +GR+ALH AA+ V
Sbjct: 235 GXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ-----V 289
Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 337
S+ +K +LV + + D +TP+ LAA+ G+++V L
Sbjct: 290 SNXPIVK-----------------YLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 338 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
+ GAS++A D +A NN + IF R P
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 88/225 (39%), Gaps = 28/225 (12%)
Query: 53 ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
A + +GA N D TP+ A + L + G DP NK + LH A+
Sbjct: 149 AKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAA 208
Query: 113 NCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQ-KT 171
N V ++ K+ + ++ +G +AL ++ DQ +
Sbjct: 209 NRD------FGXXVYXLNSTKLKGDIEELDRNGXTAL---------XIVAHNEGRDQVAS 253
Query: 172 VKLLLEAGADVSLQ-------TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNK 224
KLL+E GA V K TA HY A N ++ ++ + + +K
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNK-----DK 308
Query: 225 QTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLA 269
Q G TP+ +A G +E+V ++ A V+ D +A LA
Sbjct: 309 QDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLA 353
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 75/188 (39%), Gaps = 10/188 (5%)
Query: 387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVT-----EATPLQLAAEGGHANVVRVLV 441
T H A S E+L+ + I+A V E TPL LA +V L
Sbjct: 127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLX 186
Query: 442 KAGASCTDENKTGFTAVHLAAQN-GHNQVLEEMRSSKALNVYSK--KLGVTALHVAAYFG 498
KAGA T NK+ +A+H AA N + + S+K + + G TAL + A+
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNE 246
Query: 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558
D V V K D A E G T LH AA N +V+ L+ G
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSE--KYKGRTALHYAAQVSNXPIVKYLVGEKGS 304
Query: 559 QVDAQTQE 566
D Q ++
Sbjct: 305 NKDKQDED 312
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G T H AA + +++ L+ G + TP+ LAA+ G VV L++ G
Sbjct: 279 GRTALHYAAQVSNXPIVKYLV--GEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQG 336
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
AS + T TA LA N H+ +++
Sbjct: 337 ASVEAVDATDHTARQLAQANNHHNIVD 363
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%)
Query: 330 QLQVCKLLLDLGASID----ATDD----QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
Q+ KLL++ GA +D A D +G+ +H AAQ + + + + S
Sbjct: 250 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQ 309
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
+DG T +AA +G + V+ L++ G T+ T QLA H N+V +
Sbjct: 310 DEDGKTPIXLAAQEGRIEVVXYLIQ---QGASVEAVDATDHTARQLAQANNHHNIVDIF 365
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 43/101 (42%)
Query: 22 DGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYG 81
D D A + G + AA+V + ++ + G+ + +DG+TP+ AA+ G
Sbjct: 265 DYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEG 324
Query: 82 NLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
+ + L++ G + T LA N +VD+
Sbjct: 325 RIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPL+LA G L++ ++LL GA ++A D G P+H+AA E+A++ L+ H + V
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK-HGADVN 107
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
A K G T I+ G+ + E L K +
Sbjct: 108 AQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA +++ G T ++LA +GH +++E + + A +G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
T LH+AA+ G + LL H D + G T ++ +GNE+
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQD-------------KFGKTAFDISIGNGNED 127
Query: 548 VVRLL 552
+ +L
Sbjct: 128 LAEIL 132
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
+N + G TPL +A GH+E+V +L N A V+ D G + LHLAA G+L+++
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAE 97
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 39/79 (49%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LA GH +V VL+K GA + GFT +HLAA GH ++ E + A
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108
Query: 483 SKKLGVTALHVAAYFGQAD 501
K G TA ++ G D
Sbjct: 109 QDKFGKTAFDISIGNGNED 127
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N + G TP++ A +G+L +++LL++G D + I
Sbjct: 21 AARAGQDDEVRI-LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI 79
Query: 103 GETPLHLASRNCKAEVVDLLIQ 124
G TPLHLA+ E+ ++L++
Sbjct: 80 GFTPLHLAAFIGHLEIAEVLLK 101
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 37/147 (25%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D+ G P+++A + E+ ++ L+
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK------------ 68
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
A + A+ ++G TPL LAA GH + VL+K G
Sbjct: 69 --NGADVNAVD-AIGF----------------------TPLHLAAFIGHLEIAEVLLKHG 103
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLE 471
A ++K G TA ++ NG+ + E
Sbjct: 104 ADVNAQDKFGKTAFDISIGNGNEDLAE 130
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LLK+GA N G TP+H AA G+L ++LL+ G D ++K G+T ++ N
Sbjct: 65 VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 125 NEDLAEIL 132
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 58/103 (56%), Gaps = 9/103 (8%)
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVA-GNNDVLTGMLEQMSGTEISKALNKQTSIGW 230
V++L+ GADV+ K + Y A A G+ +++ +L+ +G ++ N +IG+
Sbjct: 30 VRILMANGADVN--AKDEYGLTPLYLATAHGHLEIVEVLLK--NGADV----NAVDAIGF 81
Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
TPL +A GH+E+ +L + A V+ D+ G++A ++ +G
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
N T ++G TP+ AA +G + ++ LL++G DP K E+ L LA ++V +L+
Sbjct: 30 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 89
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
+ VN + +G + L YA K VK+LLE+GAD +
Sbjct: 90 DCGVD---------VNEYDWNGGTPLLYAVHGNHV-----------KCVKMLLESGADPT 129
Query: 184 LQTKQNHET 192
++T + +
Sbjct: 130 IETDSGYNS 138
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
I+ TD++G P+ AA + V + L+ A P L+ K + +A +G ++
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIV 85
Query: 402 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
+ L+ GV TPL A G H V++L+++GA T E +G+ ++ LA
Sbjct: 86 KMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 142
Query: 462 AQNGHNQVLEEMRS 475
G+ V + + S
Sbjct: 143 VALGYRSVQQVIES 156
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
+G M + T + ++ D+EG + L AA HG + +V+ F ++
Sbjct: 13 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQI----------AVVEF------LL 56
Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
NG A +L +++ L LA G + K+LLD G ++ D G P+ A
Sbjct: 57 QNG-------ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 109
Query: 359 AQNNFPEVAQIFLR--AHPSLVT 379
N + ++ L A P++ T
Sbjct: 110 VHGNHVKCVKMLLESGADPTIET 132
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 23/162 (14%)
Query: 209 MLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHL 268
ML + E +N G+TPL+ A G + +V +L N A + + SAL L
Sbjct: 16 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL 75
Query: 269 AAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEA 328
A GY + ++ D ++ TPL A
Sbjct: 76 ACSKGYTDIVK-----------------------MLLDCGVDVNEYDWNGGTPLLYAVHG 112
Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
++ K+LL+ GA D G + +A + V Q+
Sbjct: 113 NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 29 MLLKSGAGPNLTNIAARVKDGDRCAL-------MLLKSGAGPNLTTDDGQTPVHAAAKYG 81
LL++GA P L C+ MLL G N +G TP+ A
Sbjct: 54 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 113
Query: 82 NLVTLQLLLEDGGDPMYKNKIGETPLHLA----SRNCKAEVVDLLIQFVQNISQ 131
++ +++LLE G DP + G + LA R+ + + L++ +QNI +
Sbjct: 114 HVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 60/204 (29%)
Query: 74 VHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEK 133
VH A G ++ L +E + ++ G TPL A+ + + VV+ L+ QN + +
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL---QNGADPQ 63
Query: 134 VLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETA 193
+L + SAL AC SK VK+LL+ G DV
Sbjct: 64 LL------GKGRESALSLAC-----------SKGYTDIVKMLLDCGVDV----------- 95
Query: 194 FHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHA 253
N+ G TPLL A + H++ V +L + A
Sbjct: 96 -----------------------------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Query: 254 RVDVFDQEGRSALHLAAEHGYLKV 277
+ G +++ LA GY V
Sbjct: 127 DPTIETDSGYNSMDLAVALGYRSV 150
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
N T ++G TP+ AA +G + ++ LL++G DP K E+ L LA ++V +L+
Sbjct: 28 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 87
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
+ VN + +G + L YA K VK+LLE+GAD +
Sbjct: 88 DCGVD---------VNEYDWNGGTPLLYAVHGNHV-----------KCVKMLLESGADPT 127
Query: 184 LQTKQNHET 192
++T + +
Sbjct: 128 IETDSGYNS 136
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
I+ TD++G P+ AA + V + L+ A P L+ K + +A +G ++
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIV 83
Query: 402 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
+ L+ GV TPL A G H V++L+++GA T E +G+ ++ LA
Sbjct: 84 KMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 140
Query: 462 AQNGHNQVLEEMRS 475
G+ V + + S
Sbjct: 141 VALGYRSVQQVIES 154
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
+G M + T + ++ D+EG + L AA HG + +V+ F ++
Sbjct: 11 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQI----------AVVEF------LL 54
Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
NG A +L +++ L LA G + K+LLD G ++ D G P+ A
Sbjct: 55 QNG-------ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 107
Query: 359 AQNNFPEVAQIFLR--AHPSLVT 379
N + ++ L A P++ T
Sbjct: 108 VHGNHVKCVKMLLESGADPTIET 130
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 23/162 (14%)
Query: 209 MLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHL 268
ML + E +N G+TPL+ A G + +V +L N A + + SAL L
Sbjct: 14 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL 73
Query: 269 AAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEA 328
A GY + ++ D ++ TPL A
Sbjct: 74 ACSKGYTDIVK-----------------------MLLDCGVDVNEYDWNGGTPLLYAVHG 110
Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
++ K+LL+ GA D G + +A + V Q+
Sbjct: 111 NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 152
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 29 MLLKSGAGPNLTNIAARVKDGDRCAL-------MLLKSGAGPNLTTDDGQTPVHAAAKYG 81
LL++GA P L C+ MLL G N +G TP+ A
Sbjct: 52 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 111
Query: 82 NLVTLQLLLEDGGDPMYKNKIGETPLHLA----SRNCKAEVVDLLIQFVQN 128
++ +++LLE G DP + G + LA R+ + + L++ +QN
Sbjct: 112 HVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQN 162
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 60/204 (29%)
Query: 74 VHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEK 133
VH A G ++ L +E + ++ G TPL A+ + + VV+ L+ QN + +
Sbjct: 5 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL---QNGADPQ 61
Query: 134 VLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETA 193
+L + SAL AC SK VK+LL+ G DV
Sbjct: 62 LL------GKGRESALSLAC-----------SKGYTDIVKMLLDCGVDV----------- 93
Query: 194 FHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHA 253
N+ G TPLL A + H++ V +L + A
Sbjct: 94 -----------------------------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Query: 254 RVDVFDQEGRSALHLAAEHGYLKV 277
+ G +++ LA GY V
Sbjct: 125 DPTIETDSGYNSMDLAVALGYRSV 148
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
N T ++G TP+ AA +G + ++ LL++G DP K E+ L LA ++V +L+
Sbjct: 46 NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 105
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
+ VN + +G + L YA K VK+LLE+GAD +
Sbjct: 106 DCGVD---------VNEYDWNGGTPLLYAVHGNHV-----------KCVKMLLESGADPT 145
Query: 184 LQTKQNHET 192
++T + +
Sbjct: 146 IETDSGYNS 154
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
I+ TD++G P+ AA + V + L+ A P L+ K + +A +G ++
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG---KGRESALSLACSKGYTDIV 101
Query: 402 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
+ L+ GV TPL A G H V++L+++GA T E +G+ ++ LA
Sbjct: 102 KMLLD---CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLA 158
Query: 462 AQNGHNQVLEEMRS 475
G+ V + + S
Sbjct: 159 VALGYRSVQQVIES 172
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 25/143 (17%)
Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
+G M + T + ++ D+EG + L AA HG + +V+ F ++
Sbjct: 29 QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQI----------AVVEF------LL 72
Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
NG A +L +++ L LA G + K+LLD G ++ D G P+ A
Sbjct: 73 QNG-------ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 125
Query: 359 AQNNFPEVAQIFLR--AHPSLVT 379
N + ++ L A P++ T
Sbjct: 126 VHGNHVKCVKMLLESGADPTIET 148
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 23/162 (14%)
Query: 209 MLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHL 268
ML + E +N G+TPL+ A G + +V +L N A + + SAL L
Sbjct: 32 MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSL 91
Query: 269 AAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEA 328
A GY + ++ D ++ TPL A
Sbjct: 92 ACSKGYTDIVK-----------------------MLLDCGVDVNEYDWNGGTPLLYAVHG 128
Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
++ K+LL+ GA D G + +A + V Q+
Sbjct: 129 NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 170
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 29 MLLKSGAGPNLTNIAARVKDGDRCAL-------MLLKSGAGPNLTTDDGQTPVHAAAKYG 81
LL++GA P L C+ MLL G N +G TP+ A
Sbjct: 70 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 129
Query: 82 NLVTLQLLLEDGGDPMYKNKIGETPLHLA----SRNCKAEVVDLLIQFVQNISQ 131
++ +++LLE G DP + G + LA R+ + + L++ +QNI +
Sbjct: 130 HVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 183
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 60/204 (29%)
Query: 74 VHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEK 133
VH A G ++ L +E + ++ G TPL A+ + + VV+ L+ QN + +
Sbjct: 23 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL---QNGADPQ 79
Query: 134 VLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETA 193
+L + SAL AC SK VK+LL+ G DV
Sbjct: 80 LL------GKGRESALSLAC-----------SKGYTDIVKMLLDCGVDV----------- 111
Query: 194 FHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHA 253
N+ G TPLL A + H++ V +L + A
Sbjct: 112 -----------------------------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Query: 254 RVDVFDQEGRSALHLAAEHGYLKV 277
+ G +++ LA GY V
Sbjct: 143 DPTIETDSGYNSMDLAVALGYRSV 166
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+T LHLAA + K LLD GA ++ D+ G+ P+H A + V QI LR + +
Sbjct: 52 ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNL 111
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
A DG T +AA G++E+L+ D + + +A N + T L AA + V
Sbjct: 112 NARMHDGTTPLILAARLAIEGMVEDLITAD-ADINAADN--SGKTALHWAAAVNNTEAVN 168
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNG 465
+L+ A+ ++ T + LAA+ G
Sbjct: 169 ILLMHHANRDAQDDKDETPLFLAAREG 195
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 29/198 (14%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPM-YKNKIGETPLHLASRNC 114
LL +GA N + G+TP+HAA + Q+LL + + + G TPL LA+R
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
+V+ LI +I N+ + G +ALH+A V E V +
Sbjct: 130 IEGMVEDLITADADI---------NAADNSGKTALHWAAAVNNTE-----------AVNI 169
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
LL A+ Q ++ ET A G+ + +L+ + EI+ +++ P
Sbjct: 170 LLMHHANRDAQDDKD-ETPLFLAAREGSYEASKALLDNFANREITDHMDR------LPRD 222
Query: 235 IACNRGHMELVNTMLNNH 252
+A R H ++V +L+ H
Sbjct: 223 VASERLHHDIVR-LLDEH 239
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 29/196 (14%)
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
LL+AGAD + Q T H A V +L + LN + G TPL+
Sbjct: 70 LLDAGADANSQDNTG-RTPLHAAVAADAMGVFQILLRNRATN-----LNARMHDGTTPLI 123
Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPP 294
+A +V ++ A ++ D G++ALH AA V++ +++ +M
Sbjct: 124 LAARLAIEGMVEDLITADADINAADNSGKTALHWAA-----AVNNTEAVNILLM------ 172
Query: 295 HNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 354
H A D + +TPL LAA G + K LLD A+ + TD + P
Sbjct: 173 ------------HHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLP 220
Query: 355 IHVAAQNNFPEVAQIF 370
VA++ ++ ++
Sbjct: 221 RDVASERLHHDIVRLL 236
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 27/217 (12%)
Query: 56 LLKSGAGPNLTTDD-GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL GA N T D G+T +H AA++ + LL+ G D ++ G TPLH A
Sbjct: 36 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA---V 92
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
A+ + + ++N + +N+ DG + L A ++ + V+
Sbjct: 93 AADAMGVFQILLRNRATN-----LNARMHDGTTPLILAARLAI-----------EGMVED 136
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
L+ A AD++ + +TA H+ A N + + +L + + Q TPL
Sbjct: 137 LITADADIN-AADNSGKTALHWAAAVNNTEAVNILLMHHANRD------AQDDKDETPLF 189
Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAE 271
+A G E +L+N A ++ D R +A+E
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASE 226
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFG 498
L+ AGA ++ TG T +H A V + + ++A N+ ++ G T L +AA
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
V +L++ +D A+ SG T LH AA N V +LL
Sbjct: 130 IEGMVEDLIT-------ADADINAA------DNSGKTALHWAAAVNNTEAVNILL 171
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 53 ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
A LL GA P+L G +H AA+ G L TLQ LLE+ D ++ G PLHLA++
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAK 112
Query: 113 NCKAEVVDLLIQ 124
VV+ L++
Sbjct: 113 EGHLRVVEFLVK 124
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
+H AA AG L + LL+ A ++ D++G P+H+AA+ V + ++ S V
Sbjct: 74 IHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSG 411
G+T +A + G V+ LM+ + +G
Sbjct: 134 NHKGDTACDLARLYGRNEVV-SLMQANGAG 162
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388
G ++ + LL GA+ D D G IH AA+ F + Q L V +GN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD-VNIEDNEGNLP 106
Query: 389 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
H+AA +G + V+E L+K S V RN + T LA G VV ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGD-TACDLARLYGRNEVVSLMQANGA 161
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
G+ + A G ++ + T+L N A V++ D EG LHLAA+ G+L+V
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRV 118
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 491
G+ + R L+ GA+ +++TGF +H AA+ G L+ + ++A G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 492 HVAAYFGQADTVRELLSHVPGTV 514
H+AA G V L+ H V
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 53 ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
A LL GA P+L G +H AA+ G L TLQ LLE D ++ G PLHLA++
Sbjct: 53 ARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 113 NCKAEVVDLLIQ 124
VV+ L++
Sbjct: 113 EGHLRVVEFLVK 124
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
+H AA AG L + LL+ A ++ D++G P+H+AA+ V + ++ S V
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSG 411
G+T +A + G V+ LM+ + +G
Sbjct: 134 NHKGDTACDLARLYGRNEVV-SLMQANGAG 162
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388
G ++ + LL GA+ D D G IH AA+ F + Q L V +GN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLP 106
Query: 389 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
H+AA +G + V+E L+K S V RN + T LA G VV ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGD-TACDLARLYGRNEVVSLMQANGA 161
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 236 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
A G ++ + T+L A V++ D EG LHLAA+ G+L+V
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 240 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIP 299
G+ E+ +L A D+ D+ G + +H AA G+L +++ F+
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTL------QTLLEFQ-------- 93
Query: 300 NGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 343
A ++I PLHLAA+ G L+V + L+ AS
Sbjct: 94 ---------ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 491
G+ + R L+ GA+ +++TG +H AA+ G L+ + +A G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 492 HVAAYFGQADTVRELLSHVPGTV 514
H+AA G V L+ H V
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 53 ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
A LL GA P+L G +H AA+ G L TLQ LLE D ++ G PLHLA++
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 113 NCKAEVVDLLIQ 124
VV+ L++
Sbjct: 113 EGHLRVVEFLVK 124
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
+H AA AGQL + LL+ A ++ D++G P+H+AA+ V + ++ S V
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSG 411
G+T +A + G V+ LM+ + +G
Sbjct: 134 NHKGDTACDLARLYGRNEVV-SLMQANGAG 162
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
G+ + A G ++ + T+L A V++ D EG LHLAA+ G+L+V
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388
G ++ + LL GA+ D D G IH AA+ + Q L V +GN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD-VNIEDNEGNLP 106
Query: 389 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
H+AA +G + V+E L+K S V RN + T LA G VV ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGD-TACDLARLYGRNEVVSLMQANGA 161
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 491
G+ + R L+ GA+ +++TGF +H AA+ G L+ + +A G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 492 HVAAYFGQADTVRELLSHVPGTV 514
H+AA G V L+ H V
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNV 130
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 409 RSGVISARNRVTEA-----TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 463
R+G+I + N V E PL AA+ G+ + +R + +K G TA++ A
Sbjct: 57 RTGLIPS-NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115
Query: 464 NGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLS 508
GH ++E + + + + + KLG TALH AA+ G AD V+ LL+
Sbjct: 116 GGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 297 IIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIH 356
+IP+ + V + A ID PLH AA+ G L + LD ++ D G ++
Sbjct: 60 LIPSNY-VAEQAESID-------NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALY 111
Query: 357 VAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM 405
A ++ + + K G+T H AA +G +++ L+
Sbjct: 112 WACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 26/152 (17%)
Query: 73 PVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ-NISQ 131
P+H AAK GNL L+ L++ +K G T L+ A ++V+ L F Q NI
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXL--FTQPNIE- 132
Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHE 191
+N N+ G +ALH A A++ V+LLL GA L+ + +
Sbjct: 133 ------LNQQNKLGDTALHAAAWKGYADI-----------VQLLLAKGARTDLRNIE-KK 174
Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALN 223
AF N +L++ GT+ + L+
Sbjct: 175 LAFD----XATNAACASLLKKKQGTDAVRTLS 202
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 458 VHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSD 517
+H AA+ G+ L E ++ K G TAL+ A + G D V L +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ-------- 128
Query: 518 PPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
P + +LG T LH AA+ G ++V+LLL + G + D + E
Sbjct: 129 PNIELNQQNKLGD----TALHAAAWKGYADIVQLLL-AKGARTDLRNIE 172
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
TA ++ G+ D++ + T+ + LN+Q +G T L A +G+ ++V +L
Sbjct: 108 TALYWACHGGHKDIVEXLF-----TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 252 HARVDVFDQEGRSALHLA 269
AR D+ + E + A A
Sbjct: 163 GARTDLRNIEKKLAFDXA 180
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 194 FHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN-H 252
H A GN L L+ G +N G T L AC+ GH ++V + +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVG------VNGLDKAGSTALYWACHGGHKDIVEXLFTQPN 130
Query: 253 ARVDVFDQEGRSALHLAAEHGYLKV 277
++ ++ G +ALH AA GY +
Sbjct: 131 IELNQQNKLGDTALHAAAWKGYADI 155
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 53 ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
A LL GA P+L G +H AA+ G L TLQ LLE D ++ G PLHLA++
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 113 NCKAEVVDLLIQ 124
VV+ L++
Sbjct: 113 EGHLRVVEFLVK 124
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
+H AA AG L + LL+ A ++ D++G P+H+AA+ V + ++ S V
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSG 411
G+T +A + G V+ LM+ + +G
Sbjct: 134 NHKGDTACDLARLYGRNEVV-SLMQANGAG 162
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388
G ++ + LL GA+ D D G IH AA+ F + Q L V +GN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLP 106
Query: 389 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
H+AA +G + V+E L+K S V RN + T LA G VV ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGD-TACDLARLYGRNEVVSLMQANGA 161
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
G+ + A G ++ + T+L A V++ D EG LHLAA+ G+L+V
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 491
G+ + R L+ GA+ +++TGF +H AA+ G L+ + +A G L
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 492 HVAAYFGQADTVRELLSHVPGTV 514
H+AA G V L+ H V
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNV 130
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 240 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIP 299
G+ E+ +L A D+ D+ G + +H AA G+L +++ F+
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL------QTLLEFQ-------- 93
Query: 300 NGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 343
A ++I PLHLAA+ G L+V + L+ AS
Sbjct: 94 ---------ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 47/243 (19%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
VN + D S LH AC VK+LL+ GA V+ T H F+ C
Sbjct: 29 VNIITADHVSPLHEACLGGHL-----------SCVKILLKHGAQVNGVTADWHTPLFNAC 77
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
V+G+ D + +L+ + + L +P+ A RGH+E VN+++ +D
Sbjct: 78 -VSGSWDCVNLLLQHGASVQPESDLA-------SPIHEAARRGHVECVNSLIAYGGNIDH 129
Query: 258 FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLR 317
+ L+LA E+ R ++ +G V+
Sbjct: 130 KISHLGTPLYLACENQQ----------------RACVKKLLESGADVNQGKG-------- 165
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH--P 375
+ +PLH A ++ LL+D GA A + +G++P+ + + +AQ+FL P
Sbjct: 166 QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPP 223
Query: 376 SLV 378
SL+
Sbjct: 224 SLM 226
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 23/174 (13%)
Query: 52 CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
C +LLK GA N T D TP+ A G+ + LLL+ G ++ + +P+H A+
Sbjct: 51 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAA 109
Query: 112 RNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKT 171
R E V+ LI + NI + ++ G + L+ AC+ + +
Sbjct: 110 RRGHVECVNSLIAYGGNIDHK--------ISHLG-TPLYLACE-----------NQQRAC 149
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQ 225
VK LLE+GADV+ Q ++ H A + ++ +++ + T+ A K+
Sbjct: 150 VKKLLESGADVNQGKGQ--DSPLHAVARTASEELACLLMDFGADTQAKNAEGKR 201
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
+ +P+H AA G + L+ G +++ P+H A +I L+ H
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HG 59
Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435
+ V T D +T A + GS + L++ S + A+P+ AA GH
Sbjct: 60 AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG----ASVQPESDLASPIHEAARRGHVE 115
Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
V L+ G + + T ++LA +N ++++ S A
Sbjct: 116 CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 158
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 24/137 (17%)
Query: 230 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
W+P+ A GH + +++ V++ + S LH A G+L
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK---------- 53
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
++ H A ++ +T TPL A +G LLL GAS+ D
Sbjct: 54 -------------ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 100
Query: 350 QGQKPIHVAAQNNFPEV 366
PIH AA+ E
Sbjct: 101 LA-SPIHEAARRGHVEC 116
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 52 CALMLLKSGAGPNLTTDDGQ-TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHL 109
C LL+SGA ++ GQ +P+HA A+ + LL++ G D KN G+ P+ L
Sbjct: 149 CVKKLLESGA--DVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
+PL A GGH + V++L+K GA T + A +G + + A +V
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA-SVQ 96
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
+ + +H AA G + V L+++ G + S LG TPL+LA
Sbjct: 97 PESDLASPIHEAARRGHVECVNSLIAY-GGNIDHK----ISHLG--------TPLYLACE 143
Query: 543 SGNENVVRLLLNS 555
+ V+ LL S
Sbjct: 144 NQQRACVKKLLES 156
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%)
Query: 53 ALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
A LL GA P+L G +H AA+ G L TLQ LLE D ++ G PLHLA++
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112
Query: 113 NCKAEVVDLLIQ 124
VV+ L++
Sbjct: 113 EGHLRVVEFLVK 124
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
+H AA AG L + LL+ A ++ D++G P+H+AA+ V + ++ S V
Sbjct: 74 IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSG 411
G+T +A + G V+ LM+ + +G
Sbjct: 134 NHKGDTACDLARLYGRNEVV-SLMQANGAG 162
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 329 GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388
G ++ + LL GA+ D D G IH AA+ F + Q L V +GN
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLP 106
Query: 389 AHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
H+AA +G + V+E L+K S V RN + T LA G VV ++ GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV-GHRNHKGD-TACDLARLYGRNEVVSLMQANGA 161
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
G+ + A G ++ + T+L A V++ D EG LHLAA+ G+L+V
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTA 490
G+ + R L+ GA+ +++TGF +H AA+ G L+ + +A +N+ + G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE-GNLP 106
Query: 491 LHVAAYFGQADTVRELLSHVPGTV 514
LH+AA G V L+ H V
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNV 130
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 240 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIP 299
G+ E+ +L A D+ D+ G + +H AA G+L +++ F+
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL------QTLLEFQ-------- 93
Query: 300 NGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 343
A ++I PLHLAA+ G L+V + L+ AS
Sbjct: 94 ---------ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 45/235 (19%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
VN + D S LH AC VK+LL+ GA V+ T H F+ C
Sbjct: 85 VNIITADHVSPLHEACLGGHL-----------SCVKILLKHGAQVNGVTADWHTPLFNAC 133
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
V+G+ D + +L+ + + L +P+ A RGH+E VN+++ +D
Sbjct: 134 -VSGSWDCVNLLLQHGASVQPESDLA-------SPIHEAARRGHVECVNSLIAYGGNIDH 185
Query: 258 FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLR 317
+ L+LA E+ R ++ +G V+
Sbjct: 186 KISHLGTPLYLACEN----------------QQRACVKKLLESGADVNQGKG-------- 221
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
+ +PLH ++ LL+D GA A + +G++P+ + + +AQ+FL
Sbjct: 222 QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLE 274
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 30/183 (16%)
Query: 264 SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLH 323
S +H AA HG+ +S R N+I G+ ++I+T +PLH
Sbjct: 61 SPMHEAAIHGH------------QLSLR----NLISQGW-------AVNIITADHVSPLH 97
Query: 324 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTK 383
A G L K+LL GA ++ P+ A + + + L+ S+ +
Sbjct: 98 EACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-- 155
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTE-ATPLQLAAEGGHANVVRVLVK 442
D + H AA +G V + L+ + G I ++++ TPL LA E V+ L++
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAY--GGNID--HKISHLGTPLYLACENQQRACVKKLLE 211
Query: 443 AGA 445
+GA
Sbjct: 212 SGA 214
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
L+ G N+ T D +P+H A G+L +++LL+ G TPL A +
Sbjct: 78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 137
Query: 116 AEVVDLLIQFVQNISQEKVL-------------EYVNSVNEDGASALHYACQVTKAELIP 162
+ V+LL+Q ++ E L E VNS+ G + H + L
Sbjct: 138 WDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYL 196
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQN 189
+ + VK LLE+GADV+ Q+
Sbjct: 197 ACENQQRACVKKLLESGADVNQGKGQD 223
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 5/159 (3%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
+P+H AA G + L+ G +++ P+H A +I L+ H + V
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVN 119
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
T D +T A + GS + L++ S + A+P+ AA GH V
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHG----ASVQPESDLASPIHEAARRGHVECVNS 175
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
L+ G + + T ++LA +N ++++ S A
Sbjct: 176 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA 214
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 26 CALMLLKSGAGPNLTN-------IAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAA 78
C +LLK GA N A V C +LL+ GA +D +P+H AA
Sbjct: 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-SPIHEAA 165
Query: 79 KYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEK 133
+ G++ + L+ GG+ +K TPL+LA N + V L++ +++Q K
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 220
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 24/137 (17%)
Query: 230 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
W+P+ A GH + +++ V++ + S LH A G+L
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK---------- 109
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
++ H A ++ +T TPL A +G LLL GAS+ D
Sbjct: 110 -------------ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 156
Query: 350 QGQKPIHVAAQNNFPEV 366
PIH AA+ E
Sbjct: 157 LA-SPIHEAARRGHVEC 172
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 14/134 (10%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
+PL A GGH + V++L+K GA T + A +G + + A +V
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA-SVQ 152
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
+ + +H AA G + V L+++ G + S LG TPL+LA
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIAYG-GNIDHK----ISHLG--------TPLYLACE 199
Query: 543 SGNENVVRLLLNSA 556
+ V+ LL S
Sbjct: 200 NQQRACVKKLLESG 213
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 52 CALMLLKSGAGPNLTTDDGQ-TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHL 109
C LL+SGA ++ GQ +P+HA + + LL++ G D KN G+ P+ L
Sbjct: 205 CVKKLLESGA--DVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
TPLHLAA G L+V KLLL+ GA ++A D G+ ++ N ++A+I
Sbjct: 41 TPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA ++K G T +HLAA+NGH +V++ + + A K G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 488 VTALHVAAYFGQAD 501
TA ++ G D
Sbjct: 73 KTAFDISIDNGNED 86
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
+TPL LAA GH VV++L++AGA ++K G TA ++ NG+ + E
Sbjct: 40 STPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAE 89
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
AA+ G +++L+ +G D K+K G TPLHLA+RN EVV LL++
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 60
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA +G TP+H AA+ G+L ++LLLE G D ++K
Sbjct: 13 AARAGQDDEVRI-LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKF 71
Query: 103 GETPLHLASRNCKAEVVDLL 122
G+T ++ N ++ ++L
Sbjct: 72 GKTAFDISIDNGNEDLAEIL 91
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA + A D G P+H+AA+N EV ++ L A V A K
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDKF 71
Query: 385 GNTCAHIAAMQGSVGVIEEL 404
G T I+ G+ + E L
Sbjct: 72 GKTAFDISIDNGNEDLAEIL 91
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 14/72 (19%)
Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
AA GQ D VR L+++ D ++G TPLHLAA +G+ VV+LLL
Sbjct: 13 AARAGQDDEVRILMANGADVAAKD-------------KNGSTPLHLAARNGHLEVVKLLL 59
Query: 554 NSAGVQVDAQTQ 565
AG V+AQ +
Sbjct: 60 -EAGADVNAQDK 70
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
G TPL +A GH+E+V +L A V+ D+ G++A ++ ++G
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNG 83
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
V + +++G++ LH A + E+ VKLLLEAGADV+ Q K +TAF
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEV-----------VKLLLEAGADVNAQDKFG-KTAFDIS 79
Query: 198 AVAGNNDV 205
GN D+
Sbjct: 80 IDNGNEDL 87
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
LL A G + V ++ N A V D+ G + LHLAA +G+L+V
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEV 54
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
L+ + G TPL++A ++ ++N+HA V+ D G+SALH AA + +
Sbjct: 8 LDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV- 66
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
++ NG A D+ +++TPL LAA G + K+LLD
Sbjct: 67 ---------------LLKNG-------ANKDMQNNKEETPLFLAAREGSYETAKVLLDHF 104
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
A+ D TD + P +A + ++ ++
Sbjct: 105 ANRDITDHMDRLPRDIAQERMHHDIVRLL 133
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
LLK+GA ++ + +TP+ AA+ G+ T ++LL+ + + + P +A
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 126
Query: 116 AEVVDLL 122
++V LL
Sbjct: 127 HDIVRLL 133
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
TPL LAA + + L++ A ++A DD G+ +H AA N + A + L+ +
Sbjct: 17 TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 76
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
K+ T +AA +GS + L+ F + +R+ P +A E H ++VR
Sbjct: 77 QNNKE-ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRL----PRDIAQERMHHDIVR 131
Query: 439 VL 440
+L
Sbjct: 132 LL 133
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 27/146 (18%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G TPL LA+R +++ LI + VN+V++ G SALH+A V
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHAD---------VNAVDDLGKSALHWAAAVNN----- 60
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
+LL+ GA+ +Q + ET A G+ + +L+ + +I+ +
Sbjct: 61 ------VDAAVVLLKNGANKDMQNNKE-ETPLFLAAREGSYETAKVLLDHFANRDITDHM 113
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTM 248
++ P IA R H ++V +
Sbjct: 114 DR------LPRDIAQERMHHDIVRLL 133
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP-IHVAAQN 361
++ D +D + TPL++A +++ K L+D GA I+ + P ++ AQ
Sbjct: 24 ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83
Query: 362 NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN---- 417
+A + A P L GN AA +G + ++ L++ R + +
Sbjct: 84 RTEILAYMLKHATPDLNKHNRYGGNALIP-AAEKGHIDNVKLLLEDGREDIDFQNDFGYT 142
Query: 418 RVTEATPLQLAAEGG--HANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV 469
+ EA L+ EG + ++V++L++ GA + ++ +G TA+ A Q G+ ++
Sbjct: 143 ALIEAVGLR---EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 22/178 (12%)
Query: 332 QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 391
+V ++L D +D D +G P+++A NN E+A+ + + + + +
Sbjct: 20 KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLY- 78
Query: 392 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD-E 450
A QG ++ ++K + ++ NR L AAE GH + V++L++ G D +
Sbjct: 79 AGAQGRTEILAYMLKH-ATPDLNKHNRYG-GNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 451 NKTGFTA-----------------VHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 491
N G+TA V L +NG +Q +++ A++ Y+ + G T +
Sbjct: 137 NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD-YANQKGYTEI 193
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/241 (19%), Positives = 89/241 (36%), Gaps = 63/241 (26%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AA +D + +L + + +G TP++ A ++ + L++ G D +N I
Sbjct: 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI 71
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
++P A + E++ +++ +N N G +A LIP
Sbjct: 72 SDSPYLYAGAQGRTEILAYMLKH--------ATPDLNKHNRYGGNA-----------LIP 112
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
K VKLLLE G + +
Sbjct: 113 AAEKGHIDNVKLLLEDG---------------------------------------REDI 133
Query: 223 NKQTSIGWTPLLIAC-----NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+ Q G+T L+ A N+ + ++V ++ N A + D GR+A+ A + GY ++
Sbjct: 134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193
Query: 278 S 278
S
Sbjct: 194 S 194
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA ++K G+T +HLAA+ GH +++E + + A K G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 488 VTALHVAAYFGQAD 501
TA ++ G D
Sbjct: 69 KTAFDISIDNGNED 82
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA N DG TP+H AA+ G+L +++LL+ G D ++K
Sbjct: 9 AARAGQDDEVRI-LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 67
Query: 103 GETPLHLASRNCKAEVVDLL 122
G+T ++ N ++ ++L
Sbjct: 68 GKTAFDISIDNGNEDLAEIL 87
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS 476
TPL LAA GH +V VL+KAGA ++K G TA ++ NG+ + E ++ +
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA ++A D G P+H+AA+ E+ ++ L+A V A K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKF 67
Query: 385 GNTCAHIAAMQGSVGVIEELMK 406
G T I+ G+ + E L K
Sbjct: 68 GKTAFDISIDNGNEDLAEILQK 89
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 373
TPLHLAA G L++ ++LL GA ++A D G+ ++ N ++A+I +A
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
+N + G+TPL +A GH+E+V +L A V+ D+ G++A ++ ++G
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNG 79
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI-SQEKVL 135
AA+ G +++L+ +G D K+K G TPLHLA+R E+V++L++ ++ +Q+K
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 136 E-----YVNSVNEDGASALHYAC 153
+ +++ NED A L A
Sbjct: 69 KTAFDISIDNGNEDLAEILQKAA 91
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
AA GQ D VR L+++ D + G TPLHLAA G+ +V +LL
Sbjct: 9 AARAGQDDEVRILMANGADVNAKD-------------KDGYTPLHLAAREGHLEIVEVLL 55
Query: 554 NSAGVQVDAQTQ 565
AG V+AQ +
Sbjct: 56 -KAGADVNAQDK 66
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
LL A G + V ++ N A V+ D++G + LHLAA G+L++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI 50
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
VN+ ++DG + LH A + E++ + LL+AGADV+ Q K +TAF
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEV-----------LLKAGADVNAQDKFG-KTAFDIS 75
Query: 198 AVAGNNDV 205
GN D+
Sbjct: 76 IDNGNEDL 83
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
TPLHLAA G L+V KLLL+ GA + A D G+ ++ N ++A+I
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487
AA G + VR+L+ GA ++K G T +HLAA+NGH +V++ + + A K G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 488 VTALHVAAYFGQAD 501
TA ++ G D
Sbjct: 91 KTAFDISIDNGNED 104
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 62 GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
G ++ +D G+ + AA + G +++L+ +G D K+K G TPLHLA+RN EVV L
Sbjct: 17 GSHMGSDLGKKLLEAA-RAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKL 75
Query: 122 LIQ 124
L++
Sbjct: 76 LLE 78
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 43 AARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
AAR D + L+ +GA +G TP+H AA+ G+L ++LLLE G D ++K
Sbjct: 31 AARAGQDDEVRI-LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF 89
Query: 103 GETPLHLASRNCKAEVVDLL 122
G+T ++ N ++ ++L
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
+TPL LAA GH VV++L++AGA ++K G TA ++ NG+ + E
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
AA AGQ ++L+ GA + A D G P+H+AA+N EV ++ L A V A K
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKF 89
Query: 385 GNTCAHIAAMQGSVGVIEEL 404
G T I+ G+ + E L
Sbjct: 90 GKTAFDISIDNGNEDLAEIL 109
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 14/72 (19%)
Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
AA GQ D VR L+++ D ++G TPLHLAA +G+ VV+LLL
Sbjct: 31 AARAGQDDEVRILMANGADVAAKD-------------KNGSTPLHLAARNGHLEVVKLLL 77
Query: 554 NSAGVQVDAQTQ 565
AG V AQ +
Sbjct: 78 -EAGADVXAQDK 88
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
G TPL +A GH+E+V +L A V D+ G++A ++ ++G
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
V + +++G++ LH A + E+ VKLLLEAGADV Q K +TAF
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEV-----------VKLLLEAGADVXAQDKFG-KTAFDIS 97
Query: 198 AVAGNNDV 205
GN D+
Sbjct: 98 IDNGNEDL 105
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
LL A G + V ++ N A V D+ G + LHLAA +G+L+V
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEV 72
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
+NK G+TPL+ A G +E V +L A + +E SAL LA+ GY +
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG-- 86
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
L+ + I+I TPL A ++ + LL G
Sbjct: 87 ---------------------LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
A + D G P+ +A + +V Q+
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 20/127 (15%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
N + G TP+ A+ +G + T++ LLE G DP K E+ L LAS ++V LL+
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
+ +I N + +G + L YA + K V+ LL GAD++
Sbjct: 90 ERDVDI---------NIYDWNGGTPLLYAVRGNHV-----------KCVEALLARGADLT 129
Query: 184 LQTKQNH 190
+ +
Sbjct: 130 TEADSGY 136
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 322 LHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLV 378
+H A G+L K L G + ++ D++G P+ A+ E + L A P ++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
K+ + +A+ G ++ L++ D I N TPL A G H V
Sbjct: 66 A---KERESALSLASTGGYTDIVGLLLERDVDINIYDWNG---GTPLLYAVRGNHVKCVE 119
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQV 469
L+ GA T E +G+T + LA G+ +V
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKV 150
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNV 481
TPL A+ G VR L++ GA K +A+ LA+ G+ ++ + +N+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
Y G T L A V LL+ GA E ++SG TP+ LA
Sbjct: 98 YDWN-GGTPLLYAVRGNHVKCVEALLAR-----------GADLTTE--ADSGYTPMDLAV 143
Query: 542 YSGNENVVRLLLN 554
G V +++ N
Sbjct: 144 ALGYRKVQQVIEN 156
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 459 HLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDP 518
LAAQ +Q+ E +R L + G T L A+ FG+ +TVR LL +DP
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-----GADP 62
Query: 519 PTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
+ ++ + L LA+ G ++V LLL
Sbjct: 63 --------HILAKERESALSLASTGGYTDIVGLLL 89
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
T LH A AG ++ K L+ G +++A D G P+H AA N +V + + + ++
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 380 ATTKDGNTCA 389
T D T A
Sbjct: 132 MTYSDMQTAA 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 81 GNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNS 140
G +Q ++ + DP N G T LH A E+V L+QF N VN+
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---------VNA 98
Query: 141 VNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
+ DG + LH A ++ K L+E+GA V T + +TA C
Sbjct: 99 ADSDGWTPLHCAASCNNVQV-----------CKFLVESGAAVFAMTYSDMQTAADKC 144
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
P+L D+G T +H A G+ ++ L++ G + + G TPLH A+ +V L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 123 IQ 124
++
Sbjct: 123 VE 124
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
T L A GH +V+ LV+ G + + G+T +H AA + QV + + S A
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
L++ G N DG TP+H AA N+ + L+E G
Sbjct: 88 FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G+TALH A G + V+ L+ +D G TPLH AA N
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAAD-------------SDGWTPLHCAASCNNV 116
Query: 547 NVVRLLLNSAGVQVDAQT 564
V + L+ S G V A T
Sbjct: 117 QVCKFLVES-GAAVFAMT 133
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
T LH A AG ++ K L+ G +++A D G P+H AA N +V + + + ++
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 380 ATTKDGNTCA 389
T D T A
Sbjct: 132 MTYSDMQTAA 141
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 81 GNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNS 140
G +Q ++ + DP N G T LH A E+V L+QF N VN+
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---------VNA 98
Query: 141 VNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
+ DG + LH A ++ K L+E+GA V T + +TA C
Sbjct: 99 ADSDGWTPLHCAASCNNVQV-----------CKFLVESGAAVFAMTYSDMQTAADKC 144
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
P+L D+G T +H A G+ ++ L++ G + + G TPLH A+ +V L
Sbjct: 63 PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Query: 123 IQ 124
++
Sbjct: 123 VE 124
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
T L A GH +V+ LV+ G + + G+T +H AA + QV + + S A
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
L++ G N DG TP+H AA N+ + L+E G
Sbjct: 88 FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG 126
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G+TALH A G + V+ L+ +D G TPLH AA N
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAAD-------------SDGWTPLHCAASCNNV 116
Query: 547 NVVRLLLNSAGVQVDAQT 564
V + L+ S G V A T
Sbjct: 117 QVCKFLVES-GAAVFAMT 133
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 41/224 (18%)
Query: 66 TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQF 125
+ D+ +H AA+ G ++ L+E G P +N+ G T LHLA CK VD
Sbjct: 16 SDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA---CKFGCVD----- 67
Query: 126 VQNISQEKVLEYVNSVNE-----DGASALHYACQVTKAELIPIT---SKEDQKTVKLLLE 177
+Y+ SV E G +H A K +L+ +KE + + LL
Sbjct: 68 --------TAKYLASVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLN 119
Query: 178 AGADVSLQTKQNH------ETAFHYCAVAGNNDV-LTGMLEQMSGTEISKALNKQTSIGW 230
+ + +H +TA H+C G + +L Q+ + +K +
Sbjct: 120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADE----- 174
Query: 231 TPLLIAC---NRGHMELVNTMLNNHA--RVDVFDQEGRSALHLA 269
TPL A NR ++L + + + R+D +++G S LH A
Sbjct: 175 TPLXRAXEFRNREALDLXXDTVPSKSSLRLDYANKQGNSHLHWA 218
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 20/109 (18%)
Query: 449 DENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS 508
DEN +H+AA+ G + + + + G TALH+A FG DT + L S
Sbjct: 18 DENXE---KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74
Query: 509 HVPGTVKSDPPTGASFLGELGS-ESGMTPLHLAAYSGNENVVRLLLNSA 556
+GE+ S G P+HLA + ++V L+ A
Sbjct: 75 ----------------VGEVHSLWHGQKPIHLAVXANKTDLVVALVEGA 107
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Query: 41 NIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
++AAR D L+++G P + G T +H A K+G + T + L G ++
Sbjct: 25 HVAARKGQTDEVR-RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG--EVHSL 81
Query: 101 KIGETPLHLASRNCKAEVVDLLIQFVQNISQ--EKVLEYVN--SVNEDGASALHYACQVT 156
G+ P+HLA K ++V L++ + Q E +L + VNE G+ H Q
Sbjct: 82 WHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTA 141
Query: 157 KAELIPITSKEDQKTVKLLLEAGADVSLQTKQN 189
+ + E + +K+L++ GA + + K +
Sbjct: 142 LHWCVGL-GPEYLEXIKILVQLGASPTAKDKAD 173
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 23/149 (15%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
+NK G+TPL+ A G +E V +L A + +E SAL LA+ GY +
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG-- 86
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLG 341
L+ + I+I TPL A ++ + LL G
Sbjct: 87 ---------------------LLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG 125
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
A + D G P+ +A + +V Q+
Sbjct: 126 ADLTTEADSGYTPMDLAVALGYRKVQQVI 154
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 322 LHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLV 378
+H A G+L K L G + ++ D++G P+ A+ E + L A P ++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
K+ + +A+ G ++ L++ D I N TPL A G H V
Sbjct: 66 A---KERESALSLASTGGYTDIVGLLLERDVDINIYDWNG---GTPLLYAVHGNHVKCVE 119
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQV 469
L+ GA T E +G+T + LA G+ +V
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKV 150
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 20/127 (15%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
N + G TP+ A+ +G + T++ LLE G DP K E+ L LAS ++V LL+
Sbjct: 30 NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
+ +I N + +G + L YA K V+ LL GAD++
Sbjct: 90 ERDVDI---------NIYDWNGGTPLLYAVHGNHV-----------KCVEALLARGADLT 129
Query: 184 LQTKQNH 190
+ +
Sbjct: 130 TEADSGY 136
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNV 481
TPL A+ G VR L++ GA K +A+ LA+ G+ ++ + +N+
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97
Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
Y G T L A + V LL+ GA E ++SG TP+ LA
Sbjct: 98 YDWN-GGTPLLYAVHGNHVKCVEALLAR-----------GADLTTE--ADSGYTPMDLAV 143
Query: 542 YSGNENVVRLLLN 554
G V +++ N
Sbjct: 144 ALGYRKVQQVIEN 156
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 459 HLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDP 518
LAAQ +Q+ E +R L + G T L A+ FG+ +TVR LL +DP
Sbjct: 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-----GADP 62
Query: 519 PTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
+ ++ + L LA+ G ++V LLL
Sbjct: 63 --------HILAKERESALSLASTGGYTDIVGLLL 89
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 37/177 (20%)
Query: 133 KVLEYV-NSVNEDGASALHYA-----------------CQVTK-----------AELIPI 163
++L+YV N + +G +ALHY+ C+V K L +
Sbjct: 98 RLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL 157
Query: 164 TSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALN 223
+++D +TV L G +++ + Q +TA G DV+ +L +N
Sbjct: 158 KTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLA------CEADVN 210
Query: 224 KQTSIGWTPLLIACNRGHMELVNTMLN-NHARVDVFDQEGRSALHLAAEHGYLKVSS 279
Q G T L+ AC GH E+ +L + + D++G +AL +A + G +++S
Sbjct: 211 VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIAS 267
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
QT L LA G++ V K LL A ++ DD G + A ++ E+A + L +
Sbjct: 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDI 243
Query: 379 TATTKDGNTCAHIA 392
+ T +DG+T +A
Sbjct: 244 SLTDRDGSTALMVA 257
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 34/140 (24%)
Query: 450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAA-------------- 495
+N G TA+HLAA G +E++ ++ A + +++ G TALH+A
Sbjct: 41 QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100
Query: 496 -----------YFGQADTVRELLSHVPGTVKSDP-------PTGASFLGELGSES--GMT 535
Y Q+ SH P V S P P + +L +E+ G T
Sbjct: 101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160
Query: 536 PLHLAAYSGNENVVRLLLNS 555
PLH+A + +VRLL ++
Sbjct: 161 PLHVAVIHKDAEMVRLLRDA 180
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 114/290 (39%), Gaps = 59/290 (20%)
Query: 98 YKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTK 157
Y + G+T LHLA + +D L+ F EY++ N+ G +ALH A + +
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH------EYLDLQNDLGQTALHLAAILGE 57
Query: 158 AELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY-CAVAGNNDVLTGMLEQMSGT 216
A TV+ L AGA V + + H TA H C V + + + S
Sbjct: 58 A-----------STVEKLYAAGAGVLVAERGGH-TALHLACRVRAHTCACVLLQPRPSHP 105
Query: 217 EISKALNKQTSIGWTPLLIACNRGHMEL-VNTMLNNHARVDVFDQEGRSALHLAAEHGYL 275
+ S TP + H V++ N + D++ R L L AE+
Sbjct: 106 RDASDTYLTQSQDCTP-----DTSHAPAAVDSQPNPENEEEPRDEDWR--LQLEAEN--- 155
Query: 276 KVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDIL-----TLRK------QTPLHL 324
G + H + +H A ++ +L L K +TPLHL
Sbjct: 156 --YDGHTPLHVAV---------------IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
A EA V +LLL GA A G+ P+ A P +A++ LRAH
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL-LRAH 247
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 98/272 (36%), Gaps = 50/272 (18%)
Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
++ +TA H + + L +L +G E L+ Q +G T L +A G V
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAILGEASTVEK 63
Query: 248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307
+ A V V ++ G +ALHLA V H
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACR--------------------------------VRAH 91
Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 367
+L R P +A + + S D T D P V +Q N PE
Sbjct: 92 TCACVLLQPRPSHP----RDASDTYLTQ-------SQDCTPDTSHAPAAVDSQPN-PENE 139
Query: 368 QIFLRAHPSL-VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ 426
+ L + A DG+T H+A + ++ L D ++ TPL
Sbjct: 140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR--DAGADLNKPEPTCGRTPLH 197
Query: 427 LAAEGGHANVVRVLVKAGASCTDENKTGFTAV 458
LA E A+V+ +L+KAGA T G T +
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 80/221 (36%), Gaps = 59/221 (26%)
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRS-GVISARNRVTEATPLQLAAEGGHANVVRVL 440
T+DG+T H+A + ++ L+ F + +N + + T L LAA G A+ V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTVEKL 64
Query: 441 VKAGASCTDENKTGFTAVHLAAQ-NGHNQ--VLEEMRSSKALNVYSKKLGVTALHVAAYF 497
AGA + G TA+HLA + H VL + R S + Y
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD-----------TYL 113
Query: 498 GQADTVRELLSHVPGTVKSDP-------PTGASFLGELGSES------------------ 532
Q+ SH P V S P P + +L +E+
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173
Query: 533 ------------------GMTPLHLAAYSGNENVVRLLLNS 555
G TPLHLA + +V+ LLL +
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK--IGETPLHLASRNCKAEVVDLLIQ 124
DG TP+H A + + ++LL + G D + K + G TPLHLA A V++LL++
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
+L D GQT +H AA G T++ L G + + G T LHLA R
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR 87
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 17/209 (8%)
Query: 67 TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMY---KNKIGETPLHLASRNCKAEVVDLLI 123
T+DG T +H A + + L LL Y +N +G+T LHLA+ +A V+ L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
V G +ALH AC+V + + + +D
Sbjct: 66 AAGAG---------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR----DASDTY 112
Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
L Q+ + A ++ E+ + L + G TPL +A E
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172
Query: 244 LVNTMLNNHARVDVFDQE-GRSALHLAAE 271
+V + + A ++ + GR+ LHLA E
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVE 201
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 34/140 (24%)
Query: 450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAA-------------- 495
+N G TA+HLAA G +E++ ++ A + +++ G TALH+A
Sbjct: 41 QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP 100
Query: 496 -----------YFGQADTVRELLSHVPGTVKSDP-------PTGASFLGELGSES--GMT 535
Y Q+ SH P V S P P + +L +E+ G T
Sbjct: 101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160
Query: 536 PLHLAAYSGNENVVRLLLNS 555
PLH+A + +VRLL ++
Sbjct: 161 PLHVAVIHKDAEMVRLLRDA 180
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 114/290 (39%), Gaps = 59/290 (20%)
Query: 98 YKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTK 157
Y + G+T LHLA + +D L+ F EY++ N+ G +ALH A + +
Sbjct: 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH------EYLDLQNDLGQTALHLAAILGE 57
Query: 158 AELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY-CAVAGNNDVLTGMLEQMSGT 216
A TV+ L AGA V + + H TA H C V + + + S
Sbjct: 58 A-----------STVEKLYAAGAGVLVAERGGH-TALHLACRVRAHTCACVLLQPRPSHP 105
Query: 217 EISKALNKQTSIGWTPLLIACNRGHMEL-VNTMLNNHARVDVFDQEGRSALHLAAEHGYL 275
+ S TP + H V++ N + D++ R L L AE+
Sbjct: 106 RDASDTYLTQSQDCTP-----DTSHAPAAVDSQPNPENEEEPRDEDWR--LQLEAEN--- 155
Query: 276 KVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDIL-----TLRK------QTPLHL 324
G + H + +H A ++ +L L K +TPLHL
Sbjct: 156 --YDGHTPLHVAV---------------IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
A EA V +LLL GA A G+ P+ A P +A++ LRAH
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL-LRAH 247
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 98/272 (36%), Gaps = 50/272 (18%)
Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
++ +TA H + + L +L +G E L+ Q +G T L +A G V
Sbjct: 7 EDGDTALHLAVIHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAILGEASTVEK 63
Query: 248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307
+ A V V ++ G +ALHLA V H
Sbjct: 64 LYAAGAGVLVAERGGHTALHLACR--------------------------------VRAH 91
Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 367
+L R P +A + + S D T D P V +Q N PE
Sbjct: 92 TCACVLLQPRPSHP----RDASDTYLTQ-------SQDCTPDTSHAPAAVDSQPN-PENE 139
Query: 368 QIFLRAHPSL-VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ 426
+ L + A DG+T H+A + ++ L D ++ TPL
Sbjct: 140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR--DAGADLNKPEPTCGRTPLH 197
Query: 427 LAAEGGHANVVRVLVKAGASCTDENKTGFTAV 458
LA E A+V+ +L+KAGA T G T +
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 80/221 (36%), Gaps = 59/221 (26%)
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRS-GVISARNRVTEATPLQLAAEGGHANVVRVL 440
T+DG+T H+A + ++ L+ F + +N + + T L LAA G A+ V L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTVEKL 64
Query: 441 VKAGASCTDENKTGFTAVHLAAQ-NGHNQ--VLEEMRSSKALNVYSKKLGVTALHVAAYF 497
AGA + G TA+HLA + H VL + R S + Y
Sbjct: 65 YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD-----------TYL 113
Query: 498 GQADTVRELLSHVPGTVKSDP-------PTGASFLGELGSES------------------ 532
Q+ SH P V S P P + +L +E+
Sbjct: 114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM 173
Query: 533 ------------------GMTPLHLAAYSGNENVVRLLLNS 555
G TPLHLA + +V+ LLL +
Sbjct: 174 VRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK--IGETPLHLASRNCKAEVVDLLIQ 124
DG TP+H A + + ++LL + G D + K + G TPLHLA A V++LL++
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
+L D GQT +H AA G T++ L G + + G T LHLA R
Sbjct: 39 DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR 87
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 17/209 (8%)
Query: 67 TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMY---KNKIGETPLHLASRNCKAEVVDLLI 123
T+DG T +H A + + L LL Y +N +G+T LHLA+ +A V+ L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
V G +ALH AC+V + + + +D
Sbjct: 66 AAGAG---------VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR----DASDTY 112
Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
L Q+ + A ++ E+ + L + G TPL +A E
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172
Query: 244 LVNTMLNNHARVDVFDQE-GRSALHLAAE 271
+V + + A ++ + GR+ LHLA E
Sbjct: 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVE 201
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 68/172 (39%), Gaps = 6/172 (3%)
Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
L + PLH AA ++ K+LL G DD+G ++ A + + ++F++ +
Sbjct: 60 LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNW 119
Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435
L T + A V ++ + S + S + + + + + GH +
Sbjct: 120 RLXFYGKTGWKTSFYHAVXLNDVSIVSYFL----SEIPSTFDLAILLSCIHITIKNGHVD 175
Query: 436 VVRVLVKAGASCTDENKTGFTA-VHLAAQNGHNQVLEEMRSSKALNVYSKKL 486
+L+ S N F + LA N + L+ + +N+YS L
Sbjct: 176 XXILLLDYXTSTNTNNSLLFIPDIKLAIDNKDIEXLQALFKYD-INIYSANL 226
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 51 RCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
R LL +GA NL + + P+H AA + +++LL G D + G T L+ A
Sbjct: 45 RLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA 102
Query: 111 SRNCKAEVVDLLIQ 124
+ + V L ++
Sbjct: 103 VDSGNXQTVKLFVK 116
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL--RAHPSLVT 379
L AA G+++ + LL+ GA+ +A + G++PI V + VA++ L A P+
Sbjct: 16 LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA-RVAELLLLHGAEPNCAD 74
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEAT---PLQLAAEGGHANV 436
T H AA + G ++ L+ R+G AR V +A P+ LA E GH +V
Sbjct: 75 PATL--TRPVHDAARE---GFLDTLVVLHRAG---ARLDVRDAWGRLPVDLAEELGHRDV 126
Query: 437 VRVLVKAGASCTDEN 451
R L A N
Sbjct: 127 ARYLRAAAGGTRGSN 141
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL--RAHPSLVT 379
L AA GQ++ + LL+ GA +A + G++PI V + +VA++ L A P+
Sbjct: 16 LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGAEPNCAD 74
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEAT---PLQLAAEGGHANV 436
T H AA + G ++ L+ R+G AR V +A P+ LA E GH ++
Sbjct: 75 PATL--TRPVHDAARE---GFLDTLVVLHRAG---ARLDVCDAWGRLPVDLAEEQGHRDI 126
Query: 437 VRVL 440
R L
Sbjct: 127 ARYL 130
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
AA G + T++ LLE G DP N+ G P+ + A+V +LL+
Sbjct: 19 AAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQVAELLL 64
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 145 GASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNND 204
G+ +H + A L ++ +TV+ LLEAGAD + + + G+
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPI--QVMMMGSAQ 58
Query: 205 VLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRS 264
V +L + G E + A + P+ A G ++ + + AR+DV D GR
Sbjct: 59 VAELLL--LHGAEPNCADPATLT---RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113
Query: 265 ALHLAAEHGYLKVS 278
+ LA E G+ ++
Sbjct: 114 PVDLAEEQGHRDIA 127
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 31 LKSGAGPNLTNIAARVKDGDRCAL----MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTL 86
L +G P+ T + V+ DR +L L+++ + T G T +H N L
Sbjct: 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL 221
Query: 87 QLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
+LLL N+ GETPL +A R +LL Q
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL++GA N G+ P+H A G+ L L+ G D ++ G PL +A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 115 KAEVVDLL 122
A++V LL
Sbjct: 313 NADIVTLL 320
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 33/135 (24%)
Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG-----YLKVSSGKSLKH 285
TP A + + ++ +L + VD D+ GR+AL A G L +G L H
Sbjct: 47 TPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 105
Query: 286 SVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 345
M L T LH+AA + +V + L++LGA I+
Sbjct: 106 RDMRGGL---------------------------TALHMAAGYVRPEVVEALVELGADIE 138
Query: 346 ATDDQGQKPIHVAAQ 360
D++G + +A +
Sbjct: 139 VEDERGLTALELARE 153
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 50 DRCALMLLKSGAGPNLTTDD---GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETP 106
D+C +L ++GA +L D G T +H AA Y ++ L+E G D +++ G T
Sbjct: 90 DKCVRLLAEAGA--DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 147
Query: 107 LHLASRNCKAEVVDLLIQFVQNISQEKVL 135
L LA K +QF + I EKV+
Sbjct: 148 LELAREILKTTPKGNPMQFGRRIGLEKVI 176
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 47 KDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN-KIGET 105
+ D AL L + ++G+T + A G+ ++LL E G D +++ + G T
Sbjct: 54 RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 113
Query: 106 PLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTK 157
LH+A+ + EVV+ L++ +I E +E G +AL A ++ K
Sbjct: 114 ALHMAAGYVRPEVVEALVELGADIEVE---------DERGLTALELAREILK 156
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 37/175 (21%)
Query: 104 ETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPI 163
ETP A+R + L Q +++ V++V+E+G +AL + +
Sbjct: 46 ETPWWTAARKADEQA---LSQLLEDRD-------VDAVDENGRTALLFVAGLGS------ 89
Query: 164 TSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLE-----------Q 212
K V+LL EAGAD+ + + TA H A +V+ ++E
Sbjct: 90 -----DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERG 144
Query: 213 MSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM---LNNHARVD-VFDQEGR 263
++ E+++ + K T G P+ G +++N + + +A VD + ++ G+
Sbjct: 145 LTALELAREILKTTPKG-NPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGK 198
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
T L A G VR+L +AGA + + G TA+H+AA +V+E + A
Sbjct: 79 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138
Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVP 511
+ G+TAL +A RE+L P
Sbjct: 139 VEDERGLTALELA---------REILKTTP 159
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL++GA N G+ P+H A G+ L L+ G D ++ G PL +A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 115 KAEVVDLL 122
A++V LL
Sbjct: 313 NADIVTLL 320
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 10/112 (8%)
Query: 47 KDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN-KIGET 105
+ D AL L + ++G+T + A G+ ++LL E G D +++ + G T
Sbjct: 53 RKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT 112
Query: 106 PLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTK 157
LH+A+ + EVV+ L++ +I E +E G +AL A ++ K
Sbjct: 113 ALHMAAGYVRPEVVEALVELGADIEVE---------DERGLTALELAREILK 155
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 50 DRCALMLLKSGAGPNLTTDD---GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETP 106
D+C +L ++GA +L D G T +H AA Y ++ L+E G D +++ G T
Sbjct: 89 DKCVRLLAEAGA--DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 146
Query: 107 LHLASRNCKAEVVDLLIQFVQNISQEKVL 135
L LA K +QF + I EKV+
Sbjct: 147 LELAREILKTTPKGNPMQFGRRIGLEKVI 175
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 25/131 (19%)
Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
TP A + + ++ +L + VD D+ GR+AL A G S K ++
Sbjct: 46 TPWWTAARKADEQALSQLLEDR-DVDAVDENGRTALLFVAGLG-----SDKCVR------ 93
Query: 291 RLPPHNIIPNGFLVHDHAAVIDILTLRKQ-TPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
L+ + A +D +R T LH+AA + +V + L++LGA I+ D+
Sbjct: 94 ------------LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141
Query: 350 QGQKPIHVAAQ 360
+G + +A +
Sbjct: 142 RGLTALELARE 152
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
T L A G VR+L +AGA + + G TA+H+AA +V+E + A
Sbjct: 78 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137
Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVP 511
+ G+TAL +A RE+L P
Sbjct: 138 VEDERGLTALELA---------REILKTTP 158
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 104 ETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPI 163
ETP A+R + + L++ V++V+E+G +AL + +
Sbjct: 45 ETPWWTAARKADEQALSQLLEDRD----------VDAVDENGRTALLF-----------V 83
Query: 164 TSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
K V+LL EAGAD+ + + TA H A +V+ ++E + E+
Sbjct: 84 AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV 138
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL++GA N G+ P+H A G+ L L+ G D ++ G PL +A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 115 KAEVVDLL 122
A++V LL
Sbjct: 313 NADIVTLL 320
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
+ PLH AA+ GQL++ + LL GA I+A D P+ A ++ L
Sbjct: 36 RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 88
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 168 DQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTS 227
D VK + G DV+ +T + HY A G ++L +L + G +I N
Sbjct: 14 DLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLL--LKGADI----NAPDK 66
Query: 228 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSAL 266
TPLL A GH+ V +L+ A V +G +AL
Sbjct: 67 HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%)
Query: 59 SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
G N T + G+ P+H AA G L L+ LL G D +K TPL A
Sbjct: 24 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC 83
Query: 119 VDLLI 123
V LL+
Sbjct: 84 VKLLL 88
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
+ PLH AA+ GQL++ + LL GA I+A D P+ A ++ L
Sbjct: 41 RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 93
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
G N T + G+ P+H AA G L L+ LL G D +K TPL A V
Sbjct: 30 GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCV 89
Query: 120 DLLI 123
LL+
Sbjct: 90 KLLL 93
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
V T + G H AA G + ++E L+ + I+A ++ TPL A GH + V
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDK-HHITPLLSAVYEGHVSCV 89
Query: 438 RVLVKAGASCTDENKTGFTAV 458
++L+ GA T + G TA
Sbjct: 90 KLLLSKGADKTVKGPDGLTAF 110
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Query: 168 DQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTS 227
D VK + G DV+ +T + HY A G ++L +L + G +I N
Sbjct: 19 DLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLL--LKGADI----NAPDK 71
Query: 228 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSAL 266
TPLL A GH+ V +L+ A V +G +A
Sbjct: 72 HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAF 110
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
T LH A + L+ GA++++ D G P+H AA N + ++ ++
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
Query: 380 ATTKDGNT 387
T DG T
Sbjct: 116 TTLSDGAT 123
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
AA G L +Q +++ DP N+ G T LH A +VD LI N
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-------- 79
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
VNS + G + LH A S D L++ GA + T + TAF
Sbjct: 80 -VNSPDSHGWTPLHCA-----------ASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127
Query: 197 C 197
C
Sbjct: 128 C 128
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 28/154 (18%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDA-------------TDDQGQKPIHVAAQNNF 363
R + LH+A E LQ KLL++ GA++ A G+ P+ +AA
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 364 PEVAQIFLRA--HPSLVTATTKDGNTCAH-IAAMQGSVGVIEELMKFDRSGVISARNRVT 420
+V L P+ + AT GNT H + + + L+ G++ A R+
Sbjct: 154 WDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLC 213
Query: 421 ------------EATPLQLAAEGGHANVVRVLVK 442
+ TPL+LAA+ G + R +++
Sbjct: 214 PTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQ 247
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
+G T ++ AA+ GN+ + LL+ G DP NK G P+ +
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISAR 416
+++ A +G+TC +IAA G++ +++ L+ + I+ +
Sbjct: 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant
Aspartic Protease From Solanum Tuberosum
Length = 108
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 100 NKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNE 143
+ +GE PL A C+ VV + Q Q ++EKVLEYVN + E
Sbjct: 65 SSVGEAPLCTA---CEMAVVWMQNQLKQEGTKEKVLEYVNQLCE 105
>pdb|3OIC|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OIC|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Apo Form)
pdb|3OID|A Chain A, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|B Chain B, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|C Chain C, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
pdb|3OID|D Chain D, Crystal Structure Of Enoyl-Acp Reductases Iii (Fabl) From
B. Subtilis (Complex With Nadp And Tcl)
Length = 258
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 462 AQNGHNQVLEEMRSSKALNVYS---KKLGVTALHVAAYFGQADTVRELLSHVPGT 513
A+NG+N V+ RS KA + +KLGV L V A GQ ++E+ + T
Sbjct: 25 AENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDET 79
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 322 LHLA---AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
LHLA A L + ++ G +DA G +H AA N P+ ++ L+ +LV
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR-ALV 233
Query: 379 TATTKDGNTCAHIAAM-----------QGSVGVIEELMKFDRSGVISARN 417
+ G T IA Q G + D S VIS N
Sbjct: 234 GTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTEN 283
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
++++G + DG T +H AA Y L+LLL+ N+ GET L +A +
Sbjct: 192 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 251
Query: 115 KAEVVDLLIQ 124
E +LL Q
Sbjct: 252 HKECEELLEQ 261
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 70 GQTPVHAAAKYGNLVTLQLLLEDG--------GDPMYKNK------IGETPLHLASRNCK 115
GQT +H A + N + LL+E+G GD K K GE PL LA+ +
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160
Query: 116 AEVVDLLIQ 124
+V L+Q
Sbjct: 161 LAIVKFLLQ 169
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
++++G + DG T +H AA Y L+LLL+ N+ GET L +A +
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270
Query: 115 KAEVVDLLIQ 124
E +LL Q
Sbjct: 271 HKECEELLEQ 280
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 322 LHLA---AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
LHLA A L + ++ G +DA G +H AA N P+ ++ L+ +LV
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR-ALV 252
Query: 379 TATTKDGNTCAHIAAM-----------QGSVGVIEELMKFDRSGVIS 414
+ G T IA Q G + D S VIS
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVIS 299
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 62 GPNLTTDDGQTP----VHAAAKYGNLVTLQL---LLEDGGDPMYKNKIGETPLHLASRNC 114
G L D Q P +H A K N +L L ++++GG K G T LH A+
Sbjct: 178 GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN 237
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYA 152
+ + + LL+ K V +VNE G +AL A
Sbjct: 238 QPDCLKLLL---------KGRALVGTVNEAGETALDIA 266
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 391 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG-----A 445
+AA+ G ++ L S I + +LAAE GH +V+ L + A
Sbjct: 98 VAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXA 157
Query: 446 SCTDENKTGFTAVHLAAQNGHNQVLEEM 473
EN + A LAA+NGH VL +
Sbjct: 158 XIQAEN---YHAFRLAAENGHLHVLNRL 182
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 58/155 (37%), Gaps = 37/155 (23%)
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
L AA G+++ + LL+ GA +A + G++PI V
Sbjct: 16 LATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVM----------------------- 52
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 441
M GS V E L+ + + T P+ AA G + + VL
Sbjct: 53 ------------MMGSARVAELLLLH--GAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98
Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS 476
+AGA + G V LA + GH V +R++
Sbjct: 99 RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 133
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 42/161 (26%)
Query: 145 GASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQT----KQNHE-TAFHY--- 196
G SALH A + K + VKLL+E GADV L+ Q H+ T F++
Sbjct: 103 GHSALHIAIE-----------KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 151
Query: 197 ----CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPL----LIACNRGH-----ME 243
A DV+T +LE +L S+G T L +IA N +
Sbjct: 152 PLSLAACTKQWDVVTYLLE---NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 208
Query: 244 LVNTMLNNHARV-------DVFDQEGRSALHLAAEHGYLKV 277
+ + +L AR+ ++ + +G + L LAA+ G +++
Sbjct: 209 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 249
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 42/161 (26%)
Query: 145 GASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQT----KQNHE-TAFHY--- 196
G SALH A + K + VKLL+E GADV L+ Q H+ T F++
Sbjct: 90 GHSALHIAIE-----------KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL 138
Query: 197 ----CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPL----LIACNRGH-----ME 243
A DV+T +LE +L S+G T L +IA N +
Sbjct: 139 PLSLAACTKQWDVVTYLLE---NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195
Query: 244 LVNTMLNNHARV-------DVFDQEGRSALHLAAEHGYLKV 277
+ + +L AR+ ++ + +G + L LAA+ G +++
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,204,798
Number of Sequences: 62578
Number of extensions: 660797
Number of successful extensions: 3981
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1950
Number of HSP's gapped (non-prelim): 1021
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)