Query psy12891
Match_columns 567
No_of_seqs 353 out of 3824
Neff 11.8
Searched_HMMs 29240
Date Fri Aug 16 22:26:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2E-66 6.8E-71 507.5 47.4 397 58-554 2-398 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.1E-65 1.1E-69 499.1 46.9 391 6-510 10-400 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 4E-48 1.4E-52 364.1 33.1 305 69-564 24-331 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 2E-47 6.7E-52 359.4 32.7 304 9-449 24-329 (337)
5 3utm_A Tankyrase-1; tankyrase, 100.0 2.5E-46 8.4E-51 355.4 29.8 313 6-477 20-332 (351)
6 1wdy_A 2-5A-dependent ribonucl 100.0 3E-44 1E-48 330.5 33.5 266 229-565 5-284 (285)
7 3utm_A Tankyrase-1; tankyrase, 100.0 1.6E-43 5.4E-48 336.1 28.0 308 190-558 24-334 (351)
8 1wdy_A 2-5A-dependent ribonucl 100.0 5.5E-43 1.9E-47 322.0 26.1 259 9-376 4-278 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 2.8E-43 9.6E-48 334.4 22.9 313 191-559 38-371 (373)
10 2fo1_E LIN-12 protein; beta-ba 100.0 6E-43 2E-47 332.1 20.3 313 166-512 47-371 (373)
11 3d9h_A CDNA FLJ77766, highly s 100.0 5.2E-42 1.8E-46 313.0 25.1 231 312-563 53-283 (285)
12 3d9h_A CDNA FLJ77766, highly s 100.0 8.9E-41 3E-45 304.8 24.8 258 189-510 14-276 (285)
13 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-40 3.9E-45 299.2 23.3 230 310-555 2-245 (253)
14 2xai_A ASB-9, ankyrin repeat a 100.0 2.7E-40 9.2E-45 298.1 22.4 258 228-554 2-259 (261)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 6.4E-40 2.2E-44 294.3 22.6 207 303-512 41-248 (253)
16 3ljn_A Hypothetical protein; a 100.0 9.7E-41 3.3E-45 317.4 17.8 277 223-563 14-318 (364)
17 2xai_A ASB-9, ankyrin repeat a 100.0 1.5E-39 5.2E-44 293.2 24.5 222 317-560 2-223 (261)
18 3ljn_A Hypothetical protein; a 100.0 3.3E-40 1.1E-44 313.7 21.1 240 308-564 10-274 (364)
19 3b7b_A Euchromatic histone-lys 100.0 4.6E-39 1.6E-43 286.6 25.9 228 311-554 4-231 (237)
20 1k1a_A B-cell lymphoma 3-encod 100.0 1.8E-39 6.1E-44 290.2 22.7 232 312-558 3-240 (241)
21 1k1a_A B-cell lymphoma 3-encod 100.0 8.3E-39 2.9E-43 285.9 22.2 231 223-511 3-240 (241)
22 3b7b_A Euchromatic histone-lys 100.0 4.3E-38 1.5E-42 280.3 26.2 229 222-509 4-232 (237)
23 3eu9_A Huntingtin-interacting 100.0 8.3E-38 2.8E-42 279.5 25.2 234 313-563 4-239 (240)
24 3aji_A 26S proteasome non-ATPa 100.0 5.2E-38 1.8E-42 278.5 23.6 226 317-560 5-231 (231)
25 1oy3_D Transcription factor in 100.0 5.7E-38 2E-42 287.8 22.5 220 312-545 3-270 (282)
26 4b93_B Ankyrin repeat domain-c 100.0 8.2E-39 2.8E-43 287.6 15.4 235 224-510 6-242 (269)
27 4b93_B Ankyrin repeat domain-c 100.0 5.7E-39 1.9E-43 288.7 14.0 230 315-562 8-247 (269)
28 2f8y_A Notch homolog 1, transl 100.0 1.9E-37 6.5E-42 273.3 22.3 217 329-562 2-219 (223)
29 2dzn_A Probable 26S proteasome 100.0 4.1E-37 1.4E-41 272.2 24.3 221 318-555 2-227 (228)
30 1oy3_D Transcription factor in 100.0 2.7E-38 9.2E-43 290.0 15.5 252 187-499 6-270 (282)
31 3aji_A 26S proteasome non-ATPa 100.0 2.2E-37 7.5E-42 274.5 20.9 227 260-512 4-230 (231)
32 3kea_A K1L; tropism, ANK repea 100.0 7.1E-38 2.4E-42 285.4 14.7 233 50-376 13-246 (285)
33 2dzn_A Probable 26S proteasome 100.0 3.3E-36 1.1E-40 266.4 24.6 205 351-567 2-208 (228)
34 3kea_A K1L; tropism, ANK repea 100.0 2E-37 6.9E-42 282.4 15.6 240 197-513 6-247 (285)
35 2f8y_A Notch homolog 1, transl 100.0 1.2E-35 4E-40 261.9 25.3 208 303-513 9-217 (223)
36 1s70_B 130 kDa myosin-binding 100.0 1.6E-37 5.3E-42 287.2 12.3 246 230-509 41-286 (299)
37 3eu9_A Huntingtin-interacting 100.0 1.4E-35 4.7E-40 265.0 21.6 229 224-512 4-235 (240)
38 2rfa_A Transient receptor pote 100.0 1.4E-34 4.7E-39 256.6 23.5 207 317-563 2-226 (232)
39 2rfa_A Transient receptor pote 100.0 1.7E-34 6E-39 255.9 22.2 188 303-514 22-224 (232)
40 1ikn_D Protein (I-kappa-B-alph 100.0 3.9E-36 1.3E-40 267.0 10.5 219 313-543 3-229 (236)
41 1s70_B 130 kDa myosin-binding 100.0 4.4E-35 1.5E-39 270.8 17.6 249 68-407 38-286 (299)
42 1sw6_A Regulatory protein SWI6 100.0 3.1E-35 1E-39 273.5 15.4 232 6-273 48-327 (327)
43 1sw6_A Regulatory protein SWI6 100.0 2.5E-36 8.7E-41 280.8 7.0 271 200-544 29-327 (327)
44 3hra_A Ankyrin repeat family p 100.0 6.7E-33 2.3E-37 239.8 23.8 192 316-510 3-201 (201)
45 1ikn_D Protein (I-kappa-B-alph 100.0 1.4E-34 4.7E-39 257.0 13.6 217 257-497 3-229 (236)
46 2pnn_A Transient receptor pote 100.0 2E-34 6.9E-39 262.0 14.8 222 312-566 7-266 (273)
47 4gpm_A Engineered protein OR26 100.0 3.4E-33 1.2E-37 230.9 20.0 158 387-561 6-163 (169)
48 3hra_A Ankyrin repeat family p 100.0 2.7E-32 9.2E-37 236.0 23.7 191 349-555 3-200 (201)
49 2etb_A Transient receptor pote 100.0 2.7E-33 9.2E-38 252.1 16.7 197 317-513 1-247 (256)
50 2etb_A Transient receptor pote 100.0 2.4E-33 8.1E-38 252.4 15.5 206 350-563 1-250 (256)
51 4gpm_A Engineered protein OR26 100.0 3.1E-32 1.1E-36 225.1 20.3 157 320-513 6-162 (169)
52 2pnn_A Transient receptor pote 100.0 3.7E-32 1.3E-36 247.1 17.1 177 314-513 50-259 (273)
53 3jxi_A Vanilloid receptor-rela 100.0 1.6E-32 5.4E-37 247.8 12.4 215 315-562 2-253 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 3.1E-32 1.1E-36 245.9 13.6 186 306-514 30-252 (260)
55 4hbd_A KN motif and ankyrin re 100.0 3.1E-31 1E-35 240.1 15.0 192 316-510 74-273 (276)
56 4hbd_A KN motif and ankyrin re 100.0 1.3E-30 4.4E-35 236.1 14.8 193 352-559 77-276 (276)
57 3v30_A DNA-binding protein rfx 100.0 6.1E-30 2.1E-34 214.8 17.8 166 385-566 2-167 (172)
58 1ihb_A P18-INK4C(INK6), cyclin 100.0 8.6E-30 2.9E-34 211.8 16.8 159 384-559 4-162 (162)
59 3v31_A Ankyrin repeat family A 100.0 2.1E-29 7.1E-34 210.4 17.8 161 384-561 2-162 (167)
60 3f6q_A Integrin-linked protein 100.0 1.3E-29 4.5E-34 214.1 16.5 169 383-567 3-171 (179)
61 2rfm_A Putative ankyrin repeat 100.0 2.3E-29 7.7E-34 215.5 17.6 159 381-555 31-189 (192)
62 2y1l_E Darpin-8.4; hydrolase-i 100.0 8.1E-29 2.8E-33 207.0 18.8 158 382-555 11-168 (169)
63 2rfm_A Putative ankyrin repeat 100.0 8.3E-29 2.8E-33 211.9 18.5 163 311-510 28-190 (192)
64 3v31_A Ankyrin repeat family A 100.0 1.1E-28 3.7E-33 206.1 18.3 158 9-214 2-159 (167)
65 2aja_A Ankyrin repeat family p 100.0 5.7E-32 2E-36 252.6 -1.9 190 47-279 76-271 (376)
66 1awc_B Protein (GA binding pro 100.0 9E-29 3.1E-33 203.0 17.4 150 386-552 3-152 (153)
67 2vge_A RELA-associated inhibit 100.0 9.4E-32 3.2E-36 235.5 -0.5 199 53-280 1-206 (229)
68 3v30_A DNA-binding protein rfx 100.0 1.3E-28 4.5E-33 206.6 18.5 168 319-490 3-171 (172)
69 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.3E-28 4.4E-33 203.2 17.2 154 385-555 2-155 (156)
70 2aja_A Ankyrin repeat family p 100.0 1.9E-32 6.6E-37 255.8 -6.6 316 44-508 41-370 (376)
71 2vge_A RELA-associated inhibit 100.0 7.8E-32 2.7E-36 236.1 -2.8 194 318-517 21-219 (229)
72 3twr_A Tankyrase-2; ankyrin re 100.0 5.8E-29 2E-33 207.3 14.8 160 382-558 5-164 (165)
73 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.7E-29 2.3E-33 206.4 14.9 136 56-212 24-159 (162)
74 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.7E-28 1.2E-32 203.0 19.2 157 317-510 13-169 (169)
75 1awc_B Protein (GA binding pro 100.0 1.7E-27 5.8E-32 195.4 17.9 149 353-506 4-152 (153)
76 3twr_A Tankyrase-2; ankyrin re 100.0 3.6E-28 1.2E-32 202.4 13.1 160 348-511 5-164 (165)
77 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.4E-27 8.2E-32 195.5 16.9 153 352-509 3-155 (156)
78 3f6q_A Integrin-linked protein 100.0 1.8E-27 6.1E-32 201.0 15.6 160 352-514 6-165 (179)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.8E-28 9.7E-33 216.0 8.4 165 383-565 3-170 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3E-28 1E-32 215.8 7.6 162 7-216 2-165 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 6.3E-27 2.2E-31 187.5 12.3 130 415-559 6-136 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 3.5E-27 1.2E-31 194.0 11.0 135 418-567 9-144 (156)
83 3t8k_A Uncharacterized protein 99.9 2.3E-27 7.9E-32 199.5 8.0 163 385-565 6-185 (186)
84 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.8E-25 6.1E-30 177.1 15.8 126 420-559 1-126 (126)
85 1d9s_A Cyclin-dependent kinase 99.9 1.2E-25 4.2E-30 180.0 14.4 133 60-214 2-135 (136)
86 2jab_A H10-2-G3; HER2, darpin, 99.9 1.3E-25 4.5E-30 179.8 13.0 124 419-555 12-135 (136)
87 3t8k_A Uncharacterized protein 99.9 7.5E-26 2.6E-30 190.3 9.7 160 9-213 5-177 (186)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 3E-25 1E-29 177.7 12.6 128 5-179 9-136 (136)
89 1bi7_B P16INK4A, MTS1, multipl 99.9 2.7E-25 9.4E-30 182.6 11.0 143 314-494 8-151 (156)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.9E-24 6.4E-29 171.2 14.6 126 9-181 1-126 (126)
91 3c5r_A BARD-1, BRCA1-associate 99.9 1.5E-24 5E-29 174.1 9.6 127 416-555 5-131 (137)
92 3deo_A Signal recognition part 99.9 4.1E-24 1.4E-28 180.7 11.0 140 7-212 41-181 (183)
93 3ehr_A Osteoclast-stimulating 99.9 4.6E-24 1.6E-28 187.0 9.6 134 420-567 72-206 (222)
94 3c5r_A BARD-1, BRCA1-associate 99.9 4.2E-24 1.4E-28 171.4 8.5 132 60-213 1-132 (137)
95 3ui2_A Signal recognition part 99.9 1.3E-23 4.3E-28 186.3 11.5 140 8-213 43-183 (244)
96 3aaa_C Myotrophin, protein V-1 99.9 7.8E-24 2.7E-28 166.2 8.1 113 6-154 3-115 (123)
97 3deo_A Signal recognition part 99.9 3.1E-23 1.1E-27 175.3 12.3 139 383-555 42-181 (183)
98 3aaa_C Myotrophin, protein V-1 99.9 1.9E-23 6.5E-28 164.0 9.7 112 420-544 6-117 (123)
99 3ui2_A Signal recognition part 99.9 2.3E-23 7.8E-28 184.7 11.2 138 384-555 44-182 (244)
100 2b0o_E UPLC1; arfgap, structur 99.9 2.5E-22 8.6E-27 183.0 15.7 143 385-546 151-299 (301)
101 2b0o_E UPLC1; arfgap, structur 99.9 5.4E-23 1.9E-27 187.4 10.0 135 42-203 156-299 (301)
102 1dcq_A PYK2-associated protein 99.9 1.3E-21 4.3E-26 176.3 17.9 124 423-560 132-264 (278)
103 3ehr_A Osteoclast-stimulating 99.9 5.7E-23 2E-27 180.0 8.5 133 7-186 70-203 (222)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 3E-22 1E-26 148.1 10.9 92 9-127 1-92 (93)
105 1dcq_A PYK2-associated protein 99.9 9.4E-22 3.2E-26 177.1 15.0 195 315-513 63-264 (278)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.1E-21 3.6E-26 145.1 11.9 92 420-511 1-92 (93)
107 3lvq_E ARF-GAP with SH3 domain 99.9 3.3E-21 1.1E-25 189.4 15.6 126 387-512 134-265 (497)
108 3lvq_E ARF-GAP with SH3 domain 99.8 3.5E-21 1.2E-25 189.2 13.2 130 42-198 137-275 (497)
109 2l6b_A NR1C; ankyrin, consensu 99.8 2.7E-21 9.2E-26 149.6 8.0 109 5-149 4-112 (115)
110 3jue_A Arfgap with coiled-coil 99.8 1.7E-20 5.8E-25 174.4 14.2 167 383-561 197-366 (368)
111 3jue_A Arfgap with coiled-coil 99.8 2E-20 6.8E-25 173.9 13.8 143 350-496 198-346 (368)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-20 3.6E-25 146.3 8.8 104 450-567 5-108 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 6.4E-19 2.2E-23 134.5 9.4 91 5-122 19-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 1.5E-18 5.2E-23 132.4 9.6 92 415-506 18-109 (110)
115 4g26_A Pentatricopeptide repea 81.0 4.7 0.00016 39.1 8.3 110 84-213 91-201 (501)
116 1gp8_A Protein (scaffolding pr 50.7 12 0.00043 20.5 2.2 18 74-91 17-34 (40)
117 4g26_A Pentatricopeptide repea 36.4 44 0.0015 32.2 5.5 26 322-347 33-62 (501)
118 3zrh_A Ubiquitin thioesterase 34.9 92 0.0032 28.5 6.5 25 101-125 67-91 (454)
119 3qil_A Clathrin heavy chain 1; 32.7 26 0.00088 25.6 2.3 35 94-128 26-60 (125)
120 3gvo_A Pumilio 2, pumilio homo 26.1 46 0.0016 30.2 3.4 57 481-547 211-267 (351)
121 3mkq_B Coatomer subunit alpha; 22.5 2.9E+02 0.01 21.9 8.4 45 71-125 9-59 (177)
122 3mkq_B Coatomer subunit alpha; 22.2 3E+02 0.01 21.9 10.4 137 386-561 9-146 (177)
123 3zrh_A Ubiquitin thioesterase 21.6 1.9E+02 0.0064 26.6 6.1 26 67-92 66-91 (454)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-66 Score=507.51 Aligned_cols=397 Identities=31% Similarity=0.437 Sum_probs=312.7
Q ss_pred hcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhh
Q psy12891 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEY 137 (567)
Q Consensus 58 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~ 137 (567)
+.|++++..+..|+||||+||..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.|++
T Consensus 2 ~~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--------- 72 (437)
T 1n11_A 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK--------- 72 (437)
T ss_dssp -------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---------
T ss_pred CCCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---------
Confidence 46899999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcc
Q psy12891 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTE 217 (567)
Q Consensus 138 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~ 217 (567)
++.++..|.||||+|+.. ++.+++++|+++|++++..+.. +.||||+|+..|+.+++++|++.+...
T Consensus 73 ~~~~~~~g~t~L~~A~~~-----------g~~~~v~~Ll~~ga~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~- 139 (437)
T 1n11_A 73 VNAKAKDDQTPLHCAARI-----------GHTNMVKLLLENNANPNLATTA-GHTPLHIAAREGHVETVLALLEKEASQ- 139 (437)
T ss_dssp SSCCCTTSCCHHHHHHHH-----------TCHHHHHHHHHHTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHHTTCCS-
T ss_pred CCCCCCCCCCHHHHHHHC-----------CCHHHHHHHHhCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCC-
Confidence 788899999999999985 4667799999999999876654 599999999999999999999986653
Q ss_pred hhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCC
Q psy12891 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNI 297 (567)
Q Consensus 218 ~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (567)
+..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++
T Consensus 140 -----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~----------------------------- 185 (437)
T 1n11_A 140 -----ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV----------------------------- 185 (437)
T ss_dssp -----CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHH-----------------------------
T ss_pred -----cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH-----------------------------
Confidence 4567789999999999999999999999999988877666555555
Q ss_pred CCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Q psy12891 298 IPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377 (567)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 377 (567)
|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+
T Consensus 186 ---------------------------A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~- 237 (437)
T 1n11_A 186 ---------------------------AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS- 237 (437)
T ss_dssp ---------------------------HHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred ---------------------------HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-
Confidence 5555667777777777777777777777777777777777777777777665
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcH
Q psy12891 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTA 457 (567)
Q Consensus 378 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 457 (567)
.+..+..|.||||+|+..++.+++++|++.+.+.. ..+..|.||||+|+..|+.+++++|+++|++++.++..|+||
T Consensus 238 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 314 (437)
T 1n11_A 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN---LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 314 (437)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT---CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCH
T ss_pred CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCH
Confidence 56666777777777777777777777777655432 334467777777777777777777777777777777777777
Q ss_pred HHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHH
Q psy12891 458 VHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537 (567)
Q Consensus 458 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l 537 (567)
||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++. +.+|..|.|||
T Consensus 315 L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~-------------~~~~~~g~t~l 381 (437)
T 1n11_A 315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-------------NEVSSDGTTPL 381 (437)
T ss_dssp HHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------------CCCCSSSCCHH
T ss_pred HHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC-------------CCCCCCCCCHH
Confidence 77777777777777777777777777777777777777777777777777776654 45567777777
Q ss_pred HHHHHcCCHHHHHHHHh
Q psy12891 538 HLAAYSGNENVVRLLLN 554 (567)
Q Consensus 538 ~~A~~~~~~~~v~~Ll~ 554 (567)
++|.+.|+.+++++|..
T Consensus 382 ~~A~~~g~~~~~~~l~~ 398 (437)
T 1n11_A 382 AIAKRLGYISVTDVLKV 398 (437)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHh
Confidence 77777777777777754
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-65 Score=499.06 Aligned_cols=391 Identities=30% Similarity=0.382 Sum_probs=352.5
Q ss_pred cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHH
Q psy12891 6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVT 85 (567)
Q Consensus 6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~ 85 (567)
.++.|+||||+||..|+.+.|. +|+++|++++.++..|.||||+|+..|+.++
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~---------------------------~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~ 62 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVK---------------------------NLLQRGASPNVSNVKVETPLHMAARAGHTEV 62 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHH---------------------------HHHHTTCCSCCSSSCCCCHHHHHHHHTCHHH
T ss_pred cCCCCCCHHHHHHHCCCHHHHH---------------------------HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 5788999999999999988443 5788899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccc
Q psy12891 86 LQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITS 165 (567)
Q Consensus 86 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~ 165 (567)
+++|+++|++++.++..|.||||+|+..|+.++|++|+++|++ ++..+..|.|||++|+..
T Consensus 63 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------~~~~~~~g~t~L~~A~~~---------- 123 (437)
T 1n11_A 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN---------PNLATTAGHTPLHIAARE---------- 123 (437)
T ss_dssp HHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTCCCHHHHHHHH----------
T ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCC---------CCCCCCCCCcHHHHHHHc----------
Confidence 9999999999999999999999999999999999999999988 677889999999999984
Q ss_pred cccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHH
Q psy12891 166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245 (567)
Q Consensus 166 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v 245 (567)
++.+++++|+++|++++..... +.||||+|+..|+.+++++|++.+... +..+..|.||||+|+..++.+++
T Consensus 124 -g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g~t~L~~A~~~~~~~~v 195 (437)
T 1n11_A 124 -GHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHP------NAAGKNGLTPLHVAVHHNNLDIV 195 (437)
T ss_dssp -TCHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCT------TCCCSSCCCHHHHHHHTTCHHHH
T ss_pred -CCHHHHHHHHhCCCCCcCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCCCC------CCCCCCCCCHHHHHHHcCCHHHH
Confidence 5667799999999998866554 599999999999999999999987654 56788899999999999999999
Q ss_pred HHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHH
Q psy12891 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLA 325 (567)
Q Consensus 246 ~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a 325 (567)
++|+++|++++..+..| .|||++|
T Consensus 196 ~~Ll~~g~~~~~~~~~g--------------------------------------------------------~t~L~~A 219 (437)
T 1n11_A 196 KLLLPRGGSPHSPAWNG--------------------------------------------------------YTPLHIA 219 (437)
T ss_dssp HHHGGGTCCSCCCCTTC--------------------------------------------------------CCHHHHH
T ss_pred HHHHhCCCCCCCcCCCC--------------------------------------------------------CCHHHHH
Confidence 99999999887665444 4566666
Q ss_pred HHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12891 326 AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM 405 (567)
Q Consensus 326 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll 405 (567)
+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+ .+..+..|.||||+|+..++.+++++|+
T Consensus 220 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 298 (437)
T 1n11_A 220 AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLI 298 (437)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 777889999999999999999999999999999999999999999998877 6788899999999999999999999999
Q ss_pred hcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccc
Q psy12891 406 KFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKK 485 (567)
Q Consensus 406 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 485 (567)
+.+.+. +..+..|.||||+|+..|+.+++++|+++|+++|.++..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus 299 ~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~ 375 (437)
T 1n11_A 299 KHGVMV---DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375 (437)
T ss_dssp HHTCCT---TCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred hCCccC---CCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCC
Confidence 987653 34455799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891 486 LGVTALHVAAYFGQADTVRELLSHV 510 (567)
Q Consensus 486 ~g~t~l~~A~~~~~~~~~~~Ll~~~ 510 (567)
.|+|||++|+..|+.+++++|....
T Consensus 376 ~g~t~l~~A~~~g~~~~~~~l~~~~ 400 (437)
T 1n11_A 376 DGTTPLAIAKRLGYISVTDVLKVVT 400 (437)
T ss_dssp SSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcc
Confidence 9999999999999999999997653
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4e-48 Score=364.09 Aligned_cols=305 Identities=24% Similarity=0.297 Sum_probs=235.1
Q ss_pred CCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCC-CCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhccccccccc
Q psy12891 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK-IGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGAS 147 (567)
Q Consensus 69 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t 147 (567)
+|.|+||.|++.|++++|++||++|+++|.++. .|+||||+|+..|+.++|++|+++|++ ++.++..+.+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~---------~~~~~~~~~~ 94 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD---------PVLRKKNGAT 94 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCC
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc---------hhhhccCCCc
Confidence 578999999999999999999999999998875 589999999999999999999998877 5666667777
Q ss_pred HHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCC
Q psy12891 148 ALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTS 227 (567)
Q Consensus 148 ~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~ 227 (567)
+++.++..+ ...++..+++.++++ +..+.
T Consensus 95 ~~~~~~~~~-----------~~~~~~~~~~~~~~~----------------------------------------~~~d~ 123 (337)
T 4g8k_A 95 PFILAAIAG-----------SVKLLKLFLSKGADV----------------------------------------NECDF 123 (337)
T ss_dssp HHHHHHHHT-----------CHHHHHHHHTTTCCT----------------------------------------TCBCT
T ss_pred hhHHHHhcc-----------cchhhHHhhhccchh----------------------------------------hhhcc
Confidence 777766532 333455555555444 34566
Q ss_pred CCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccch
Q psy12891 228 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307 (567)
Q Consensus 228 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (567)
.|.|||++|+..|+.+++++|+++|++++.......
T Consensus 124 ~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~-------------------------------------------- 159 (337)
T 4g8k_A 124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE-------------------------------------------- 159 (337)
T ss_dssp TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC---------------------------------------------
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc--------------------------------------------
Confidence 678888888888889999999999988876543211
Q ss_pred hhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC
Q psy12891 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGN 386 (567)
Q Consensus 308 ~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 386 (567)
.....+..|.||||+|+..|+.+++++|++ .|++++..+..|.|+++.++..+..
T Consensus 160 --~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~---------------------- 215 (337)
T 4g8k_A 160 --DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD---------------------- 215 (337)
T ss_dssp ------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT----------------------
T ss_pred --ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc----------------------
Confidence 122334567788888888888888888885 4788877777777776654432110
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc
Q psy12891 387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH 466 (567)
Q Consensus 387 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 466 (567)
.+..+++++|+++|+++|.++..|+||||+|+..|+
T Consensus 216 --------------------------------------------~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 216 --------------------------------------------SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp --------------------------------------------TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred --------------------------------------------ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Confidence 012356788899999999999999999999999999
Q ss_pred HHHHHHHHhc-ccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891 467 NQVLEEMRSS-KALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 545 (567)
Q Consensus 467 ~~~v~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~ 545 (567)
.+++++|++. |++++.+|..|+||||+|+..|+.+++++|++++++. ++.+||++|+++|+
T Consensus 252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~------------------n~~~~L~~A~~~~~ 313 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST------------------DCGDLVMTARRNYD 313 (337)
T ss_dssp HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS------------------TTCCHHHHHHHTTC
T ss_pred hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------------------CCCCHHHHHHHcCC
Confidence 9999999875 7888999999999999999999999999999987643 34579999999999
Q ss_pred HHHHHHHHhccCCcccccc
Q psy12891 546 ENVVRLLLNSAGVQVDAQT 564 (567)
Q Consensus 546 ~~~v~~Ll~~~g~~~~~~~ 564 (567)
.++|++||++ |||||...
T Consensus 314 ~~iv~~Ll~~-GA~~d~~~ 331 (337)
T 4g8k_A 314 HSLVKVLLSH-GAKEDFHP 331 (337)
T ss_dssp HHHHHHHHHT-TCCC----
T ss_pred HHHHHHHHHC-cCCCCCCC
Confidence 9999999996 99998754
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2e-47 Score=359.38 Aligned_cols=304 Identities=27% Similarity=0.339 Sum_probs=242.7
Q ss_pred CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCC-CCChHHHHHHHhCCHHHHH
Q psy12891 9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTD-DGQTPVHAAAKYGNLVTLQ 87 (567)
Q Consensus 9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~ 87 (567)
.|.||||.||+.|+.++| ++|+++|+|+|.++. .|+||||+||..|+.++|+
T Consensus 24 ~~~t~L~~Av~~g~~~~V---------------------------~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~ 76 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLV---------------------------QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE 76 (337)
T ss_dssp HHHHHHHHHHHTTCHHHH---------------------------HHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred CCChHHHHHHHcCCHHHH---------------------------HHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHH
Confidence 467899999999998744 357888999998875 5999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccc
Q psy12891 88 LLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE 167 (567)
Q Consensus 88 ~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~ 167 (567)
+|+++|++++.++..+.++++.++..+...++..+++.+.+ ++..+..|.|||++|+.. +
T Consensus 77 ~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~d~~g~t~l~~A~~~-----------~ 136 (337)
T 4g8k_A 77 LLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD---------VNECDFYGFTAFMEAAVY-----------G 136 (337)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---------TTCBCTTCCBHHHHHHHT-----------T
T ss_pred HHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccch---------hhhhccCCCCHHHHHHHc-----------C
Confidence 99999999999999999999999999999999999998877 788899999999999984 5
Q ss_pred cHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHH
Q psy12891 168 DQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247 (567)
Q Consensus 168 ~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~ 247 (567)
+.+++++|+++|++++...... ......+..|.||||+|+..|+.+++++
T Consensus 137 ~~~~~~~ll~~ga~~~~~~~~~------------------------------~~~~~~~~~g~T~L~~A~~~g~~~~v~~ 186 (337)
T 4g8k_A 137 KVKALKFLYKRGANVNLRRKTK------------------------------EDQERLRKGGATALMDAAEKGHVEVLKI 186 (337)
T ss_dssp CHHHHHHHHHTTCCTTCCCCCC-----------------------------------CTTCSCCHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHcCCCcchhhccc------------------------------cccccccCCCCcHHHHHHHCCCHHHHHH
Confidence 6677999999999987654321 0123456679999999999999999999
Q ss_pred HHh-CCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHH
Q psy12891 248 MLN-NHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAA 326 (567)
Q Consensus 248 Ll~-~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~ 326 (567)
|++ .|++++..+..|.|+++.++..+..
T Consensus 187 LL~~~gad~n~~d~~g~t~l~~~~~~~~~--------------------------------------------------- 215 (337)
T 4g8k_A 187 LLDEMGADVNACDNMGRNALIHALLSSDD--------------------------------------------------- 215 (337)
T ss_dssp HHHHSCCCTTCCCTTSCCHHHHHHHHSCT---------------------------------------------------
T ss_pred HHhccCCCcCccCCCCCcHHHHHHHHcCc---------------------------------------------------
Confidence 995 6999999999999998877654311
Q ss_pred HcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy12891 327 EAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406 (567)
Q Consensus 327 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~ 406 (567)
.+..+++++|+++|++++.++..|.||||+|+..++.++++.|++.....++.++..|+||||+|+..|+.+++++|++
T Consensus 216 -~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 294 (337)
T 4g8k_A 216 -SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294 (337)
T ss_dssp -TTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHT
T ss_pred -ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 1234688999999999999999999999999999999999999987655566677777766666666666666666666
Q ss_pred cCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Q psy12891 407 FDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 449 (567)
Q Consensus 407 ~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 449 (567)
+|++. ...+|||+|++.|+.++|++|+++||++|.
T Consensus 295 ~GAd~--------n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 295 RGAST--------DCGDLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp TSCSS--------TTCCHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred CCCCC--------CCCCHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 55442 123466666666666666666666666554
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.5e-46 Score=355.38 Aligned_cols=313 Identities=27% Similarity=0.314 Sum_probs=226.0
Q ss_pred cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHH
Q psy12891 6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVT 85 (567)
Q Consensus 6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~ 85 (567)
.++++.|+||.||+.|+.+.|..+| .+.|++++.++..|.||||+|+..|+.++
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll--------------------------~~~~~~~~~~d~~g~t~L~~A~~~g~~~~ 73 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALL--------------------------TPLNVNCHASDGRKSTPLHLAAGYNRVRI 73 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHC--------------------------CTTTTTCCCSSTTCCCHHHHHHHTTCHHH
T ss_pred eccccchhHHHHHHcCCHHHHHHHH--------------------------HhcCCCcccCCCCCCCHHHHHHHcCCHHH
Confidence 4567889999999999988776633 34577888899999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccc
Q psy12891 86 LQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITS 165 (567)
Q Consensus 86 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~ 165 (567)
|++|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+.
T Consensus 74 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~---------~~~~~~~g~t~L~~A~~----------- 133 (351)
T 3utm_A 74 VQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---------VNAMDLWQFTPLHEAAS----------- 133 (351)
T ss_dssp HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCCHHHHHHH-----------
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---------CCCCCCCCCCHHHHHHH-----------
Confidence 9999999999999999999999999999999999999999987 67788999999999998
Q ss_pred cccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHH
Q psy12891 166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245 (567)
Q Consensus 166 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v 245 (567)
.++.+++++|+++|++++..... +.+++++++..+..+.+.+.... .++..++..++.+.+
T Consensus 134 ~~~~~~v~~Ll~~g~~~~~~~~~-g~~~l~~a~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~ 194 (351)
T 3utm_A 134 KNRVEVCSLLLSHGADPTLVNCH-GKSAVDMAPTPELRERLTYEFKG------------------HSLLQAAREADLAKV 194 (351)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHCSSHHHHHHHHHHHHH------------------HHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHcCCCCccccCC-CCcchHHHhhhhhHHHHHhhhcc------------------cHHHHHHHhccHHHH
Confidence 45677799999999999877654 48999999988888877776643 567888888888888
Q ss_pred HHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHH
Q psy12891 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLA 325 (567)
Q Consensus 246 ~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a 325 (567)
+.++..+......+..|.||||+|+..++
T Consensus 195 ~~~l~~~~~~~~~~~~~~t~L~~A~~~~~--------------------------------------------------- 223 (351)
T 3utm_A 195 KKTLALEIINFKQPQSHETALHCAVASLH--------------------------------------------------- 223 (351)
T ss_dssp HHHTTTCCTTCCCTTTCCCHHHHHHHCCS---------------------------------------------------
T ss_pred HHHHHhhcccccCCCCCCCHHHHHHHHhC---------------------------------------------------
Confidence 88887765444344444444444443321
Q ss_pred HHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy12891 326 AEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM 405 (567)
Q Consensus 326 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll 405 (567)
.+..+++++|+++|++++.++..|.||||+|+..++.+++++|++.+.+.
T Consensus 224 --~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---------------------------- 273 (351)
T 3utm_A 224 --PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM---------------------------- 273 (351)
T ss_dssp --TTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------------------------
T ss_pred --ccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC----------------------------
Confidence 04577888888888888777766666666665555555555555443321
Q ss_pred hcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcc
Q psy12891 406 KFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK 477 (567)
Q Consensus 406 ~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 477 (567)
+..+..|.||||+|+..|+.+++++|+++|++++..|..|+||+++| ..+++++|.+.+
T Consensus 274 ---------n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~ 332 (351)
T 3utm_A 274 ---------NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSEST 332 (351)
T ss_dssp ---------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC-
T ss_pred ---------CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcc
Confidence 11112344555555555555555555555555555555555555554 334455554443
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3e-44 Score=330.46 Aligned_cols=266 Identities=24% Similarity=0.250 Sum_probs=238.3
Q ss_pred CChHHHHHHhcCcHHHHHHHHhCCCCCCcc-CCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccch
Q psy12891 229 GWTPLLIACNRGHMELVNTMLNNHARVDVF-DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307 (567)
Q Consensus 229 ~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (567)
|.+||+.|+..|+.+++++|++.|++++.. +.
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~----------------------------------------------- 37 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE----------------------------------------------- 37 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----------------------------------------------
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccCC-----------------------------------------------
Confidence 679999999999999999999999988765 33
Q ss_pred hhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q psy12891 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT 387 (567)
Q Consensus 308 ~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 387 (567)
.|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.|
T Consensus 38 ---------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 107 (285)
T 1wdy_A 38 ---------GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFT 107 (285)
T ss_dssp ---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTCCB
T ss_pred ---------CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCcccCC
Confidence 345677777778889999999999999999999999999999999999999999998877 6778889999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCcccccCC-------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCccCcCCcHHH
Q psy12891 388 CAHIAAMQGSVGVIEELMKFDRSGVISARN-------RVTEATPLQLAAEGGHANVVRVLVKA-GASCTDENKTGFTAVH 459 (567)
Q Consensus 388 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-------~~~~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~ 459 (567)
|||+|+..++.+++++|++.+.+....... +..|.||||+|+..|+.+++++|++. |++++..+..|+||||
T Consensus 108 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~ 187 (285)
T 1wdy_A 108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence 999999999999999999988765443222 55789999999999999999999997 9999999999999999
Q ss_pred HHHHcCc----HHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCcccccccCCCCCC
Q psy12891 460 LAAQNGH----NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS-HVPGTVKSDPPTGASFLGELGSESGM 534 (567)
Q Consensus 460 ~A~~~~~----~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~g~ 534 (567)
+|+..++ .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ .+.+. +.+|..|.
T Consensus 188 ~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-------------~~~~~~g~ 254 (285)
T 1wdy_A 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-------------NDTDSDGK 254 (285)
T ss_dssp HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCT-------------TCCCTTSC
T ss_pred HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCc-------------cccCCCCC
Confidence 9999999 999999999999999999999999999999999999999999 44432 56688999
Q ss_pred CHHHHHHHcCCHHHHHHHHhccCCccccccc
Q psy12891 535 TPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565 (567)
Q Consensus 535 t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~ 565 (567)
||||+|++.|+.+++++|+++ |++|+++|.
T Consensus 255 t~l~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~ 284 (285)
T 1wdy_A 255 TALLLAVELKLKKIAELLCKR-GASTDCGDL 284 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred cHHHHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence 999999999999999999997 999999874
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.6e-43 Score=336.07 Aligned_cols=308 Identities=27% Similarity=0.366 Sum_probs=272.4
Q ss_pred CccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHH
Q psy12891 190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLA 269 (567)
Q Consensus 190 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a 269 (567)
+.++|+.|+..|+.+.++.++.... ..++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 24 ~~~~L~~A~~~g~~~~v~~ll~~~~-----~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 98 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLMALLTPLN-----VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTT-----TTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred cchhHHHHHHcCCHHHHHHHHHhcC-----CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Confidence 3789999999999999999987532 22467888999999999999999999999999999999999999999999
Q ss_pred HHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCc
Q psy12891 270 AEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349 (567)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~ 349 (567)
+..|+.++++ ++.+.+.+++..+..|.|||++|+..|+.+++++|+++|++++..+.
T Consensus 99 ~~~g~~~iv~-----------------------~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~ 155 (351)
T 3utm_A 99 CSYGHYEVTE-----------------------LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155 (351)
T ss_dssp HHTTCHHHHH-----------------------HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred HHCCCHHHHH-----------------------HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence 9999999988 67777888888899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHH
Q psy12891 350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA 429 (567)
Q Consensus 350 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~ 429 (567)
.|.+|+++|+..+..+.+.+.... .++..++..+..+.++.++..... ....+..|.||||+|+
T Consensus 156 ~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~t~L~~A~ 219 (351)
T 3utm_A 156 HGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALEII---NFKQPQSHETALHCAV 219 (351)
T ss_dssp TSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTCCT---TCCCTTTCCCHHHHHH
T ss_pred CCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhhcc---cccCCCCCCCHHHHHH
Confidence 999999999888777777776643 467788899999999998876533 3334557889999999
Q ss_pred Hc---CcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHH
Q psy12891 430 EG---GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVREL 506 (567)
Q Consensus 430 ~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 506 (567)
.. +..+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 220 ~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~L 299 (351)
T 3utm_A 220 ASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299 (351)
T ss_dssp HCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 99 668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCC
Q psy12891 507 LSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558 (567)
Q Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~ 558 (567)
++++++. +..|..|.||+++| +.+++++|.+....
T Consensus 300 l~~gad~-------------~~~~~~g~tal~~a----~~~~~~~l~~~~~~ 334 (351)
T 3utm_A 300 LSYGSDP-------------SIISLQGFTAAQMG----NEAVQQILSESTPM 334 (351)
T ss_dssp HHTTCCT-------------TCCCTTSCCHHHHS----CHHHHHHHHHC---
T ss_pred HHcCCCC-------------CCcCCCCCChhhhh----hHHHHHHHHhcccc
Confidence 9998765 56789999999998 78999999986443
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.5e-43 Score=322.01 Aligned_cols=259 Identities=27% Similarity=0.395 Sum_probs=215.9
Q ss_pred CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCC-CCCCChHHHHHHHhCCHHHHH
Q psy12891 9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLT-TDDGQTPVHAAAKYGNLVTLQ 87 (567)
Q Consensus 9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~ 87 (567)
.|.||||.|++.|+.+.|. +|+++|++++.. +..|+||||+|+..|+.++++
T Consensus 4 ~g~~~L~~A~~~g~~~~v~---------------------------~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 56 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQ---------------------------QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVE 56 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHH---------------------------HHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHcCCHHHHH---------------------------HHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHH
Confidence 5789999999999988443 477888888877 778999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccc
Q psy12891 88 LLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE 167 (567)
Q Consensus 88 ~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~ 167 (567)
+|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++..+..|.|||++|+.. +
T Consensus 57 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A~~~-----------~ 116 (285)
T 1wdy_A 57 LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---------VNECDFYGFTAFMEAAVY-----------G 116 (285)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---------TTCBCTTCCBHHHHHHHT-----------T
T ss_pred HHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCccCcccCCHHHHHHHh-----------C
Confidence 99999999999999999999999999999999999999987 678899999999999984 5
Q ss_pred cHHHHHHHHHcCCCccccc---------cCCCccHHHHHHhcCCHHHHHHHHHh-ccCcchhhhhhcCCCCCChHHHHHH
Q psy12891 168 DQKTVKLLLEAGADVSLQT---------KQNHETAFHYCAVAGNNDVLTGMLEQ-MSGTEISKALNKQTSIGWTPLLIAC 237 (567)
Q Consensus 168 ~~~~v~~Ll~~g~~~~~~~---------~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~L~~A~ 237 (567)
+.+++++|+++|++++... ...+.||||+|+..|+.+++++|++. +.. ++..+..|.||||+|+
T Consensus 117 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------~~~~~~~g~t~l~~a~ 190 (285)
T 1wdy_A 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD------VNACDNMGRNALIHAL 190 (285)
T ss_dssp CHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC------TTCCCTTSCCHHHHHH
T ss_pred CHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC------CCccCCCCCCHHHHHH
Confidence 6777999999999988763 33457788888888888888888775 333 3556677778888888
Q ss_pred hcCc----HHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhh
Q psy12891 238 NRGH----MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDI 313 (567)
Q Consensus 238 ~~~~----~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 313 (567)
..++ .+++++|+++|++++..+..|
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g--------------------------------------------------- 219 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERG--------------------------------------------------- 219 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTS---------------------------------------------------
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCC---------------------------------------------------
Confidence 7777 777788888777777666554
Q ss_pred hhhcCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy12891 314 LTLRKQTPLHLAAEAGQLQVCKLLLD-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376 (567)
Q Consensus 314 ~~~~~~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~ 376 (567)
.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..++.+++++|++++++
T Consensus 220 -----~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~ 278 (285)
T 1wdy_A 220 -----KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278 (285)
T ss_dssp -----CCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred -----CcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence 455556666677888888888 7888888888888999998888888899888888876
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.8e-43 Score=334.39 Aligned_cols=313 Identities=19% Similarity=0.176 Sum_probs=223.1
Q ss_pred ccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHH
Q psy12891 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAA 270 (567)
Q Consensus 191 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~ 270 (567)
..+|..++..|+.+.++.++++..... ...+++.-+...|+++++++++.. ..+..|.||||+|+
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa 102 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHYSLYP----------NPQGYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEA 102 (373)
T ss_dssp -----------------------------------------------------------------------CCCHHHHHH
T ss_pred ccccccccCCccccchhhhhhhhcccc----------CccccCCCCCcccccccccccccc-----CCCCCCccHHHHHh
Confidence 445666667777777777777543221 123455667777888888887654 34677889999998
Q ss_pred HcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhh-hcCCCHHHHHHHcCcHHHHHHHH--------HcC
Q psy12891 271 EHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT-LRKQTPLHLAAEAGQLQVCKLLL--------DLG 341 (567)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~L~~a~~~~~~~~v~~Ll--------~~g 341 (567)
..+. ++++ .+. ...++..+ ..|.||||+|+..|+.+++++|+ +.|
T Consensus 103 ~~~~-~~~~-----------------------~L~--~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g 156 (373)
T 2fo1_E 103 AGSY-AITE-----------------------PIT--RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156 (373)
T ss_dssp HSSS-CCCS-----------------------CCS--TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC
T ss_pred cCCc-hHHH-----------------------Hhc--cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC
Confidence 8554 4444 221 23556666 67899999999999887777665 899
Q ss_pred CCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCC
Q psy12891 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTE 421 (567)
Q Consensus 342 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 421 (567)
++++..|..|.||||+|+..|+.+++++|++.+++ ++..+..|.||||+|+..++.+++++|++.+.........+..|
T Consensus 157 a~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g 235 (373)
T 2fo1_E 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG 235 (373)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred CCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence 99999999999999999999999999999999887 67889999999999999999999999998763223445556689
Q ss_pred CCHHHHHHHcC---cHHHHHHHHHcCCCCCC--------ccCcCCcHHHHHHHcCcHHHHHHHHhcc-cccccccccCCc
Q psy12891 422 ATPLQLAAEGG---HANVVRVLVKAGASCTD--------ENKTGFTAVHLAAQNGHNQVLEEMRSSK-ALNVYSKKLGVT 489 (567)
Q Consensus 422 ~t~L~~A~~~~---~~~~v~~Ll~~g~~~~~--------~~~~g~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t 489 (567)
.||||+|+..+ +.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.+ ++++.+|..|+|
T Consensus 236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T 315 (373)
T 2fo1_E 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT 315 (373)
T ss_dssp CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence 99999999998 89999999999999986 5678999999999999999999999886 899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCc
Q psy12891 490 ALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 559 (567)
Q Consensus 490 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~ 559 (567)
|||+|+..|+.+++++|++++++. +.+|..|.|||++|+.+|+.++|++|+++ |++
T Consensus 316 pL~~A~~~g~~~iv~~Ll~~gad~-------------~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~ 371 (373)
T 2fo1_E 316 PIMLAAQEGRIEVVMYLIQQGASV-------------EAVDATDHTARQLAQANNHHNIVDIFDRC-RPE 371 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCS-------------SCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc-------------cCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence 999999999999999999998765 56789999999999999999999999986 665
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=6e-43 Score=332.12 Aligned_cols=313 Identities=17% Similarity=0.125 Sum_probs=233.2
Q ss_pred cccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHH
Q psy12891 166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245 (567)
Q Consensus 166 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v 245 (567)
.+..+.++.++++...+.+. .+++.-+...|+.+++++++.. .++..|.||||+|+..+. +++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~-----------~~~~~g~t~L~~Aa~~~~-~~~ 109 (373)
T 2fo1_E 47 DGYIKRQRNELQHYSLYPNP-----QGYGNGNDFLGDFNHTNLQIPT-----------EPEPESPIKLHTEAAGSY-AIT 109 (373)
T ss_dssp ---------------------------------------------------------------CCCHHHHHHHSSS-CCC
T ss_pred CccccchhhhhhhhccccCc-----cccCCCCCcccccccccccccc-----------CCCCCCccHHHHHhcCCc-hHH
Confidence 34455567777666554322 3455667778888888887653 456779999999999664 788
Q ss_pred HHHHhCCCCCCccC-CCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHH
Q psy12891 246 NTMLNNHARVDVFD-QEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHL 324 (567)
Q Consensus 246 ~~Ll~~g~~~~~~~-~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~ 324 (567)
++|+. .+++..+ ..|+||||+|+..|+.++++....... ..+.+.+.+++..+..|.||||+
T Consensus 110 ~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~---------------~~ll~~ga~vn~~d~~g~TpL~~ 172 (373)
T 2fo1_E 110 EPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA---------------KECIAAGADVNAMDCDENTPLML 172 (373)
T ss_dssp SCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHH---------------HHHHHTCCCTTCCCTTSCCHHHH
T ss_pred HHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHH---------------HHHHhcCCCCcCCCCCCCCHHHH
Confidence 88765 4677777 789999999999999998882110000 01126788899999999999999
Q ss_pred HHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCC--CCccccCCCCCcHHHHHHHcC---CHH
Q psy12891 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP--SLVTATTKDGNTCAHIAAMQG---SVG 399 (567)
Q Consensus 325 a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~--~~~~~~~~~~~~~l~~a~~~~---~~~ 399 (567)
|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+. ..++..+..|.||||+|+..+ +.+
T Consensus 173 A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~ 252 (373)
T 2fo1_E 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 252 (373)
T ss_dssp HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHH
T ss_pred HHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHH
Confidence 999999999999999999999999999999999999999999999998762 236778999999999999998 899
Q ss_pred HHHHHHhcCCCccc-----ccCCCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCccCcCCcHHHHHHHcCcHHHHHHH
Q psy12891 400 VIEELMKFDRSGVI-----SARNRVTEATPLQLAAEGGHANVVRVLVKAG-ASCTDENKTGFTAVHLAAQNGHNQVLEEM 473 (567)
Q Consensus 400 ~~~~ll~~~~~~~~-----~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 473 (567)
++++|++.+.+... ....+..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|
T Consensus 253 ~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~L 332 (373)
T 2fo1_E 253 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 332 (373)
T ss_dssp HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999877543 2235568999999999999999999999876 99999999999999999999999999999
Q ss_pred HhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy12891 474 RSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512 (567)
Q Consensus 474 l~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 512 (567)
+++|++++.+|..|+|||++|+..|+.+++++|++++++
T Consensus 333 l~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999998764
No 11
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.2e-42 Score=312.95 Aligned_cols=231 Identities=20% Similarity=0.223 Sum_probs=208.4
Q ss_pred hhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHH
Q psy12891 312 DILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHI 391 (567)
Q Consensus 312 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~ 391 (567)
+..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+
T Consensus 53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~ 131 (285)
T 3d9h_A 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFN 131 (285)
T ss_dssp CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHH
T ss_pred cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999877 68889999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHH
Q psy12891 392 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471 (567)
Q Consensus 392 a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~ 471 (567)
|+..++.+++++|++.+.+... +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++++
T Consensus 132 A~~~~~~~~v~~Ll~~g~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~ 207 (285)
T 3d9h_A 132 ACVSGSWDCVNLLLQHGASVQP----ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSC----SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHH
T ss_pred HHHcCHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 9999999999999998876432 235889999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHH
Q psy12891 472 EMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRL 551 (567)
Q Consensus 472 ~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 551 (567)
+|++.|++++. +..|+||||+|+..++.+++++|++++.+. +.+|..|.|||++|+ ++.+++++
T Consensus 208 ~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-------------~~~d~~g~t~l~~A~--~~~~~~~~ 271 (285)
T 3d9h_A 208 KLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADT-------------QAKNAEGKRPVELVP--PESPLAQL 271 (285)
T ss_dssp HHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCGGGGSC--TTSHHHHH
T ss_pred HHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------CCcCCCCCCHHHHhc--CccHHHHH
Confidence 99999999884 888999999999999999999999997764 677899999999999 56799999
Q ss_pred HHhccCCccccc
Q psy12891 552 LLNSAGVQVDAQ 563 (567)
Q Consensus 552 Ll~~~g~~~~~~ 563 (567)
|+++.|+++...
T Consensus 272 Ll~~~~a~l~~~ 283 (285)
T 3d9h_A 272 FLEREGASLPKP 283 (285)
T ss_dssp HHHHC-------
T ss_pred HHHhhccCCCCC
Confidence 999989988654
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.9e-41 Score=304.82 Aligned_cols=258 Identities=19% Similarity=0.259 Sum_probs=204.1
Q ss_pred CCccHHHHHHhcCCHHHHHHHHHhccCc-----chhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCC
Q psy12891 189 NHETAFHYCAVAGNNDVLTGMLEQMSGT-----EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGR 263 (567)
Q Consensus 189 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 263 (567)
.+.|++|+|+..|+.+.+..++...+.. -+...++.++..|.||||+|+..|+.+++++|++.|++++..+..|.
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~ 93 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV 93 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCC
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence 4589999999999987777776654331 12334577889999999999999999999999999999887766555
Q ss_pred CHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCC
Q psy12891 264 SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 343 (567)
Q Consensus 264 t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~ 343 (567)
||||+|+..|+.+++++|+++|++
T Consensus 94 --------------------------------------------------------t~L~~A~~~g~~~~v~~Ll~~ga~ 117 (285)
T 3d9h_A 94 --------------------------------------------------------SPLHEACLGGHLSCVKILLKHGAQ 117 (285)
T ss_dssp --------------------------------------------------------CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred --------------------------------------------------------CHHHHHHHCCcHHHHHHHHHCCCC
Confidence 555566667789999999999999
Q ss_pred CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCC
Q psy12891 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEAT 423 (567)
Q Consensus 344 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t 423 (567)
++..+..|.||||+|+..++.+++++|++.+.+. + .+..|.||||+|+..|+.+++++|++.+.+. ...+..|.|
T Consensus 118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~t 192 (285)
T 3d9h_A 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNI---DHKISHLGT 192 (285)
T ss_dssp SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCT---TCCBTTTBC
T ss_pred CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCC
Confidence 9999999999999999999999999999998774 3 3455999999999999999999999987663 334557889
Q ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHH
Q psy12891 424 PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV 503 (567)
Q Consensus 424 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~ 503 (567)
|||+|+..|+.+++++|+++|++++. +..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+ ++.+++
T Consensus 193 ~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~ 269 (285)
T 3d9h_A 193 PLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLA 269 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHH
T ss_pred HHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHH
Confidence 99999999999999999999999995 889999999999999999999999999999999999999999999 567999
Q ss_pred HHHHhcC
Q psy12891 504 RELLSHV 510 (567)
Q Consensus 504 ~~Ll~~~ 510 (567)
++|+++.
T Consensus 270 ~~Ll~~~ 276 (285)
T 3d9h_A 270 QLFLERE 276 (285)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9999983
No 13
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.1e-40 Score=299.20 Aligned_cols=230 Identities=23% Similarity=0.257 Sum_probs=179.9
Q ss_pred hhhhhhhcCCCHHHHHHHcC-------------cHHHHHHHHHcCCCCCC-cCcCCCCHHHHHHHcCCHHHHHHHHHhCC
Q psy12891 310 VIDILTLRKQTPLHLAAEAG-------------QLQVCKLLLDLGASIDA-TDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375 (567)
Q Consensus 310 ~~~~~~~~~~t~L~~a~~~~-------------~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 375 (567)
+++..+..|.||||+|+..| +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+.
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 81 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 46778899999999999977 89999999999999965 48999999999999999999999999987
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCC
Q psy12891 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGF 455 (567)
Q Consensus 376 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 455 (567)
+ ++..+..|.||||+|+..++.+++++|++.+.. .....+..|.||||+|+..|+.+++++|+++|++++..+..|+
T Consensus 82 ~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~ 158 (253)
T 1yyh_A 82 D-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT--DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGK 158 (253)
T ss_dssp C-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTS--CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSC
T ss_pred C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCC
Confidence 7 678899999999999999999999999998753 2344456899999999999999999999999999999999999
Q ss_pred cHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCC
Q psy12891 456 TAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMT 535 (567)
Q Consensus 456 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t 535 (567)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++. +.+|..|.|
T Consensus 159 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------------~~~d~~g~t 225 (253)
T 1yyh_A 159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR-------------DITDHMDRL 225 (253)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------------TCCCTTCCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-------------cccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999998765 567899999
Q ss_pred HHHHHHHcCCHHHHHHHHhc
Q psy12891 536 PLHLAAYSGNENVVRLLLNS 555 (567)
Q Consensus 536 ~l~~A~~~~~~~~v~~Ll~~ 555 (567)
||++|+++|+.+|+++|.+.
T Consensus 226 pl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 226 PRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp HHHHHHHTTCHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999975
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=298.06 Aligned_cols=258 Identities=18% Similarity=0.213 Sum_probs=217.9
Q ss_pred CCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccch
Q psy12891 228 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307 (567)
Q Consensus 228 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (567)
.|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-------------------------------------------- 37 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHV-------------------------------------------- 37 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCC--------------------------------------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC--------------------------------------------
Confidence 478999999999999999999999998887766554
Q ss_pred hhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q psy12891 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT 387 (567)
Q Consensus 308 ~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 387 (567)
||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+++. + .+..|.|
T Consensus 38 ------------t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t 103 (261)
T 2xai_A 38 ------------SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLAS 103 (261)
T ss_dssp ------------CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTCC
T ss_pred ------------CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C-CCCCCCC
Confidence 4555566667889999999999999999999999999999999999999999988774 2 3556899
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcH
Q psy12891 388 CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 467 (567)
Q Consensus 388 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 467 (567)
|||+|+..++.+++++|++.+.+. ...+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..++.
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~ 179 (261)
T 2xai_A 104 PIHEAARRGHVECVNSLIAYGGNI---DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASE 179 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT---TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCC---CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCH
Confidence 999999999999999999987653 33445788999999999999999999999999996 88999999999999999
Q ss_pred HHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHH
Q psy12891 468 QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547 (567)
Q Consensus 468 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~ 547 (567)
+++++|+++|++++.+|..|+||||+|+..+ +++++|++++..... ...+...+++..|.||+|.|.+....+
T Consensus 180 ~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l-----~~~~~~~~r~~~g~t~l~~~~~~~~p~ 252 (261)
T 2xai_A 180 ELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSL-----MQLCRLRIRKCFGIQQHHKITKLVLPE 252 (261)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCH-----HHHHHHHHHTTSCTTCGGGGGGSSSCH
T ss_pred HHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccH-----HHHHHHHHHHHhchhccccCcccCCcH
Confidence 9999999999999999999999999999655 489999997543211 112334678999999999999998888
Q ss_pred HHHHHHh
Q psy12891 548 VVRLLLN 554 (567)
Q Consensus 548 ~v~~Ll~ 554 (567)
.++-++.
T Consensus 253 ~l~~~l~ 259 (261)
T 2xai_A 253 DLKQFLL 259 (261)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8877664
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.4e-40 Score=294.33 Aligned_cols=207 Identities=24% Similarity=0.227 Sum_probs=183.5
Q ss_pred cccchhhhhhh-hhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q psy12891 303 LVHDHAAVIDI-LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381 (567)
Q Consensus 303 ll~~~~~~~~~-~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~ 381 (567)
.+...+.+++. .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++...+..
T Consensus 41 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 120 (253)
T 1yyh_A 41 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120 (253)
T ss_dssp -----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC
T ss_pred HHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence 44555666544 58899999999999999999999999999999999999999999999999999999999998678889
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461 (567)
Q Consensus 382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 461 (567)
+..|.||||+|+..++.+++++|++.+.+. ...+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 121 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A 197 (253)
T 1yyh_A 121 MHDGTTPLILAARLAVEGMLEDLINSHADV---NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197 (253)
T ss_dssp CTTCCCHHHHHHHHTCSSHHHHHHHTTCCT---TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCcHHHHHHHcChHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 999999999999999999999999987663 34455799999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy12891 462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512 (567)
Q Consensus 462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 512 (567)
+..|+.+++++|+++|++++.+|..|+||+++|+..|+.+++++|....+.
T Consensus 198 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 198 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred HHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999987543
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=9.7e-41 Score=317.37 Aligned_cols=277 Identities=19% Similarity=0.170 Sum_probs=227.0
Q ss_pred hcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCc
Q psy12891 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGF 302 (567)
Q Consensus 223 ~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (567)
+..+..|.||||+|+..|+.++|++|+++|++++..+..|.
T Consensus 14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~--------------------------------------- 54 (364)
T 3ljn_A 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGC--------------------------------------- 54 (364)
T ss_dssp --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC---------------------------------------
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC---------------------------------------
Confidence 45677789999999999999999999999998887765554
Q ss_pred cccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHh----CCCCc
Q psy12891 303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA----HPSLV 378 (567)
Q Consensus 303 ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~~ 378 (567)
||||+|+..|+.+++++|+++|++++. ..|.||||+|+..++.+++++|++. +.. .
T Consensus 55 -----------------t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~ 114 (364)
T 3ljn_A 55 -----------------TALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQM-P 114 (364)
T ss_dssp -----------------CHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCC-H
T ss_pred -----------------cHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCCC-H
Confidence 455556666788899999999986654 4688999999999999999999987 444 3
Q ss_pred cc-----------------cCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHH
Q psy12891 379 TA-----------------TTKDGNTCAHIAAMQG--SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439 (567)
Q Consensus 379 ~~-----------------~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~ 439 (567)
+. .+..|.||||+|+..| +.+++++|++.+.+. ...+..|.||||+|+..|+.+++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~---~~~d~~g~t~L~~A~~~g~~~~v~~ 191 (364)
T 3ljn_A 115 ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP---TAKDKADETPLMRAMEFRNREALDL 191 (364)
T ss_dssp HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHH
Confidence 33 6778999999999999 999999999987663 3445588999999999999999999
Q ss_pred HHHcCCC-----CCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy12891 440 LVKAGAS-----CTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTV 514 (567)
Q Consensus 440 Ll~~g~~-----~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~ 514 (567)
|+++|++ ++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++++...
T Consensus 192 Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~ 271 (364)
T 3ljn_A 192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL 271 (364)
T ss_dssp HHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred HHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchh
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred CCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccc
Q psy12891 515 KSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563 (567)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~ 563 (567)
....+ ...-.....+..+.||++.|+..|+.+.+..||.. ++|....
T Consensus 272 ~~~~~-~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~-~~~~~~~ 318 (364)
T 3ljn_A 272 IQACP-YHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE-KLDEVVR 318 (364)
T ss_dssp HHTCT-TBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHH-HHHHHHT
T ss_pred hhcCc-ccCcccccccccccccchhhhhccCHHHHHHHHHH-HHHHHhh
Confidence 21111 00111134577889999999999999998888886 6555443
No 17
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=293.18 Aligned_cols=222 Identities=21% Similarity=0.225 Sum_probs=203.7
Q ss_pred cCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC
Q psy12891 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 396 (567)
Q Consensus 317 ~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~ 396 (567)
.|+||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+.+ ++..+..|.||||+|+..+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcC
Confidence 478999999999999999999999999999999999999999999999999999999877 6888999999999999999
Q ss_pred CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhc
Q psy12891 397 SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS 476 (567)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 476 (567)
+.+++++|++.+.+... +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++
T Consensus 81 ~~~~v~~Ll~~g~~~~~----~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 81 SWDCVNLLLQHGASVQP----ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp CHHHHHHHHHTTCCSSC----SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 99999999998876432 33588999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Q psy12891 477 KALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556 (567)
Q Consensus 477 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 556 (567)
|++++. +..|.||||+|+..++.+++++|++++++. +.+|..|.|||++|+.++ +++++|+++
T Consensus 157 g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~-------------~~~d~~g~tpl~~A~~~~--~~~~~ll~~- 219 (261)
T 2xai_A 157 GADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADT-------------QAKNAEGKRPVELVPPES--PLAQLFLER- 219 (261)
T ss_dssp TCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCT-------------TCCCTTSCCGGGGSCTTC--THHHHHHHC-
T ss_pred CCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCC-------------CCcCCCCCChhhhccccc--cHHHHHHhc-
Confidence 999885 888999999999999999999999998765 677899999999999655 599999996
Q ss_pred CCcc
Q psy12891 557 GVQV 560 (567)
Q Consensus 557 g~~~ 560 (567)
+.++
T Consensus 220 ~~~~ 223 (261)
T 2xai_A 220 EGPP 223 (261)
T ss_dssp -CCC
T ss_pred cCCc
Confidence 5543
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.3e-40 Score=313.68 Aligned_cols=240 Identities=19% Similarity=0.182 Sum_probs=213.4
Q ss_pred hhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q psy12891 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT 387 (567)
Q Consensus 308 ~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 387 (567)
....+..|..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.++. ..+..|.|
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~g~t 86 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV---HSLWHGQK 86 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC---CCCBTTBC
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---ccccCCCC
Confidence 445566788899999999999999999999999999999999999999999999999999999999884 23458999
Q ss_pred HHHHHHHcCCHHHHHHHHhc----CCCccc--------------ccCCCCCCCCHHHHHHHcC--cHHHHHHHHHcCCCC
Q psy12891 388 CAHIAAMQGSVGVIEELMKF----DRSGVI--------------SARNRVTEATPLQLAAEGG--HANVVRVLVKAGASC 447 (567)
Q Consensus 388 ~l~~a~~~~~~~~~~~ll~~----~~~~~~--------------~~~~~~~~~t~L~~A~~~~--~~~~v~~Ll~~g~~~ 447 (567)
|||+|+..++.+++++|++. +..... ....+..|.||||+|+..| +.+++++|+++|+++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~ 166 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP 166 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence 99999999999999999997 443221 1114457899999999999 999999999999999
Q ss_pred CCccCcCCcHHHHHHHcCcHHHHHHHHhcccc-----cccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCc
Q psy12891 448 TDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL-----NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGA 522 (567)
Q Consensus 448 ~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 522 (567)
+..+..|.||||+|+..|+.+++++|+++|++ ++..|..|+||||+|+..|+.+++++|++++++.
T Consensus 167 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~--------- 237 (364)
T 3ljn_A 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV--------- 237 (364)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT---------
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---------
Confidence 99999999999999999999999999999998 8999999999999999999999999999998765
Q ss_pred ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcccccc
Q psy12891 523 SFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564 (567)
Q Consensus 523 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~ 564 (567)
+.+|..|.||||+|++.|+.++|++|+++ |++++..+
T Consensus 238 ----~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~ 274 (364)
T 3ljn_A 238 ----NMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQA 274 (364)
T ss_dssp ----TCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHT
T ss_pred ----CCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhc
Confidence 66789999999999999999999999997 88876543
No 19
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.6e-39 Score=286.57 Aligned_cols=228 Identities=27% Similarity=0.371 Sum_probs=210.5
Q ss_pred hhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHH
Q psy12891 311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAH 390 (567)
Q Consensus 311 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~ 390 (567)
++..+..|.|||+.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. .+..+..|.||||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLH 82 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHHH
Confidence 455678899999999999999999999999999999999999999999999999999999998877 6778899999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHH
Q psy12891 391 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 470 (567)
Q Consensus 391 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v 470 (567)
+|+..++.+++++|++.+.. .....+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus 83 ~A~~~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 160 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSNGQM--DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIA 160 (237)
T ss_dssp HHHHTTCHHHHHHHHTTTCC--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCC--CcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHH
Confidence 99999999999999998732 2344555789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHH
Q psy12891 471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550 (567)
Q Consensus 471 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~ 550 (567)
++|++.|++++.+|..|.||||+|+..++.+++++|++++++. +.+|..|.|||++|+.+|+...+.
T Consensus 161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-------------~~~d~~g~t~l~~A~~~~~~~~~~ 227 (237)
T 3b7b_A 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV-------------TLKNKEGETPLQCASLNSQVWSAL 227 (237)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-------------TCCCTTSCCHHHHSCTTCHHHHHH
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC-------------CccCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765 567899999999999999987666
Q ss_pred HHHh
Q psy12891 551 LLLN 554 (567)
Q Consensus 551 ~Ll~ 554 (567)
.|++
T Consensus 228 ~l~~ 231 (237)
T 3b7b_A 228 QMSK 231 (237)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.8e-39 Score=290.23 Aligned_cols=232 Identities=23% Similarity=0.276 Sum_probs=207.4
Q ss_pred hhhhhcCCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q psy12891 312 DILTLRKQTPLHLAAEAGQLQVCKLLLD----LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT 387 (567)
Q Consensus 312 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 387 (567)
+..|..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..++.+++++|++.+.+ .+..+..|.|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 81 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQT 81 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCC
Confidence 4568899999999999999999999997 7999999999999999999999999999999998877 6778899999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCcc-cccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CcCCcHHHHHHHcC
Q psy12891 388 CAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNG 465 (567)
Q Consensus 388 ~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~ 465 (567)
|||+|+..++.+++++|++.+.... .....+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 9999999999999999999876322 234455689999999999999999999999999999988 88999999999999
Q ss_pred cHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891 466 HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 545 (567)
Q Consensus 466 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~ 545 (567)
+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++. +.+|..|.|||++|+..|+
T Consensus 162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~tpl~~A~~~~~ 228 (241)
T 1k1a_A 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-------------SLKNCHNDTPLMVARSRRV 228 (241)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-------------TCCCTTSCCTTTTCSSHHH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-------------CCcCCCCCCHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998764 5678999999999999999
Q ss_pred HHHHHHHHhccCC
Q psy12891 546 ENVVRLLLNSAGV 558 (567)
Q Consensus 546 ~~~v~~Ll~~~g~ 558 (567)
.++++.|++. ++
T Consensus 229 ~~i~~~l~~~-~a 240 (241)
T 1k1a_A 229 IDILRGKATR-PA 240 (241)
T ss_dssp HHHHTC-------
T ss_pred HHHHhhhccC-CC
Confidence 9999999985 54
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8.3e-39 Score=285.89 Aligned_cols=231 Identities=26% Similarity=0.309 Sum_probs=199.5
Q ss_pred hcCCCCCChHHHHHHhcCcHHHHHHHHh----CCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCC
Q psy12891 223 NKQTSIGWTPLLIACNRGHMELVNTMLN----NHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298 (567)
Q Consensus 223 ~~~~~~~~~~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (567)
+.++..|.||||+|+..|+.+++++|++ .|.+++..+..|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g------------------------------------ 46 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR------------------------------------ 46 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTS------------------------------------
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccC------------------------------------
Confidence 5678889999999999999999999987 677777666544
Q ss_pred CCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCC--
Q psy12891 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS-- 376 (567)
Q Consensus 299 ~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~-- 376 (567)
.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++.
T Consensus 47 --------------------~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~ 106 (241)
T 1k1a_A 47 --------------------QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106 (241)
T ss_dssp --------------------CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTS
T ss_pred --------------------CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 4556666667889999999999999999999999999999999999999999999872
Q ss_pred -CccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCC
Q psy12891 377 -LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGF 455 (567)
Q Consensus 377 -~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 455 (567)
..+..+..|.||||+|+..++.+++++|++.+.+.. ......|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 107 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 184 (241)
T 1k1a_A 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184 (241)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSC
T ss_pred ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 467788899999999999999999999999876633 22325789999999999999999999999999999999999
Q ss_pred cHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy12891 456 TAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP 511 (567)
Q Consensus 456 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 511 (567)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++.|.++.+
T Consensus 185 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 185 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp BHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred CHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 99999999999999999999999999999999999999999999999999998743
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.3e-38 Score=280.30 Aligned_cols=229 Identities=24% Similarity=0.281 Sum_probs=207.1
Q ss_pred hhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCC
Q psy12891 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG 301 (567)
Q Consensus 222 ~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (567)
++.++..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-------------------------------------- 45 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR-------------------------------------- 45 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC--------------------------------------
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCC--------------------------------------
Confidence 466788899999999999999999999999998887665544
Q ss_pred ccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q psy12891 302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381 (567)
Q Consensus 302 ~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~ 381 (567)
|||+.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++...+..
T Consensus 46 ------------------t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~ 107 (237)
T 3b7b_A 46 ------------------TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107 (237)
T ss_dssp ------------------CHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCC
T ss_pred ------------------CHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccC
Confidence 55566666778999999999999999999999999999999999999999999987668888
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461 (567)
Q Consensus 382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 461 (567)
+..|.||||+|+..++.+++++|++.+.+. ...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 108 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 184 (237)
T 3b7b_A 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDI---NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIA 184 (237)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 999999999999999999999999987663 33455789999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891 462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH 509 (567)
Q Consensus 462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 509 (567)
+..++.+++++|+++|++++.+|..|+||||+|+..++.+.+..|++.
T Consensus 185 ~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~ 232 (237)
T 3b7b_A 185 ARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232 (237)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHH
T ss_pred HHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999777776653
No 23
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=8.3e-38 Score=279.46 Aligned_cols=234 Identities=20% Similarity=0.211 Sum_probs=210.7
Q ss_pred hhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHH
Q psy12891 313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 392 (567)
Q Consensus 313 ~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a 392 (567)
..+..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.++......+..|.|||+.|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 34667889999999999999999999999999999999999999999999999999999999987767777799999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc-HHHHH
Q psy12891 393 AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH-NQVLE 471 (567)
Q Consensus 393 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~ 471 (567)
+..++.+++++|++.+.+.. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .++++
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPS---LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred HHcCCHHHHHHHHHcCCCCc---ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence 99999999999999876643 345578999999999999999999999999999999999999999997665 89999
Q ss_pred HHHhcccccccccc-cCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHH
Q psy12891 472 EMRSSKALNVYSKK-LGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550 (567)
Q Consensus 472 ~Ll~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~ 550 (567)
+|++.|++++..+. .|.||||+|+..++.+++++|++++.+. +..+..|.|||++|++.|+.++++
T Consensus 161 ~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------~~~~~~g~t~l~~A~~~~~~~~v~ 227 (240)
T 3eu9_A 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-------------DAQNIKGESALDLAKQRKNVWMIN 227 (240)
T ss_dssp HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-------------TCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------------CCcCCCCCCHHHHHHHcCcHHHHH
Confidence 99999999999886 8999999999999999999999997764 567889999999999999999999
Q ss_pred HHHhccCCccccc
Q psy12891 551 LLLNSAGVQVDAQ 563 (567)
Q Consensus 551 ~Ll~~~g~~~~~~ 563 (567)
+|+++ |.+.+..
T Consensus 228 ~L~~~-~~~~~~~ 239 (240)
T 3eu9_A 228 HLQEA-RQAKGYD 239 (240)
T ss_dssp HHHHH-C------
T ss_pred HHHHh-hhccCcC
Confidence 99997 8776543
No 24
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.2e-38 Score=278.52 Aligned_cols=226 Identities=21% Similarity=0.216 Sum_probs=208.8
Q ss_pred cCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q psy12891 317 RKQTPLHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQ 395 (567)
Q Consensus 317 ~~~t~L~~a~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~ 395 (567)
.+.+||+.|+..|+.+.+++|++.+.. ++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHc
Confidence 467999999999999999999987644 677889999999999999999999999999876 678899999999999999
Q ss_pred CCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHh
Q psy12891 396 GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475 (567)
Q Consensus 396 ~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 475 (567)
++.+++++|++.+.+. ...+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus 84 ~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 84 GXDEIVKALLVKGAHV---NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp TCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 9999999999987663 3345578999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891 476 SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 555 (567)
Q Consensus 476 ~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 555 (567)
+|++++.+|..|+||||+|+..++.+++++|++++.+. +.+|..|.|||++|++.++.+++++|+++
T Consensus 161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-------------YIENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------------CCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-------------CCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 99999999999999999999999999999999998765 56789999999999999999999999986
Q ss_pred cCCcc
Q psy12891 556 AGVQV 560 (567)
Q Consensus 556 ~g~~~ 560 (567)
|+++
T Consensus 228 -~a~i 231 (231)
T 3aji_A 228 -EASM 231 (231)
T ss_dssp -HHCC
T ss_pred -cccC
Confidence 7764
No 25
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.7e-38 Score=287.78 Aligned_cols=220 Identities=24% Similarity=0.224 Sum_probs=188.8
Q ss_pred hhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcH
Q psy12891 312 DILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS---IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388 (567)
Q Consensus 312 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~ 388 (567)
+..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|++.+++ ++..+..|.||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~tp 81 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAERGGHTA 81 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTSCCH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCH
Confidence 45678899999999999999999999999998 788999999999999999999999999999887 67889999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcc--------------------------------------------cccCCCCCCCCH
Q psy12891 389 AHIAAMQGSVGVIEELMKFDRSGV--------------------------------------------ISARNRVTEATP 424 (567)
Q Consensus 389 l~~a~~~~~~~~~~~ll~~~~~~~--------------------------------------------~~~~~~~~~~t~ 424 (567)
||+|+..++.+++++|++.+.... .....+..|.||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 999999999999999999765421 133456689999
Q ss_pred HHHHHHcCcHHHHHHHHHcCCCCCCccCc-CCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHH
Q psy12891 425 LQLAAEGGHANVVRVLVKAGASCTDENKT-GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV 503 (567)
Q Consensus 425 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~ 503 (567)
||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v 241 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA 241 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHH
Confidence 99999999999999999999999998865 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891 504 RELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 545 (567)
Q Consensus 504 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~ 545 (567)
++|++++++. +.++..|.|||++|.....
T Consensus 242 ~~Ll~~ga~~-------------~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 242 RLLRAHGAPE-------------PEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHHTTCCC-------------CCCC---------------
T ss_pred HHHHHcCCCc-------------CcCCCcccccccccCCccc
Confidence 9999998875 5678999999999987653
No 26
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-39 Score=287.64 Aligned_cols=235 Identities=23% Similarity=0.266 Sum_probs=175.3
Q ss_pred cCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCcc
Q psy12891 224 KQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFL 303 (567)
Q Consensus 224 ~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 303 (567)
.++..+.++|+.|+..|+.++|++|++.|.+.....
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~-------------------------------------------- 41 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA-------------------------------------------- 41 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccc--------------------------------------------
Confidence 456667899999999999999999999887542111
Q ss_pred ccchhhhhhhhhhcCCCHHHHHHHcCcH-HHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q psy12891 304 VHDHAAVIDILTLRKQTPLHLAAEAGQL-QVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT 382 (567)
Q Consensus 304 l~~~~~~~~~~~~~~~t~L~~a~~~~~~-~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~ 382 (567)
...++..+..+.|||+.|+..+.. .++++|++.|+++|..|..|.||||+|+..|+.+++++|++.+++ ....+
T Consensus 42 ----~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~ 116 (269)
T 4b93_B 42 ----EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN-AGARN 116 (269)
T ss_dssp -------------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC-TTCCC
T ss_pred ----cccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC-cCccC
Confidence 111233455677888888877665 488999999999999999999999999999999999999999887 67888
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHH
Q psy12891 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462 (567)
Q Consensus 383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 462 (567)
..|.||++.|+..++.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|+++|..+..|+||||+|+
T Consensus 117 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~---n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~ 193 (269)
T 4b93_B 117 ADQAVPLHLACQQGHFQVVKCLLDSNAKP---NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV 193 (269)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred CCCCCccccccccChHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH
Confidence 99999999999999999999999987764 344568999999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC-HHHHHHHHhcC
Q psy12891 463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ-ADTVRELLSHV 510 (567)
Q Consensus 463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~-~~~~~~Ll~~~ 510 (567)
..|+.++|++|+++|++++.+|..|+||||+|+++++ .+++++|.+.+
T Consensus 194 ~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~ 242 (269)
T 4b93_B 194 IEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCV 242 (269)
T ss_dssp HTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-----
T ss_pred HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988776 34555554443
No 27
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-39 Score=288.67 Aligned_cols=230 Identities=23% Similarity=0.289 Sum_probs=172.7
Q ss_pred hhcCCCHHHHHHHcCcHHHHHHHHHcCCC--------CCCcCcCCCCHHHHHHHcCCH-HHHHHHHHhCCCCccccCCCC
Q psy12891 315 TLRKQTPLHLAAEAGQLQVCKLLLDLGAS--------IDATDDQGQKPIHVAAQNNFP-EVAQIFLRAHPSLVTATTKDG 385 (567)
Q Consensus 315 ~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~~ 385 (567)
|..+.++|+.|+..|+.++|++|++.|++ ++..+..+.|||+.|+..+.. .++++|++.+.+ ++..+.+|
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad-vn~~d~~G 86 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG-VNVTSQDG 86 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCC-TTCCCTTS
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC-CCCcCCCC
Confidence 44566899999999999999999999876 456677899999999987765 578889988877 78899999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcC
Q psy12891 386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNG 465 (567)
Q Consensus 386 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 465 (567)
+||||+|+..|+.+++++|++.+.+.. ..+..|.||+++|+..++.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~---~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g 163 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAG---ARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGG 163 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTT---CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcC---ccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence 999999999999999999999877643 34457899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891 466 HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 545 (567)
Q Consensus 466 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~ 545 (567)
+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++++++. +.+|..|.||||+|+++++
T Consensus 164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-------------~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV-------------QVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS-------------CCCCTTSCCSGGGSCTTCH
T ss_pred CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC-------------CCcCCCCCCHHHHHHhCCc
Confidence 999999999999999999999999999999999999999999998765 6778999999999998876
Q ss_pred -HHHHHHHHhccCCcccc
Q psy12891 546 -ENVVRLLLNSAGVQVDA 562 (567)
Q Consensus 546 -~~~v~~Ll~~~g~~~~~ 562 (567)
.+++++|.. .|++++-
T Consensus 231 i~~lL~~l~~-~~~~~~~ 247 (269)
T 4b93_B 231 IMELLQVVPS-CVASLDD 247 (269)
T ss_dssp HHHHTTC-----------
T ss_pred HHHHHHHHHH-hchhhhh
Confidence 345555554 3655544
No 28
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.9e-37 Score=273.28 Aligned_cols=217 Identities=22% Similarity=0.240 Sum_probs=177.1
Q ss_pred CcHHHHHHHHHcCCCCCCc-CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891 329 GQLQVCKLLLDLGASIDAT-DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407 (567)
Q Consensus 329 ~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~ 407 (567)
|+.+++++|+++|++++.. +..|.||||+|+..++.+++++|++.+.+ .+..+..|.||||+|+..++.+++++|++.
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 5667778888888887765 67788888888888888888888887666 566777888888888888888888888876
Q ss_pred CCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccC
Q psy12891 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLG 487 (567)
Q Consensus 408 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g 487 (567)
+.. .....+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 81 ~~~--~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 158 (223)
T 2f8y_A 81 RAT--DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158 (223)
T ss_dssp TTS--CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred CCC--CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 543 233445578889999999999999999999999999888889999999999999999999999999888888889
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12891 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562 (567)
Q Consensus 488 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~ 562 (567)
.||||+|+..++.+++++|++++++. +.+|..|.|||++|++.|+.+++++|+++ |+....
T Consensus 159 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~~~~i~~~L~~~-g~~~~~ 219 (223)
T 2f8y_A 159 ETPLFLAAREGSYETAKVLLDHFANR-------------DITDHMDRLPRDIAQERMHHDIVRLLDEY-NLVRSP 219 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCT-------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCSSCC
T ss_pred cCHHHHHHHcCCHHHHHHHHHcCCCC-------------ccccccCCCHHHHHHHhcchHHHHHHHHc-CCCccc
Confidence 99999999999999999999887654 55678889999999999999999999985 876554
No 29
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4.1e-37 Score=272.24 Aligned_cols=221 Identities=23% Similarity=0.232 Sum_probs=198.4
Q ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCcCCCCHHHHHHHcCCHHHHHHHHHhC--CCCccccCCCCCcHHHHHHH
Q psy12891 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDA-TDDQGQKPIHVAAQNNFPEVAQIFLRAH--PSLVTATTKDGNTCAHIAAM 394 (567)
Q Consensus 318 ~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~--~~~~~~~~~~~~~~l~~a~~ 394 (567)
|.|||+.|+..|+.+++++|++.|.++.. .+..|.||||+|+..++.+++++|++.+ .+.....+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 67999999999999999999999988765 8899999999999999999999999998 55333378899999999999
Q ss_pred cCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHH
Q psy12891 395 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474 (567)
Q Consensus 395 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 474 (567)
.++.+++++|++.+.... ....+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HCCHHHHHHHHSSSSCCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcc-cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999999999874332 3344557999999999999999999999999999999999999999999999999999999
Q ss_pred hcc-cccccccccCCcHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy12891 475 SSK-ALNVYSKKLGVTALHVAAYFGQADTVRELL-SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL 552 (567)
Q Consensus 475 ~~~-~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~L 552 (567)
+.| ++++.+|..|+||||+|+..|+.+++++|+ +++.+. +.+|..|.|||++|+.. +++++|
T Consensus 161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~-------------~~~~~~g~t~l~~A~~~---~~~~~l 224 (228)
T 2dzn_A 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-------------DLVDNKGAKAEDVALNE---QVKKFF 224 (228)
T ss_dssp TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-------------CCBCTTSCBGGGGCSST---THHHHH
T ss_pred hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC-------------CccCCCCCcHHHHHHHH---HHHHHH
Confidence 999 899999999999999999999999999999 777654 66789999999999654 688888
Q ss_pred Hhc
Q psy12891 553 LNS 555 (567)
Q Consensus 553 l~~ 555 (567)
+++
T Consensus 225 ~~~ 227 (228)
T 2dzn_A 225 LNN 227 (228)
T ss_dssp HTT
T ss_pred Hhc
Confidence 764
No 30
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.7e-38 Score=289.95 Aligned_cols=252 Identities=23% Similarity=0.219 Sum_probs=174.8
Q ss_pred cCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHH
Q psy12891 187 KQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSAL 266 (567)
Q Consensus 187 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l 266 (567)
+..|.||||+|+..|+.+++++|++.+..... ++.++..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY---LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG---GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 45568899999999999999999888765322 467788888999999999999999999998888887766555554
Q ss_pred HHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCC
Q psy12891 267 HLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 346 (567)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~ 346 (567)
++|+..|+.+++++|+++|++...
T Consensus 83 --------------------------------------------------------~~A~~~~~~~~v~~Ll~~~~~~~~ 106 (282)
T 1oy3_D 83 --------------------------------------------------------HLACRVRAHTCACVLLQPRPSHPR 106 (282)
T ss_dssp --------------------------------------------------------HHHTTTTCHHHHHHHSSSCCSSCC
T ss_pred --------------------------------------------------------HHHHHcCCcchhHhhhccCCCCch
Confidence 445555677788888877766432
Q ss_pred c-------------CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc
Q psy12891 347 T-------------DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVI 413 (567)
Q Consensus 347 ~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~ 413 (567)
. ...+.++++.+...+.......++......++..+..|.||||+|+..|+.+++++|++.+.+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~- 185 (282)
T 1oy3_D 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN- 185 (282)
T ss_dssp CC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-
T ss_pred hhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence 2 12344555555544433333333322223366778899999999999999999999999887633
Q ss_pred ccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHH
Q psy12891 414 SARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHV 493 (567)
Q Consensus 414 ~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~ 493 (567)
......|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.|||++
T Consensus 186 -~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~ 264 (282)
T 1oy3_D 186 -KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264 (282)
T ss_dssp -CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------
T ss_pred -CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccc
Confidence 3333358999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC
Q psy12891 494 AAYFGQ 499 (567)
Q Consensus 494 A~~~~~ 499 (567)
|....+
T Consensus 265 a~~~~~ 270 (282)
T 1oy3_D 265 SGSDSD 270 (282)
T ss_dssp ------
T ss_pred cCCccc
Confidence 986553
No 31
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.2e-37 Score=274.51 Aligned_cols=227 Identities=22% Similarity=0.213 Sum_probs=208.9
Q ss_pred CCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHH
Q psy12891 260 QEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 339 (567)
Q Consensus 260 ~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~ 339 (567)
..+.+||+.|+..|..+.++ .++......++..+..|.|||++|+..|+.+++++|++
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~----------------------~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 61 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELK----------------------ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHH----------------------HHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred ccccchHHHHHHhCCHHHHH----------------------HHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 35678999999999988887 45555566677888999999999999999999999999
Q ss_pred cCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCC
Q psy12891 340 LGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRV 419 (567)
Q Consensus 340 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~ 419 (567)
+|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..++.+++++|++.+.+. ...+.
T Consensus 62 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~ 137 (231)
T 3aji_A 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP---DAKDH 137 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCT
T ss_pred hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCC
Confidence 9999999999999999999999999999999999877 6788999999999999999999999999987663 34455
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC
Q psy12891 420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ 499 (567)
Q Consensus 420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 499 (567)
.|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..++.+++++|+++|++++.+|..|+|||++|+..++
T Consensus 138 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 217 (231)
T 3aji_A 138 YDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG 217 (231)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC
Q psy12891 500 ADTVRELLSHVPG 512 (567)
Q Consensus 500 ~~~~~~Ll~~~~~ 512 (567)
.+++++|.+++++
T Consensus 218 ~~i~~lL~~~~a~ 230 (231)
T 3aji_A 218 LILKRLAEGEEAS 230 (231)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHcccccc
Confidence 9999999987553
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=7.1e-38 Score=285.38 Aligned_cols=233 Identities=17% Similarity=0.216 Sum_probs=199.7
Q ss_pred hHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhh
Q psy12891 50 DRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI 129 (567)
Q Consensus 50 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~ 129 (567)
.++.++|.+. +++.+|.+|+||||+|+..|+.++|++|+++|++++.++ |.||||+|+..|+.+++++|+++|++
T Consensus 13 ~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~- 87 (285)
T 3kea_A 13 KQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLD- 87 (285)
T ss_dssp HHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCC-
T ss_pred HHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence 4455555554 688999999999999999999999999999999998884 89999999999999999999999988
Q ss_pred hhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHH
Q psy12891 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGM 209 (567)
Q Consensus 130 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L 209 (567)
++.++..|.||||+|+. .++.+++++|+++|++++..+..++.||||+|+..|+.+++++|
T Consensus 88 --------~~~~d~~g~t~L~~A~~-----------~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L 148 (285)
T 3kea_A 88 --------DSQFDDKGNTALYYAVD-----------SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF 148 (285)
T ss_dssp --------TTCCCTTSCCHHHHHHH-----------TTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred --------CCCcCCCCCcHHHHHHH-----------cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 67889999999999998 45677799999999999977766547999999999999999999
Q ss_pred HHhccCcchhhhhhcCCC-CCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeecccccccccc
Q psy12891 210 LEQMSGTEISKALNKQTS-IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288 (567)
Q Consensus 210 l~~~~~~~~~~~~~~~~~-~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~ 288 (567)
++.++.. .+. .|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 149 l~~g~~~--------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~----------------------- 197 (285)
T 3kea_A 149 LSEIPST--------FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIP----------------------- 197 (285)
T ss_dssp HTTSCTT--------CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCT-----------------------
T ss_pred HhCCCcc--------ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCCh-----------------------
Confidence 9987643 222 78999999999999999999999998888777665543
Q ss_pred ccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHH
Q psy12891 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 368 (567)
Q Consensus 289 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 368 (567)
||++|+..|+.+++++|+++|++++..+. .|+..++.++++
T Consensus 198 --------------------------------~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~ 238 (285)
T 3kea_A 198 --------------------------------DIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAK 238 (285)
T ss_dssp --------------------------------THHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHH
T ss_pred --------------------------------HHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHH
Confidence 26666667788999999999999988873 557788999999
Q ss_pred HHHHhCCC
Q psy12891 369 IFLRAHPS 376 (567)
Q Consensus 369 ~Ll~~~~~ 376 (567)
+|++++.+
T Consensus 239 ~Ll~~g~~ 246 (285)
T 3kea_A 239 MIIEKHVE 246 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHcCCC
Confidence 99988755
No 33
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3.3e-36 Score=266.44 Aligned_cols=205 Identities=22% Similarity=0.232 Sum_probs=189.3
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHH
Q psy12891 351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAE 430 (567)
Q Consensus 351 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~ 430 (567)
|.||||.|+..|+.+++++|++.++......+..|.||||+|+..++.+++++|++.+.+.......+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 68999999999999999999999988777789999999999999999999999999986655555466789999999999
Q ss_pred cCcHHHHHHHHHcC--CCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHh
Q psy12891 431 GGHANVVRVLVKAG--ASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS 508 (567)
Q Consensus 431 ~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 508 (567)
.|+.+++++|+++| ++++..+..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999999 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891 509 HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567 (567)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~ 567 (567)
+++... +.+|..|.||||+|++.|+.+++++|+++.|+|++.+|.+|
T Consensus 162 ~g~~~~------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g 208 (228)
T 2dzn_A 162 LGKSAV------------NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208 (228)
T ss_dssp TTCCCS------------CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS
T ss_pred cCcccc------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Confidence 984332 56689999999999999999999999955699999999876
No 34
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2e-37 Score=282.41 Aligned_cols=240 Identities=18% Similarity=0.198 Sum_probs=206.7
Q ss_pred HHhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCee
Q psy12891 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLK 276 (567)
Q Consensus 197 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~ 276 (567)
++...+.+.+..++... .++.++..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 6 ~i~~~~~~~v~~lL~~~-------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------------- 61 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK-------DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE----------------- 61 (285)
T ss_dssp TGGGCCHHHHHHHHHST-------TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT-----------------
T ss_pred HHHhcCHHHHHHHHHhC-------CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC-----------------
Confidence 34555655555555543 247788889999999999999999999999888776542
Q ss_pred eeccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHH
Q psy12891 277 VSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIH 356 (567)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 356 (567)
|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 62 -----------------------------------------g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~ 100 (285)
T 3kea_A 62 -----------------------------------------NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY 100 (285)
T ss_dssp -----------------------------------------TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred -----------------------------------------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence 446777777788899999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhCCCCccccCCCC-CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHH
Q psy12891 357 VAAQNNFPEVAQIFLRAHPSLVTATTKDG-NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435 (567)
Q Consensus 357 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ 435 (567)
+|+..++.+++++|++.+++ ++..+..| .||||+|+..++.+++++|++.+...... ..|.||||+|+..|+.+
T Consensus 101 ~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 101 YAVDSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL----AILLSCIHITIKNGHVD 175 (285)
T ss_dssp HHHHTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC----STHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc----cCCccHHHHHHHcChHH
Confidence 99999999999999999877 67888888 79999999999999999999987654211 27889999999999999
Q ss_pred HHHHHHHcCCCCCCccCcCCcH-HHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891 436 VVRVLVKAGASCTDENKTGFTA-VHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 513 (567)
Q Consensus 436 ~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~ 513 (567)
++++|+++|++++.++..|+|| ||+|+..|+.+++++|+++|++++.++. .|+..|+.+++++|++++.+.
T Consensus 176 ~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp HHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999998 9999999999999999999999998873 567799999999999987654
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.2e-35 Score=261.85 Aligned_cols=208 Identities=24% Similarity=0.219 Sum_probs=192.8
Q ss_pred cccchhhhhhhh-hhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcccc
Q psy12891 303 LVHDHAAVIDIL-TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381 (567)
Q Consensus 303 ll~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~ 381 (567)
.+.+.+.+++.. +..|.|||++|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.++...+..
T Consensus 9 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 88 (223)
T 2f8y_A 9 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 88 (223)
T ss_dssp TTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC
T ss_pred HHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence 445556666554 7899999999999999999999999999999999999999999999999999999999998778889
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461 (567)
Q Consensus 382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 461 (567)
+..|.||||+|+..++.+++++|++.+.+. ...+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 89 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 165 (223)
T 2f8y_A 89 MHDGTTPLILAARLAVEGMLEDLINSHADV---NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 165 (223)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCCcHHHHHHHhCcHHHHHHHHHcCCCC---cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHH
Confidence 999999999999999999999999987663 33445799999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891 462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 513 (567)
Q Consensus 462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~ 513 (567)
+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++++...
T Consensus 166 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 166 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred HHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999999999999999999987653
No 36
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-37 Score=287.20 Aligned_cols=246 Identities=23% Similarity=0.312 Sum_probs=174.2
Q ss_pred ChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchhh
Q psy12891 230 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAA 309 (567)
Q Consensus 230 ~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 309 (567)
.|||+.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++++ ++.+.+.
T Consensus 41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~-----------------------~Ll~~ga 97 (299)
T 1s70_B 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVK-----------------------FLVENGA 97 (299)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHH-----------------------HHHHTTC
T ss_pred ccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHH-----------------------HHHHCCC
Confidence 34444444444444444444444444444444444444444444444443 3333334
Q ss_pred hhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHH
Q psy12891 310 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 389 (567)
Q Consensus 310 ~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l 389 (567)
+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+..++++.++.............+.+++
T Consensus 98 ~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 177 (299)
T 1s70_B 98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177 (299)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH
Confidence 44444445667777777788899999999999999999999999999999999999999888765543332222222222
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHH
Q psy12891 390 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV 469 (567)
Q Consensus 390 ~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 469 (567)
...+..++..+.. .....+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus 178 --------~~~~~~~l~~~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~ 247 (299)
T 1s70_B 178 --------LRDARQWLNSGHI--NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEA 247 (299)
T ss_dssp --------HHHHHHHHHHTCC--CCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred --------HHHHHHHHhccCc--chhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHH
Confidence 2334445544433 233445578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891 470 LEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH 509 (567)
Q Consensus 470 v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 509 (567)
+++|+++|++++.+|..|+||||+|+. +..+.++.|++.
T Consensus 248 v~~Ll~~gad~~~~d~~g~t~l~~A~~-~~~~~l~~l~~~ 286 (299)
T 1s70_B 248 CRILVENLCDMEAVNKVGQTAFDVADE-DILGYLEELQKK 286 (299)
T ss_dssp HHHHHHTTCCTTCCCTTSCCTTTSCCS-GGGHHHHHHHHH
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999999999999975 456666666665
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=265.03 Aligned_cols=229 Identities=20% Similarity=0.215 Sum_probs=147.9
Q ss_pred cCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCcc
Q psy12891 224 KQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFL 303 (567)
Q Consensus 224 ~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 303 (567)
..+..+.++|+.|+..|+.+++++|++.|++++..+..|.|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t--------------------------------------- 44 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVT--------------------------------------- 44 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC---------------------------------------
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCC---------------------------------------
Confidence 34555666777777777777777777766666655544333
Q ss_pred ccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCc-CCCCHHHHHHHcCCHHHHHHHHHhCCCCccccC
Q psy12891 304 VHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD-QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT 382 (567)
Q Consensus 304 l~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~ 382 (567)
||+.|+..|+.+++++|+++|++++..+. .|.|||++|+..++.+++++|++.+.+ .+..+
T Consensus 45 -----------------~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~ 106 (240)
T 3eu9_A 45 -----------------LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLID 106 (240)
T ss_dssp -----------------HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCC
T ss_pred -----------------HHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC-CcccC
Confidence 33444444556666666666666554433 366666666666666666666665544 34555
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCc-HHHHHHHHHcCCCCCCccC-cCCcHHHH
Q psy12891 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH-ANVVRVLVKAGASCTDENK-TGFTAVHL 460 (567)
Q Consensus 383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~-~g~t~l~~ 460 (567)
..|.||||.|+..++.+++++|++.+.+. ...+..|.||||+|+..++ .+++++|++.|++++..+. .|.||||+
T Consensus 107 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~ 183 (240)
T 3eu9_A 107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDV---DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183 (240)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHhcCCCc---cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHH
Confidence 56666666666666666666666654432 2333456677777775544 6777777777777777665 77777777
Q ss_pred HHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy12891 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512 (567)
Q Consensus 461 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 512 (567)
|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|++.++.
T Consensus 184 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 7777777777777777777777777777777777777777777777776554
No 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.4e-34 Score=256.60 Aligned_cols=207 Identities=26% Similarity=0.320 Sum_probs=163.4
Q ss_pred cCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q psy12891 317 RKQTPLHLAAEAGQLQVCKLLLDL-GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQ 395 (567)
Q Consensus 317 ~~~t~L~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~ 395 (567)
.|.||||.|+..|+.+++++|++. |++++..+..|.||||+|+..++.+++++|++.+++....
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--------------- 66 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE--------------- 66 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC---------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc---------------
Confidence 467888888888888888888877 8888888888888888888888888888888776552110
Q ss_pred CCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccC-------------cCCcHHHHHH
Q psy12891 396 GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK-------------TGFTAVHLAA 462 (567)
Q Consensus 396 ~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------------~g~t~l~~A~ 462 (567)
.....+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+
T Consensus 67 -----------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 129 (232)
T 2rfa_A 67 -----------------PMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129 (232)
T ss_dssp -----------------CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHH
T ss_pred -----------------cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHH
Confidence 1122334567777777777777788888877777776654 7999999999
Q ss_pred HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHH----HHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHH
Q psy12891 463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV----RELLSHVPGTVKSDPPTGASFLGELGSESGMTPLH 538 (567)
Q Consensus 463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~----~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~ 538 (567)
..|+.+++++|+++|++++.+|..|+||||+|+..++.+++ ++|++++++..... +.+.+|..|.||||
T Consensus 130 ~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~-------~~~~~~~~g~tpl~ 202 (232)
T 2rfa_A 130 CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS-------LELVPNNQGLTPFK 202 (232)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCC-------GGGCCCTTSCCHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhh-------hhccCCCCCCCHHH
Confidence 99999999999999999999999999999999999999988 99999887543111 22467899999999
Q ss_pred HHHHcCCHHHHHHHHhccCCccccc
Q psy12891 539 LAAYSGNENVVRLLLNSAGVQVDAQ 563 (567)
Q Consensus 539 ~A~~~~~~~~v~~Ll~~~g~~~~~~ 563 (567)
+|++.|+.++|++|+++ |.++...
T Consensus 203 ~A~~~g~~~~v~~Ll~~-g~~~~~~ 226 (232)
T 2rfa_A 203 LAGVEGNIVMFQHLMQK-RKHIAAA 226 (232)
T ss_dssp HHHHHTCHHHHHHHHHH-HHHC---
T ss_pred HHHHcCCHHHHHHHHhc-Cccchhh
Confidence 99999999999999997 7766544
No 39
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.7e-34 Score=255.90 Aligned_cols=188 Identities=19% Similarity=0.254 Sum_probs=160.2
Q ss_pred cccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCC-----CCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Q psy12891 303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI-----DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377 (567)
Q Consensus 303 ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~-----~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 377 (567)
++...+.+++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++|++.+.+.
T Consensus 22 Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 101 (232)
T 2rfa_A 22 LLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101 (232)
T ss_dssp HHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 333448889999999999999999999999999999999987 667788999999999999999999999987763
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcH
Q psy12891 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTA 457 (567)
Q Consensus 378 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 457 (567)
+..+.. +.+. ......+..|.||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus 102 -~~~~~~--~~~~---------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 102 -SARATG--SVFH---------------------YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp -TCCCCS--GGGS---------------------CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred -CcccCC--ccee---------------------ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 333221 1110 0122344578999999999999999999999999999999999999
Q ss_pred HHHHHHcCcHHHH----HHHHhccccc------ccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy12891 458 VHLAAQNGHNQVL----EEMRSSKALN------VYSKKLGVTALHVAAYFGQADTVRELLSHVPGTV 514 (567)
Q Consensus 458 l~~A~~~~~~~~v----~~Ll~~~~~~------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~ 514 (567)
||+|+..++.+++ ++|+++|+++ +.+|..|+||||+|+..|+.+++++|+++++...
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 9999999999988 9999999987 5789999999999999999999999999876543
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=3.9e-36 Score=267.05 Aligned_cols=219 Identities=21% Similarity=0.172 Sum_probs=191.6
Q ss_pred hhhhcCCCHHHHHHHcCcHHHHHHHHHcCC----CCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcH
Q psy12891 313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGA----SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388 (567)
Q Consensus 313 ~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~ 388 (567)
..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence 457789999999999999999999998765 7899999999999999999999999999998877 67889999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCc---ccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccC-cCCcHHHHHHHc
Q psy12891 389 AHIAAMQGSVGVIEELMKFDRSG---VISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK-TGFTAVHLAAQN 464 (567)
Q Consensus 389 l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~ 464 (567)
||+|+..++.+++++|++.+... ......+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~ 161 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence 99999999999999999987653 23455666899999999999999999999999999999997 999999999999
Q ss_pred CcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHc
Q psy12891 465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS 543 (567)
Q Consensus 465 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~ 543 (567)
|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++++... ..++..|.||.+.+...
T Consensus 162 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~-----------~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ-----------MLPESEDEESYDTESEF 229 (236)
T ss_dssp TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS-----------SCCCCCTTTCCCCC---
T ss_pred CCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh-----------cCCccchHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999876532 45677788887665443
No 41
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.4e-35 Score=270.76 Aligned_cols=249 Identities=25% Similarity=0.279 Sum_probs=178.5
Q ss_pred CCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhccccccccc
Q psy12891 68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGAS 147 (567)
Q Consensus 68 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t 147 (567)
.+|.||||.||..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++ ++..+..|.|
T Consensus 38 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------~~~~~~~g~t 108 (299)
T 1s70_B 38 FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---------INQPDNEGWI 108 (299)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTSCC
T ss_pred cCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---------CCCCCCCCCc
Confidence 3567899999999999999999999999999999999999999999999999999998877 6777888999
Q ss_pred HHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhccCcchhhhhhcCCC
Q psy12891 148 ALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTS 227 (567)
Q Consensus 148 ~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~ 227 (567)
|||+|+.. ++.+++++|+++|++++..+.. |.|||++|+..++.+++++++....... +....
T Consensus 109 pL~~A~~~-----------g~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~ll~~~~~~~-----~~~~~ 171 (299)
T 1s70_B 109 PLHAAASC-----------GYLDIAEYLISQGAHVGAVNSE-GDTPLDIAEEEAMEELLQNEVNRQGVDI-----EAARK 171 (299)
T ss_dssp HHHHHHHH-----------TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHCCSHHHHHHHHHHHHHHTCCH-----HHHHH
T ss_pred HHHHHHHc-----------CCHHHHHHHHhCCCCCCCcCCC-CCCHHHHHHhcchHHHHHHHHhhcCCCc-----hhhhh
Confidence 99999884 4566789999999888866544 4888888888888888888876532110 00000
Q ss_pred CCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccch
Q psy12891 228 IGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307 (567)
Q Consensus 228 ~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (567)
.+.+++ ...++.++..+.....
T Consensus 172 ~~~~~~--------~~~~~~~l~~~~~~~~-------------------------------------------------- 193 (299)
T 1s70_B 172 EEERIM--------LRDARQWLNSGHINDV-------------------------------------------------- 193 (299)
T ss_dssp HHHHHH--------HHHHHHHHHHTCCCCC--------------------------------------------------
T ss_pred hhhhHH--------HHHHHHHHhccCcchh--------------------------------------------------
Confidence 011111 1222333333222111
Q ss_pred hhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc
Q psy12891 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNT 387 (567)
Q Consensus 308 ~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 387 (567)
..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.+++ ++..+..|.|
T Consensus 194 -----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t 267 (299)
T 1s70_B 194 -----RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQT 267 (299)
T ss_dssp -----CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred -----hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC-CCCcCCCCCC
Confidence 1123466777777777788888888888888888888888888888888888888888887766 5677788888
Q ss_pred HHHHHHHcCCHHHHHHHHhc
Q psy12891 388 CAHIAAMQGSVGVIEELMKF 407 (567)
Q Consensus 388 ~l~~a~~~~~~~~~~~ll~~ 407 (567)
|+++|+.. ..+.++.+++.
T Consensus 268 ~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 268 AFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp TTTSCCSG-GGHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 88887553 44555555443
No 42
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-35 Score=273.50 Aligned_cols=232 Identities=16% Similarity=0.178 Sum_probs=186.7
Q ss_pred cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhh------------------------HhhhcCchHHHHHHHhcCC
Q psy12891 6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNI------------------------AARVKDGDRCALMLLKSGA 61 (567)
Q Consensus 6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~------------------------~a~~~~~~~~~~~Ll~~g~ 61 (567)
.+..|.|+++ |+.+ ++++|+++|++++.... .+......+++++|++.|+
T Consensus 48 ~~~~g~~~~~-----g~~~-~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~ 121 (327)
T 1sw6_A 48 ALPSPVVNDN-----EQKM-KLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQL 121 (327)
T ss_dssp CBCCCCCCCH-----HHHH-HHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCC
T ss_pred CCCCCCcccC-----chhH-HHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCC
Confidence 4578899987 8887 66779999998886432 2344445688999999999
Q ss_pred CCCC-CCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCc---hhHHHHHHHhhhhhhhhHHhhh
Q psy12891 62 GPNL-TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK---AEVVDLLIQFVQNISQEKVLEY 137 (567)
Q Consensus 62 ~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~---~~iv~~Ll~~~~~~~~~~~~~~ 137 (567)
++|. ++.+|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+ .++++.|++++.. .
T Consensus 122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~--------~ 193 (327)
T 1sw6_A 122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP--------C 193 (327)
T ss_dssp CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG--------G
T ss_pred CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc--------c
Confidence 9999 89999999999999999999999999999999999999999999999999 8999999998743 1
Q ss_pred hcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHc--------------------CCCccccccCCCccHHHHH
Q psy12891 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA--------------------GADVSLQTKQNHETAFHYC 197 (567)
Q Consensus 138 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~--------------------g~~~~~~~~~~~~~~l~~a 197 (567)
++.++..|.||||+|+..+.. .++.+++++|++. |++++..+.. +.||||+|
T Consensus 194 ~~~~d~~g~tpLh~A~~~~~~-------~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~-g~t~L~~a 265 (327)
T 1sw6_A 194 LILEDSMNRTILHHIIITSGM-------TGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE-RKDSILEN 265 (327)
T ss_dssp GGEECTTCCCHHHHHHHHHTS-------TTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHccc-------cccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc-CCChhHHH
Confidence 788999999999999983321 3567779999887 8888876654 59999999
Q ss_pred HhcCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcC
Q psy12891 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273 (567)
Q Consensus 198 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~ 273 (567)
+. +++|++.. ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 266 ~~------~~~Ll~~~--------~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 266 LD------LKWIIANM--------LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp CS------HHHHHHHT--------TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HH------HHHHHHhC--------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 85 88888872 5788999999999999999999999999999999999999999999998654
No 43
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-36 Score=280.80 Aligned_cols=271 Identities=14% Similarity=0.120 Sum_probs=199.4
Q ss_pred cCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeec
Q psy12891 200 AGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279 (567)
Q Consensus 200 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~ 279 (567)
....+++++|++.+.+. +..+..|.++++ |+.+++++|+++|++++. +++++|+........
T Consensus 29 ~~~~dlv~~ll~~ga~i------~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~~~~~~- 90 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKI------MKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNNDSSNRN- 90 (327)
T ss_dssp ECCTTCCCSTTTSSCCC------EECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------
T ss_pred hhcCchHHHHhhCCccc------ccCCCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhccccccc-
Confidence 57778888998887654 567788888876 889999999999987543 345555443100000
Q ss_pred cccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCcCCCCHHHHH
Q psy12891 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA-TDDQGQKPIHVA 358 (567)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A 358 (567)
........+.++.++..+..+++++|++.|++++. .+..|.||||+|
T Consensus 91 --------------------------------~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~A 138 (327)
T 1sw6_A 91 --------------------------------SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWL 138 (327)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHH
T ss_pred --------------------------------ccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHH
Confidence 00001122446788888889999999999999999 899999999999
Q ss_pred HHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC---HHHHHHHHhcCCCcccccCCCCCCCCHHHHHHH----c
Q psy12891 359 AQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS---VGVIEELMKFDRSGVISARNRVTEATPLQLAAE----G 431 (567)
Q Consensus 359 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~----~ 431 (567)
+..|+.+++++|++.+++ ++..+..|+||||+|+..|+ .++++.|++.+.. .....+..|.||||+|+. .
T Consensus 139 a~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~--~~~~~d~~g~tpLh~A~~~~~~~ 215 (327)
T 1sw6_A 139 TSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP--CLILEDSMNRTILHHIIITSGMT 215 (327)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG--GGGEECTTCCCHHHHHHHHHTST
T ss_pred HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc--cccCCCCCCCCHHHHHHHHcccc
Confidence 999999999999999877 68899999999999999988 5667777765432 244556689999999999 8
Q ss_pred CcHHHHHHHHHc--------------------CCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHH
Q psy12891 432 GHANVVRVLVKA--------------------GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTAL 491 (567)
Q Consensus 432 ~~~~~v~~Ll~~--------------------g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l 491 (567)
|+.+++++|++. |++++..+..|.||||+|+. +++|+++ +++.+|..|+|||
T Consensus 216 g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpL 287 (327)
T 1sw6_A 216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCL 287 (327)
T ss_dssp TCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHH
T ss_pred ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHH
Confidence 999999999987 89999999999999999986 8999998 5888999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcC
Q psy12891 492 HVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544 (567)
Q Consensus 492 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~ 544 (567)
|+|+..|+.+++++|++++++. +.+|..|.||||+|+++|
T Consensus 288 h~A~~~g~~~~v~~Ll~~Gad~-------------~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 288 NIAARLGNISIVDALLDYGADP-------------FIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHCCHHHHHHHHHTTCCT-------------TCCCTTSCCGGGGTCC--
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-------------cccCCCCCCHHHHHHhcC
Confidence 9999999999999999998865 677899999999998765
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=6.7e-33 Score=239.84 Aligned_cols=192 Identities=20% Similarity=0.237 Sum_probs=178.2
Q ss_pred hcCCCHHHHHHHcCcHHHHHHHHHcCC-CCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHH
Q psy12891 316 LRKQTPLHLAAEAGQLQVCKLLLDLGA-SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAM 394 (567)
Q Consensus 316 ~~~~t~L~~a~~~~~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~ 394 (567)
..+.|||+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-INLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence 457899999999999999999999876 9999999999999999999999999999999887 67889999999999999
Q ss_pred cCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCccCcCCcHHHHHHHcCc-----HH
Q psy12891 395 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG-ASCTDENKTGFTAVHLAAQNGH-----NQ 468 (567)
Q Consensus 395 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~-----~~ 468 (567)
.++.+++++|++.+.. .....+..|.||||+|+..|+.+++++|+++| ++++.++..|+||||+|+..++ .+
T Consensus 82 ~~~~~~~~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 82 QGRTEILAYMLKHATP--DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp TTCHHHHHHHHHHSCC--CTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred cCCHHHHHHHHhccCc--ccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 9999999999965432 34455568999999999999999999999999 9999999999999999999998 99
Q ss_pred HHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510 (567)
Q Consensus 469 ~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 510 (567)
++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus 160 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999999999999999999999999999999999874
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.4e-34 Score=257.05 Aligned_cols=217 Identities=23% Similarity=0.378 Sum_probs=186.4
Q ss_pred ccCCCCCCHHHHHHHcCCeeeeccccccccccccCCCCCCCCCCCccccchh---hhhhhhhhcCCCHHHHHHHcCcHHH
Q psy12891 257 VFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA---AVIDILTLRKQTPLHLAAEAGQLQV 333 (567)
Q Consensus 257 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~~~~~t~L~~a~~~~~~~~ 333 (567)
..|..|.||||+|+..|+.++++ +++.... .+++..+..|.||||+|+..|+.++
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~----------------------~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 60 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTM----------------------EVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 60 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSS----------------------CCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHH
T ss_pred cCCCCCCchhHHHHHcCChhHHH----------------------HHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHH
Confidence 46788999999999999998887 2322222 2578888999999999999999999
Q ss_pred HHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCC-----CccccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891 334 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS-----LVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408 (567)
Q Consensus 334 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~ 408 (567)
+++|+++|++++..+..|.||||+|+..++.+++++|++.+.. .....+..|.||||+|+..++.+++++|++.+
T Consensus 61 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 140 (236)
T 1ikn_D 61 AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLG 140 (236)
T ss_dssp HHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999998753 25677889999999999999999999999988
Q ss_pred CCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccc--ccccc
Q psy12891 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV--YSKKL 486 (567)
Q Consensus 409 ~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~--~~~~~ 486 (567)
.+.. ......|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+++. ..+..
T Consensus 141 ~~~~--~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~ 218 (236)
T 1ikn_D 141 ADVN--AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 218 (236)
T ss_dssp CCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCC
T ss_pred CCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccc
Confidence 7633 2222378999999999999999999999999999999999999999999999999999999999776 77788
Q ss_pred CCcHHHHHHHc
Q psy12891 487 GVTALHVAAYF 497 (567)
Q Consensus 487 g~t~l~~A~~~ 497 (567)
|.|+++.+...
T Consensus 219 ~~~~~~~~~~~ 229 (236)
T 1ikn_D 219 DEESYDTESEF 229 (236)
T ss_dssp TTTCCCCC---
T ss_pred hHHHHhhhccc
Confidence 88887766544
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2e-34 Score=262.00 Aligned_cols=222 Identities=19% Similarity=0.201 Sum_probs=153.7
Q ss_pred hhhhhcCCCHHHHHHHcCcHHHHHHHHH----cCCCCC----CcCcCCCCHHHHHHHc---CCHHHHHHHHHhCCCCccc
Q psy12891 312 DILTLRKQTPLHLAAEAGQLQVCKLLLD----LGASID----ATDDQGQKPIHVAAQN---NFPEVAQIFLRAHPSLVTA 380 (567)
Q Consensus 312 ~~~~~~~~t~L~~a~~~~~~~~v~~Ll~----~g~~~~----~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~ 380 (567)
+..+..|.|||+.|+..|+.++|+.|++ .+++++ ..+..|.||||+|+.. ++.+++++|++.++...
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~-- 84 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD-- 84 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT--
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc--
Confidence 3445555556666666555555555444 344443 2344555555555544 55555555555433210
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccC--------
Q psy12891 381 TTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENK-------- 452 (567)
Q Consensus 381 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------- 452 (567)
.++.++.. .....+..|.||||+|+..|+.+++++|+++|++++..+.
T Consensus 85 -------------------~~~~~i~~-----~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~ 140 (273)
T 2pnn_A 85 -------------------SLKQFVNA-----SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTK 140 (273)
T ss_dssp -------------------CHHHHHTC-----CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCS
T ss_pred -------------------chhHHhhc-----ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccc
Confidence 01111211 1122345789999999999999999999999999999887
Q ss_pred ------cCCcHHHHHHHcCcHHHHHHHHh---cccccccccccCCcHHHHHHHcCC---------HHHHHHHHhcCCCCC
Q psy12891 453 ------TGFTAVHLAAQNGHNQVLEEMRS---SKALNVYSKKLGVTALHVAAYFGQ---------ADTVRELLSHVPGTV 514 (567)
Q Consensus 453 ------~g~t~l~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~ 514 (567)
.|.||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++ .+++++|++++++..
T Consensus 141 ~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH 220 (273)
T ss_dssp SSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence 79999999999999999999999 999999999999999999999998 899999999876542
Q ss_pred CCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCC-cccccccc
Q psy12891 515 KSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV-QVDAQTQE 566 (567)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~-~~~~~~~~ 566 (567)
... ...+++|..|.||||+|++.|+.++|++|+++ |+ ||.....+
T Consensus 221 ~~~------~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~dp~~~~~~ 266 (273)
T 2pnn_A 221 PTL------KLEEITNRKGLTPLALAASSGKIGVLAYILQR-EIHEPECRHAA 266 (273)
T ss_dssp TTC------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTC--------
T ss_pred ccc------ccccccCCCCCCHHHHHHHhChHHHHHHHHHC-CCCCchhhhhh
Confidence 110 01135789999999999999999999999997 77 88876554
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.4e-33 Score=230.86 Aligned_cols=158 Identities=33% Similarity=0.415 Sum_probs=135.1
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCc
Q psy12891 387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH 466 (567)
Q Consensus 387 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 466 (567)
++|+.|+..|+.++|++|++.+.+. +..+..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv---n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence 3678888888888888888877663 3445578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCH
Q psy12891 467 NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546 (567)
Q Consensus 467 ~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~ 546 (567)
.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++. +.+|..|.|||++|+++|+.
T Consensus 83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-------------~~~d~~G~TpL~~A~~~g~~ 149 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-------------NTSDSDGRTPLDLAREHGNE 149 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------cccCCCCCCHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999987764 56788899999999999999
Q ss_pred HHHHHHHhccCCccc
Q psy12891 547 NVVRLLLNSAGVQVD 561 (567)
Q Consensus 547 ~~v~~Ll~~~g~~~~ 561 (567)
++|++|+++ |++++
T Consensus 150 ~iv~~Ll~~-GA~ie 163 (169)
T 4gpm_A 150 EVVKLLEKQ-GGWLE 163 (169)
T ss_dssp HHHHHHHTC------
T ss_pred HHHHHHHHC-CCCcC
Confidence 999999986 99876
No 48
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.7e-32 Score=236.04 Aligned_cols=191 Identities=18% Similarity=0.222 Sum_probs=177.2
Q ss_pred cCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHH
Q psy12891 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLA 428 (567)
Q Consensus 349 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A 428 (567)
..+.|||+.|+..++.+.++.|+..++..++..+..|.||||+|+..++.+++++|++.+.+.. ..+..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~~g~t~l~~A 79 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN---LQNSISDSPYLYA 79 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---CCCTTSCCHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHH
Confidence 4678999999999999999999999886788999999999999999999999999999877643 3455789999999
Q ss_pred HHcCcHHHHHHHH-HcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcc-cccccccccCCcHHHHHHHcCC-----HH
Q psy12891 429 AEGGHANVVRVLV-KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK-ALNVYSKKLGVTALHVAAYFGQ-----AD 501 (567)
Q Consensus 429 ~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~l~~A~~~~~-----~~ 501 (567)
+..|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..++ .+
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 9999999999999 677899999999999999999999999999999999 8999999999999999999998 99
Q ss_pred HHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 555 (567)
Q Consensus 502 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 555 (567)
++++|++++.+. +.+|..|.|||++|++.|+.+++++|+++
T Consensus 160 ~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 160 IVKLLMENGADQ-------------SIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHHHCCCCC-------------CccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 999999998765 56789999999999999999999999985
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.7e-33 Score=252.08 Aligned_cols=197 Identities=19% Similarity=0.160 Sum_probs=174.9
Q ss_pred cCCCHHHHHHHcCcHH----HHHHHHHcCCCCCC----cCcCCCCHHHHHHHc---CCHHHHHHHHHhCCCCcc------
Q psy12891 317 RKQTPLHLAAEAGQLQ----VCKLLLDLGASIDA----TDDQGQKPIHVAAQN---NFPEVAQIFLRAHPSLVT------ 379 (567)
Q Consensus 317 ~~~t~L~~a~~~~~~~----~v~~Ll~~g~~~~~----~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~------ 379 (567)
.|+||||.|+..|+.+ ++++|++.|++++. .+..|.||||+|+.. ++.+++++|++.++....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3679999999999997 67888889999998 899999999999999 999999999998765321
Q ss_pred ----ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCC----------CCCCCCHHHHHHHcCcHHHHHHHHH---
Q psy12891 380 ----ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARN----------RVTEATPLQLAAEGGHANVVRVLVK--- 442 (567)
Q Consensus 380 ----~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~----------~~~~~t~L~~A~~~~~~~~v~~Ll~--- 442 (567)
..+..|.||||+|+..|+.+++++|++.+.+....... +..|.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 23467999999999999999999999998764433221 1239999999999999999999999
Q ss_pred cCCCCCCccCcCCcHHHHHHH--cCcHH-------HHHHHHhccccc-------ccccccCCcHHHHHHHcCCHHHHHHH
Q psy12891 443 AGASCTDENKTGFTAVHLAAQ--NGHNQ-------VLEEMRSSKALN-------VYSKKLGVTALHVAAYFGQADTVREL 506 (567)
Q Consensus 443 ~g~~~~~~~~~g~t~l~~A~~--~~~~~-------~v~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L 506 (567)
+|++++.+|..|+||||+|+. .++.+ ++++|+++|+++ +.+|..|+||||+|+..|+.+++++|
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999 88888 999999999999 89999999999999999999999999
Q ss_pred HhcCCCC
Q psy12891 507 LSHVPGT 513 (567)
Q Consensus 507 l~~~~~~ 513 (567)
+++++..
T Consensus 241 l~~g~~~ 247 (256)
T 2etb_A 241 LQREFSG 247 (256)
T ss_dssp HHHHHHH
T ss_pred HhCCCCC
Confidence 9986543
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.4e-33 Score=252.43 Aligned_cols=206 Identities=22% Similarity=0.252 Sum_probs=177.1
Q ss_pred CCCCHHHHHHHcCCHH----HHHHHHHhCCCCccc----cCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCccccc---
Q psy12891 350 QGQKPIHVAAQNNFPE----VAQIFLRAHPSLVTA----TTKDGNTCAHIAAMQ---GSVGVIEELMKFDRSGVISA--- 415 (567)
Q Consensus 350 ~g~t~L~~A~~~~~~~----~~~~Ll~~~~~~~~~----~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~--- 415 (567)
.|+||||.|+..|+.+ ++++|++.+.+ ++. .+..|.||||+|+.. |+.+++++|++.+.+.....
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 3789999999999997 66777778776 455 799999999999999 99999999999876543211
Q ss_pred -----CCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCc-------------CCcHHHHHHHcCcHHHHHHHHh--
Q psy12891 416 -----RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKT-------------GFTAVHLAAQNGHNQVLEEMRS-- 475 (567)
Q Consensus 416 -----~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-------------g~t~l~~A~~~~~~~~v~~Ll~-- 475 (567)
..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|++
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 23357999999999999999999999999999998886 9999999999999999999999
Q ss_pred -cccccccccccCCcHHHHHHH--cCCHH-------HHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891 476 -SKALNVYSKKLGVTALHVAAY--FGQAD-------TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 545 (567)
Q Consensus 476 -~~~~~~~~~~~g~t~l~~A~~--~~~~~-------~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~ 545 (567)
.|++++.+|..|+||||+|+. .++.+ ++++|++++++..... .+.+.+|..|.||||+|++.|+
T Consensus 160 ~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~------~~~~~~d~~g~tpL~~A~~~g~ 233 (256)
T 2etb_A 160 HQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV------QLEEISNHQGLTPLKLAAKEGK 233 (256)
T ss_dssp SCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC------CGGGCCCTTSCCHHHHHHHTTC
T ss_pred ccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc------ccccccCCCCCCHHHHHHHhCC
Confidence 999999999999999999999 88888 9999999876542111 1125678999999999999999
Q ss_pred HHHHHHHHhccCCccccc
Q psy12891 546 ENVVRLLLNSAGVQVDAQ 563 (567)
Q Consensus 546 ~~~v~~Ll~~~g~~~~~~ 563 (567)
.++|++|+++ |.++...
T Consensus 234 ~~~v~~Ll~~-g~~~~~~ 250 (256)
T 2etb_A 234 IEIFRHILQR-EFSGAAA 250 (256)
T ss_dssp HHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhC-CCCCCCc
Confidence 9999999997 7776543
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.1e-32 Score=225.08 Aligned_cols=157 Identities=34% Similarity=0.456 Sum_probs=104.6
Q ss_pred CHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHH
Q psy12891 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVG 399 (567)
Q Consensus 320 t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 399 (567)
++|+.|++.|+.++|++|+++|+|+|.+|..|.|||++|+..++.+++++|++.+.+ ++..+..|+||
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad-~~~~d~~g~Tp----------- 73 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTP----------- 73 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH-----------
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc-hhhhccCCCCH-----------
Confidence 368999999999999999999999999999999999999999999999999988766 44555555554
Q ss_pred HHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccc
Q psy12891 400 VIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479 (567)
Q Consensus 400 ~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 479 (567)
||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 74 -------------------------Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad 128 (169)
T 4gpm_A 74 -------------------------LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128 (169)
T ss_dssp -------------------------HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -------------------------HHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 5555555555555555555555555555555555555555555555555555555
Q ss_pred cccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891 480 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 513 (567)
Q Consensus 480 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~ 513 (567)
++.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus 129 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 129 VNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 5555555555555555555555555555555443
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.98 E-value=3.7e-32 Score=247.08 Aligned_cols=177 Identities=21% Similarity=0.220 Sum_probs=139.4
Q ss_pred hhhcCCCHHHHHHHc---CcHHHHHHHHHcCCCCCC-----------cCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCcc
Q psy12891 314 LTLRKQTPLHLAAEA---GQLQVCKLLLDLGASIDA-----------TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379 (567)
Q Consensus 314 ~~~~~~t~L~~a~~~---~~~~~v~~Ll~~g~~~~~-----------~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~ 379 (567)
.+..|.||||+|+.. |+.+++++|+++|++++. .+..|.||||+|+..++.+++++|++.+++ ++
T Consensus 50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~ 128 (273)
T 2pnn_A 50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQ 128 (273)
T ss_dssp CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TT
T ss_pred cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cC
Confidence 477899999999987 999999999999876432 344566666666666666666666666554 23
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHH---cCCCCCCccCcCCc
Q psy12891 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK---AGASCTDENKTGFT 456 (567)
Q Consensus 380 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t 456 (567)
..+..+. .. .......+..|.||||+|+..|+.+++++|++ +|++++.+|..|+|
T Consensus 129 ~~~~~~~------------------~~----~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~t 186 (273)
T 2pnn_A 129 AAANGDF------------------FK----KTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186 (273)
T ss_dssp CCBCSGG------------------GS----SCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCC
T ss_pred ccccccc------------------cc----cccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCc
Confidence 3332210 00 00112223468899999999999999999999 99999999999999
Q ss_pred HHHHHHHcCc---------HHHHHHHHhcccccc-------cccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891 457 AVHLAAQNGH---------NQVLEEMRSSKALNV-------YSKKLGVTALHVAAYFGQADTVRELLSHVPGT 513 (567)
Q Consensus 457 ~l~~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~ 513 (567)
|||+|+..|+ .+++++|+++|++++ .+|..|+||||+|+..|+.+++++|+++++..
T Consensus 187 pLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~d 259 (273)
T 2pnn_A 187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHE 259 (273)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCC
Confidence 9999999888 799999999999886 48999999999999999999999999998843
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=1.6e-32 Score=247.81 Aligned_cols=215 Identities=18% Similarity=0.188 Sum_probs=169.6
Q ss_pred hhcCCCHHHHHHHcCcHHH----HHHHHHcCCCCCCcC----cCCCCHHHHHH---HcCCHHHHHHHHHhCCCCccccCC
Q psy12891 315 TLRKQTPLHLAAEAGQLQV----CKLLLDLGASIDATD----DQGQKPIHVAA---QNNFPEVAQIFLRAHPSLVTATTK 383 (567)
Q Consensus 315 ~~~~~t~L~~a~~~~~~~~----v~~Ll~~g~~~~~~~----~~g~t~L~~A~---~~~~~~~~~~Ll~~~~~~~~~~~~ 383 (567)
+..++++|+.|++.|+.+. +++|++.|++++..+ ..|.||||+|+ ..++.+++++|++.+.....
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~---- 77 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN---- 77 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTC----
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccc----
Confidence 3457788888888888884 455555888888665 56888888888 56888888888876543110
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc------------
Q psy12891 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN------------ 451 (567)
Q Consensus 384 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~------------ 451 (567)
+..++. ......+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 78 -----------------~~~~~~-----~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~ 135 (260)
T 3jxi_A 78 -----------------MREFIN-----SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGG 135 (260)
T ss_dssp -----------------HHHHHT-----CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCC
T ss_pred -----------------hHhhhc-----ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccc
Confidence 011111 1122333478899999999999999999999999999988
Q ss_pred --CcCCcHHHHHHHcCcHHHHHHHHh---cccccccccccCCcHHHHHHHcCC---------HHHHHHHHhcCCCCCCCC
Q psy12891 452 --KTGFTAVHLAAQNGHNQVLEEMRS---SKALNVYSKKLGVTALHVAAYFGQ---------ADTVRELLSHVPGTVKSD 517 (567)
Q Consensus 452 --~~g~t~l~~A~~~~~~~~v~~Ll~---~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~~~~~~ 517 (567)
..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++ .+++++|++++++.....
T Consensus 136 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~ 215 (260)
T 3jxi_A 136 YFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215 (260)
T ss_dssp SCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc
Confidence 589999999999999999999999 999999999999999999998888 799999999876542111
Q ss_pred CCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcccc
Q psy12891 518 PPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562 (567)
Q Consensus 518 ~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~ 562 (567)
...+..|..|.||||+|++.|+.++|++||++ |.++..
T Consensus 216 ------~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g~~~~~ 253 (260)
T 3jxi_A 216 ------NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADAA 253 (260)
T ss_dssp ------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HHHHHC
T ss_pred ------chhhcccCCCCCHHHHHHHcCCHHHHHHHHHh-CCCccc
Confidence 11256789999999999999999999999998 766554
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=3.1e-32 Score=245.88 Aligned_cols=186 Identities=17% Similarity=0.176 Sum_probs=142.3
Q ss_pred chhhhhhhhh----hcCCCHHHHHH---HcCcHHHHHHHHHcCCCC-----------CCcCcCCCCHHHHHHHcCCHHHH
Q psy12891 306 DHAAVIDILT----LRKQTPLHLAA---EAGQLQVCKLLLDLGASI-----------DATDDQGQKPIHVAAQNNFPEVA 367 (567)
Q Consensus 306 ~~~~~~~~~~----~~~~t~L~~a~---~~~~~~~v~~Ll~~g~~~-----------~~~~~~g~t~L~~A~~~~~~~~~ 367 (567)
..+..++..+ ..|.||||+|+ ..|+.+++++|++.|+++ +..+..|.||||+|+..|+.+++
T Consensus 30 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v 109 (260)
T 3jxi_A 30 THKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYV 109 (260)
T ss_dssp HHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHH
T ss_pred hcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHH
Confidence 3566666555 56999999999 779999999999998653 33333556666666666666666
Q ss_pred HHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHH---cC
Q psy12891 368 QIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK---AG 444 (567)
Q Consensus 368 ~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~---~g 444 (567)
++|++.+++ ++..+..+. .........+..|.||||+|+..|+.+++++|++ +|
T Consensus 110 ~~Ll~~ga~-~~~~~~~~~----------------------~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g 166 (260)
T 3jxi_A 110 ELLVEKGAD-VHAQARGRF----------------------FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ 166 (260)
T ss_dssp HHHHHTTCC-TTCCCEECC----------------------CSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred HHHHhCCCC-cCccccccc----------------------cCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence 666665544 222222100 0000111122478899999999999999999999 99
Q ss_pred CCCCCccCcCCcHHHHHHHcCc---------HHHHHHHHhccccc-------ccccccCCcHHHHHHHcCCHHHHHHHHh
Q psy12891 445 ASCTDENKTGFTAVHLAAQNGH---------NQVLEEMRSSKALN-------VYSKKLGVTALHVAAYFGQADTVRELLS 508 (567)
Q Consensus 445 ~~~~~~~~~g~t~l~~A~~~~~---------~~~v~~Ll~~~~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 508 (567)
++++.+|..|+||||+|+..++ .+++++|+++|+++ +.+|..|+||||+|+..|+.+++++|++
T Consensus 167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~ 246 (260)
T 3jxi_A 167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246 (260)
T ss_dssp CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999998887 79999999999988 6799999999999999999999999999
Q ss_pred cCCCCC
Q psy12891 509 HVPGTV 514 (567)
Q Consensus 509 ~~~~~~ 514 (567)
+++...
T Consensus 247 ~g~~~~ 252 (260)
T 3jxi_A 247 REIADA 252 (260)
T ss_dssp HHHHHH
T ss_pred hCCCcc
Confidence 977554
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=3.1e-31 Score=240.13 Aligned_cols=192 Identities=21% Similarity=0.266 Sum_probs=178.4
Q ss_pred hcCCCHHHHHHHcCcHHHHHHHHHcCCC--CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q psy12891 316 LRKQTPLHLAAEAGQLQVCKLLLDLGAS--IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 393 (567)
Q Consensus 316 ~~~~t~L~~a~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~ 393 (567)
....++++.|+..++.+.++.+++.+.+ +|..|..|.||||+|+..|+.+++++|++.++..++..+..|.|||++|+
T Consensus 74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence 3456889999999999999999988777 88999999999999999999999999999998668999999999999999
Q ss_pred -----HcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHH
Q psy12891 394 -----MQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468 (567)
Q Consensus 394 -----~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 468 (567)
..++.+++++|++.+.. ....+..|.||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~ 230 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNI---NAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE 230 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCT---TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HHHhhhhhhHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 67899999999998754 3445557999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cccccccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891 469 VLEEMRS-SKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510 (567)
Q Consensus 469 ~v~~Ll~-~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 510 (567)
++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus 231 iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 231 IAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999 89999999999999999999999999999999984
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=236.06 Aligned_cols=193 Identities=19% Similarity=0.244 Sum_probs=171.9
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhCCC-CccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHH-
Q psy12891 352 QKPIHVAAQNNFPEVAQIFLRAHPS-LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA- 429 (567)
Q Consensus 352 ~t~L~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~- 429 (567)
.+++|.|+..++.+.++.+++.... .++..+..|.||||+|+..|+.+++++|++.+.. .....+..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~tpL~~a~~ 154 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVC--KVDKQNRAGYSPIMLTAL 154 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCC--CTTCCCTTSCCHHHHGGG
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC--cCCCCCCCCCCHHHHHHH
Confidence 4677888988999998888765332 2567889999999999999999999999998763 34455668999999999
Q ss_pred ----HcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHH
Q psy12891 430 ----EGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRE 505 (567)
Q Consensus 430 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 505 (567)
..++.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 155 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~ 234 (276)
T 4hbd_A 155 ATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGL 234 (276)
T ss_dssp CCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-cCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCc
Q psy12891 506 LLS-HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 559 (567)
Q Consensus 506 Ll~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~ 559 (567)
|++ .+.+. +.+|..|.|||++|++.|+.+++++|+++.|++
T Consensus 235 Ll~~~gad~-------------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~ik 276 (276)
T 4hbd_A 235 LLAVPSCDI-------------SLTDRDGSTALMVALDAGQSEIASMLYSRMNIK 276 (276)
T ss_dssp HHTSTTCCT-------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHCCCC
T ss_pred HHhcCCCCC-------------cCcCCCCCCHHHHHHHcCCHHHHHHHHhccCCC
Confidence 999 55543 667899999999999999999999999987763
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=6.1e-30 Score=214.83 Aligned_cols=166 Identities=22% Similarity=0.198 Sum_probs=135.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHc
Q psy12891 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 464 (567)
Q Consensus 385 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 464 (567)
+.+|||.|+..|+.+++++|++.+.. .....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDN--LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSG--GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcc--cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC
Confidence 34678888888888888888876543 3444556788899999999999999999999999988888899999999999
Q ss_pred CcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcC
Q psy12891 465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544 (567)
Q Consensus 465 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~ 544 (567)
|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+. +.+|..|.|||++|++.|
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~ 146 (172)
T 3v30_A 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-------------TTEADSGYTPMDLAVALG 146 (172)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------cccCCCCCCHHHHHHHhC
Confidence 9999999999999888888888999999999999999999999887654 556788889999999999
Q ss_pred CHHHHHHHHhccCCcccccccc
Q psy12891 545 NENVVRLLLNSAGVQVDAQTQE 566 (567)
Q Consensus 545 ~~~~v~~Ll~~~g~~~~~~~~~ 566 (567)
+.+++++|+++ |+++..++..
T Consensus 147 ~~~~~~~L~~~-~~~~~~~~~~ 167 (172)
T 3v30_A 147 YRKVQQVIENH-ILKLFQSNLV 167 (172)
T ss_dssp CHHHHHHHHHH-HHHHSCC---
T ss_pred cHHHHHHHHHH-HHHHhcccCC
Confidence 99999999986 8887776643
No 58
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=8.6e-30 Score=211.78 Aligned_cols=159 Identities=25% Similarity=0.284 Sum_probs=142.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHH
Q psy12891 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 463 (567)
Q Consensus 384 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 463 (567)
...+||+.|+..|+.+++++|++.+.+. ...+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 79 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAAR 79 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc---cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 4558899999999999999999876553 3445578999999999 99999999999999999999999999999999
Q ss_pred cCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHc
Q psy12891 464 NGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS 543 (567)
Q Consensus 464 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~ 543 (567)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.. +..+..|.|||++|++.
T Consensus 80 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------~~~~~~g~t~l~~A~~~ 147 (162)
T 1ihb_A 80 AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV------------GHRNHKGDTACDLARLY 147 (162)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT------------TCCCTTSCCHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC------------CCcCCCCCcHHHHHHHc
Confidence 999999999999999999999999999999999999999999999988654 45688999999999999
Q ss_pred CCHHHHHHHHhccCCc
Q psy12891 544 GNENVVRLLLNSAGVQ 559 (567)
Q Consensus 544 ~~~~~v~~Ll~~~g~~ 559 (567)
|+.+++++|+++ |+|
T Consensus 148 ~~~~~~~~Ll~~-GAd 162 (162)
T 1ihb_A 148 GRNEVVSLMQAN-GAG 162 (162)
T ss_dssp TCHHHHHHHHHT-C--
T ss_pred CCHHHHHHHHHh-CCC
Confidence 999999999996 886
No 59
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=2.1e-29 Score=210.44 Aligned_cols=161 Identities=20% Similarity=0.186 Sum_probs=116.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHH
Q psy12891 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 463 (567)
Q Consensus 384 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 463 (567)
.|.||||.|+..|+.+++++|++.+.. ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC---cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 356677777777777777777766533 33334467777777777777777777777777777777777777877777
Q ss_pred cCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHc
Q psy12891 464 NGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS 543 (567)
Q Consensus 464 ~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~ 543 (567)
.|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+. +.++..|.|||++|+..
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------~~~~~~g~t~l~~A~~~ 145 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-------------TIETDSGYNSMDLAVAL 145 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------CCcCCCCCCHHHHHHHc
Confidence 77777777777777777777777777888777777777887777776543 44567777888888888
Q ss_pred CCHHHHHHHHhccCCccc
Q psy12891 544 GNENVVRLLLNSAGVQVD 561 (567)
Q Consensus 544 ~~~~~v~~Ll~~~g~~~~ 561 (567)
|+.+++++|+++ +++..
T Consensus 146 ~~~~~~~~L~~~-~~~~~ 162 (167)
T 3v31_A 146 GYRSVQQVIESH-LLKLL 162 (167)
T ss_dssp TCHHHHHHHHHH-HHHHC
T ss_pred CcHHHHHHHHHH-HHHHH
Confidence 888888887775 55443
No 60
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.3e-29 Score=214.13 Aligned_cols=169 Identities=19% Similarity=0.226 Sum_probs=146.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHH
Q psy12891 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462 (567)
Q Consensus 383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 462 (567)
.++.++|+.|+..|+.+++++|++.+.. .....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEN--DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 3567888888888888888888886433 33445567889999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH
Q psy12891 463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542 (567)
Q Consensus 463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~ 542 (567)
..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+. +.+|..|.|||++|+.
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~tpl~~A~~ 147 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-------------SICNKYGEMPVDKAKA 147 (179)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-------------SBCCTTSCCGGGGSCH
T ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-------------chhccCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999987764 5678899999999999
Q ss_pred cCCHHHHHHHHhccCCccccccccC
Q psy12891 543 SGNENVVRLLLNSAGVQVDAQTQEN 567 (567)
Q Consensus 543 ~~~~~~v~~Ll~~~g~~~~~~~~~~ 567 (567)
.++.+++++|+++ |++++....++
T Consensus 148 ~~~~~~~~~L~~~-g~~~~~~~~~~ 171 (179)
T 3f6q_A 148 PLRELLRERAEKM-GQNLNRIPYKD 171 (179)
T ss_dssp HHHHHHHHHHHHT-TCCCSCBCCCC
T ss_pred HHHHHHHHHHHHh-hcCcccCCccc
Confidence 9999999999985 99999877653
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2.3e-29 Score=215.48 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=99.7
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHH
Q psy12891 381 TTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 460 (567)
Q Consensus 381 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 460 (567)
++..|.||||+|+..|+.+++++|++.+.+ ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFDK---LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhccc---cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 344455555555555555555555544332 12223356666666666666667777776677766666667777777
Q ss_pred HHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHH
Q psy12891 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 540 (567)
Q Consensus 461 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A 540 (567)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++.+. +.+|..|.|||++|
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A 174 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-------------SARDLTGLTAEASA 174 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-------------TCBCTTSCBHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------------CCcCCCCCCHHHHH
Confidence 77777777777777777666666666777777777777777777777665543 44556667777777
Q ss_pred HHcCCHHHHHHHHhc
Q psy12891 541 AYSGNENVVRLLLNS 555 (567)
Q Consensus 541 ~~~~~~~~v~~Ll~~ 555 (567)
+..|+.+++++|+++
T Consensus 175 ~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 175 RIFGRQEVIKIFTEV 189 (192)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHhc
Confidence 777777777777664
No 62
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=8.1e-29 Score=206.97 Aligned_cols=158 Identities=29% Similarity=0.344 Sum_probs=134.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461 (567)
Q Consensus 382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 461 (567)
...+.++++.|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence 345567888888888888888888876553 33445788999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q psy12891 462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541 (567)
Q Consensus 462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~ 541 (567)
+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+. +.+|..|.|||++|+
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------~~~~~~g~t~l~~A~ 154 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-------------NAQDKFGKTAFDISI 154 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------CCcCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999987654 556788999999999
Q ss_pred HcCCHHHHHHHHhc
Q psy12891 542 YSGNENVVRLLLNS 555 (567)
Q Consensus 542 ~~~~~~~v~~Ll~~ 555 (567)
++|+.+++++|++.
T Consensus 155 ~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 155 DNGNEDLAEILQKL 168 (169)
T ss_dssp HTTCHHHHHHHHTC
T ss_pred HhCCHHHHHHHHHc
Confidence 99999999999874
No 63
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=8.3e-29 Score=211.95 Aligned_cols=163 Identities=21% Similarity=0.247 Sum_probs=116.6
Q ss_pred hhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHH
Q psy12891 311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAH 390 (567)
Q Consensus 311 ~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~ 390 (567)
++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+++ ++.
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~---------- 96 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNT---------- 96 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTC----------
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCC----------
Confidence 444555666666666666666666666666666666666666666666666666666666655443 222
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHH
Q psy12891 391 IAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 470 (567)
Q Consensus 391 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v 470 (567)
.+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus 97 --------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 150 (192)
T 2rfm_A 97 --------------------------KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIV 150 (192)
T ss_dssp --------------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHH
T ss_pred --------------------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 233566777777777888888888888888888888888888888888888888
Q ss_pred HHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891 471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510 (567)
Q Consensus 471 ~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 510 (567)
++|+++|++++.+|..|+|||++|+..|+.+++++|++++
T Consensus 151 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 151 KKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 8888888888888888888888888888888888887753
No 64
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=1.1e-28 Score=206.11 Aligned_cols=158 Identities=26% Similarity=0.348 Sum_probs=141.4
Q ss_pred CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q psy12891 9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQL 88 (567)
Q Consensus 9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 88 (567)
.|.||||.||..|+.+.+. .|++.|++++.++..|+||||+|+..|+.+++++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~---------------------------~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 54 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLA---------------------------TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF 54 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHH---------------------------HHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHH---------------------------HHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence 4789999999999988444 4778888999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccccccc
Q psy12891 89 LLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKED 168 (567)
Q Consensus 89 Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~ 168 (567)
|+++|++++..+..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+. .++
T Consensus 55 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~t~L~~A~~-----------~~~ 114 (167)
T 3v31_A 55 LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD---------VNEYDWNGGTPLLYAVH-----------GNH 114 (167)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTSCCHHHHHHH-----------TTC
T ss_pred HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---------CCcCCCCCCCHHHHHHH-----------cCC
Confidence 9999999999999999999999999999999999999887 67889999999999998 456
Q ss_pred HHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhcc
Q psy12891 169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMS 214 (567)
Q Consensus 169 ~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 214 (567)
.+++++|+++|++++..+.. |.||+++|+..|+.+++++|++++.
T Consensus 115 ~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 115 VKCVKMLLESGADPTIETDS-GYNSMDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp HHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHHHHH
Confidence 67799999999999876554 5899999999999999999998754
No 65
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=5.7e-32 Score=252.60 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=151.7
Q ss_pred cCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCC---CCCCCCCCChhHHHHhcCchhHHHHHH
Q psy12891 47 KDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDP---MYKNKIGETPLHLASRNCKAEVVDLLI 123 (567)
Q Consensus 47 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~t~L~~A~~~~~~~iv~~Ll 123 (567)
.+..+++++++++|++. .||||+|+..|+.++|++|+++|+.. +..+..|.||||+|+..|+.++|++|+
T Consensus 76 ~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll 148 (376)
T 2aja_A 76 RNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC 148 (376)
T ss_dssp TTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHH
Confidence 46778899999998764 59999999999999999999999832 234456778999999999999999999
Q ss_pred HhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccc--cccCCCccHHHHHH-hc
Q psy12891 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL--QTKQNHETAFHYCA-VA 200 (567)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~--~~~~~~~~~l~~a~-~~ 200 (567)
++|++.... .++. .+ .||||+|+. .++.++|++|+++|++++. .+. .|.||||+|+ .+
T Consensus 149 ~~gad~~~~----~i~~--~~-~TpLh~Aa~-----------~G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa~~~ 209 (376)
T 2aja_A 149 ELAPTEIMA----MIQA--EN-YHAFRLAAE-----------NGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAAVGR 209 (376)
T ss_dssp HSCTTTHHH----HHSH--HH-HHHHHHHHH-----------TTCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHHSTT
T ss_pred hCCCCcccc----ccCC--CC-CCHHHHHHH-----------CCCHHHHHHHHHcCCccchhccCC-CCCCHHHHHHHHC
Confidence 999642110 0222 22 899999999 5567779999999999775 333 4589999999 99
Q ss_pred CCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeeec
Q psy12891 201 GNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279 (567)
Q Consensus 201 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~~ 279 (567)
|+.+++++|++.+. .+.|||++|+..|+.+++++|+++|++++..+ +++++|+..|+.+++.
T Consensus 210 G~~eiv~~Ll~~ga-------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~ 271 (376)
T 2aja_A 210 GHHNVINFLLDCPV-------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVT 271 (376)
T ss_dssp CCHHHHHHHTTSHH-------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSS
T ss_pred CCHHHHHHHHhCCC-------------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhc
Confidence 99999999998642 16799999999999999999999998876654 3677788888877654
No 66
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=9e-29 Score=203.02 Aligned_cols=150 Identities=27% Similarity=0.285 Sum_probs=120.2
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcC
Q psy12891 386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNG 465 (567)
Q Consensus 386 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 465 (567)
.++|+.|+..|+.+++++|++.+.+.. .+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 467777777777777777777765422 3446778888888888888888888888888888888888888888888
Q ss_pred cHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCC
Q psy12891 466 HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 545 (567)
Q Consensus 466 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~ 545 (567)
+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++++. +.+|..|.|||++|+++|+
T Consensus 79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-------------HTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTC
T ss_pred hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------cccCCCCCCHHHHHHHcCC
Confidence 888888888888888888888888888888888888888888886654 4567788888888888888
Q ss_pred HHHHHHH
Q psy12891 546 ENVVRLL 552 (567)
Q Consensus 546 ~~~v~~L 552 (567)
.+++++|
T Consensus 146 ~~i~~~L 152 (153)
T 1awc_B 146 EDLAEIL 152 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888876
No 67
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.4e-32 Score=235.54 Aligned_cols=199 Identities=24% Similarity=0.185 Sum_probs=167.0
Q ss_pred HHHHHhcCCCCCCCC---CCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhh
Q psy12891 53 ALMLLKSGAGPNLTT---DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI 129 (567)
Q Consensus 53 ~~~Ll~~g~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~ 129 (567)
++.|+++|++++..+ .++.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~- 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN- 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence 356788888887554 4677889999999999999999999999999999999999999999999999999999988
Q ss_pred hhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHH--HhcCCHHHHH
Q psy12891 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC--AVAGNNDVLT 207 (567)
Q Consensus 130 ~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a--~~~~~~~~~~ 207 (567)
++.++..|.||||+|+.. ++.+++++|+++|++++..+...|.|||++| +..|+.++++
T Consensus 80 --------~n~~d~~g~tpLh~A~~~-----------g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~ 140 (229)
T 2vge_A 80 --------VNSPDSHGWTPLHCAASC-----------NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140 (229)
T ss_dssp --------TTCCCTTCCCHHHHHHHT-----------TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHH
T ss_pred --------CCCCCCCCCCHHHHHHHc-----------CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHH
Confidence 788899999999999984 5677799999999999988777789999999 9999999999
Q ss_pred HHHHhccCcchhhhhhcCCCCCChHHHHHHhcCcHHHHHHHHhCCCC--CCccCCCCCCHHHHHHHcCCeeeecc
Q psy12891 208 GMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHAR--VDVFDQEGRSALHLAAEHGYLKVSSG 280 (567)
Q Consensus 208 ~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~~~t~l~~a~~~~~~~~~~~ 280 (567)
+|++.+++. +..+..+.++++.++... ..++|++.|++ ++.+|..|+|||++|+..|+.++++.
T Consensus 141 ~Ll~~ga~~------~~~~~~~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 141 YLADVEQSM------GLMNSGAVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp HHHHHHHHT------TTSGGGEEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred HHHHcCCCc------ccccCCchHHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 999987654 456667788888655443 33678889988 67789999999999999999999985
No 68
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.3e-28 Score=206.65 Aligned_cols=168 Identities=22% Similarity=0.278 Sum_probs=116.0
Q ss_pred CCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC
Q psy12891 319 QTPLHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS 397 (567)
Q Consensus 319 ~t~L~~a~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~ 397 (567)
.+||+.|+..|+.+++++|++.|.+ ++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..++
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGY 81 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCCC
Confidence 4778888888888888888887776 677777788888888888888888888877765 56666677777777777777
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcc
Q psy12891 398 VGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK 477 (567)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 477 (567)
.+++++|++.+.+. ...+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|++++
T Consensus 82 ~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 82 TDIVGLLLERDVDI---NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp HHHHHHHHTTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 77777777665442 233345667777777777777777777777777777777777777777777777777777777
Q ss_pred cccccccccCCcH
Q psy12891 478 ALNVYSKKLGVTA 490 (567)
Q Consensus 478 ~~~~~~~~~g~t~ 490 (567)
++...++..|.||
T Consensus 159 ~~~~~~~~~~~~p 171 (172)
T 3v30_A 159 LKLFQSNLVPADP 171 (172)
T ss_dssp HHHSCC-------
T ss_pred HHHhcccCCCCCC
Confidence 6666666555554
No 69
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=1.3e-28 Score=203.16 Aligned_cols=154 Identities=25% Similarity=0.258 Sum_probs=132.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHc
Q psy12891 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 464 (567)
Q Consensus 385 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 464 (567)
+.++|+.|+..|+.+++++|++. . .......+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-E-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-T-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-h-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence 34788888888888888888876 2 12334445578899999 889999999999999999999999999999999999
Q ss_pred CcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcC
Q psy12891 465 GHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544 (567)
Q Consensus 465 ~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~ 544 (567)
|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ .+. +.+|..|.|||++|++.|
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-------------~~~~~~g~t~l~~A~~~~ 144 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-------------HRRDARGLTPLELALQRG 144 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-------------TCCCTTSCCHHHHHHHSC
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-------------CCcCCCCCCHHHHHHHcC
Confidence 999999999999999999999999999999999999999999987 432 556888999999999999
Q ss_pred CHHHHHHHHhc
Q psy12891 545 NENVVRLLLNS 555 (567)
Q Consensus 545 ~~~~v~~Ll~~ 555 (567)
+.+++++|+++
T Consensus 145 ~~~~v~~Ll~~ 155 (156)
T 1bd8_A 145 AQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHTT
T ss_pred cHHHHHHHHhh
Confidence 99999999975
No 70
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=1.9e-32 Score=255.79 Aligned_cols=316 Identities=13% Similarity=0.067 Sum_probs=187.6
Q ss_pred hhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHH-hCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHH
Q psy12891 44 ARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAK-YGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122 (567)
Q Consensus 44 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~-~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~L 122 (567)
.+.....+.+..++....+++.. .+.+++++|.. .++.+++++|+++|++. .||||+|+..|+.++|++|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~L 111 (376)
T 2aja_A 41 LMTLSYKEAIHIFLPGTKNMEQV--RQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTL 111 (376)
T ss_dssp HHHSCHHHHHHHCCCCSSHHHHH--HHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHH
T ss_pred hhhccHHHHHHHHhcCCCCHHHH--HHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHH
Confidence 33344556666666554443322 24568888876 57899999999988754 4899999999999999999
Q ss_pred HHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCcc---ccccCCCccHHHHHHh
Q psy12891 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS---LQTKQNHETAFHYCAV 199 (567)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~---~~~~~~~~~~l~~a~~ 199 (567)
++.|+... .....+..+.||||+|+. .++.++|++|+++|+++. .... . .||||+|+.
T Consensus 112 l~~ga~~~------~~~~~~~~~~tpL~~Aa~-----------~G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpLh~Aa~ 172 (376)
T 2aja_A 112 CLLLTSDE------IVKVIQAENYQAFRLAAE-----------NGHLHVLNRLCELAPTEIMAMIQAE-N-YHAFRLAAE 172 (376)
T ss_dssp TTC--CCS------SCC--CHHHHHHHHHHHH-----------TTCHHHHHHHHHSCTTTHHHHHSHH-H-HHHHHHHHH
T ss_pred HHcCCcHH------HHHHhccCCCCHHHHHHH-----------cCCHHHHHHHHhCCCCccccccCCC-C-CCHHHHHHH
Confidence 99877310 012335567789999998 456667999999997632 2222 2 788888888
Q ss_pred cCCHHHHHHHHHhccCcchhhhhhcCCCCCChHHHHHH-hcCcHHHHHHHHhCCCCCCccCCCCCCHHHHHHHcCCeeee
Q psy12891 200 AGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC-NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS 278 (567)
Q Consensus 200 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~L~~A~-~~~~~~~v~~Ll~~g~~~~~~~~~~~t~l~~a~~~~~~~~~ 278 (567)
.|+.+++++|++++++... ...+..|.||||+|+ ..|+.+++++|++.|++
T Consensus 173 ~G~~eiv~~Ll~~ga~~~~----~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~------------------------ 224 (376)
T 2aja_A 173 NGHLHVLNRLCELAPTEAT----AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM------------------------ 224 (376)
T ss_dssp TTCHHHHHHHHHSCGGGHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH------------------------
T ss_pred CCCHHHHHHHHHcCCccch----hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc------------------------
Confidence 8888888888887664321 013444678888888 88888888888775421
Q ss_pred ccccccccccccCCCCCCCCCCCccccchhhhhhhhhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHH
Q psy12891 279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358 (567)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 358 (567)
+.|||+.|+.+|+.+++++|+++|++++..+ ++++.|
T Consensus 225 ---------------------------------------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A 261 (376)
T 2aja_A 225 ---------------------------------------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLS 261 (376)
T ss_dssp ---------------------------------------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTT
T ss_pred ---------------------------------------cchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHH
Confidence 2267777777788888888888887775543 245556
Q ss_pred HHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHH
Q psy12891 359 AQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438 (567)
Q Consensus 359 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~ 438 (567)
+..|+.+++..... .....+++.++..+.. +..+.++
T Consensus 262 ~~~g~~~vv~~~~~----------------------~~~~~~~~~li~~~~~---------------------~~~~~~~ 298 (376)
T 2aja_A 262 NPDGVFDLVTKSEC----------------------LQGFYMLRNLIRRNDE---------------------VLLDDIR 298 (376)
T ss_dssp SSSSCCCCSSHHHH----------------------HHHHHHHHHHHHHCCG---------------------GGHHHHH
T ss_pred HHCCChhhhcHHhh----------------------hhhHHHHHHHHHcchh---------------------hHHHHHH
Confidence 66665543321000 0001123333332110 1133344
Q ss_pred HHH---------HcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHh
Q psy12891 439 VLV---------KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS 508 (567)
Q Consensus 439 ~Ll---------~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 508 (567)
+|+ +.|++++ .+.|||++|+..|+.+++++|++.| ..++..+.|++.+|-..|..++++.-+.
T Consensus 299 ~Ll~~~~vk~l~~~g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (376)
T 2aja_A 299 FLLSIPGIKALAPTATIPG----DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVALE 370 (376)
T ss_dssp HHHTSTTTGGGSSCCSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC---------------------
T ss_pred HHHhChhhhhhhccCCCCC----CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHHH
Confidence 444 3555554 3558899999999999999999876 4455668889999999998888876544
No 71
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=7.8e-32 Score=236.07 Aligned_cols=194 Identities=18% Similarity=0.080 Sum_probs=170.0
Q ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC
Q psy12891 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS 397 (567)
Q Consensus 318 ~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~ 397 (567)
+.|||+.|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+..|.||||+|+..|+
T Consensus 21 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~~g~ 99 (229)
T 2vge_A 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN-VNSPDSHGWTPLHCAASCND 99 (229)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTC
T ss_pred hhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCC
Confidence 44789999999999999999999999999999999999999999999999999999877 78889999999999999999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCCCHHHHH--HHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHh
Q psy12891 398 VGVIEELMKFDRSGVISARNRVTEATPLQLA--AEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475 (567)
Q Consensus 398 ~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A--~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 475 (567)
.+++++|++.+.+.. ...+..|.||||+| +..|+.+++++|+++|++++..+..|.||++.++.... .++|++
T Consensus 100 ~~~v~~Ll~~ga~~~--~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~ll~ 174 (229)
T 2vge_A 100 TVICMALVQHGAAIF--ATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DELSFR 174 (229)
T ss_dssp HHHHHHHHTTTCCTT--CCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBCCBC
T ss_pred HHHHHHHHHcCCCcc--cccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---cccCcc
Confidence 999999999877633 33335899999999 99999999999999999999999999999987655543 367889
Q ss_pred cccc--cccccccCCcHHHHHHHcCCHHHHHH-HHhcCCCCCCCC
Q psy12891 476 SKAL--NVYSKKLGVTALHVAAYFGQADTVRE-LLSHVPGTVKSD 517 (567)
Q Consensus 476 ~~~~--~~~~~~~g~t~l~~A~~~~~~~~~~~-Ll~~~~~~~~~~ 517 (567)
.|++ ++.+|..|+||||+|+..|+.++|+. +++..|+...+.
T Consensus 175 ~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~~~~~~ 219 (229)
T 2vge_A 175 EGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQR 219 (229)
T ss_dssp TTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCCCC---
T ss_pred ccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCCCCCch
Confidence 9987 66789999999999999999999987 667776665443
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=5.8e-29 Score=207.25 Aligned_cols=160 Identities=26% Similarity=0.321 Sum_probs=135.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461 (567)
Q Consensus 382 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 461 (567)
+.++.++|+.|+..|+.+++++|++.... .....+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 45677888888888888888888875432 3344455678999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q psy12891 462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541 (567)
Q Consensus 462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~ 541 (567)
+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++.+. +.+|..|.|||++|+
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~a~ 149 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-------------TKKNRDGNTPLDLVK 149 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCTGGGSC
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------cccCCCCCChhHhHh
Confidence 9999999999999999999999999999999999999999999999987654 567889999999987
Q ss_pred HcCCHHHHHHHHhccCC
Q psy12891 542 YSGNENVVRLLLNSAGV 558 (567)
Q Consensus 542 ~~~~~~~v~~Ll~~~g~ 558 (567)
+ |+.+++++|+++ |+
T Consensus 150 ~-~~~~i~~~L~~~-gA 164 (165)
T 3twr_A 150 D-GDTDIQDLLRGD-AA 164 (165)
T ss_dssp T-TCHHHHHHHHTC---
T ss_pred c-CChHHHHHHhhc-cc
Confidence 7 899999999986 54
No 73
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=6.7e-29 Score=206.39 Aligned_cols=136 Identities=24% Similarity=0.350 Sum_probs=78.9
Q ss_pred HHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHh
Q psy12891 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVL 135 (567)
Q Consensus 56 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~ 135 (567)
|+++|++++.++..|+||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus 24 Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------- 95 (162)
T 1ihb_A 24 LLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD------- 95 (162)
T ss_dssp HTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-------
T ss_pred HHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-------
Confidence 455566666666666666666666 666666666666666666666666666666666666666666666655
Q ss_pred hhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHh
Q psy12891 136 EYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQ 212 (567)
Q Consensus 136 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 212 (567)
++.++..|.||||+|+. .++.+++++|+++|++.....+..|.|||++|+..|+.+++++|+++
T Consensus 96 --~~~~~~~g~t~L~~A~~-----------~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 96 --VNIEDNEGNLPLHLAAK-----------EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp --TTCCCTTSCCHHHHHHH-----------TTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred --CCCcCCCCCCHHHHHHH-----------cCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 45555566666666665 23344466666666553212222234444444444444444444444
No 74
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=3.7e-28 Score=202.98 Aligned_cols=157 Identities=32% Similarity=0.430 Sum_probs=122.2
Q ss_pred cCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC
Q psy12891 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 396 (567)
Q Consensus 317 ~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~ 396 (567)
.+.++|+.|++.|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.+ ++..+.
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~------------- 78 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDH------------- 78 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-------------
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCC-------------
Confidence 445789999999999999999999999988888888888888888888888888887654 233332
Q ss_pred CHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhc
Q psy12891 397 SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS 476 (567)
Q Consensus 397 ~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 476 (567)
.|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++
T Consensus 79 -----------------------~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 135 (169)
T 2y1l_E 79 -----------------------AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135 (169)
T ss_dssp -----------------------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred -----------------------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 456777777777777777777777777777777777777777777777777777777
Q ss_pred ccccccccccCCcHHHHHHHcCCHHHHHHHHhcC
Q psy12891 477 KALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510 (567)
Q Consensus 477 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 510 (567)
|++++.+|..|.|||++|+..++.+++++|++.|
T Consensus 136 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 136 GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 7777777777777777777777777777777653
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=1.7e-27 Score=195.41 Aligned_cols=149 Identities=29% Similarity=0.349 Sum_probs=108.3
Q ss_pred CHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcC
Q psy12891 353 KPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG 432 (567)
Q Consensus 353 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~ 432 (567)
++|+.|+..|+.+++++|++.+... . .+..|.||||+|+..++.+++++|++.+.+. ...+..|.||||+|+..|
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcC
Confidence 4455555555555555555544432 1 3444555555555555555555555544332 223346778888888888
Q ss_pred cHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHH
Q psy12891 433 HANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVREL 506 (567)
Q Consensus 433 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 506 (567)
+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 79 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 88999999999999998899999999999999999999999999998888888899999999999999998887
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=3.6e-28 Score=202.42 Aligned_cols=160 Identities=22% Similarity=0.212 Sum_probs=123.7
Q ss_pred CcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHH
Q psy12891 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQL 427 (567)
Q Consensus 348 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~ 427 (567)
+..+.|+|+.|+..|+.++++.|++..+......+..|.||||+|+..++.+++++|++.+.+. ...+..|.||||+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~ 81 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV---HAKDKGGLVPLHN 81 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC---CccCCCCCCHHHH
Confidence 3445566666666666666666666555555556666667777777777777777777765442 3334467889999
Q ss_pred HHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHH
Q psy12891 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELL 507 (567)
Q Consensus 428 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 507 (567)
|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. ++.+++++|+
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999776 8889999998
Q ss_pred hcCC
Q psy12891 508 SHVP 511 (567)
Q Consensus 508 ~~~~ 511 (567)
++++
T Consensus 161 ~~gA 164 (165)
T 3twr_A 161 GDAA 164 (165)
T ss_dssp TC--
T ss_pred hccc
Confidence 8753
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.4e-27 Score=195.48 Aligned_cols=153 Identities=26% Similarity=0.297 Sum_probs=119.4
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHc
Q psy12891 352 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG 431 (567)
Q Consensus 352 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~ 431 (567)
.|||+.|+..|+.+++++|++..+...+..+..|.||||+ +..++.+++++|++.+.+. ...+..|.||||+|+..
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP---NVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHT
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHc
Confidence 3556666666666666666655333345555566666666 5666666666666655442 23344788999999999
Q ss_pred CcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhc
Q psy12891 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSH 509 (567)
Q Consensus 432 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 509 (567)
|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++. ++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999 89999999999999999999999999999875
No 78
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=1.8e-27 Score=200.99 Aligned_cols=160 Identities=21% Similarity=0.198 Sum_probs=102.7
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHc
Q psy12891 352 QKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG 431 (567)
Q Consensus 352 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~ 431 (567)
.++|+.|+..|+.+++++|++.++..++..+..|.||||+|+..++.+++++|++.+.+. ...+..|.||||+|+..
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI---NVMNRGDDTPLHLAASH 82 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHc
Confidence 344444444444444444444444334444444555555555555555555555444332 22233566777777777
Q ss_pred CcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy12891 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP 511 (567)
Q Consensus 432 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~ 511 (567)
|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++++.
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~ 162 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162 (179)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred CCC
Q psy12891 512 GTV 514 (567)
Q Consensus 512 ~~~ 514 (567)
+..
T Consensus 163 ~~~ 165 (179)
T 3f6q_A 163 NLN 165 (179)
T ss_dssp CCS
T ss_pred Ccc
Confidence 654
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=2.8e-28 Score=215.99 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=116.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHH
Q psy12891 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462 (567)
Q Consensus 383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 462 (567)
..|.||||.|+..++.+.++.|++++.+.... ..+.||||.|+..|+.+++++|++.|++++.+|..|+||||+|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~----~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN----PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV 78 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC----chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 35778888888888888888888877664322 35679999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCC-CHHHHH-
Q psy12891 463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM-TPLHLA- 540 (567)
Q Consensus 463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~l~~A- 540 (567)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++. +..+..|. ||||+|
T Consensus 79 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------------~~~~~~~~~t~l~~a~ 145 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-------------FAMTYSDMQTAADKCE 145 (239)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------TCCCSSSCCCHHHHCC
T ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------------ceecCCCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999988765 34455555 999999
Q ss_pred -HHcCCHHHHHHHHhccCCccccccc
Q psy12891 541 -AYSGNENVVRLLLNSAGVQVDAQTQ 565 (567)
Q Consensus 541 -~~~~~~~~v~~Ll~~~g~~~~~~~~ 565 (567)
+..|+.+++++|+++ |++++.++.
T Consensus 146 ~~~~g~~~~~~~Ll~~-~a~~~~~~~ 170 (239)
T 1ycs_B 146 EMEEGYTQCSQFLYGV-QEKMGIMNK 170 (239)
T ss_dssp SSSTTCCCHHHHHHHH-HHHTTTTGG
T ss_pred HhhhccHHHHHHHHHh-hhccccccc
Confidence 888999999999986 999988754
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=3e-28 Score=215.84 Aligned_cols=162 Identities=23% Similarity=0.243 Sum_probs=116.1
Q ss_pred CCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q psy12891 7 GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTL 86 (567)
Q Consensus 7 ~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 86 (567)
...|.||||.|++.|+.+.+. .|+++|++++.. ..|.||||.|+..|+.++|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~---------------------------~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v 53 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGS---------------------------ERIAHGMRVKFN-PLPLALLLDSSLEGEFDLV 53 (239)
T ss_dssp ---------------------------------------------------------------CHHHHHHHHHHTCHHHH
T ss_pred CccccccCchhhhhhhHHHHH---------------------------HHhccCCCcccC-chhhHHHHHHHHcCCHHHH
Confidence 356999999999999987444 466777777743 6889999999999999999
Q ss_pred HHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccccc
Q psy12891 87 QLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSK 166 (567)
Q Consensus 87 ~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~ 166 (567)
++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+. .
T Consensus 54 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------~~~~d~~g~tpL~~A~~-----------~ 113 (239)
T 1ycs_B 54 QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---------VNAADSDGWTPLHCAAS-----------C 113 (239)
T ss_dssp HHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------TTCCCTTCCCHHHHHHH-----------T
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCccCCCCCCHHHHHHH-----------c
Confidence 999999999999999999999999999999999999999988 78889999999999998 4
Q ss_pred ccHHHHHHHHHcCCCccccccCCCccHHHHH--HhcCCHHHHHHHHHhccCc
Q psy12891 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYC--AVAGNNDVLTGMLEQMSGT 216 (567)
Q Consensus 167 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a--~~~~~~~~~~~Ll~~~~~~ 216 (567)
++.+++++|+++|++++..+...+.||+|+| +..|+.+++++|++.+...
T Consensus 114 ~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~ 165 (239)
T 1ycs_B 114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165 (239)
T ss_dssp TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcc
Confidence 5667799999999999988877766999998 7888899999999886654
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=6.3e-27 Score=187.48 Aligned_cols=130 Identities=24% Similarity=0.207 Sum_probs=115.2
Q ss_pred cCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhccccccccccc-CCcHHHH
Q psy12891 415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKL-GVTALHV 493 (567)
Q Consensus 415 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-g~t~l~~ 493 (567)
...+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. ++.+++++|+++|++++.+|.. |+||||+
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 84 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHD 84 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHH
Confidence 3445578899999999999999999999999999999999999999999 9999999999999999999988 8999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCc
Q psy12891 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 559 (567)
Q Consensus 494 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~ 559 (567)
|+..|+.+++++|++++++. +.+|..|.||||+|++.|+.+++++|+++ |+|
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~-------------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad 136 (136)
T 1d9s_A 85 AAREGFLDTLVVLHRAGARL-------------DVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTCCCC-------------CCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred HHHcCCHHHHHHHHHcCCCC-------------CccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 99999999999999987654 56678899999999999999999999986 775
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=3.5e-27 Score=193.99 Aligned_cols=135 Identities=24% Similarity=0.222 Sum_probs=111.2
Q ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCc-HHHHHHH
Q psy12891 418 RVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVT-ALHVAAY 496 (567)
Q Consensus 418 ~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t-~l~~A~~ 496 (567)
+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+.
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~ 87 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR 87 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence 446789999999999999999999999999999999999999985 89999999999999999999999998 9999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891 497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567 (567)
Q Consensus 497 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~ 567 (567)
.|+.+++++|++++.+. +.+|..|.||||+|++.|+.+++++|+++ |++++.++..|
T Consensus 88 ~~~~~~v~~Ll~~ga~~-------------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g 144 (156)
T 1bi7_B 88 EGFLDTLVVLHRAGARL-------------DVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHAR 144 (156)
T ss_dssp HTCHHHHHHHHHHTCCS-------------SCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C----------
T ss_pred CCCHHHHHHHHHcCCCC-------------cccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCc
Confidence 99999999999987654 56678899999999999999999999986 99999888754
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=2.3e-27 Score=199.50 Aligned_cols=163 Identities=13% Similarity=0.073 Sum_probs=137.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcH----HHHHHHHHcCCCCCCccCcCCcHHHH
Q psy12891 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHA----NVVRVLVKAGASCTDENKTGFTAVHL 460 (567)
Q Consensus 385 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~ 460 (567)
+.++|+.|+..|+.+.++.++..+.. ...+..|.||||+|+..++. +++++|+++|+++|.++..|+||||+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~----~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~ 81 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE----DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFP 81 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS----CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc----cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 34678888888888888888876533 12223688999999998875 59999999999999999999999999
Q ss_pred HHHcCc------HHHHHHHHhcccccccccccCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCCCCCCCCCcccccc
Q psy12891 461 AAQNGH------NQVLEEMRSSKALNVYSKKLGV-TALHVAAYFG-----QADTVRELLS-HVPGTVKSDPPTGASFLGE 527 (567)
Q Consensus 461 A~~~~~------~~~v~~Ll~~~~~~~~~~~~g~-t~l~~A~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~ 527 (567)
|+..++ .+++++|+++|++++.+|..|+ ||||+|+..+ +.+++++|++ ++++. +
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-------------~ 148 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-------------L 148 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-------------T
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-------------c
Confidence 999886 6789999999999999999999 9999999844 4579999999 77655 6
Q ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccc
Q psy12891 528 LGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQ 565 (567)
Q Consensus 528 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~ 565 (567)
.+|..|.||||+|++.|+.++|++|++. ..+.+++++
T Consensus 149 ~~d~~G~TpL~~A~~~~~~~~v~~L~~~-~~~~~~~~~ 185 (186)
T 3t8k_A 149 IKDKWGLTALEFVKRCQKPIALKMMEDY-IKKYNLKEN 185 (186)
T ss_dssp CCCTTSCCHHHHHHTTTCHHHHHHHHHH-HHHHTCCC-
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHH-HHHHhcccC
Confidence 7889999999999999999999999984 667776654
No 84
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=1.8e-25 Score=177.11 Aligned_cols=126 Identities=41% Similarity=0.569 Sum_probs=116.5
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC
Q psy12891 420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ 499 (567)
Q Consensus 420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 499 (567)
.|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCc
Q psy12891 500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 559 (567)
Q Consensus 500 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~ 559 (567)
.+++++|++++.+. +..|..|.|||++|+..|+.+++++|+++ |+|
T Consensus 81 ~~~~~~Ll~~g~~~-------------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad 126 (126)
T 1n0r_A 81 LEVVKLLLEAGADV-------------NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY 126 (126)
T ss_dssp HHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred HHHHHHHHHcCCCC-------------cccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence 99999999987654 55678899999999999999999999996 876
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=1.2e-25 Score=179.96 Aligned_cols=133 Identities=21% Similarity=0.278 Sum_probs=119.6
Q ss_pred CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhc
Q psy12891 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVN 139 (567)
Q Consensus 60 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~ 139 (567)
+++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++ ++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---------~~ 71 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---------PN 71 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---------SS
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---------CC
Confidence 67899999999999999999999999999999999999999999999999999 999999999999987 67
Q ss_pred ccccc-cccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhcc
Q psy12891 140 SVNED-GASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMS 214 (567)
Q Consensus 140 ~~~~~-~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 214 (567)
.++.. |.||||+|+.. ++.+++++|+++|++++..+. .|.|||++|+..++.+++++|+++++
T Consensus 72 ~~~~~~g~t~L~~A~~~-----------~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 72 CADPATLTRPVHDAARE-----------GFLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp CCBTTTTBCHHHHHHHH-----------TCHHHHHHHHHTCCCCCCCSS-SSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CcCCCCCCCHHHHHHHc-----------CCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 88888 99999999984 456779999999999887665 45888888888888888888888754
No 86
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=1.3e-25 Score=179.76 Aligned_cols=124 Identities=27% Similarity=0.404 Sum_probs=114.6
Q ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcC
Q psy12891 419 VTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG 498 (567)
Q Consensus 419 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~ 498 (567)
..+.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..+
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 555 (567)
Q Consensus 499 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 555 (567)
+.+++++|++++.+. +..|..|.|||++|++.|+.+++++|+++
T Consensus 92 ~~~~v~~Ll~~g~~~-------------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 92 HLEIAEVLLKHGADV-------------NAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp CHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred CHHHHHHHHHcCCCC-------------cCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 999999999987654 55688899999999999999999999985
No 87
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=7.5e-26 Score=190.28 Aligned_cols=160 Identities=14% Similarity=0.095 Sum_probs=133.2
Q ss_pred CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCC-CCCChHHHHHHHhCCH----
Q psy12891 9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT-DDGQTPVHAAAKYGNL---- 83 (567)
Q Consensus 9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~---- 83 (567)
.+.++|+.||+.|+.+.+.. ++..| ++.++ ..|+||||+|+..|+.
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~---------------------------l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~ 55 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLE---------------------------LFEKG--YEDKESVLKSNILYDVLRNNNDEARY 55 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHH---------------------------HHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHH
T ss_pred ccccHHHHHHHcCCHHHHHH---------------------------HHhcC--cccccccCCCCHHHHHHHcCCcchHH
Confidence 35789999999999886554 34444 34444 6799999999999975
Q ss_pred HHHHHHHHcCCCCCCCCCCCCChhHHHHhcCc------hhHHHHHHHhhhhhhhhHHhhhhcccccccc-cHHHHHHHhC
Q psy12891 84 VTLQLLLEDGGDPMYKNKIGETPLHLASRNCK------AEVVDLLIQFVQNISQEKVLEYVNSVNEDGA-SALHYACQVT 156 (567)
Q Consensus 84 ~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~------~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~-t~L~~a~~~~ 156 (567)
+++++|+++|++++.+|..|+||||+|+..++ .+++++|+++|++ ++.+|..|. ||||+|+..+
T Consensus 56 ~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad---------in~~d~~g~ttpLh~A~~~~ 126 (186)
T 3t8k_A 56 KISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD---------ITALYKPYKIVVFKNIFNYF 126 (186)
T ss_dssp HHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------SSSCBGGGTBCTTGGGGGCC
T ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC---------CCccCCCcCchHHHHHHHcC
Confidence 59999999999999999999999999999987 5789999999998 788999999 9999999844
Q ss_pred CcccccccccccHHHHHHHHH-cCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhc
Q psy12891 157 KAELIPITSKEDQKTVKLLLE-AGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM 213 (567)
Q Consensus 157 ~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 213 (567)
..+ .+..+++++|++ +|++++..+.. |.||||+|+..|+.+++++|.+..
T Consensus 127 ~~~------~~~~~iv~~Ll~~~gad~~~~d~~-G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 127 VDE------NEMIPLYKLIFSQSGLQLLIKDKW-GLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp SCH------HHHHHHHHHHHTSTTCCTTCCCTT-SCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCh------hhHHHHHHHHHHhcCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHHHH
Confidence 322 345678999999 99999877665 489999999999999999888764
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=3e-25 Score=177.68 Aligned_cols=128 Identities=27% Similarity=0.390 Sum_probs=114.4
Q ss_pred ccCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHH
Q psy12891 5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLV 84 (567)
Q Consensus 5 ~~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 84 (567)
.....+.||||+||..|+.+.+. +|+++|++++.++..|+||||+|+..|+.+
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~---------------------------~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 61 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVR---------------------------ILMANGADVNAKDEYGLTPLYLATAHGHLE 61 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHH---------------------------HHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred cccccccHHHHHHHHhCCHHHHH---------------------------HHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence 46678899999999999988443 578889999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccc
Q psy12891 85 TLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT 164 (567)
Q Consensus 85 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~ 164 (567)
++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ ++.++..|.|||++|+.
T Consensus 62 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------~~~~~~~g~tpl~~A~~---------- 122 (136)
T 2jab_A 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD---------VNAQDKFGKTAFDISIG---------- 122 (136)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHHHH----------
T ss_pred HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CcCcCCCCCCHHHHHHH----------
Confidence 99999999999999999999999999999999999999999988 67889999999999998
Q ss_pred ccccHHHHHHHHHcC
Q psy12891 165 SKEDQKTVKLLLEAG 179 (567)
Q Consensus 165 ~~~~~~~v~~Ll~~g 179 (567)
.++.+++++|+++|
T Consensus 123 -~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 123 -NGNEDLAEILQKLN 136 (136)
T ss_dssp -TTCHHHHHHHHHC-
T ss_pred -CCCHHHHHHHHHcC
Confidence 45667799999876
No 89
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2.7e-25 Score=182.64 Aligned_cols=143 Identities=25% Similarity=0.283 Sum_probs=96.1
Q ss_pred hhhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q psy12891 314 LTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 393 (567)
Q Consensus 314 ~~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~ 393 (567)
.+..+.|||++|+..|+.+++++|+++|++++..+..|.||||+|+ .++.+++++|++.+.+ ++.
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~------------- 72 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNC------------- 72 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCC-------------
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCC-------------
Confidence 3455677777777777777777777777777777777777777664 6666666666665543 222
Q ss_pred HcCCHHHHHHHHhcCCCcccccCCCCCCCC-HHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHH
Q psy12891 394 MQGSVGVIEELMKFDRSGVISARNRVTEAT-PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 472 (567)
Q Consensus 394 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 472 (567)
.+..|.| |||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++
T Consensus 73 -----------------------~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~ 129 (156)
T 1bi7_B 73 -----------------------ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129 (156)
T ss_dssp -----------------------CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred -----------------------cCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHH
Confidence 2235566 8888888888899999999999999999999999999999999999999
Q ss_pred HHhcccccccccccCCcHHHHH
Q psy12891 473 MRSSKALNVYSKKLGVTALHVA 494 (567)
Q Consensus 473 Ll~~~~~~~~~~~~g~t~l~~A 494 (567)
|+++|++++.++..|.||.+.+
T Consensus 130 Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 130 LRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HSSCC-----------------
T ss_pred HHHcCCCCCccCcCcCcccccC
Confidence 9999999999888888887644
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=1.9e-24 Score=171.18 Aligned_cols=126 Identities=45% Similarity=0.646 Sum_probs=115.4
Q ss_pred CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q psy12891 9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQL 88 (567)
Q Consensus 9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 88 (567)
.|+||||+|+..|+.+.+. +|+++|++++..+..|.||||+|+..|+.+++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~---------------------------~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 53 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVK---------------------------LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHH---------------------------HHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHH---------------------------HHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHH
Confidence 4899999999999977443 5778888999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccccccc
Q psy12891 89 LLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKED 168 (567)
Q Consensus 89 Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~ 168 (567)
|+++|++++.++..|.||||+|+..++.+++++|+++|++ ++.++..|.|||++|+. .++
T Consensus 54 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~---------~~~~~~~g~t~l~~A~~-----------~~~ 113 (126)
T 1n0r_A 54 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---------VNAKDKNGRTPLHLAAR-----------NGH 113 (126)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHHHH-----------TTC
T ss_pred HHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCC---------CcccCCCCCCHHHHHHH-----------cCc
Confidence 9999999999999999999999999999999999999887 67889999999999998 456
Q ss_pred HHHHHHHHHcCCC
Q psy12891 169 QKTVKLLLEAGAD 181 (567)
Q Consensus 169 ~~~v~~Ll~~g~~ 181 (567)
.+++++|+++|++
T Consensus 114 ~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 114 LEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC
Confidence 7779999999985
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=1.5e-24 Score=174.09 Aligned_cols=127 Identities=24% Similarity=0.268 Sum_probs=112.3
Q ss_pred CCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHH
Q psy12891 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAA 495 (567)
Q Consensus 416 ~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~ 495 (567)
..+..|.||||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 84 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA 84 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q psy12891 496 YFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 555 (567)
Q Consensus 496 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 555 (567)
..++.+++++|++++++. +.+|..|.|||++|+..++.+++++|.++
T Consensus 85 ~~~~~~~v~~Ll~~ga~~-------------~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 85 KNGHVDIVKLLLSYGASR-------------NAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HTTCHHHHHHHHHTTCCT-------------TCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HcCCHHHHHHHHHcCCCC-------------CCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 999999999999987654 56788999999999999999999888775
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.90 E-value=4.1e-24 Score=180.75 Aligned_cols=140 Identities=26% Similarity=0.345 Sum_probs=123.0
Q ss_pred CCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q psy12891 7 GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTL 86 (567)
Q Consensus 7 ~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 86 (567)
+..|+||||+||..|+.+.+. .|++ |+++|.++..|+||||+|+..|+.+++
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~---------------------------~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v 92 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALS---------------------------QLLE-DRDVDAVDENGRTALLFVAGLGSDKCV 92 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHH---------------------------HHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHH---------------------------HHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence 457889999999999987444 4666 888999999999999999999999999
Q ss_pred HHHHHcCCCCCCCC-CCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccc
Q psy12891 87 QLLLEDGGDPMYKN-KIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITS 165 (567)
Q Consensus 87 ~~Ll~~ga~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~ 165 (567)
++|+++|++++.++ ..|+||||+|+..|+.+++++|+++|++ ++.++..|.|||++|+..++.
T Consensus 93 ~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---------~~~~d~~g~tpl~~A~~~~~~------- 156 (183)
T 3deo_A 93 RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---------IEVEDERGLTALELAREILKT------- 156 (183)
T ss_dssp HHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC---------TTCCCTTSCCHHHHHHHHHHT-------
T ss_pred HHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC---------CcCCCCCCCCHHHHHHHhccC-------
Confidence 99999999999888 8899999999999999999999999988 688899999999999874322
Q ss_pred cccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHh
Q psy12891 166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQ 212 (567)
Q Consensus 166 ~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~ 212 (567)
....+++++|+..|..+++++|.++
T Consensus 157 ----------------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 ----------------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ----------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ----------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 1237899999999999999998764
No 93
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=4.6e-24 Score=187.01 Aligned_cols=134 Identities=25% Similarity=0.296 Sum_probs=107.8
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhc-ccccccccccCCcHHHHHHHcC
Q psy12891 420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSS-KALNVYSKKLGVTALHVAAYFG 498 (567)
Q Consensus 420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~l~~A~~~~ 498 (567)
.|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~ 151 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG 151 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence 567999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567 (567)
Q Consensus 499 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~ 567 (567)
+.+++++|++++++. +.+|..|.|||++|+..|+.++++.|+++ |++++.++.+|
T Consensus 152 ~~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~~ 206 (222)
T 3ehr_A 152 YADIVQLLLAKGART-------------DLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAED 206 (222)
T ss_dssp CHHHHHHHHHHTCCS-------------CCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred CHHHHHHHHHcCCCC-------------ccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchhh
Confidence 999999999987764 56788899999999999999999999986 99998888764
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=4.2e-24 Score=171.43 Aligned_cols=132 Identities=30% Similarity=0.384 Sum_probs=113.7
Q ss_pred CCCCCCCCCCCChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhc
Q psy12891 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVN 139 (567)
Q Consensus 60 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~ 139 (567)
|+|+ .++.+|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++ ++
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------~~ 70 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---------VN 70 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---------TT
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---------cc
Confidence 6788 7889999999999999999999999999999999999999999999999999999999999887 67
Q ss_pred ccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhc
Q psy12891 140 SVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM 213 (567)
Q Consensus 140 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 213 (567)
.++..|.||||+|+.. ++.+++++|+++|++++..+.. |.||+++|+..+..++++++.+..
T Consensus 71 ~~~~~g~t~L~~A~~~-----------~~~~~v~~Ll~~ga~~~~~~~~-g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 71 TTGYQNDSPLHDAAKN-----------GHVDIVKLLLSYGASRNAVNIF-GLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp CCCGGGCCHHHHHHHT-----------TCHHHHHHHHHTTCCTTCCCTT-SCCGGGGCCCHHHHHHHSCC----
T ss_pred CcCCCCCCHHHHHHHc-----------CCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHhhccHHHHHhhccccc
Confidence 8899999999999984 5667799999999999876554 589999998888888877766543
No 95
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.90 E-value=1.3e-23 Score=186.34 Aligned_cols=140 Identities=26% Similarity=0.349 Sum_probs=119.2
Q ss_pred CCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHH
Q psy12891 8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQ 87 (567)
Q Consensus 8 ~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~ 87 (567)
..|+||||+||+.|+.+.| +.|++ |+++|.++..|+||||+|+..|+.++|+
T Consensus 43 ~~g~t~L~~A~~~g~~~~v---------------------------~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~ 94 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQAL---------------------------SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVR 94 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHH---------------------------HHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHH---------------------------HHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHH
Confidence 3577888888888877643 34667 8888999999999999999999999999
Q ss_pred HHHHcCCCCCCCC-CCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCccccccccc
Q psy12891 88 LLLEDGGDPMYKN-KIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSK 166 (567)
Q Consensus 88 ~Ll~~ga~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~ 166 (567)
+|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+..+..
T Consensus 95 ~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------~~~~d~~g~t~l~~A~~~~~~-------- 157 (244)
T 3ui2_A 95 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---------IEVEDERGLTALELAREILKT-------- 157 (244)
T ss_dssp HHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC---------TTCCCTTCCCHHHHHHHHHTT--------
T ss_pred HHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---------CCCCCCCCCcHHHHHHHHHhc--------
Confidence 9999999999888 7899999999999999999999999988 688899999999999863211
Q ss_pred ccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhc
Q psy12891 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM 213 (567)
Q Consensus 167 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 213 (567)
..+.+||++|+..|+.+++++|++..
T Consensus 158 ---------------------~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 158 ---------------------TPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp ---------------------CCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------cCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 23488999999999999999998864
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=7.8e-24 Score=166.18 Aligned_cols=113 Identities=27% Similarity=0.299 Sum_probs=102.0
Q ss_pred cCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHH
Q psy12891 6 SGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVT 85 (567)
Q Consensus 6 ~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~ 85 (567)
.++.|.||||+|+..|+.+.+. +|++.|++++.++..|+||||+|+..|+.++
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~---------------------------~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 55 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVK---------------------------DYVAKGEDVNRTLEGGRKPLHYAADCGQLEI 55 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHH---------------------------HHHHTTCCTTSCCTTSSCHHHHHHHTTCHHH
T ss_pred cccccchHHHHHHHcCCHHHHH---------------------------HHHHcCCCcCccCCCCCcHHHHHHHcCCHHH
Confidence 4678999999999999988444 4788899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHH
Q psy12891 86 LQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQ 154 (567)
Q Consensus 86 v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~ 154 (567)
+++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.++..|.|||++|..
T Consensus 56 v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---------~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 56 LEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD---------KTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---------TTCCCTTSCCHHHHCCC
T ss_pred HHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CCCcCCCCCCHHHHhCC
Confidence 9999999999999999999999999999999999999999988 68889999999999954
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=3.1e-23 Score=175.34 Aligned_cols=139 Identities=25% Similarity=0.287 Sum_probs=117.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CcCCcHHHHH
Q psy12891 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLA 461 (567)
Q Consensus 383 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A 461 (567)
..|.||||.|+..|+.+++++|++ +.+ .+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|
T Consensus 42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 42 SEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTT-TSC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh-cCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 356678888888888888888887 433 33445578899999999999999999999999999888 8899999999
Q ss_pred HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q psy12891 462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541 (567)
Q Consensus 462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~ 541 (567)
+..|+.+++++|+++|++++.+|..|+||||+|+..++. ..+.++|++|+
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------------------~~~~~~l~~a~ 167 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------------------TPKGNPMQFGR 167 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------------------CCCCSHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------------------cccccHHHHHH
Confidence 999999999999999999999999999999999864322 23568999999
Q ss_pred HcCCHHHHHHHHhc
Q psy12891 542 YSGNENVVRLLLNS 555 (567)
Q Consensus 542 ~~~~~~~v~~Ll~~ 555 (567)
+.|+.+++++|.++
T Consensus 168 ~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 168 RIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HcCHHHHHHHHHHh
Confidence 99999999999875
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=1.9e-23 Score=163.98 Aligned_cols=112 Identities=22% Similarity=0.240 Sum_probs=95.8
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC
Q psy12891 420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ 499 (567)
Q Consensus 420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 499 (567)
.|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..++
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~ 85 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence 56689999999999999999999999998888889999999999999999999999999888888889999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcC
Q psy12891 500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544 (567)
Q Consensus 500 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~ 544 (567)
.+++++|++++++. +.+|..|.|||++|...+
T Consensus 86 ~~~v~~Ll~~ga~~-------------~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 86 VSCVKLLLSKGADK-------------TVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HHHHHHHHHTTCCT-------------TCCCTTSCCHHHHCCCHH
T ss_pred HHHHHHHHHcCCCC-------------CCcCCCCCCHHHHhCCHH
Confidence 99999999887654 556788899999884433
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=2.3e-23 Score=184.68 Aligned_cols=138 Identities=25% Similarity=0.291 Sum_probs=113.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcc-CcCCcHHHHHH
Q psy12891 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAVHLAA 462 (567)
Q Consensus 384 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~ 462 (567)
.|.||||.|+..|+.+++++|++ +.+ .+..+..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 46677777777777777777777 433 23344578899999999999999999999999998887 77999999999
Q ss_pred HcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHH
Q psy12891 463 QNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542 (567)
Q Consensus 463 ~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~ 542 (567)
..|+.+++++|+++|++++.+|..|+||||+|+..++ ...+.|||++|+.
T Consensus 120 ~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------------------~~~~~~~l~~a~~ 169 (244)
T 3ui2_A 120 GYVRPEVVEALVELGADIEVEDERGLTALELAREILK------------------------------TTPKGNPMQFGRR 169 (244)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------------------TCCCSSHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------------------ccCCCCHHHHHHH
Confidence 9999999999999999999999999999999985221 2356799999999
Q ss_pred cCCHHHHHHHHhc
Q psy12891 543 SGNENVVRLLLNS 555 (567)
Q Consensus 543 ~~~~~~v~~Ll~~ 555 (567)
.|+.+++++|+++
T Consensus 170 ~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 170 IGLEKVINVLEGQ 182 (244)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHh
Confidence 9999999999885
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=182.99 Aligned_cols=143 Identities=19% Similarity=0.123 Sum_probs=121.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccc---cCCCCCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCCccCcCCcHH
Q psy12891 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVIS---ARNRVTEATPLQLAAEG---GHANVVRVLVKAGASCTDENKTGFTAV 458 (567)
Q Consensus 385 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l 458 (567)
..++|+.|+..++.+.++.|++.+.+.... ...+..|.||||+|+.. ++.+++++|+++|+++|.+|..|+|||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL 230 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 230 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 456799999999999999999987764321 11456889999999997 899999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHH
Q psy12891 459 HLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLH 538 (567)
Q Consensus 459 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~ 538 (567)
|+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++++++ .|.||||
T Consensus 231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------------------~g~tpLh 291 (301)
T 2b0o_E 231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------------------TFAFPLH 291 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------------------TTSSCCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------------------CCCChhH
Confidence 999999999999999999999999999999999999999999999999998542 4789999
Q ss_pred HHHHcCCH
Q psy12891 539 LAAYSGNE 546 (567)
Q Consensus 539 ~A~~~~~~ 546 (567)
+|+..|+.
T Consensus 292 ~A~~~g~~ 299 (301)
T 2b0o_E 292 VDYSWVIS 299 (301)
T ss_dssp --------
T ss_pred HHHhcCCc
Confidence 99998874
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=5.4e-23 Score=187.38 Aligned_cols=135 Identities=22% Similarity=0.220 Sum_probs=111.4
Q ss_pred hHhhhcCchHHHHHHHhcCCCCCC------CCCCCChHHHHHHHh---CCHHHHHHHHHcCCCCCCCCCCCCChhHHHHh
Q psy12891 42 IAARVKDGDRCALMLLKSGAGPNL------TTDDGQTPVHAAAKY---GNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112 (567)
Q Consensus 42 ~~a~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~ 112 (567)
..|+..++.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 156 ~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~ 235 (301)
T 2b0o_E 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 235 (301)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHH
T ss_pred hhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence 455556666667778888888887 688999999999997 89999999999999999999999999999999
Q ss_pred cCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCcc
Q psy12891 113 NCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHET 192 (567)
Q Consensus 113 ~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~ 192 (567)
.|+.+++++|+++|++ ++.+|..|.|||++|+.. ++.+++++|+++|++ .+.|
T Consensus 236 ~g~~~~v~~Ll~~gad---------~~~~d~~G~TpL~~A~~~-----------~~~~iv~~Ll~~ga~-------~g~t 288 (301)
T 2b0o_E 236 YNQPDCLKLLLKGRAL---------VGTVNEAGETALDIARKK-----------HHKECEELLEQAQAG-------TFAF 288 (301)
T ss_dssp TTCHHHHHHHHHTTCC---------CSCCCTTSCCHHHHHHHH-----------TCHHHHHHHHHHHHH-------TTSS
T ss_pred cCCHHHHHHHHHcCCC---------CCCcCCCCCCHHHHHHHc-----------CCHHHHHHHHHhcCC-------CCCC
Confidence 9999999999999988 688899999999999984 456779999999876 2488
Q ss_pred HHHHHHhcCCH
Q psy12891 193 AFHYCAVAGNN 203 (567)
Q Consensus 193 ~l~~a~~~~~~ 203 (567)
|||+|+..|+.
T Consensus 289 pLh~A~~~g~~ 299 (301)
T 2b0o_E 289 PLHVDYSWVIS 299 (301)
T ss_dssp CCC--------
T ss_pred hhHHHHhcCCc
Confidence 99999887753
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=1.3e-21 Score=176.31 Aligned_cols=124 Identities=23% Similarity=0.204 Sum_probs=84.3
Q ss_pred CHHHHHHHcCcHHHHHHHHHcCCCCC------CccCcCCcHHHHHHHc---CcHHHHHHHHhcccccccccccCCcHHHH
Q psy12891 423 TPLQLAAEGGHANVVRVLVKAGASCT------DENKTGFTAVHLAAQN---GHNQVLEEMRSSKALNVYSKKLGVTALHV 493 (567)
Q Consensus 423 t~L~~A~~~~~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~ 493 (567)
++|+.|+..|+.+.++.+++.|++++ ..+..|+||||+|+.. ++.+++++|+++|++++.+|..|+||||+
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~ 211 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY 211 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHH
Confidence 56677777777777777777776633 3356677777777776 66777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccCCcc
Q psy12891 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQV 560 (567)
Q Consensus 494 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~ 560 (567)
|+..|+.+++++|++++++. +.+|..|.||||+|+..|+.+++++|+++ |++.
T Consensus 212 A~~~g~~~~v~~Ll~~gad~-------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~ 264 (278)
T 1dcq_A 212 CCLTDNAECLKLLLRGKASI-------------EIANESGETPLDIAKRLKHEHCEELLTQA-LSGR 264 (278)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-HTTC
T ss_pred HHHcCCHHHHHHHHHcCCCC-------------CCccCCCCCHHHHHHHcCCHHHHHHHHHc-CCCC
Confidence 77777777777777766543 45566677777777777777777777765 5543
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.88 E-value=5.7e-23 Score=180.00 Aligned_cols=133 Identities=23% Similarity=0.207 Sum_probs=110.3
Q ss_pred CCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHH
Q psy12891 7 GKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTL 86 (567)
Q Consensus 7 ~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v 86 (567)
+..|+||||+||..|+.+.|. +|++.|++++.++..|+||||+||..|+.++|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~---------------------------~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 122 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLR---------------------------ECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHH---------------------------HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred ccccccccccccccCcHHHHH---------------------------HHHhCCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence 456899999999999977443 57889999999999999999999999999999
Q ss_pred HHHHHc-CCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccc
Q psy12891 87 QLLLED-GGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITS 165 (567)
Q Consensus 87 ~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~ 165 (567)
++|++. |++++.+|..|.||||+|+..|+.+++++|+++|++ ++.++..|.|||++|+.
T Consensus 123 ~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---------~~~~~~~g~t~l~~A~~----------- 182 (222)
T 3ehr_A 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR---------TDLRNIEKKLAFDMATN----------- 182 (222)
T ss_dssp HHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---------SCCCCTTSCCHHHHCCS-----------
T ss_pred HHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------CccccCCCCCHHHHhcc-----------
Confidence 999999 999999999999999999999999999999999988 78889999999999987
Q ss_pred cccHHHHHHHHHcCCCccccc
Q psy12891 166 KEDQKTVKLLLEAGADVSLQT 186 (567)
Q Consensus 166 ~~~~~~v~~Ll~~g~~~~~~~ 186 (567)
.+..++++.|++.|+......
T Consensus 183 ~~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 183 AACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp HHHHHHHC-------------
T ss_pred hhHHHHHHHHhccchhhhccc
Confidence 567778999999998776543
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=3e-22 Score=148.12 Aligned_cols=92 Identities=46% Similarity=0.634 Sum_probs=84.8
Q ss_pred CCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHHHHHH
Q psy12891 9 LRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQL 88 (567)
Q Consensus 9 ~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 88 (567)
.|+||||+||..|+.+.+ ++|++.|+++|.++..|+||||+|+..|+.+++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v---------------------------~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~ 53 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVV---------------------------KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53 (93)
T ss_dssp --CCHHHHHHHHTCHHHH---------------------------HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHH---------------------------HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHH
Confidence 489999999999997743 35888999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhh
Q psy12891 89 LLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127 (567)
Q Consensus 89 Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~ 127 (567)
|+++|++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 54 Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 54 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999875
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=9.4e-22 Score=177.12 Aligned_cols=195 Identities=17% Similarity=0.115 Sum_probs=144.4
Q ss_pred hhcCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCcCCCCHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q psy12891 315 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA-TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 393 (567)
Q Consensus 315 ~~~~~t~L~~a~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~l~~a~ 393 (567)
|.++.+.++.+...|+..+.+++...-.+... +-..+....+ ....-..+++................++|+.|+
T Consensus 63 d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~----~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~ 138 (278)
T 1dcq_A 63 DVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIA----RKDYITAKYMERRYARKKHADTAAKLHSLCEAV 138 (278)
T ss_dssp SCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHH----HHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHH----HHHHHHHHHHHhhcccccccccchhhhhhhhHh
Confidence 45677889999999987776665443211111 1011112211 111111223222222111111122346899999
Q ss_pred HcCCHHHHHHHHhcCCCccc---ccCCCCCCCCHHHHHHHc---CcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcH
Q psy12891 394 MQGSVGVIEELMKFDRSGVI---SARNRVTEATPLQLAAEG---GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 467 (567)
Q Consensus 394 ~~~~~~~~~~ll~~~~~~~~---~~~~~~~~~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 467 (567)
..++.+.++.+++.+.+... ....+..|.||||+|+.. |+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus 139 ~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~ 218 (278)
T 1dcq_A 139 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA 218 (278)
T ss_dssp HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence 99999999999998776432 334456899999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q psy12891 468 QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 513 (567)
Q Consensus 468 ~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~ 513 (567)
+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++.
T Consensus 219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999997754
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=1.1e-21 Score=145.12 Aligned_cols=92 Identities=40% Similarity=0.531 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCC
Q psy12891 420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ 499 (567)
Q Consensus 420 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~ 499 (567)
.|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q psy12891 500 ADTVRELLSHVP 511 (567)
Q Consensus 500 ~~~~~~Ll~~~~ 511 (567)
.+++++|+++++
T Consensus 81 ~~~~~~Ll~~ga 92 (93)
T 1n0q_A 81 LEVVKLLLEAGA 92 (93)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999865
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=3.3e-21 Score=189.35 Aligned_cols=126 Identities=19% Similarity=0.152 Sum_probs=76.6
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccc---cCCCCCCCCHHHHHHH---cCcHHHHHHHHHcCCCCCCccCcCCcHHHH
Q psy12891 387 TCAHIAAMQGSVGVIEELMKFDRSGVIS---ARNRVTEATPLQLAAE---GGHANVVRVLVKAGASCTDENKTGFTAVHL 460 (567)
Q Consensus 387 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~t~L~~A~~---~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~ 460 (567)
+.|+.|+..|+.+.++.|++.+.+.... ...+..|.||||+||. .|+.+++++|+++|+++|.+|..|+||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 4566666666666666666665543221 1123456666666644 566666666666666666666666666666
Q ss_pred HHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy12891 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPG 512 (567)
Q Consensus 461 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~ 512 (567)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++++++
T Consensus 214 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~ 265 (497)
T 3lvq_E 214 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 265 (497)
T ss_dssp HTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 6666666666666666666666666666666666666666666666666554
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=3.5e-21 Score=189.20 Aligned_cols=130 Identities=24% Similarity=0.255 Sum_probs=107.8
Q ss_pred hHhhhcCchHHHHHHHhcCCCCCCC------CCCCChHHHHHHH---hCCHHHHHHHHHcCCCCCCCCCCCCChhHHHHh
Q psy12891 42 IAARVKDGDRCALMLLKSGAGPNLT------TDDGQTPVHAAAK---YGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112 (567)
Q Consensus 42 ~~a~~~~~~~~~~~Ll~~g~~~~~~------~~~g~t~L~~A~~---~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~ 112 (567)
+.|+..++.++++.|++.|+|+|.. +..|.||||+||. .|+.++|++|+++|+++|.+|..|+||||+|+.
T Consensus 137 ~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~ 216 (497)
T 3lvq_E 137 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216 (497)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTT
T ss_pred HHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Confidence 4566666666777788899998877 8899999999976 999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHHHHHHHhCCcccccccccccHHHHHHHHHcCCCccccccCCCcc
Q psy12891 113 NCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHET 192 (567)
Q Consensus 113 ~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~ 192 (567)
.|+.++|++|+++|++ ++.+|..|.||||+|+. .++.+++++|+++|++++ .+
T Consensus 217 ~g~~~~v~~Ll~~ga~---------~~~~d~~g~tpl~~A~~-----------~~~~~~~~~Ll~~ga~~~-------~~ 269 (497)
T 3lvq_E 217 YNQPDCLKLLLKGRAL---------VGTVNEAGETALDIARK-----------KHHKECEELLEQAQAGTF-------AF 269 (497)
T ss_dssp TTCHHHHHHHHHTCCC---------CSCCCTTCCCHHHHHHH-----------TTCHHHHHHHHHTCC------------
T ss_pred cCCHHHHHHHHHcCCC---------CCCcCCCCCCHHHHHHH-----------cCCHHHHHHHHHhCCCCC-------CC
Confidence 9999999999999998 78899999999999998 456777999999999987 45
Q ss_pred HHHHHH
Q psy12891 193 AFHYCA 198 (567)
Q Consensus 193 ~l~~a~ 198 (567)
|+|.+.
T Consensus 270 ~~h~~~ 275 (497)
T 3lvq_E 270 PLHVDY 275 (497)
T ss_dssp ------
T ss_pred cceeec
Confidence 777654
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=2.7e-21 Score=149.64 Aligned_cols=109 Identities=37% Similarity=0.445 Sum_probs=96.8
Q ss_pred ccCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHH
Q psy12891 5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLV 84 (567)
Q Consensus 5 ~~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 84 (567)
..++.|+||||+||..|+.+.+ ++|+++|++++.++..|+||||+|+..|+.+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~---------------------------~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~ 56 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEV---------------------------KKLLSKGADVNARSKDGNTPLHLAAKNGHAE 56 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHH---------------------------HHHTTTTCCSSCCCSSSCCTTHHHHTTTCHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHH---------------------------HHHHHcCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 4688999999999999997743 3577888999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccccccHH
Q psy12891 85 TLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASAL 149 (567)
Q Consensus 85 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~t~L 149 (567)
++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++ ++.++..+.+|-
T Consensus 57 ~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~---------~n~~~~~~~~~~ 112 (115)
T 2l6b_A 57 IVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD---------VNARSWGSSHHH 112 (115)
T ss_dssp HHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSS---------HHHHSCCCC---
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---------CCcCCccccccc
Confidence 99999999999999999999999999999999999999999998 566677777663
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=1.7e-20 Score=174.42 Aligned_cols=167 Identities=16% Similarity=0.073 Sum_probs=113.9
Q ss_pred CCCCcHHHHHHHc-CCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHH
Q psy12891 383 KDGNTCAHIAAMQ-GSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461 (567)
Q Consensus 383 ~~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 461 (567)
..+.++||.|+.. ++.+++++|++.+.+..... .+..|.||||+|+..|+.+++++|+++|+++|..|..|+||||+|
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~-~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A 275 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVN-GGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCC-TTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccc-cccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 3556899999999 99999999999887744322 125788999999999999999999999999999999999999999
Q ss_pred HHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHH
Q psy12891 462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541 (567)
Q Consensus 462 ~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~ 541 (567)
+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+..+..... ....+..+.|+++.+.
T Consensus 276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~----------~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAE----------AAQGQAGDETYLDIFR 345 (368)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------------
T ss_pred HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc----------ccccCCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999987643321 1234667888888887
Q ss_pred HcCC--HHHHHHHHhccCCccc
Q psy12891 542 YSGN--ENVVRLLLNSAGVQVD 561 (567)
Q Consensus 542 ~~~~--~~~v~~Ll~~~g~~~~ 561 (567)
.... .+-.+.|... +.+++
T Consensus 346 ~~~~~~~~~~ekl~r~-~~~~~ 366 (368)
T 3jue_A 346 DFSLMASDDPEKLSRR-SHDLH 366 (368)
T ss_dssp ----------------------
T ss_pred HHHhhcCCCHHHHHhc-CCCcC
Confidence 6553 3445555553 55544
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=2e-20 Score=173.94 Aligned_cols=143 Identities=16% Similarity=0.110 Sum_probs=93.9
Q ss_pred CCCCHHHHHHHc-CCHHHHHHHHHhCCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHH
Q psy12891 350 QGQKPIHVAAQN-NFPEVAQIFLRAHPSLVTATT--KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ 426 (567)
Q Consensus 350 ~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~ 426 (567)
.+.|+||.|+.. ++.++++.|++.+.+ ++..+ ..|.||||+|+..++.+++++|++++.+. +..+..|.||||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv---n~~d~~G~TpLh 273 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV---NQADSAGRGPLH 273 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHH
Confidence 445678888877 788888888877766 45555 67778888888888888888888776553 334456778888
Q ss_pred HHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhccc---ccccccccCCcHHHHHHH
Q psy12891 427 LAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA---LNVYSKKLGVTALHVAAY 496 (567)
Q Consensus 427 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~---~~~~~~~~g~t~l~~A~~ 496 (567)
+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+..+. .....+..+.|+++++..
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888877664 222334455566665543
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.83 E-value=1.1e-20 Score=146.30 Aligned_cols=104 Identities=36% Similarity=0.442 Sum_probs=69.0
Q ss_pred ccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccC
Q psy12891 450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELG 529 (567)
Q Consensus 450 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~ 529 (567)
+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|++++++. +..
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------------~~~ 71 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-------------NAR 71 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-------------TCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-------------ccc
Confidence 4556666666666666666666666666666666666666666666666666666666665443 344
Q ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhccCCccccccccC
Q psy12891 530 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567 (567)
Q Consensus 530 ~~~g~t~l~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~~ 567 (567)
|..|.|||++|+..|+.+++++|+++ |+|+|.++.+|
T Consensus 72 d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~ 108 (115)
T 2l6b_A 72 SKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGS 108 (115)
T ss_dssp CTTCCCTTHHHHTTTCHHHHHHHHTT-SSSHHHHSCCC
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCcCCccc
Confidence 56677777777777777777777764 77777766554
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.78 E-value=6.4e-19 Score=134.48 Aligned_cols=91 Identities=31% Similarity=0.485 Sum_probs=82.5
Q ss_pred ccCCCCCChhhHHhhcCChhHHHHHHhhcCCCCChhhhHhhhcCchHHHHHHHhcCCCCCCCCCCCChHHHHHHHhCCHH
Q psy12891 5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLV 84 (567)
Q Consensus 5 ~~~~~~~t~L~~A~~~g~~~~v~~~L~~~g~~~~~~~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~ 84 (567)
..+..|+||||+||..|+.+.+ ++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v---------------------------~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~ 71 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEV---------------------------RILMANGADVAAKDKNGSTPLHLAARNGHLE 71 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHH---------------------------HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred ccCCccchHHHHHHHcCCHHHH---------------------------HHHHHcCCCCCccCCCCCCHHHHHHHcCCHH
Confidence 4678899999999999998744 3578889999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHH
Q psy12891 85 TLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122 (567)
Q Consensus 85 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~L 122 (567)
++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus 72 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 72 VVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.76 E-value=1.5e-18 Score=132.38 Aligned_cols=92 Identities=30% Similarity=0.390 Sum_probs=84.7
Q ss_pred cCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcCcHHHHHHHHhcccccccccccCCcHHHHH
Q psy12891 415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVA 494 (567)
Q Consensus 415 ~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A 494 (567)
...+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence 34455788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHH
Q psy12891 495 AYFGQADTVREL 506 (567)
Q Consensus 495 ~~~~~~~~~~~L 506 (567)
+..++.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 999999999987
No 115
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=81.02 E-value=4.7 Score=39.08 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhhhhhhHHhhhhcccccc-cccHHHHHHHhCCccccc
Q psy12891 84 VTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNED-GASALHYACQVTKAELIP 162 (567)
Q Consensus 84 ~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~-~~t~L~~a~~~~~~~~~~ 162 (567)
++++.+.+.|..++.... .+.+...++.|+.+-+..+++.-... .+.. +.. -.+.+...+..|..+
T Consensus 91 ~lf~~M~~~G~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~-------g~~P-d~~tyn~lI~~~~~~g~~~--- 157 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATF--TNGARLAVAKDDPEMAFDMVKQMKAF-------GIQP-RLRSYGPALFGFCRKGDAD--- 157 (501)
T ss_dssp HHHHHHHHTTCCCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHT-------TCCC-CHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHhCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCC-ccceehHHHHHHHHCCCHH---
Confidence 455666667766554322 13455666777776655555432110 0000 111 123344444544432
Q ss_pred ccccccHHHHHHHHHcCCCccccccCCCccHHHHHHhcCCHHHHHHHHHhc
Q psy12891 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM 213 (567)
Q Consensus 163 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 213 (567)
.-.++++.+.+.|..++..+- .+.+...+..|+.+-+..+++..
T Consensus 158 ----~A~~l~~~M~~~G~~Pd~~ty---~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 158 ----KAYEVDAHMVESEVVPEEPEL---AALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp ----HHHHHHHHHHHTTCCCCHHHH---HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCCCCHHHH---HHHHHHHhhCCCHHHHHHHHHHH
Confidence 335667777888888776542 45667778889887777777653
No 116
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=50.66 E-value=12 Score=20.47 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=13.0
Q ss_pred HHHHHHhCCHHHHHHHHH
Q psy12891 74 VHAAAKYGNLVTLQLLLE 91 (567)
Q Consensus 74 L~~A~~~g~~~~v~~Ll~ 91 (567)
+..||..|+++.++.|-.
T Consensus 17 iyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 456788888888877743
No 117
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=36.36 E-value=44 Score=32.18 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=16.7
Q ss_pred HHHHHHcCcHH----HHHHHHHcCCCCCCc
Q psy12891 322 LHLAAEAGQLQ----VCKLLLDLGASIDAT 347 (567)
Q Consensus 322 L~~a~~~~~~~----~v~~Ll~~g~~~~~~ 347 (567)
+...++.|+++ +++.+.+.|..++..
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~ 62 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQY 62 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHh
Confidence 55566777754 555666778877644
No 118
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=34.87 E-value=92 Score=28.50 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.4
Q ss_pred CCCCChhHHHHhcCchhHHHHHHHh
Q psy12891 101 KIGETPLHLASRNCKAEVVDLLIQF 125 (567)
Q Consensus 101 ~~g~t~L~~A~~~~~~~iv~~Ll~~ 125 (567)
..|.|.+|.|++..+.+++..|+..
T Consensus 67 ~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 67 DVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp CTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCchhhhhhhhhhhhhHHHHhhhc
Confidence 3588999999999999999999973
No 119
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=32.71 E-value=26 Score=25.64 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCChhHHHHhcCchhHHHHHHHhhhh
Q psy12891 94 GDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128 (567)
Q Consensus 94 a~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~ 128 (567)
..+..+|+.-.-++..|+.+++.++++-|+++...
T Consensus 26 I~L~KkDkLykDAietAa~S~d~elaEeLL~yFVe 60 (125)
T 3qil_A 26 VELAKKDSLYKDAMQYASESKDTELAEELLQWFLQ 60 (125)
T ss_dssp CCCCSCCCCSSHHHHTTTSSCCSHHHHHHHHHHTT
T ss_pred HHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566677777889999999999999999887543
No 120
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=26.06 E-value=46 Score=30.23 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=32.2
Q ss_pred ccccccCCcHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcCCHH
Q psy12891 481 VYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547 (567)
Q Consensus 481 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~~~~ 547 (567)
-..|..|.-.++.+...+..+..+.+++...... ..-..+..|...+..+...+..+
T Consensus 211 L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~----------~~Ls~~k~gs~Vvek~l~~~~~~ 267 (351)
T 3gvo_A 211 LVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKV----------LALSQHKFASNVVEKCVTHASRA 267 (351)
T ss_dssp HHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCH----------HHHHTSTTHHHHHHHHHHHSCHH
T ss_pred cCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHH----------HHHhcCcHHHHHHHHHHHhCCHH
Confidence 3456777777777777777776666666532211 11123445555566666555554
No 121
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=22.46 E-value=2.9e+02 Score=21.90 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=26.7
Q ss_pred ChHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCChhHH------HHhcCchhHHHHHHHh
Q psy12891 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHL------ASRNCKAEVVDLLIQF 125 (567)
Q Consensus 71 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~------A~~~~~~~iv~~Ll~~ 125 (567)
.+-+..|...|+++...-+.+.. .++-+| |...|+.++++.-.++
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKL----------NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH----------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHh----------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 35566777777777666655431 134443 5566777777666654
No 122
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=22.18 E-value=3e+02 Score=21.86 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=78.1
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCccCcCCcHHHHHHHcC
Q psy12891 386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNG 465 (567)
Q Consensus 386 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 465 (567)
.+-+..|+..|+++....+.+.... .... .+.=..|...|+.++++.-..+--|+.. .+.+....|
T Consensus 9 ~~rF~LAL~lg~l~~A~e~a~~l~~---~~~W----k~Lg~~AL~~gn~~lAe~cy~~~~D~~~-------L~~Ly~~tg 74 (177)
T 3mkq_B 9 HIRFDLALEYGNLDAALDEAKKLND---SITW----ERLIQEALAQGNASLAEMIYQTQHSFDK-------LSFLYLVTG 74 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHCC---HHHH----HHHHHHHHHTTCHHHHHHHHHHTTCHHH-------HHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhCC---HHHH----HHHHHHHHHcCChHHHHHHHHHhCCHHH-------HHHHHHHhC
Confidence 3566777888887777666542110 0000 1233456778888888887775544432 445555566
Q ss_pred cHHHHHHHHhcccccccccccCCcHHHHHHHcCCH-HHHHHHHhcCCCCCCCCCCCCcccccccCCCCCCCHHHHHHHcC
Q psy12891 466 HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQA-DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544 (567)
Q Consensus 466 ~~~~v~~Ll~~~~~~~~~~~~g~t~l~~A~~~~~~-~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~g~t~l~~A~~~~ 544 (567)
+.+-++.|.+.-. ...+-..+++.+...|++ ++++.|.+.+.- --+...|.-+|
T Consensus 75 ~~e~L~kla~iA~----~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~---------------------~eA~~~A~t~g 129 (177)
T 3mkq_B 75 DVNKLSKMQNIAQ----TREDFGSMLLNTFYNNSTKERSSIFAEGGSL---------------------PLAYAVAKANG 129 (177)
T ss_dssp CHHHHHHHHHHHH----HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH---------------------HHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH----HCccHHHHHHHHHHcCCHHHHHHHHHHCCCh---------------------HHHHHHHHHcC
Confidence 6665555543211 011122567777777775 455555554210 12567777788
Q ss_pred CHHHHHHHHhccCCccc
Q psy12891 545 NENVVRLLLNSAGVQVD 561 (567)
Q Consensus 545 ~~~~v~~Ll~~~g~~~~ 561 (567)
..++.+-+++..|.+..
T Consensus 130 ~~~~a~~~~~~~~~~~~ 146 (177)
T 3mkq_B 130 DEAAASAFLEQAEVDEQ 146 (177)
T ss_dssp CHHHHHHHHHHTTCCGG
T ss_pred cHHHHHHHHHHhCCccc
Confidence 88888888887776543
No 123
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=21.60 E-value=1.9e+02 Score=26.60 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCCCChHHHHHHHhCCHHHHHHHHHc
Q psy12891 67 TDDGQTPVHAAAKYGNLVTLQLLLED 92 (567)
Q Consensus 67 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ 92 (567)
-.-|.|.+|.|++..+-+++..|+..
T Consensus 66 f~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 66 FDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp CCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCchhhhhhhhhhhhhHHHHhhhc
Confidence 34799999999999999999999974
Done!