RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12891
(567 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 277 bits (712), Expect = 7e-88
Identities = 130/507 (25%), Positives = 195/507 (38%), Gaps = 104/507 (20%)
Query: 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
G + G TP+H A+ G+L ++ LL+ G P N ETPLH+A+R EV
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63
Query: 120 DLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAG 179
L+Q VN+ +D + LH A + VKLLLE
Sbjct: 64 KYLLQ--NKAK-------VNAKAKDDQTPLHCAAR-----------IGHTNMVKLLLENN 103
Query: 180 ADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNR 239
A+ +L T T H A G+ + + +LE+ T G+TPL +A
Sbjct: 104 ANPNLATT-AGHTPLHIAAREGHVETVLALLEK--EASQ----ACMTKKGFTPLHVAAKY 156
Query: 240 GHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIP 299
G + + +L A + + G + LH+A H L +
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK-------------------- 196
Query: 300 NGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAA 359
L+ TPLH+AA+ Q++V + LL G S +A QG P+H+AA
Sbjct: 197 --LLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 253
Query: 360 QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRV 419
Q E+ + L + + K G T
Sbjct: 254 QEGHAEMVALLL-SKQANGNLGNKSGLT-------------------------------- 280
Query: 420 TEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479
PL L A+ GH V VL+K G + G+T +H+A+ G+ ++++ + +A
Sbjct: 281 ----PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA- 335
Query: 480 NVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLH 538
+V +K KLG + LH AA G D V LL + GAS S G TPL
Sbjct: 336 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-----------GASP--NEVSSDGTTPLA 382
Query: 539 LAAYSGNENVVRLLLN--SAGVQVDAQ 563
+A G +V +L V
Sbjct: 383 IAKRLGYISVTDVLKVVTDETSFVLVS 409
Score = 267 bits (684), Expect = 7e-84
Identities = 114/458 (24%), Positives = 200/458 (43%), Gaps = 68/458 (14%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
LL+ GA PN++ +TP+H AA+ G+ + LL++ K K +TPLH A+R
Sbjct: 33 LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH 92
Query: 116 AEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLL 175
+V LL++ N N G + LH A + + +TV L
Sbjct: 93 TNMVKLLLENNANP---------NLATTAGHTPLHIAAR-----------EGHVETVLAL 132
Query: 176 LEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
LE A + TK T H A G V +LE+ N G TPL +
Sbjct: 133 LEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLER--DAHP----NAAGKNGLTPLHV 185
Query: 236 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPH 295
A + ++++V +L G + LH+AA+ ++V+
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR---------------- 229
Query: 296 NIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 355
L+ + + +++ TPLHLAA+ G ++ LLL A+ + + G P+
Sbjct: 230 ------SLL-QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL 282
Query: 356 HVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-IS 414
H+ AQ VA + ++ V ATT+ G T H+A+ G++ +++ L++ ++
Sbjct: 283 HLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQ---HQADVN 338
Query: 415 ARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE--E 472
A+ + +PL AA+ GH ++V +L+K GAS + + G T + +A + G+ V + +
Sbjct: 339 AKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
Query: 473 MRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
+ + + V K ++ TV E+L
Sbjct: 398 VVTDETSFVLVSDKHRMSFPE---------TVDEILDV 426
Score = 225 bits (575), Expect = 8e-68
Identities = 100/392 (25%), Positives = 160/392 (40%), Gaps = 62/392 (15%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
+TPLH AAR +LL++ A PNL IAAR + L LL+ A
Sbjct: 81 QTPLHCAAR-IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE-TVLALLEKEAS 138
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
T G TP+H AAKYG + +LLLE P K G TPLH+A + ++V LL
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
+ + S +S +G + LH A + + + + LL+ G
Sbjct: 199 LP--RGGS-------PHSPAWNGYTPLHIAAK-----------QNQVEVARSLLQYGGSA 238
Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
+ ++ Q T H A G+ +++ +L + N G TPL + GH+
Sbjct: 239 NAESVQG-VTPLHLAAQEGHAEMVALLLSK--QANG----NLGNKSGLTPLHLVAQEGHV 291
Query: 243 ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGF 302
+ + ++ + VD + G + LH+A+ +G +K+ F
Sbjct: 292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK----------------------F 329
Query: 303 LVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN 362
L+ H A ++ T +PLH AA+ G + LLL GAS + G P+ +A +
Sbjct: 330 LL-QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388
Query: 363 FPEVAQIFLR--AHPSLVTATTKDGNTCAHIA 392
+ V + S V + K +
Sbjct: 389 YISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Score = 222 bits (569), Expect = 7e-67
Identities = 100/346 (28%), Positives = 155/346 (44%), Gaps = 45/346 (13%)
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
G TPL +A GH+ +V +L A +V + + + LH+AA G+ +V+
Sbjct: 8 GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK--- 64
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
+L+ + A ++ QTPLH AA G + KLLL+ A
Sbjct: 65 -------------------YLL-QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104
Query: 343 SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
+ + G P+H+AA+ E L S TK G T H+AA G V V E
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEAS-QACMTKKGFTPLHVAAKYGKVRVAE 163
Query: 403 ELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
L++ +A + TPL +A + ++V++L+ G S G+T +H+A
Sbjct: 164 LLLE---RDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219
Query: 462 AQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
A+ +V + + ++ GVT LH+AA G A+ V LLS
Sbjct: 220 AKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSK----------- 267
Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
A+ LG++SG+TPLHL A G+ V +L+ GV VDA T+
Sbjct: 268 QANG--NLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRM 310
Score = 192 bits (490), Expect = 2e-55
Identities = 80/316 (25%), Positives = 133/316 (42%), Gaps = 45/316 (14%)
Query: 253 ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVID 312
+ G + LH+A+ G+L + L+ A +
Sbjct: 5 ISGGGGGESGLTPLHVASFMGHLPIVK----------------------NLL-QRGASPN 41
Query: 313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
+ ++ +TPLH+AA AG +V K LL A ++A Q P+H AA+ + ++ L
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL- 100
Query: 373 AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEG 431
+ + T G+T HIAA +G V + L++ + + TPL +AA+
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLE---KEASQACMTK-KGFTPLHVAAKY 156
Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTA 490
G V +L++ A K G T +H+A + + +++ + + +S G T
Sbjct: 157 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG-SPHSPAWNGYTP 215
Query: 491 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
LH+AA Q + R LL + G S S G+TPLHLAA G+ +V
Sbjct: 216 LHIAAKQNQVEVARSLLQY-----------GGSA--NAESVQGVTPLHLAAQEGHAEMVA 262
Query: 551 LLLNSAGVQVDAQTQE 566
LLL S + +
Sbjct: 263 LLL-SKQANGNLGNKS 277
Score = 179 bits (456), Expect = 1e-50
Identities = 79/262 (30%), Positives = 119/262 (45%), Gaps = 22/262 (8%)
Query: 307 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 366
TPLH+A+ G L + K LL GAS + ++ + + P+H+AA+ EV
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62
Query: 367 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPL 425
A+ L+ V A KD T H AA G +++ L++ + + TPL
Sbjct: 63 AKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLE---NNANPNLATT-AGHTPL 117
Query: 426 QLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK- 484
+AA GH V L++ AS K GFT +H+AA+ G +V E + A + +
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA-HPNAAG 176
Query: 485 KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544
K G+T LHVA + D V+ LL G S + +G TPLH+AA
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPR-----------GGSP--HSPAWNGYTPLHIAAKQN 223
Query: 545 NENVVRLLLNSAGVQVDAQTQE 566
V R LL G +A++ +
Sbjct: 224 QVEVARSLL-QYGGSANAESVQ 244
Score = 150 bits (382), Expect = 3e-40
Identities = 76/291 (26%), Positives = 121/291 (41%), Gaps = 44/291 (15%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
TPLH+A + +LL G P+ IAA+ ++ A LL+ G
Sbjct: 180 LTPLHVAVH-HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGS 237
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N + G TP+H AA+ G+ + LLL + NK G TPLHL ++ V D+L
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297
Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
I+ + ++ G + LH A + K VK LL+ ADV
Sbjct: 298 IKHGVMV---------DATTRMGYTPLHVASH-----------YGNIKLVKFLLQHQADV 337
Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
+ +TK + H A G+ D++T +L+ G N+ +S G TPL IA G++
Sbjct: 338 NAKTK-LGYSPLHQAAQQGHTDIVTLLLKN--GASP----NEVSSDGTTPLAIAKRLGYI 390
Query: 243 ELV---NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
+ + + + V V D+ S E + + ++SF
Sbjct: 391 SVTDVLKVVTDETSFVLVSDKHRMSFPETVDEI----LDVSEDEGEELISF 437
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 216 bits (553), Expect = 2e-65
Identities = 62/445 (13%), Positives = 126/445 (28%), Gaps = 91/445 (20%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
M + D+ +H AA+ G ++ L+E G P +N+ G T LHLA +
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
+ L + S G +H A K + V
Sbjct: 65 CVDTAKYLASVGEVHS-----------LWHGQKPIHLAVMANKTD-----------LVVA 102
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
L+E + + +V EI + + G T L
Sbjct: 103 LVEGAKE-------RGQMPESLLNECDEREV----------NEIG--SHVKHCKGQTALH 143
Query: 235 IACNRG--HMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
G ++E++ ++ A D+ + L A E + +
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREAL--DLM--------- 192
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
+ + +D + + LH A V +++G ++ D++
Sbjct: 193 -----MDTV--PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT 245
Query: 353 KPIHVAAQNNFPEVAQIFL--RAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 410
P++++ + + + L + +G T
Sbjct: 246 VPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP-------------------- 285
Query: 411 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 470
+RV + AA+ V+++L + TG + V
Sbjct: 286 ------DRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339
Query: 471 EEMRSSKA-LNVYSKKLGVTALHVA 494
+ A + S+ + V+
Sbjct: 340 RMKLAPSAPVRTRSRS-RARSSAVS 363
Score = 202 bits (516), Expect = 5e-60
Identities = 59/397 (14%), Positives = 129/397 (32%), Gaps = 69/397 (17%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
+H+AAR T+ L+++G P + G
Sbjct: 21 MEKIHVAARK-----------------GQTDEVR----------RLIETGVSPTIQNRFG 53
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQF----- 125
T +H A K+G + T + L G + G+ P+HLA K ++V L++
Sbjct: 54 CTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERG 111
Query: 126 -------VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
+ +E + + G +ALH+ + L + +K+L++
Sbjct: 112 QMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL---------EMIKILVQL 162
Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDV---LTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
GA + + K ET N + + + S + + G + L
Sbjct: 163 GASPTAKDK-ADETPLMRAMEFRNREALDLMMDTVPSKSSLRL----DYANKQGNSHLHW 217
Query: 236 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPH 295
A ++ + V++ D E L+L+ + + L
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL----------LTKELLQKT 267
Query: 296 NIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 355
++ + + + + + AA+ + +V +LL + + + + G
Sbjct: 268 DVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGA 327
Query: 356 HVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 392
+ P V + A + V ++ + ++
Sbjct: 328 VKRKKKAAPAVKR-MKLAPSAPVRTRSRSRARSSAVS 363
Score = 193 bits (492), Expect = 1e-56
Identities = 62/446 (13%), Positives = 114/446 (25%), Gaps = 124/446 (27%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
+++ +H A + K V+ L+E G ++Q + TA H
Sbjct: 13 RIKSDDENMEKIHVAAR-----------KGQTDEVRRLIETGVSPTIQNR-FGCTALHLA 60
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
G D L S G P+ +A +LV ++
Sbjct: 61 CKFGCVDT-AKYL-------ASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKER-- 110
Query: 258 FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLR 317
G+ L E +V + + +
Sbjct: 111 ----GQMPESLLNECDEREV-----------------------------NEIGSHVKHCK 137
Query: 318 KQTPLHLAAEAGQ--LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
QT LH G L++ K+L+ LGAS A D + P+ A + E + + P
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197
Query: 376 SL----VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG 431
S + K GN+ L A
Sbjct: 198 SKSSLRLDYANKQGNS------------------------------------HLHWAILI 221
Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE------------EMRSSKAL 479
+V V+ G E+ ++L+ + + +
Sbjct: 222 NWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT 281
Query: 480 NVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLH 538
V + + + AA + + ++ L +G
Sbjct: 282 TVLPDRVVWLDFVPAAADPSKQEVLQLLQEK-----------LDEV--VRSLNTGAGGAV 328
Query: 539 LAAYSGNENVVRLLLNSAGVQVDAQT 564
V R+ L + V ++
Sbjct: 329 KRKKKAAPAVKRMKL-APSAPVRTRS 353
Score = 170 bits (433), Expect = 4e-48
Identities = 57/328 (17%), Positives = 103/328 (31%), Gaps = 63/328 (19%)
Query: 249 LNNHARVDV--FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHD 306
+ + +++ D E +H+AA G L+ +
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVR----------------------RLI-E 41
Query: 307 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 366
I T LHLA + G + K L +G GQKPIH+A N ++
Sbjct: 42 TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDL 99
Query: 367 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ 426
LV + G + V E ++ T L
Sbjct: 100 VVA-------LVEGAKERGQMPESLLNECDEREVNEIG--------SHVKHC-KGQTALH 143
Query: 427 LAAEGG--HANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQV----LEEMRSSKALN 480
G + ++++LV+ GAS T ++K T + A + + + ++ + S +L
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR 203
Query: 481 VYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
+ K G + LH A D + G + PL+L
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEM-----------GIDV--NMEDNEHTVPLYL 250
Query: 540 AAYSGNENVVRLLLNSAGVQVDAQTQEN 567
+ + + + LL V + +
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYH 278
Score = 151 bits (385), Expect = 3e-41
Identities = 44/267 (16%), Positives = 86/267 (32%), Gaps = 31/267 (11%)
Query: 301 GFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQ 360
G + +H+AA GQ + L++ G S + G +H+A +
Sbjct: 3 GSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACK 62
Query: 361 NNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVT 420
+ A+ + + G H+A M ++ L +
Sbjct: 63 FGCVDTAKYLAS-VGEVHSL--WHGQKPIHLAVMANKTDLVVAL--------VEGAKER- 110
Query: 421 EATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN--QVLEEMRSSKA 478
P L E V + ++ G TA+H G ++++ + A
Sbjct: 111 GQMPESLLNECDEREVNEIGSHV------KHCKGQTALHWCVGLGPEYLEMIKILVQLGA 164
Query: 479 LNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
+ +K K T L A F + + ++ VP + ++ G + L
Sbjct: 165 -SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL--------DYANKQGNSHL 215
Query: 538 HLAAYSGNENVVRLLLNSAGVQVDAQT 564
H A E+V + G+ V+ +
Sbjct: 216 HWAILINWEDVAMRFV-EMGIDVNMED 241
Score = 55.3 bits (134), Expect = 2e-08
Identities = 6/103 (5%), Positives = 19/103 (18%), Gaps = 27/103 (26%)
Query: 8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
+ + AA +L + +
Sbjct: 288 VVWLDFVPAAAD---------------------------PSKQEVLQLLQEKLDEVVRSL 320
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
+ G K ++ L +++ ++
Sbjct: 321 NTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 197 bits (504), Expect = 2e-58
Identities = 94/504 (18%), Positives = 158/504 (31%), Gaps = 159/504 (31%)
Query: 47 KDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNL-VTLQLLLEDGGDPMYKNKIGET 105
+ G + AL L A LT + + + AA+ GN + LL + + T
Sbjct: 2 EFG-KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
Query: 106 PLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITS 165
PLHLA+ + +V LL+Q ++ ++ ++ G LH AC
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADV---------HAKDKGGLVPLHNACS----------- 100
Query: 166 KEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQ 225
+ +LLL+ GA V N
Sbjct: 101 YGHYEVTELLLKHGACV----------------------------------------NAM 120
Query: 226 TSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKH 285
+TPL A ++ +E+ + +L++ A + + G+SA+ +A
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE------------ 168
Query: 286 SVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 345
+ + + L A E L K L L
Sbjct: 169 ---------------------LRERLTYE-FKGHSLLQAARE-ADLAKVKKTLALEIINF 205
Query: 346 ATDDQGQKPIHVAAQN---NFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
+ +H A + +VA++ LR + V KD T
Sbjct: 206 KQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKDFMT--------------- 249
Query: 403 ELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
PL +AAE H +V+ VL K GA + G TA+H AA
Sbjct: 250 ---------------------PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
Query: 463 QNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTG 521
GH Q + S + + G TA + + V+++LS
Sbjct: 289 LAGHLQTCRLLLSYGS-DPSIISLQGFTAAQMG-----NEAVQQILSE-----------S 331
Query: 522 ASFLGELGSESGMTPLHLAAYSGN 545
+ + L A+ +G+
Sbjct: 332 T----PMRTSDVDYRLLEASKAGD 351
Score = 196 bits (500), Expect = 6e-58
Identities = 90/420 (21%), Positives = 144/420 (34%), Gaps = 79/420 (18%)
Query: 21 KDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAGPNLTTDDGQT 72
+ G + AL L A LT AAR + ++ +L + + T
Sbjct: 2 EFG-KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60
Query: 73 PVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQE 132
P+H AA Y + +QLLL+ G D K+K G PLH A EV +LL++
Sbjct: 61 PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK--HGAC-- 116
Query: 133 KVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHET 192
VN+++ + LH A K + LLL GAD +L + ++
Sbjct: 117 -----VNAMDLWQFTPLHEAAS-----------KNRVEVCSLLLSHGADPTLVNC-HGKS 159
Query: 193 AFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNH 252
A E K G + L A + V L
Sbjct: 160 AVDMAPTPEL-------------RERLTYEFK----GHSLLQAARE-ADLAKVKKTLALE 201
Query: 253 ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVID 312
Q +ALH A + K + V L+ A ++
Sbjct: 202 IINFKQPQSHETALHCAVASLHPK-------RKQVAEL------------LL-RKGANVN 241
Query: 313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
TPLH+AAE V ++L GA ++A D GQ +H AA + ++ L
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL- 300
Query: 373 AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGG 432
++ S + + G T A + +++++ L A++ G
Sbjct: 301 SYGSDPSIISLQGFTAAQMGNE-----AVQQILS---ESTPM--RTSDVDYRLLEASKAG 350
Score = 186 bits (474), Expect = 5e-54
Identities = 85/403 (21%), Positives = 132/403 (32%), Gaps = 95/403 (23%)
Query: 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
E K+ L + A L + + A +GN + L +L +
Sbjct: 2 EFGKSALDLADPSAKAVLTGE-YKKDELLEAARSGNEEKLMALLTP-LNVNC----HASD 55
Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHS 286
TPL +A + +V +L + A V D+ G LH A +G+ +V+
Sbjct: 56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE------- 108
Query: 287 VMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 346
L+ H A ++ + L + TPLH AA +++VC LLL GA
Sbjct: 109 ---------------LLL-KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152
Query: 347 TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406
+ G+ + +A E + H
Sbjct: 153 VNCHGKSAVDMAPTPELRERLTYEFKGH-------------------------------- 180
Query: 407 FDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGH 466
+ LQ A E V+ + + ++ TA+H A + H
Sbjct: 181 ----------------SLLQAAREA-DLAKVKKTLALEIINFKQPQSHETALHCAVASLH 223
Query: 467 NQVLEEMRS--SKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGAS 523
+ + K NV K K +T LHVAA D + L H GA
Sbjct: 224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH-----------GAK 272
Query: 524 FLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
G T LH AA +G+ RLLL S G + +
Sbjct: 273 M--NALDSLGQTALHRAALAGHLQTCRLLL-SYGSDPSIISLQ 312
Score = 99.9 bits (250), Expect = 4e-23
Identities = 33/200 (16%), Positives = 61/200 (30%), Gaps = 38/200 (19%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTN-------IAARVKDGDR--CALMLLKSGAG 62
+ L A D + L A R A +LL+ GA
Sbjct: 181 SLLQAARE-ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN 239
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N D TP+H AA+ + +++L + G + +G+T LH A+ + LL
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299
Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
+ + ++ G +A + V+ +L +
Sbjct: 300 LS--YGSD-------PSIISLQGFTAAQMGNEA----------------VQQILSESTPM 334
Query: 183 SLQTKQNHETAFHYCAVAGN 202
+ + AG+
Sbjct: 335 RTSDV---DYRLLEASKAGD 351
Score = 71.4 bits (176), Expect = 1e-13
Identities = 34/144 (23%), Positives = 47/144 (32%), Gaps = 43/144 (29%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
TPLH+AA D + L K GA N G
Sbjct: 248 MTPLHVAAERAHNDVMEV---------------------------LHKHGAKMNALDSLG 280
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
QT +H AA G+L T +LLL G DP + G T + E V ++ +
Sbjct: 281 QTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NEAVQQILSESTPM- 334
Query: 131 QEKVLEYVNSVNEDGASALHYACQ 154
+ + D L A +
Sbjct: 335 --------RTSDVDY--RLLEASK 348
Score = 43.3 bits (103), Expect = 2e-04
Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 34/103 (33%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
+T LH AA +LL G+ P++ + G
Sbjct: 281 QTALHRAALAGHLQ---------------------------TCRLLLSYGSDPSIISLQG 313
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
T + +Q +L + + + L AS+
Sbjct: 314 FTAAQMGNE-----AVQQILSESTPMRTSDV--DYRLLEASKA 349
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 181 bits (462), Expect = 4e-53
Identities = 66/350 (18%), Positives = 111/350 (31%), Gaps = 76/350 (21%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMY---KNKIGETPLHLASRNCKAEVVD 120
T+DG T +H A + + L LL Y +N +G+T LHLA+ +A V+
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62
Query: 121 LLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGA 180
L V G +ALH AC+V +LL+
Sbjct: 63 KLYA--AGAG-------VLVAERGGHTALHLACRVRAHT-----------CACVLLQPRP 102
Query: 181 DVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRG 240
+ ++++ + P +
Sbjct: 103 SHPRDASDTY---------------------------LTQSQDCTPDTSHAPAAVDSQPN 135
Query: 241 HMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIP 299
+ +++ + +G + LH+A H ++
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR-------------------- 175
Query: 300 NGFLVHDHAAVIDILTLRK-QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
L D A ++ +TPLHLA EA V +LLL GA A G+ P+ A
Sbjct: 176 --LLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232
Query: 359 AQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
P +A+ LRAH + D + + +E ++D
Sbjct: 233 LLRPNPILAR-LLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 161 bits (410), Expect = 1e-45
Identities = 62/342 (18%), Positives = 104/342 (30%), Gaps = 74/342 (21%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
V EDG +ALH A + + + LL A
Sbjct: 2 FGYVTEDGDTALHLAVI-----------HQHEPFLDFLLGFSAGHE-------------- 36
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
L+ Q +G T L +A G V + A V V
Sbjct: 37 -----------------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73
Query: 258 FDQEGRSALHLAAEHGYLKV-----SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVID 312
++ G +ALHLA S H + + D
Sbjct: 74 AERGGHTALHLACRVRAHTCACVLLQPRPS------------HPRDASDTYLTQSQ---D 118
Query: 313 ILTLRKQTPLHLAAEA-GQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
P + ++ + + D ++A + G P+HVA + E+ ++
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178
Query: 372 RAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAE 430
A L G T H+A + V+E L+K +G +AR TPL A
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK---AGADPTARMY-GGRTPLGSALL 234
Query: 431 GGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 472
+ + R+L GA ++ + + + + +E
Sbjct: 235 RPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDE 276
Score = 160 bits (406), Expect = 4e-45
Identities = 63/305 (20%), Positives = 99/305 (32%), Gaps = 43/305 (14%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLN---NHARVDVFDQEGRSALHLAAEHGYLKVS 278
T G T L +A H ++ +L H +D+ + G++ALHLAA G
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
L A + + T LHLA +LL
Sbjct: 62 E----------------------KLY-AAGAGVLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 339 DLGASI-------------DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDG 385
S D T D P V +Q N + + A DG
Sbjct: 99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158
Query: 386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
+T H+A + ++ L D ++ TPL LA E A+V+ +L+KAGA
Sbjct: 159 HTPLHVAVIHKDAEMVRLLR--DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 446 SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVR 504
T G T + A + + +R+ A ++ + +D
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGA-PEPEDGGDKLSPCSSSGSDSDSDNRD 275
Query: 505 ELLSH 509
E +
Sbjct: 276 EGDEY 280
Score = 158 bits (403), Expect = 9e-45
Identities = 57/363 (15%), Positives = 97/363 (26%), Gaps = 102/363 (28%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
+T LH+A + LL AG ++ D G
Sbjct: 10 DTALHLAVIHQHEP-FLDFLLGFSAGHEYLDLQ-----------------------NDLG 45
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
QT +H AA G T++ L G + + G T LHLA R +L+Q +
Sbjct: 46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105
Query: 131 QEKVLEYV----NSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQT 186
++ Y+ + + + Q + + + +
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQ----------PNPENEEEPRDEDWRLQL---- 151
Query: 187 KQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVN 246
+ G TPL +A E+V
Sbjct: 152 ------------------------------------EAENYDGHTPLHVAVIHKDAEMVR 175
Query: 247 TMLNNHARVDVFDQE-GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVH 305
+ + A ++ + GR+ LHLA E V L+
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLE----------------------LLL- 212
Query: 306 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPE 365
A +TPL A + +LL GA P + ++ +
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSD 272
Query: 366 VAQ 368
Sbjct: 273 NRD 275
Score = 156 bits (397), Expect = 7e-44
Identities = 62/313 (19%), Positives = 94/313 (30%), Gaps = 66/313 (21%)
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAA---VIDILT 315
++G +ALHLA H + FL+ +A +D+
Sbjct: 6 TEDGDTALHLAVIHQHEPFLD----------------------FLL-GFSAGHEYLDLQN 42
Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
QT LHLAA G+ + L GA + + G +H+A + A + L+ P
Sbjct: 43 DLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP 102
Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAA-EGGHA 434
S D T P + +
Sbjct: 103 S-HPRDASDTYLTQSQDC-----------------------TPDTSHAPAAVDSQPNPEN 138
Query: 435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHV 493
EN G T +H+A + +++ +R + A LN G T LH+
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHL 198
Query: 494 AAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
A A + LL GA G TPL A N + RLL
Sbjct: 199 AVEAQAASVLELLLKA-----------GADP--TARMYGGRTPLGSALLRPNPILARLLR 245
Query: 554 NSAGVQVDAQTQE 566
+ G +
Sbjct: 246 -AHGAPEPEDGGD 257
Score = 134 bits (340), Expect = 8e-36
Identities = 49/284 (17%), Positives = 81/284 (28%), Gaps = 67/284 (23%)
Query: 8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
L +T LH+AA + + L +GAG +
Sbjct: 43 DLGQTALHLAAILGEAS---------------------------TVEKLYAAGAGVLVAE 75
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN-------------KIGETPLHL-ASRN 113
G T +H A + +LL+ P + + N
Sbjct: 76 RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135
Query: 114 CKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVK 173
+ E + + + N DG + LH A +D + V+
Sbjct: 136 PENEEEPRDEDWRLQL---------EAENYDGHTPLHVAVI-----------HKDAEMVR 175
Query: 174 LLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPL 233
LL +AGAD++ T H A VL +L+ G + + G TPL
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA--GADP----TARMYGGRTPL 229
Query: 234 LIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
A R + L + + A + S +
Sbjct: 230 GSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDN 273
Score = 133 bits (337), Expect = 2e-35
Identities = 53/240 (22%), Positives = 78/240 (32%), Gaps = 34/240 (14%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
+ G +H+A + L A + G T H+AA+ G +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 402 EELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN--------- 451
E+L +G + R T L LA VL++ S +
Sbjct: 62 EKLYA---AGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117
Query: 452 ----KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVREL 506
T + +Q E L + ++ G T LHVA A+ VR L
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177
Query: 507 LSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
GA L + G TPLHLA + +V+ LLL AG A+
Sbjct: 178 RDA-----------GAD-LNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYG 224
Score = 84.9 bits (211), Expect = 2e-18
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 19/128 (14%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
TPLH+A +L +GA ++ R L LL
Sbjct: 159 HTPLHVAVI-HKDAEMVRLLRDAGA-----DLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
K+GA P G+TP+ +A N + +LL G +P + + ++
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSD 272
Query: 118 VVDLLIQF 125
D ++
Sbjct: 273 NRDEGDEY 280
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 179 bits (457), Expect = 2e-52
Identities = 56/334 (16%), Positives = 106/334 (31%), Gaps = 58/334 (17%)
Query: 235 IACNRGHMELVNTMLNNHARVDVFDQE-----GRSALHLAAEHGYLKVSSGKSLKHSVMS 289
+ + H + ++ + + D + G G +S
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLS----------- 49
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
+ + D + +P+H AA G + L+ G +++
Sbjct: 50 -----------------NPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90
Query: 350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 409
P+H A +I L H + V T D +T A + GS + L++
Sbjct: 91 DHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ--- 146
Query: 410 SGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
G + + A+P+ AA GH V L+ G + + T ++LA +N
Sbjct: 147 HGASVQPESD--LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 204
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGEL 528
++++ S A +V K + LH + L+ GA +
Sbjct: 205 CVKKLLESGA-DVNQGKGQDSPLHAVVRTASEELACLLMDF-----------GADT--QA 250
Query: 529 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
+ G P+ L +L L G +
Sbjct: 251 KNAEGKRPVELVPPESPL--AQLFLEREGASLPK 282
Score = 154 bits (391), Expect = 6e-43
Identities = 63/325 (19%), Positives = 106/325 (32%), Gaps = 62/325 (19%)
Query: 30 LLKSGAGPNLTNIAARVKDG-------DRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGN 82
L+ G+ + DG D + LL + +P+H AA +G+
Sbjct: 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPL--MGDAVSDWSPMHEAAIHGH 71
Query: 83 LVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVN 142
++L+ L+ G +PLH A V +L++ + N V
Sbjct: 72 QLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---------NGVT 122
Query: 143 EDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGN 202
D + L AC + V LLL+ GA V Q + + + H A G+
Sbjct: 123 ADWHTPLFNACVSGSWD-----------CVNLLLQHGASV--QPESDLASPIHEAARRGH 169
Query: 203 NDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEG 262
+ + ++ G I + + S TPL +AC V +L + A V+ +
Sbjct: 170 VECVNSLIAY--GGNI----DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQ 222
Query: 263 RSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPL 322
S LH +++ L+ D A + P+
Sbjct: 223 DSPLHAVVRTASEELAC----------------------LLM-DFGADTQAKNAEGKRPV 259
Query: 323 HLAAEAGQLQVCKLLLDLGASIDAT 347
L L L GAS+
Sbjct: 260 ELVPPESPL-AQLFLEREGASLPKP 283
Score = 151 bits (385), Expect = 4e-42
Identities = 68/351 (19%), Positives = 109/351 (31%), Gaps = 98/351 (27%)
Query: 56 LLKSGAGPN-----LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
L+ G+ DG P G + L+ D +P+H A
Sbjct: 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS-------DWSPMHEA 66
Query: 111 SRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQK 170
+ + + LI Q + VN + D S LH AC
Sbjct: 67 AIHGHQLSLRNLIS--QGWA-------VNIITADHVSPLHEACLGGHLS----------- 106
Query: 171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW 230
VK+LL+ GA V N T+
Sbjct: 107 CVKILLKHGAQV----------------------------------------NGVTADWH 126
Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSF 290
TPL AC G + VN +L + A V + + S +H AA G+++ +
Sbjct: 127 TPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVN----------- 174
Query: 291 RLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQ 350
L+ + ID TPL+LA E Q K LL+ GA ++
Sbjct: 175 -----------SLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKG- 221
Query: 351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
P+H + E+A + + + A +G + + + +
Sbjct: 222 QDSPLHAVVRTASEELACLLM-DFGADTQAKNAEGKRPVELVPPESPLAQL 271
Score = 151 bits (383), Expect = 9e-42
Identities = 52/364 (14%), Positives = 95/364 (26%), Gaps = 103/364 (28%)
Query: 109 LASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKED 168
+ S + L+ +++ DG+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMD----GKQGGMDGSKPAGPRDF-------------- 42
Query: 169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSI 228
+ L + +
Sbjct: 43 ---PGIRLLSNP-----------------LMGDAVS------------------------ 58
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
W+P+ A GH + +++ V++ + S LH A G+L
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK--------- 109
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ H A ++ +T TPL A +G LLL GAS+
Sbjct: 110 -------------ILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF- 407
D PIH AA+ E + A+ + T ++A +++L++
Sbjct: 156 D-LASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 408 -----DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
+ +PL + +L+ GA +N G V L
Sbjct: 214 ADVNQGKGQ----------DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP 263
Query: 463 QNGH 466
Sbjct: 264 PESP 267
Score = 145 bits (368), Expect = 9e-40
Identities = 48/272 (17%), Positives = 90/272 (33%), Gaps = 42/272 (15%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTN------IAARVKDGDRCALMLLKSGAGPNL 65
P + LL + + + AA L+ G N+
Sbjct: 35 KPAGPRDFPG------IRLLSNPLMGDAVSDWSPMHEAAIHGHQL-SLRNLISQGWAVNI 87
Query: 66 TTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQF 125
T D +P+H A G+L +++LL+ G TPL A + + V+LL+Q
Sbjct: 88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147
Query: 126 VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
++ E D AS +H A + + + V L+ G ++ +
Sbjct: 148 GASVQPES----------DLASPIHEAAR-----------RGHVECVNSLIAYGGNIDHK 186
Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
+ T + + +LE G ++++ +PL EL
Sbjct: 187 IS-HLGTPLYLACENQQRACVKKLLES--GADVNQGKG-----QDSPLHAVVRTASEELA 238
Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+++ A + EG+ + L L
Sbjct: 239 CLLMDFGADTQAKNAEGKRPVELVPPESPLAQ 270
Score = 124 bits (315), Expect = 2e-32
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 39/243 (16%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
+P+H AA L+ G N+ A C +LLK GA
Sbjct: 60 WSPMHEAAIHGHQL-SLRNLISQGWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQ 117
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N T D TP+ A G+ + LLL+ G ++ +P+H A+R E V+ L
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSL 176
Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
I + NI + + L+ AC+ + VK LLE+GADV
Sbjct: 177 IAYGGNI---------DHKISHLGTPLYLACENQQRA-----------CVKKLLESGADV 216
Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
+ ++ H + ++ +++ G + + + G P+ + +
Sbjct: 217 --NQGKGQDSPLHAVVRTASEELACLLMDF--GADT----QAKNAEGKRPVELVPPESPL 268
Query: 243 ELV 245
+
Sbjct: 269 AQL 271
Score = 105 bits (264), Expect = 2e-25
Identities = 38/179 (21%), Positives = 59/179 (32%), Gaps = 31/179 (17%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN-------IAARVKDGDRCALMLLKSGAGP 63
TPL A C +LL+ GA + AAR + C L+ G
Sbjct: 126 HTPLFNACV-SGSWDCVNLLLQHGASVQPESDLASPIHEAAR-RGHVECVNSLIAYGGNI 183
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
+ TP++ A + ++ LLE G D + K ++PLH R E+ LL+
Sbjct: 184 DHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLM 242
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
F + + N +G + E L GA +
Sbjct: 243 DFGADT---------QAKNAEGKRPVELVPP------------ESPLAQLFLEREGASL 280
Score = 90.2 bits (225), Expect = 3e-20
Identities = 40/241 (16%), Positives = 62/241 (25%), Gaps = 86/241 (35%)
Query: 324 LAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTK 383
+ + L+ G+ + + D +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQ-----------------------------GGM 31
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
DG+ A G + LM S +P+ AA GH +R L+
Sbjct: 32 DGSKPAGPRDFPGIRLLSNPLMGDAVSD----------WSPMHEAAIHGHQLSLRNLISQ 81
Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTV 503
G + + +H A GH V
Sbjct: 82 GWAVNIITADHVSPLHEACLGGH---------------------------------LSCV 108
Query: 504 RELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
+ LL H GA + TPL A SG+ + V LLL G V +
Sbjct: 109 KILLKH-----------GAQV--NGVTADWHTPLFNACVSGSWDCVNLLL-QHGASVQPE 154
Query: 564 T 564
+
Sbjct: 155 S 155
Score = 83.7 bits (208), Expect = 5e-18
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALML 56
+P+H AAR + C L+ G + +A C L
Sbjct: 152 QPESDLASPIHEAAR-RGHVECVNSLIAYGGNIDHKISHLGTPLYLACE-NQQRACVKKL 209
Query: 57 LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
L+SGA N +P+HA + + LL++ G D KN G+ P+ L
Sbjct: 210 LESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL 268
Query: 117 EVVDLLIQ 124
+ L +
Sbjct: 269 AQL-FLER 275
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 179 bits (457), Expect = 2e-51
Identities = 68/436 (15%), Positives = 134/436 (30%), Gaps = 105/436 (24%)
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
+ + + Q + A+ G + + L+ P N
Sbjct: 25 EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYS---------LYPNPQGYGNGNDF 75
Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
+ D +Q + LH + + +
Sbjct: 76 LGDFNHTNLQIP---------TEPEPESPIKLHTE------------AAGSYAITEPITR 114
Query: 178 AGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKA--LNKQTSIGWTPLLI 235
++ +++ T H+ A + + ++ + I+ +N TPL++
Sbjct: 115 ESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172
Query: 236 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPH 295
A LV ++ A ++++ RSALH AA + +
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV---------------- 216
Query: 296 NIIPNGFLVHDHA--AVIDILTLRKQTPLHLAAEAG---QLQVCKLLLDLGASI------ 344
++++ I+ L T L + A Q+ KLL++ GA +
Sbjct: 217 ------YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270
Query: 345 --DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
D+ +G+ +H AAQ + + + + S +DG T
Sbjct: 271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT--------------- 315
Query: 403 ELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
P+ LAA+ G VV L++ GAS + T TA LA
Sbjct: 316 ---------------------PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 354
Query: 463 QNGHNQVLEEMRSSKA 478
N H+ +++ +
Sbjct: 355 ANNHHNIVDIFDRCRP 370
Score = 171 bits (435), Expect = 2e-48
Identities = 68/382 (17%), Positives = 120/382 (31%), Gaps = 62/382 (16%)
Query: 201 GNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQ 260
+LE I + N+ P G+ L + N +
Sbjct: 33 SITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEP 92
Query: 261 EGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQT 320
E LH A G ++ + + +ID +T
Sbjct: 93 ESPIKLHTEA-AGSYAITE----------------------PITRESVNIID--PRHNRT 127
Query: 321 PLHLAAEAGQLQVCKLLL--------DLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
LH A + + L+ GA ++A D P+ +A + +
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLM- 186
Query: 373 AHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEG 431
+ T K + H AA G++ ++ + I +R T L + A
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHN 245
Query: 432 GHANVVRV---LVKAGA--------SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALN 480
+ V LV+ GA E G TA+H AAQ + +++ + K N
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 305
Query: 481 VYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
+ + G T + +AA G+ + V L+ GAS E + T L
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-----------GASV--EAVDATDHTARQL 352
Query: 540 AAYSGNENVVRLLLNSAGVQVD 561
A + + N+V + + +
Sbjct: 353 AQANNHHNIVDIFD-RCRPERE 373
Score = 171 bits (435), Expect = 3e-48
Identities = 70/373 (18%), Positives = 126/373 (33%), Gaps = 56/373 (15%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
+ L A+ DG + + P +
Sbjct: 38 QHSLLEAS--YDGYIKRQRNELQHYSLYPNPQGYGNGNDF-LGDFNHTNLQIPTEPEPES 94
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
+H A G+ + + + + + + T LH + N AE + LI
Sbjct: 95 PIKLHTEAA-GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152
Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
+ VN+++ D + L A + V L++AGAD ++ K +
Sbjct: 153 IAAGAD-VNAMDCDENTPLMLAVLARRRR-----------LVAYLMKAGADPTIYNK-SE 199
Query: 191 ETAFHYCAVAGNNDVLTGMLEQMS-GTEISKALNKQTSIGWTPLLIACNRGHMELVNTM- 248
+A H A + ++ ML +I + G T L+I + + V +
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDI----EELDRNGMTALMIVAHNEGRDQVASAK 255
Query: 249 ----------LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
+ AR D +GR+ALH AA+ + +
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK------------------- 296
Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
+LV + + D +TP+ LAA+ G+++V L+ GAS++A D +A
Sbjct: 297 ---YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 353
Query: 359 AQNNFPEVAQIFL 371
NN + IF
Sbjct: 354 QANNHHNIVDIFD 366
Score = 160 bits (408), Expect = 2e-44
Identities = 64/373 (17%), Positives = 116/373 (31%), Gaps = 73/373 (19%)
Query: 213 MSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 272
M E ++ ++ + LL A G+++ + +
Sbjct: 21 MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQ---------RNELQHYSLYPNPQGYGN 71
Query: 273 GYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 332
G + H + + LH A G
Sbjct: 72 GNDFLGD-----------------------FNHTNLQIPTEPEPESPIKLHTEAA-GSYA 107
Query: 333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL-------VTATTKDG 385
+ + + +I + +H A N+ E ++ + V A D
Sbjct: 108 ITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 166
Query: 386 NTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLV--- 441
NT +A + ++ LMK +G + N+ +E + L AA ++ ++
Sbjct: 167 NTPLMLAVLARRRRLVAYLMK---AGADPTIYNK-SERSALHQAAANRDFGMMVYMLNST 222
Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR----------SSKALNVYSK-KLGVTA 490
K + ++ G TA+ + A N + + A S+ G TA
Sbjct: 223 KLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA 282
Query: 491 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
LH AA V+ L+ G++ + E G TP+ LAA G VV
Sbjct: 283 LHYAAQVSNMPIVKYLVGEK----------GSNK--DKQDEDGKTPIMLAAQEGRIEVVM 330
Query: 551 LLLNSAGVQVDAQ 563
L+ G V+A
Sbjct: 331 YLI-QQGASVEAV 342
Score = 152 bits (385), Expect = 3e-41
Identities = 52/350 (14%), Positives = 101/350 (28%), Gaps = 86/350 (24%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN-------IAARVKDGD-------RCALML 56
LH A + + A + A
Sbjct: 95 PIKLHTEA--AGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152
Query: 57 LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
+ +GA N D TP+ A + L++ G DP NK + LH A+ N
Sbjct: 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF 212
Query: 117 EVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
++ + ++ K+ + ++ +G +AL ++ + KLL+
Sbjct: 213 GMMVYM------LNSTKLKGDIEELDRNGMTALMIVAH--------NEGRDQVASAKLLV 258
Query: 177 EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIA 236
E GA V + + G T L A
Sbjct: 259 EKGAKVDYDGAARKD--------SEKYK------------------------GRTALHYA 286
Query: 237 CNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPH 295
+M +V ++ + D D++G++ + LAA+ G ++V
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM---------------- 330
Query: 296 NIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 345
+L+ A ++ + T LA + + +
Sbjct: 331 ------YLI-QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 117 bits (295), Expect = 6e-29
Identities = 54/279 (19%), Positives = 97/279 (34%), Gaps = 52/279 (18%)
Query: 5 NSGKLRETPLHIAARVKDGD-------RCALMLLKSGAGPNLTNIAARVKDGDRCALM-- 55
+ T LH A + A + +GA ++ A D LM
Sbjct: 120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGA-----DVNAMDCDE-NTPLMLA 173
Query: 56 -----------LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLE---DGGDPMYKNK 101
L+K+GA P + ++ +H AA + + +L GD ++
Sbjct: 174 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233
Query: 102 IGETPLHLASRNCKAEVVD---LLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
G T L + + N + V LL++ + +S G +ALHYA QV+
Sbjct: 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNM 292
Query: 159 ELIPITSKEDQKTVKLLL-EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTE 217
VK L+ E G++ Q + + +T A G +V+ +++Q G
Sbjct: 293 P-----------IVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQ--GAS 338
Query: 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
+ + T +A H +V+ +
Sbjct: 339 V----EAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 173 bits (441), Expect = 2e-50
Identities = 52/283 (18%), Positives = 93/283 (32%), Gaps = 35/283 (12%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
W+P+ A GH + +++ V++ + S LH A G+L
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK--------- 53
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ H A ++ +T TPL A +G LLL GAS+
Sbjct: 54 -------------ILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 99
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
D PIH AA+ E + A+ + T ++A +++L++
Sbjct: 100 D-LASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-- 155
Query: 409 RSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 467
SG ++ + +PL A + +L+ GA +N G V L
Sbjct: 156 -SGADVNQGK--GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESP- 211
Query: 468 QVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
L ++ + + + +L
Sbjct: 212 --LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252
Score = 167 bits (427), Expect = 2e-48
Identities = 55/303 (18%), Positives = 100/303 (33%), Gaps = 54/303 (17%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
+P+H AA +G+ ++L+ L+ G +PLH A V +L++
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
+ N V D + L AC + V LLL+ GA V Q +
Sbjct: 62 V---------NGVTADWHTPLFNACVSGSWD-----------CVNLLLQHGASV--QPES 99
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
+ + H A G+ + + ++ G I + + S TPL +AC V +
Sbjct: 100 DLASPIHEAARRGHVECVNSLIAY--GGNI----DHKISHLGTPLYLACENQQRACVKKL 153
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
L + A V+ + S LH A +++ L+ D
Sbjct: 154 LESGADVNQ-GKGQDSPLHAVARTASEELAC----------------------LLM-DFG 189
Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 368
A + P+ L + +L L+ + ++ +
Sbjct: 190 ADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITK 247
Query: 369 IFL 371
+ L
Sbjct: 248 LVL 250
Score = 166 bits (424), Expect = 6e-48
Identities = 54/293 (18%), Positives = 96/293 (32%), Gaps = 46/293 (15%)
Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
S +H AA HG+ L+ ++I+T +P
Sbjct: 3 DWSPMHEAAIHGHQLSLR----------------------NLI-SQGWAVNIITADHVSP 39
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
LH A G L K+LL GA ++ P+ A + + + L H + V
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL-QHGASVQP- 97
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 441
D + H AA +G V + L+ G I + TPL LA E V+ L+
Sbjct: 98 ESDLASPIHEAARRGHVECVNSLI--AYGGNIDHKIS-HLGTPLYLACENQQRACVKKLL 154
Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQA 500
++GA ++ K + +H A+ ++ + A + +K G + +
Sbjct: 155 ESGAD-VNQGKGQDSPLHAVARTASEELACLLMDFGA-DTQAKNAEGKRPVELVPPES-- 210
Query: 501 DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
+ L L + + + +L+L
Sbjct: 211 PLAQLFLER-----------EGPP--SLMQLCRLRIRKCFGIQQHHKITKLVL 250
Score = 164 bits (418), Expect = 5e-47
Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 22/246 (8%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
+P+H AA G + L+ G +++ P+H A +I L+ H + V
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVN 63
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
T D +T A + GS + L++ S + + A+P+ AA GH V
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGAS--VQPESD--LASPIHEAARRGHVECVNS 119
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ 499
L+ G + + T ++LA +N ++++ S A +V K + LH A
Sbjct: 120 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGA-DVNQGKGQDSPLHAVARTAS 178
Query: 500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 559
+ L+ GA + + G P+ L + +L L
Sbjct: 179 EELACLLMDF-----------GADT--QAKNAEGKRPVELVPPES--PLAQLFL-EREGP 222
Query: 560 VDAQTQ 565
Sbjct: 223 PSLMQL 228
Score = 146 bits (372), Expect = 1e-40
Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 41/275 (14%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
+P+H AA L+ G N+ A C +LLK GA
Sbjct: 4 WSPMHEAAIHGHQL-SLRNLISQGWAVNIITADHVSPLHEACL-GGHLSCVKILLKHGAQ 61
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N T D TP+ A G+ + LLL+ G ++ +P+H A+R E V+ L
Sbjct: 62 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSL 120
Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
I + NI + + L+ AC+ + + VK LLE+GADV
Sbjct: 121 IAYGGNI---------DHKISHLGTPLYLACE-----------NQQRACVKKLLESGADV 160
Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
+ ++ H A + ++ +++ G + + + G P+ +
Sbjct: 161 --NQGKGQDSPLHAVARTASEELACLLMDF--GADT----QAKNAEGKRPVELVPPESP- 211
Query: 243 ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
L L + + K+
Sbjct: 212 -LAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKI 245
Score = 104 bits (263), Expect = 2e-25
Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 51/201 (25%)
Query: 5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
+P+H AAR + C L+ G +
Sbjct: 96 QPESDLASPIHEAAR---------------------------RGHVECVNSLIAYGGNID 128
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
TP++ A + ++ LLE G D + K ++PLH +R E+ LL+
Sbjct: 129 HKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLLMD 187
Query: 125 FVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSL 184
F + + N +G + + +L LE SL
Sbjct: 188 FGADT---------QAKNAEGKRPVELVPP-------------ESPLAQLFLEREGPPSL 225
Query: 185 QTKQNHETAFHYCAVAGNNDV 205
+ ++ +
Sbjct: 226 MQL-CRLRIRKCFGIQQHHKI 245
Score = 101 bits (254), Expect = 3e-24
Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 17/149 (11%)
Query: 419 VTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
+++ +P+ AA GH +R L+ G + + +H A GH ++ + A
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 479 LNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
V T L A G D V LL H GAS E +P+
Sbjct: 61 -QVNGVTADWHTPLFNACVSGSWDCVNLLLQH-----------GASVQPE---SDLASPI 105
Query: 538 HLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
H AA G+ V L+ + G +D +
Sbjct: 106 HEAARRGHVECVNSLI-AYGGNIDHKISH 133
Score = 60.9 bits (149), Expect = 1e-10
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALML 56
N GK +++PLH AR + A +L+ GA N + A +
Sbjct: 161 NQGKGQDSPLHAVARTASEE-LACLLMDFGADTQAKNAEGKRPVELVPPESP---LAQLF 216
Query: 57 LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
L+ P+L + +L+L +
Sbjct: 217 LEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPED 253
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 168 bits (429), Expect = 3e-48
Identities = 59/327 (18%), Positives = 116/327 (35%), Gaps = 49/327 (14%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
+ G + + + V +G A G +
Sbjct: 8 QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVL--------- 57
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ + A I+ + T LH A + + K L++ GA+I+ D
Sbjct: 58 -------------RLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
++G P+H AA + ++A+ + + + V A +G+T IA + +++ +
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV--- 159
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
R V + + + L + K+G TA+H+AA G+ +
Sbjct: 160 ------NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTE 213
Query: 469 VLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGE 527
VL+ + ++ +V K G T LH AA++G+ + R L+ + E
Sbjct: 214 VLKLLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACRILVEN-----------LCDM--E 259
Query: 528 LGSESGMTPLHLAAYSGNENVVRLLLN 554
++ G T +A + L
Sbjct: 260 AVNKVGQTAFDVADEDILGYLEELQKK 286
Score = 167 bits (425), Expect = 1e-47
Identities = 73/422 (17%), Positives = 121/422 (28%), Gaps = 128/422 (30%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
+ + G+ L+ + K G L S E V L+
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDT-EEVLRLL 60
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
+ +I N N DG +ALH AC ++ VK L+E GA++
Sbjct: 61 ERGADI---------NYANVDGLTALHQACI-----------DDNVDMVKFLVENGANI- 99
Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
N+ + GW PL A + G+++
Sbjct: 100 ---------------------------------------NQPDNEGWIPLHAAASCGYLD 120
Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFL 303
+ +++ A V + EG + L +A E ++
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ----------------------NE 158
Query: 304 VHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNF 363
V+ I+ + L + G +HVAA +
Sbjct: 159 VNRQGVDIE-------AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211
Query: 364 PEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEAT 423
EV ++ ++A V DG T
Sbjct: 212 TEVLKLLIQARYD-VNIKDYDGW------------------------------------T 234
Query: 424 PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYS 483
PL AA G R+LV+ NK G TA +A ++ LEE++ + L
Sbjct: 235 PLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGY-LEELQKKQNLLHSE 293
Query: 484 KK 485
K+
Sbjct: 294 KR 295
Score = 159 bits (406), Expect = 5e-45
Identities = 60/319 (18%), Positives = 107/319 (33%), Gaps = 42/319 (13%)
Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
G+ L + + + K L AC+ G E V +L
Sbjct: 10 RNEQLKRWIGSETDLEPPVVK-------RKKTKVKFDDGAVFLAACSSGDTEEVLRLLER 62
Query: 252 HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVI 311
A ++ + +G +ALH A + + FLV ++ A I
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVK----------------------FLV-ENGANI 99
Query: 312 DILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
+ PLH AA G L + + L+ GA + A + +G P+ +A + E+ Q
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN-- 157
Query: 372 RAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG 431
V D + L + + T L +AA
Sbjct: 158 -----EVNRQGVDIEAARKEEERIMLRDARQWLN--SGHINDVRHAK-SGGTALHVAAAK 209
Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTA 490
G+ V+++L++A ++ G+T +H AA G + + + ++ + K+G TA
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC-DMEAVNKVGQTA 268
Query: 491 LHVAAYFGQADTVRELLSH 509
VA
Sbjct: 269 FDVADEDILGYLEELQKKQ 287
Score = 155 bits (394), Expect = 4e-43
Identities = 56/375 (14%), Positives = 112/375 (29%), Gaps = 110/375 (29%)
Query: 8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM------------ 55
++ + + + VK D +
Sbjct: 6 AKQKRNEQLKRWIGSETDLEP-PVVKRKKTK-------VKFDDGAVFLAACSSGDTEEVL 57
Query: 56 -LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL+ GA N DG T +H A N+ ++ L+E+G + + G PLH A+
Sbjct: 58 RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
++ + LI ++ +VN +G + L A + + ++ ++
Sbjct: 118 YLDIAEYLISQGAHV---------GAVNSEGDTPLDIAEE-----------EAMEELLQN 157
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
+ G +
Sbjct: 158 EVNRQ---------------------GVD-------------------------IEAARK 171
Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPP 294
+ + + H + G +ALH+AA GY +V
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK--------------- 216
Query: 295 HNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKP 354
L+ ++I TPLH AA G+ + C++L++ ++A + GQ
Sbjct: 217 -------LLI-QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268
Query: 355 IHVAAQNNFPEVAQI 369
VA ++ + ++
Sbjct: 269 FDVADEDILGYLEEL 283
Score = 103 bits (260), Expect = 8e-25
Identities = 33/223 (14%), Positives = 67/223 (30%), Gaps = 29/223 (13%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 403
+ D + ++ + + + DG A G +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVV-KRKKTKVKFDDGAV-FLAACSSGDTEEVLR 58
Query: 404 LMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
L++ G I+ N V T L A + ++V+ LV+ GA+ + G+ +H AA
Sbjct: 59 LLE---RGADINYAN-VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114
Query: 463 QNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTG 521
G+ + E + S A +V + G T L +A + ++ ++
Sbjct: 115 SCGYLDIAEYLISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQNEVNR------------ 161
Query: 522 ASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
+ + L S +
Sbjct: 162 -------QGVDIEAARKEEERIMLRDARQWLN-SGHINDVRHA 196
Score = 77.2 bits (191), Expect = 8e-16
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
E R+ D L +AA K +L+++
Sbjct: 167 EAARKEEERIMLRD-ARQWLNSGHINDVRHAKSGGTALHVAAA-KGYTEVLKLLIQARYD 224
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
N+ DG TP+HAAA +G ++L+E+ D NK+G+T +A + + +L
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284
Query: 123 IQFVQNISQEK 133
+ S+++
Sbjct: 285 KKQNLLHSEKR 295
Score = 44.0 bits (105), Expect = 6e-05
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 10/99 (10%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
T LH+AA K +L+++ N+ + AA + C + L+++
Sbjct: 200 GTALHVAAA-KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI-LVENLCD 257
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
GQT A + +L + K +
Sbjct: 258 MEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 166 bits (423), Expect = 5e-48
Identities = 62/242 (25%), Positives = 115/242 (47%), Gaps = 19/242 (7%)
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
K++PLH AAEAG + +C +L+ GA+ID + + P+ AA+NN E + + +L
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KAGAL 69
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
V +G+TC H+AA +G V++ L+ + ++ ++ TP+ A E H ++V
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD-VNCQDD-GGWTPMIWATEYKHVDLV 127
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAY 496
++L+ G+ + +H AA +G + E + ++K ++++ G + LH+AA
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC-DLHAVNIHGDSPLHIAAR 186
Query: 497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
+ D V LS + L ++ G TPL A+ + + A
Sbjct: 187 ENRYDCVVLFLSR-----------DSDV--TLKNKEGETPLQCASLNSQVWSALQMS-KA 232
Query: 557 GV 558
Sbjct: 233 LQ 234
Score = 141 bits (358), Expect = 7e-39
Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 26/223 (11%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
ML+++GA + ++D +TP+ AA+ +L ++ L++ G K+ G T LHLA++
Sbjct: 29 MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG 88
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
EVV L+ VN ++ G + + +A + + VKL
Sbjct: 89 HYEVVQYLL--------SNGQMDVNCQDDGGWTPMIWATE-----------YKHVDLVKL 129
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
LL G+D++++ H+ A +G D+ +L ++ + G +PL
Sbjct: 130 LLSKGSDINIRDN-EENICLHWAAFSGCVDIAEILLAA--KCDL----HAVNIHGDSPLH 182
Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
IA + V L+ + V + ++EG + L A+ + +
Sbjct: 183 IAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS 225
Score = 129 bits (326), Expect = 2e-34
Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 23/226 (10%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 403
+ P+H AA+ ++ + + + + ++D T AA + ++
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLV-QAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 404 LMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDE-NKTGFTAVHLA 461
L+K +G + ++ +T L LAA+ GH VV+ L+ G + + G+T + A
Sbjct: 63 LIK---AGALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 462 AQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
+ H +++ + S + ++ + LH AA+ G D LL+
Sbjct: 119 TEYKHVDLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIAEILLAA----------- 166
Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
+ G +PLH+AA + V L L S V + +E
Sbjct: 167 KCDL--HAVNIHGDSPLHIAARENRYDCVVLFL-SRDSDVTLKNKE 209
Score = 120 bits (303), Expect = 3e-31
Identities = 58/257 (22%), Positives = 96/257 (37%), Gaps = 48/257 (18%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
+PLH AA D ML+++GA NI +D R LM L+
Sbjct: 12 RSPLHAAAEAGHVD-ICHMLVQAGA-----NIDTCSEDQ-RTPLMEAAENNHLEAVKYLI 64
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG-GDPMYKNKIGETPLHLASRNCKA 116
K+GA + +G T +H AAK G+ +Q LL +G D ++ G TP+ A+
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 117 EVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
++V LL+ +I N + + LH+A + ++LL
Sbjct: 125 DLVKLLLSKGSDI---------NIRDNEENICLHWAAFSGCVD-----------IAEILL 164
Query: 177 EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIA 236
A D+ + ++ H A D + L + +++ + G TPL A
Sbjct: 165 AAKCDLHAVNI-HGDSPLHIAARENRYDCVVLFLSR--DSDV----TLKNKEGETPLQCA 217
Query: 237 CNRGHMELVNTMLNNHA 253
+ M
Sbjct: 218 SLNSQVWSALQMSKALQ 234
Score = 98.6 bits (247), Expect = 1e-23
Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 39/184 (21%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
T LH+AA+ K LL +G ++ + G ++ LL
Sbjct: 78 STCLHLAAK-KGHYEVVQYLLSNGQ----MDVNCQDDGG-WTPMIWATEYKHVDLVKLLL 131
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
G+ N+ ++ +H AA G + ++LL D N G++PLH+A+R + +
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191
Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
V L + ++ N++G + L A + + +
Sbjct: 192 CVVLFLSRDSDV---------TLKNKEGETPLQCASL-----------NSQVWSALQMSK 231
Query: 178 AGAD 181
A D
Sbjct: 232 ALQD 235
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 165 bits (421), Expect = 3e-47
Identities = 65/318 (20%), Positives = 107/318 (33%), Gaps = 50/318 (15%)
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLR- 317
E L A ++ + + L+ + A ++
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQ----------------------QLL-EGGANVNFQEEEG 38
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
TPLH A + + + +LLL GA G P +AA ++ ++FL + +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL-SKGAD 97
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMK-------FDRSGVISARNRVTEATPLQLAAE 430
V G T AA+ G V ++ L K ++ R R AT L AAE
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 431 GGHANVVRVLV-KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS---SKALNVYSK-K 485
GH V+++L+ + GA + G A+ A + + +E + +V + +
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 486 LGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGN 545
G T L +A V+ LL G T L LA
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQE----------HIEI--NDTDSDGKTALLLAVELKL 265
Query: 546 ENVVRLLLNSAGVQVDAQ 563
+ + LL G D
Sbjct: 266 KKIAELLC-KRGASTDCG 282
Score = 161 bits (411), Expect = 8e-46
Identities = 70/312 (22%), Positives = 127/312 (40%), Gaps = 51/312 (16%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI-GETPLHLASRNCKAEVVDLLIQFVQ 127
+ + A + ++ +Q LLE G + ++ + G TPLH A + + ++V+LL++
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
+ ++GA+ A K +KL L GADV+
Sbjct: 64 DP---------VLRKKNGATPFLLAAI-----------AGSVKLLKLFLSKGADVNECDF 103
Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEI------SKALNKQTSIGWTPLLIACNRGH 241
TAF AV G L + ++ G + + + G T L+ A +GH
Sbjct: 104 -YGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160
Query: 242 MELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPN 300
+E++ +L+ A V+ D GR+AL A ++
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSS-----DDSDVEAIT------------- 202
Query: 301 GFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD-LGASIDATDDQGQKPIHVAA 359
L+ DH A +++ R +TPL LA E L + + LL+ I+ TD G+ + +A
Sbjct: 203 HLLL-DHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261
Query: 360 QNNFPEVAQIFL 371
+ ++A++
Sbjct: 262 ELKLKKIAELLC 273
Score = 156 bits (396), Expect = 1e-43
Identities = 78/357 (21%), Positives = 124/357 (34%), Gaps = 98/357 (27%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
L A + +D D LL+ GA N+ + ++G L LL
Sbjct: 6 NHLLIKAVQNEDVDLVQQ-LLEGGA-----NVNFQEEEGGWTPLHNAVQMSREDIVELLL 59
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
+ GA P L +G TP AA G++ L+L L G D + G T A+ K +
Sbjct: 60 RHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119
Query: 118 VVDLLIQFVQNI-SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
+ L + N+ + K E + + GA+AL A + K + +K+LL
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE-----------KGHVEVLKILL 168
Query: 177 -EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
E GADV N ++G L+
Sbjct: 169 DEMGADV----------------------------------------NACDNMGRNALIH 188
Query: 236 ACNRGHM----ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFR 291
A + + +L++ A V+V + G++ L LA E +L +
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ------------ 236
Query: 292 LPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ I+ +T L LA E ++ +LL GAS D D
Sbjct: 237 ----------RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 154 bits (392), Expect = 4e-43
Identities = 63/269 (23%), Positives = 107/269 (39%), Gaps = 43/269 (15%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK-PIHVAAQNNFPEVAQIFLRAHPSL 377
L A + + + + LL+ GA+++ +++G P+H A Q + ++ ++ L H +
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL-RHGAD 64
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA-----TPLQLAAEGG 432
K+G T +AA+ GSV +++ +S V E T AA G
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLF--------LSKGADVNECDFYGFTAFMEAAVYG 116
Query: 433 HANVVRVLVKAGA----------SCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
++ L K GA K G TA+ AA+ GH +VL+ + +V
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176
Query: 483 SK-KLGVTALHVAAYFGQADTVRE----LLSHVPGTVKSDPPTGASFLGELGSESGMTPL 537
+ +G AL A V LL H GA + E G TPL
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDH-----------GADV--NVRGERGKTPL 223
Query: 538 HLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
LA + +V+ LL ++++ +
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSD 252
Score = 148 bits (375), Expect = 1e-40
Identities = 66/319 (20%), Positives = 116/319 (36%), Gaps = 62/319 (19%)
Query: 100 NKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAE 159
L A +N ++V L++ N++ ++ E G + LH A Q
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE--------EEGGWTPLHNAVQ----- 48
Query: 160 LIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
+ V+LLL GAD L+ K N T F A+AG+ +L L + G ++
Sbjct: 49 ------MSREDIVELLLRHGADPVLRKK-NGATPFLLAAIAGSVKLLKLFLSK--GADV- 98
Query: 220 KALNKQTSIGWTPLLIACNRGHMELV----------NTMLNNHARVDVFDQEGRSALHLA 269
N+ G+T + A G ++ + N + + G +AL A
Sbjct: 99 ---NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDA 155
Query: 270 AEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAG 329
AE G+++V L+ + A ++ + L A +
Sbjct: 156 AEKGHVEVLK----------------------ILLDEMGADVNACDNMGRNALIHALLSS 193
Query: 330 Q----LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDG 385
+ LLLD GA ++ ++G+ P+ +A + + Q L + T DG
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG 253
Query: 386 NTCAHIAAMQGSVGVIEEL 404
T +A + E L
Sbjct: 254 KTALLLAVELKLKKIAELL 272
Score = 130 bits (329), Expect = 3e-34
Identities = 64/268 (23%), Positives = 99/268 (36%), Gaps = 41/268 (15%)
Query: 10 RETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGA 61
TPLH A ++ D +LL+ GA P L +AA + L GA
Sbjct: 39 GWTPLHNAVQMSRED-IVELLLRHGADPVLRKKNGATPFLLAAIAGSVK-LLKLFLSKGA 96
Query: 62 GPNLTTDDGQTPVHAAAKYGNLVTLQLLLE----------DGGDPMYKNKIGETPLHLAS 111
N G T AA YG + L+ L + D K G T L A+
Sbjct: 97 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156
Query: 112 RNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKT 171
EV+ +L+ + VN+ + G +AL +A + +
Sbjct: 157 EKGHVEVLKILL------DEMGA--DVNACDNMGRNALIHALLSSDDS----DVEA---I 201
Query: 172 VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWT 231
LLL+ GADV+++ ++ +T + ++ +LEQ EI N S G T
Sbjct: 202 THLLLDHGADVNVRGERG-KTPLILAVEKKHLGLVQRLLEQ-EHIEI----NDTDSDGKT 255
Query: 232 PLLIACNRGHMELVNTMLNNHARVDVFD 259
LL+A ++ + A D D
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283
Score = 121 bits (306), Expect = 4e-31
Identities = 46/193 (23%), Positives = 77/193 (39%), Gaps = 25/193 (12%)
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 440
+ N A V ++++L++ G ++ + TPL A + ++V +L
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLE---GGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58
Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQ 499
++ GA K G T LAA G ++L+ S A +V G TA AA +G+
Sbjct: 59 LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA-DVNECDFYGFTAFMEAAVYGK 117
Query: 500 ADTVRELLSHVPGTVKSDPPTGA--------SFLGELGSESGMTPLHLAAYSGNENVVRL 551
++ L GA E + G T L AA G+ V+++
Sbjct: 118 VKALKFLYKR-----------GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166
Query: 552 LLNSAGVQVDAQT 564
LL+ G V+A
Sbjct: 167 LLDEMGADVNACD 179
Score = 119 bits (302), Expect = 2e-30
Identities = 54/237 (22%), Positives = 89/237 (37%), Gaps = 37/237 (15%)
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
A+++ + A QN ++ Q L ++ + G T H A ++
Sbjct: 1 AAVE-----DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55
Query: 402 EELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHL 460
E L++ G R + ATP LAA G ++++ + GA + + GFTA
Sbjct: 56 ELLLR---HGADPVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFME 111
Query: 461 AAQNGHNQVLE----------EMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
AA G + L+ R +K +K G TAL AA G + ++ LL +
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171
Query: 511 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN----VVRLLLNSAGVQVDAQ 563
GA G L A S +++ + LLL G V+ +
Sbjct: 172 ----------GADV--NACDNMGRNALIHALLSSDDSDVEAITHLLL-DHGADVNVR 215
Score = 55.6 bits (135), Expect = 1e-08
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 11 ETPLHIAARVKDGDRC---ALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKS 59
L A D +LL GA N+ +A K +L +
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242
Query: 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKI 102
N T DG+T + A + +LL + G + +
Sbjct: 243 HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285
Score = 39.4 bits (93), Expect = 0.002
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
L A + + ++V+ LL G V+ Q +E
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEG 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 160 bits (408), Expect = 6e-46
Identities = 55/248 (22%), Positives = 98/248 (39%), Gaps = 23/248 (9%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+ A + G + C+ L++ G + D + +H AA NN ++ + + + ++V
Sbjct: 10 TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVK-YYISKGAIV 68
Query: 379 TATTKD-GNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 436
D +T H A QG + ++ +LMK G S + + + LAA+ GH ++
Sbjct: 69 DQLGGDLNSTPLHWATRQGHLSMVVQLMK---YGADPSLIDG-EGCSCIHLAAQFGHTSI 124
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHN-QVLEEMRSSKA-LNVYSKKLGVTALHVA 494
V L+ G ++ G T + AA H+ + + +N+ K TALH A
Sbjct: 125 VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184
Query: 495 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
G + LL GA+ + + G + L LA N ++ L
Sbjct: 185 VLAGNTTVISLLLEA-----------GANV--DAQNIKGESALDLAKQRKNVWMINHLQ- 230
Query: 555 SAGVQVDA 562
A
Sbjct: 231 EARQAKGY 238
Score = 157 bits (399), Expect = 1e-44
Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 30/260 (11%)
Query: 222 LNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGK 281
+ ++ A G E ++ V D+E + LH AA + + +
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVK-- 59
Query: 282 SLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTL-RKQTPLHLAAEAGQLQVCKLLLDL 340
+ + A++D L TPLH A G L + L+
Sbjct: 60 --------------------YYI-SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 341 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG-SVG 399
GA D +G IH+AAQ + + A V ++G T AA + SV
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLI-AKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 400 VIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAV 458
L+ F V ++ ++ + T L A G+ V+ +L++AGA+ +N G +A+
Sbjct: 158 PTRLLLTF---NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
Query: 459 HLAAQNGHNQVLEEMRSSKA 478
LA Q + ++ ++ ++
Sbjct: 215 DLAKQRKNVWMINHLQEARQ 234
Score = 152 bits (388), Expect = 5e-43
Identities = 60/312 (19%), Positives = 103/312 (33%), Gaps = 84/312 (26%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
D + A +YG + L+E G D +K T LH A+ N + ++V I
Sbjct: 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQK-TVKLLLEAGADV 182
+ Q + ++ LH+A +++ V L++ GAD
Sbjct: 63 SKGAIVDQLG--------GDLNSTPLHWA------------TRQGHLSMVVQLMKYGADP 102
Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
+ G + + +A GH
Sbjct: 103 ----------------------------------------SLIDGEGCSCIHLAAQFGHT 122
Query: 243 ELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGF 302
+V ++ VD+ DQ G + L AA H++ P
Sbjct: 123 SIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT---------------------HSVDPTRL 161
Query: 303 LVHDHAAVIDILT-LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
L+ +++ K T LH A AG V LLL+ GA++DA + +G+ + +A Q
Sbjct: 162 LL-TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
Query: 362 NFPEVAQIFLRA 373
+ A
Sbjct: 221 KNVWMINHLQEA 232
Score = 141 bits (358), Expect = 8e-39
Identities = 59/223 (26%), Positives = 91/223 (40%), Gaps = 19/223 (8%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEE 403
+ DD I A Q E + + V K+ T H AA+ + +++
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 404 LMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 463
+ + ++ +TPL A GH ++V L+K GA + + G + +HLAAQ
Sbjct: 61 YI--SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 464 NGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFG-QADTVRELLSHVPGTVKSDPPTG 521
GH ++ + + +V + G+T L AAY D R LL+
Sbjct: 119 FGHTSIVAYLIAKGQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-----------N 166
Query: 522 ASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
S + T LH A +GN V+ LLL AG VDAQ
Sbjct: 167 VS-VNLGDKYHKNTALHWAVLAGNTTVISLLL-EAGANVDAQN 207
Score = 137 bits (349), Expect = 1e-37
Identities = 55/318 (17%), Positives = 105/318 (33%), Gaps = 81/318 (25%)
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
++ +++ + A Q + + L+EAG DV
Sbjct: 1 HMTHIDDYSTWDIVKATQ-----------YGIYERCRELVEAGYDV-------------- 35
Query: 197 CAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
+ T L A ++LV ++ A VD
Sbjct: 36 --------------------------RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69
Query: 257 VFDQE-GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
+ + LH A G+L + L+ + A ++
Sbjct: 70 QLGGDLNSTPLHWATRQGHLSMVV----------------------QLM-KYGADPSLID 106
Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN-NFPEVAQIFLRAH 374
+ +HLAA+ G + L+ G +D D G P+ AA + + ++ L +
Sbjct: 107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN 166
Query: 375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGH 433
S+ NT H A + G+ VI L++ +G + A+N + L LA + +
Sbjct: 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLE---AGANVDAQNI-KGESALDLAKQRKN 222
Query: 434 ANVVRVLVKAGASCTDEN 451
++ L +A + +N
Sbjct: 223 VWMINHLQEARQAKGYDN 240
Score = 134 bits (341), Expect = 2e-36
Identities = 47/276 (17%), Positives = 90/276 (32%), Gaps = 69/276 (25%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
+ A + I R + L+++G +
Sbjct: 10 TWDIVKATQ--------------------YGIYERCR-------ELVEAGYDVRQPDKEN 42
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYK-NKIGETPLHLASRNCKAEVVDLLIQFVQNI 129
T +H AA + ++ + G + TPLH A+R +V L+++ +
Sbjct: 43 VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADP 102
Query: 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQN 189
+ ++ +G S +H A Q V L+ G DV + + N
Sbjct: 103 ---------SLIDGEGCSCIHLAAQ-----------FGHTSIVAYLIAKGQDVDMMDQ-N 141
Query: 190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL-------NKQTSI-GWTPLLIACNRGH 241
T + A ++ + ++ L N T L A G+
Sbjct: 142 GMTPLMWAAYRTHS------------VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189
Query: 242 MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+++ +L A VD + +G SAL LA + + +
Sbjct: 190 TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM 225
Score = 107 bits (270), Expect = 1e-26
Identities = 50/258 (19%), Positives = 84/258 (32%), Gaps = 81/258 (31%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
T LH AA + + GA + D + L L+
Sbjct: 43 VTLLHWAAI-NNRIDLVKYYISKGA-----IVDQLGGDLNSTPLHWATRQGHLSMVVQLM 96
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC-KA 116
K GA P+L +G + +H AA++G+ + L+ G D ++ G TPL A+
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 117 EVVDLLIQFVQNISQEKVLEYVNSV-NEDGASALHYACQVTKAELIPITSKEDQKTVKLL 175
+ LL+ F ++ N +ALH+A + + LL
Sbjct: 157 DPTRLLLTFNVSV---------NLGDKYHKNTALHWAVL-----------AGNTTVISLL 196
Query: 176 LEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
LEAGA+V + Q G + L +
Sbjct: 197 LEAGANV----------------------------------------DAQNIKGESALDL 216
Query: 236 ACNRGHMELVNTMLNNHA 253
A R ++ ++N +
Sbjct: 217 AKQRKNVWMINHLQEARQ 234
Score = 89.8 bits (224), Expect = 2e-20
Identities = 44/188 (23%), Positives = 68/188 (36%), Gaps = 44/188 (23%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALML 56
TPLH A R V L+K GA P+L + +AA+ L
Sbjct: 77 STPLHWATRQGHLSMVV-------QLMKYGADPSLIDGEGCSCIHLAAQ-FGHTSIVAYL 128
Query: 57 LKSGAGPNLTTDDGQTPVHAAAKYGN-LVTLQLLLEDGGDPMYKNKI-GETPLHLASRNC 114
+ G ++ +G TP+ AA + + +LLL +K T LH A
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
V+ LL++ + V++ N G SAL A Q +++ +
Sbjct: 189 NTTVISLLLE--AGAN-------VDAQNIKGESALDLAKQ-----------RKNVWMINH 228
Query: 175 LLEAGADV 182
L EA
Sbjct: 229 LQEARQAK 236
Score = 60.9 bits (149), Expect = 1e-10
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
+ A +G + REL+ G + +T LH AA +
Sbjct: 9 STWDIVKATQYGIYERCRELVEA-----------GYDV--RQPDKENVTLLHWAAINNRI 55
Query: 547 NVVRLLLNSAGVQVDAQTQEN 567
++V+ + S G VD +
Sbjct: 56 DLVKYYI-SKGAIVDQLGGDL 75
Score = 57.4 bits (140), Expect = 2e-09
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
TPL AA +LL ++ K AL LL
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNV-----SVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
++GA + G++ + A + N+ + L E Y N
Sbjct: 198 EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
Score = 40.1 bits (95), Expect = 8e-04
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 531 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
+ + A G R L+ AG V +EN
Sbjct: 7 DYSTWDIVKATQYGIYERCRELV-EAGYDVRQPDKEN 42
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 159 bits (405), Expect = 2e-45
Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 28/256 (10%)
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
D++G + LH+A G L H ++ L +DI +
Sbjct: 6 DEDGDTPLHIAVVQGNLPAV----------------HRLVN---LFQQGGRELDIYNNLR 46
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR---AHP 375
QTPLHLA V +LL+ GAS A D GQ H+A ++ P + L
Sbjct: 47 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106
Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHA 434
+ A DG T H+A ++ L++ G I A + + +PL A E
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLE---RGADIDAVDIKSGRSPLIHAVENNSL 163
Query: 435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHV 493
++V++L++ GA+ + +G +A+H A+ G ++ + S A + K T L V
Sbjct: 164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA-DSSLKNCHNDTPLMV 222
Query: 494 AAYFGQADTVRELLSH 509
A D +R +
Sbjct: 223 ARSRRVIDILRGKATR 238
Score = 154 bits (392), Expect = 1e-43
Identities = 63/313 (20%), Positives = 102/313 (32%), Gaps = 84/313 (26%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLED----GGDPMYKNKIGETPLHLASRNCKAEVV 119
+DG TP+H A GNL + L+ G + N + +TPLHLA VV
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62
Query: 120 DLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAG 179
LL+ + +++ G +A H AC+ ++ LL++
Sbjct: 63 RLLVTAGASP---------MALDRHGQTAAHLACE-----------HRSPTCLRALLDSA 102
Query: 180 ADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNR 239
A D+ + G T L +A N
Sbjct: 103 APG-------------------TLDL-----------------EARNYDGLTALHVAVNT 126
Query: 240 GHMELVNTMLNNHARVDVFDQE-GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
E V +L A +D D + GRS L A E+ L +
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ------------------- 167
Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
L+ H A ++ + LH A+ G L + + L+ GA + P+ VA
Sbjct: 168 ---LLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Query: 359 AQNNFPEVAQIFL 371
++ +
Sbjct: 224 RSRRVIDILRGKA 236
Score = 154 bits (391), Expect = 2e-43
Identities = 59/244 (24%), Positives = 101/244 (41%), Gaps = 24/244 (9%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDL----GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
TPLH+A G L L++L G +D ++ Q P+H+A P V ++ +
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV-TA 68
Query: 375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF--DRSGVISARNRVTEATPLQLAAEGG 432
+ A + G T AH+A S + L+ + + ARN T L +A
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTE 127
Query: 433 HANVVRVLVKAGASCTDEN-KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTA 490
V++L++ GA + K+G + + A +N +++ + A NV ++ G +A
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA-NVNAQMYSGSSA 186
Query: 491 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
LH A+ G VR L+ GA L + TPL +A +++R
Sbjct: 187 LHSASGRGLLPLVRTLVRS-----------GADS--SLKNCHNDTPLMVARSRRVIDILR 233
Query: 551 LLLN 554
Sbjct: 234 GKAT 237
Score = 149 bits (379), Expect = 8e-42
Identities = 57/267 (21%), Positives = 104/267 (38%), Gaps = 45/267 (16%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
+TPLHIA + L+ + + G ++ +
Sbjct: 10 DTPLHIAVVQGNLP-AVHRLVN----------------------LFQQGGRELDIYNNLR 46
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
QTP+H A ++LL+ G PM ++ G+T HLA + + L+ +
Sbjct: 47 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106
Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
+ + + N DG +ALH A E Q+TV+LLLE GAD+ ++
Sbjct: 107 LD-----LEARNYDGLTALHVAVN-----------TECQETVQLLLERGADIDAVDIKSG 150
Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
+ + + ++ +L+ G + N Q G + L A RG + LV T++
Sbjct: 151 RSPLIHAVENNSLSMVQLLLQH--GANV----NAQMYSGSSALHSASGRGLLPLVRTLVR 204
Query: 251 NHARVDVFDQEGRSALHLAAEHGYLKV 277
+ A + + + L +A + +
Sbjct: 205 SGADSSLKNCHNDTPLMVARSRRVIDI 231
Score = 136 bits (345), Expect = 6e-37
Identities = 58/353 (16%), Positives = 105/353 (29%), Gaps = 121/353 (34%)
Query: 99 KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
++ G+TPLH+A V L+ Q +E ++ N + LH A
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-----LDIYNNLRQTPLHLAVI---- 55
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
T V+LL+ AGA
Sbjct: 56 ----TTLPS---VVRLLVTAGASP------------------------------------ 72
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHAR----VDVFDQEGRSALHLAAEHGY 274
G T +AC + +L++ A ++ + +G +ALH+A
Sbjct: 73 ----MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 275 LKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK-QTPLHLAAEAGQLQV 333
+ L+ + A ID + ++ ++PL A E L +
Sbjct: 129 QETVQ----------------------LLL-ERGADIDAVDIKSGRSPLIHAVENNSLSM 165
Query: 334 CKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 393
+LLL GA+++A G +H A+ + + +R + + +T
Sbjct: 166 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDT------ 218
Query: 394 MQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 446
PL +A +++R AS
Sbjct: 219 ------------------------------PLMVARSRRVIDILRGKATRPAS 241
Score = 129 bits (327), Expect = 2e-34
Identities = 47/229 (20%), Positives = 77/229 (33%), Gaps = 25/229 (10%)
Query: 344 IDATDDQGQKPIHVAAQNNFPEVAQI---FLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 400
D+ G P+H+A + + T H+A + V
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 401 IEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD----ENKTGFT 456
+ L+ A +R T LA E +R L+ + A T N G T
Sbjct: 62 VRLLV--TAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118
Query: 457 AVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVK 515
A+H+A + ++ + A ++ K G + L A V+ LL H
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH------ 172
Query: 516 SDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
GA+ SG + LH A+ G +VR L+ +G +
Sbjct: 173 -----GANV--NAQMYSGSSALHSASGRGLLPLVRTLV-RSGADSSLKN 213
Score = 119 bits (301), Expect = 6e-31
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMK-FDRSGV-ISARNRVTEATPLQLAAEGGHA 434
+ T +DG+T HIA +QG++ + L+ F + G + N TPL LA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLP 59
Query: 435 NVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA---LNVYSK-KLGVTA 490
+VVR+LV AGAS ++ G TA HLA ++ L + S A L++ ++ G+TA
Sbjct: 60 SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 491 LHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVR 550
LHVA +TV+ LL GA + + +SG +PL A + + ++V+
Sbjct: 120 LHVAVNTECQETVQLLLER-----------GAD-IDAVDIKSGRSPLIHAVENNSLSMVQ 167
Query: 551 LLLNSAGVQVDAQT 564
LLL G V+AQ
Sbjct: 168 LLL-QHGANVNAQM 180
Score = 86.0 bits (214), Expect = 3e-19
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 19/126 (15%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
T LH+A + +LL+ GA + +I K G R L+ LL
Sbjct: 117 LTALHVAVN-TECQETVQLLLERGADIDAVDI----KSG-RSPLIHAVENNSLSMVQLLL 170
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
+ GA N G + +H+A+ G L ++ L+ G D KN +TPL +A +
Sbjct: 171 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 230
Query: 118 VVDLLI 123
++
Sbjct: 231 ILRGKA 236
Score = 52.5 bits (127), Expect = 8e-08
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKS 59
K +PL A + +LL+ GA N A+ + L++S
Sbjct: 148 KSGRSPLIHAVE-NNSLSMVQLLLQHGANVNAQMYSGSSALHSASG-RGLLPLVRTLVRS 205
Query: 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
GA +L TP+ A + L+
Sbjct: 206 GADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 152 bits (388), Expect = 3e-43
Identities = 56/240 (23%), Positives = 88/240 (36%), Gaps = 20/240 (8%)
Query: 319 QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHP 375
PLH A + V +LL + + D G+ P+H + E+ L +
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435
+L G T HIA G++ V++ L ++ T L LA
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFE 121
Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVA 494
V + L++ GAS ++K +H AA G +++E + V + K G T L A
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 495 AYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
G D L+ GA + +L G +A NE V + LN
Sbjct: 182 LAEGHGDAAVLLVEKY----------GAEY--DLVDNKGAKAEDVAL---NEQVKKFFLN 226
Score = 147 bits (373), Expect = 5e-41
Identities = 60/274 (21%), Positives = 99/274 (36%), Gaps = 53/274 (19%)
Query: 102 IGETPLHLASR-NCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAEL 160
+ PLH A N +V +LL + ++DG LH++
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLL---------LQKDQDGRIPLHWSVS------ 45
Query: 161 IPITSKEDQKTVKLLLEAGADVSLQTKQNH--ETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+ + LL +V+L + T FH GN +V+ + ++ ++
Sbjct: 46 -----FQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS 278
NK T+ G T L +A + E+ ++ N A V + D+ + LH AA G LK+
Sbjct: 101 ----NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
L + ++ + TPL A G LL+
Sbjct: 157 E----------------------LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194
Query: 339 D-LGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
+ GA D D++G K VA V + FL
Sbjct: 195 EKYGAEYDLVDNKGAKAEDVALNEQ---VKKFFL 225
Score = 132 bits (336), Expect = 7e-36
Identities = 49/256 (19%), Positives = 82/256 (32%), Gaps = 36/256 (14%)
Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
LH A V L +++ + P
Sbjct: 2 SNYPLHQACMENEFFK---------VQEL------------LH-SKPSLLLQKDQDGRIP 39
Query: 322 LHLAAEAGQLQVCKLLLDLGASI---DATDDQGQKPIHVAAQNNFPEVAQIFL-RAHPSL 377
LH + ++ LL ++ D DD G P H+A EV + R
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 436
+ T G TC H+A + V + L++ +G + +++ PL AA G +
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIE---NGASVRIKDK-FNQIPLHRAASVGSLKL 155
Query: 437 VRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVA 494
+ +L G S + +K G+T + A GH + G A VA
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Query: 495 AYFGQADTVRELLSHV 510
+ L++V
Sbjct: 216 L---NEQVKKFFLNNV 228
Score = 132 bits (335), Expect = 9e-36
Identities = 55/275 (20%), Positives = 88/275 (32%), Gaps = 64/275 (23%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
PLH A + + +L + + DG
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKD--------------------------QDG 36
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDP---MYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127
+ P+H + + LL + Y + G TP H+A EVV L
Sbjct: 37 RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
+N + G + LH A K+ + + L+E GA V ++ K
Sbjct: 97 KPD-------LNKITNQGVTCLHLAVG-----------KKWFEVSQFLIENGASVRIKDK 138
Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTE--ISK---ALNKQTSIGWTPLLIACNRGHM 242
++ H A G+ + E A+N Q GWTPL A GH
Sbjct: 139 -FNQIPLHRAASVGSLKL----------IELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187
Query: 243 ELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLK 276
+ ++ + A D+ D +G A +A K
Sbjct: 188 DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 222
Score = 129 bits (326), Expect = 2e-34
Identities = 48/221 (21%), Positives = 80/221 (36%), Gaps = 24/221 (10%)
Query: 351 GQKPIHVAAQ-NNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDR 409
P+H A N F +V ++ + PSL+ +DG H + + + L+
Sbjct: 2 SNYPLHQACMENEFFKVQELLH-SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS--- 57
Query: 410 SGV-ISARNRVTEA--TPLQLAAEGGHANVVRVLV--KAGASCTDENKTGFTAVHLAAQN 464
++ + ++ TP +A G+ VV+ L G T +HLA
Sbjct: 58 KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117
Query: 465 GHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGAS 523
+V + + + A +V K K LH AA G + L G S
Sbjct: 118 KWFEVSQFLIENGA-SVRIKDKFNQIPLHRAASVGSLKLIELLCGL-----------GKS 165
Query: 524 FLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
+ + G TPL A G+ + LL+ G + D
Sbjct: 166 AVNW-QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205
Score = 128 bits (325), Expect = 3e-34
Identities = 54/284 (19%), Positives = 89/284 (31%), Gaps = 66/284 (23%)
Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
H + + +L + + ++ G PL + + E+ + +L+
Sbjct: 3 NYPLHQACMENEFFKVQELLHS-KPSLL----LQKDQDGRIPLHWSVSFQAHEITSFLLS 57
Query: 251 NHARV---DVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307
V D D G + H+A G L+V KSL
Sbjct: 58 KMENVNLDDYPDDSGWTPFHIACSVGNLEVV--KSL-------------------YDRPL 96
Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 367
++ +T + T LHLA +V + L++ GAS+ D Q P+H AA ++
Sbjct: 97 KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 368 QIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQL 427
++ S V K G TPL
Sbjct: 157 ELLCGLGKSAVNWQDKQGW------------------------------------TPLFH 180
Query: 428 AAEGGHANVVRVLV-KAGASCTDENKTGFTAVHLAAQNGHNQVL 470
A GH + +LV K GA + G A +A +
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFF 224
Score = 52.8 bits (128), Expect = 6e-08
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 15/83 (18%)
Query: 486 LGVTALHVAAYFGQADTVRELL-SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544
+ LH A + V+ELL S + + G PLH +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSK-----------PSLL--LQKDQDGRIPLHWSVSFQ 47
Query: 545 NENVVRLLLNSAGVQVDAQTQEN 567
+ LL S V+ +
Sbjct: 48 AHEITSFLL-SKMENVNLDDYPD 69
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 152 bits (385), Expect = 6e-43
Identities = 35/250 (14%), Positives = 69/250 (27%), Gaps = 33/250 (13%)
Query: 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+SK K G + A + + + + G +
Sbjct: 1 MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL 60
Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 337
+ + PLH AA+ G L +
Sbjct: 61 I----------------------------PSNYVAEQAESIDNPLHEAAKRGNLSWLREC 92
Query: 338 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGS 397
LD ++ D G ++ A ++ ++ + K G+T H AA +G
Sbjct: 93 LDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY 152
Query: 398 VGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFT 456
+++ L+ G RN + +A A++++ A T N +
Sbjct: 153 ADIVQLLLA---KGARTDLRNI-EKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYL 208
Query: 457 AVHLAAQNGH 466
+ H
Sbjct: 209 DDEDSDLEHH 218
Score = 141 bits (357), Expect = 7e-39
Identities = 43/302 (14%), Positives = 78/302 (25%), Gaps = 89/302 (29%)
Query: 61 AGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD 120
P GQ V A T L + GD +Y + +T + + ++
Sbjct: 3 KPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP 62
Query: 121 LLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGA 180
V E + LH A + + + ++ L+
Sbjct: 63 SNY--------------VAEQAESIDNPLHEAAK-----------RGNLSWLRECLDNRV 97
Query: 181 DVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRG 240
V N G T L AC+ G
Sbjct: 98 GV----------------------------------------NGLDKAGSTALYWACHGG 117
Query: 241 HMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIP 299
H ++V + ++ ++ G +ALH AA GY +
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQ-------------------- 157
Query: 300 NGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAA 359
L+ A D+ + K+ +A A + K A ++ + +
Sbjct: 158 --LLL-AKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214
Query: 360 QN 361
Sbjct: 215 LE 216
Score = 122 bits (309), Expect = 3e-32
Identities = 40/249 (16%), Positives = 73/249 (29%), Gaps = 57/249 (22%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
Q + A + + L I D + + V
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI------PSNYV 66
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
+ + PL AA+ G+ + +R
Sbjct: 67 AEQAESIDN------------------------------------PLHEAAKRGNLSWLR 90
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 497
+ +K G TA++ A GH ++E + + + + + KLG TALH AA+
Sbjct: 91 ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150
Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 557
G AD V+ LL+ GA +L + +A + ++++
Sbjct: 151 GYADIVQLLLAK-----------GART--DLRNIEKKLAFDMATNAACASLLKKKQ-GTD 196
Query: 558 VQVDAQTQE 566
E
Sbjct: 197 AVRTLSNAE 205
Score = 120 bits (304), Expect = 2e-31
Identities = 42/272 (15%), Positives = 71/272 (26%), Gaps = 72/272 (26%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGD-------RCALMLLKSGAGP 63
+ + A + L +I D L
Sbjct: 13 QVKVFRALYTFEPR-TPDELYIEEG-----DIIYITDMSDTNWWKGTSKGRTGLIPSNYV 66
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
+ P+H AAK GNL L+ L++ +K G T L+ A ++V++L
Sbjct: 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML- 125
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
+Q + +N N+ G +ALH A K V+LLL GA
Sbjct: 126 -----FTQPNIE--LNQQNKLGDTALHAAAW-----------KGYADIVQLLLAKGART- 166
Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
+ + +A N
Sbjct: 167 ---------------------------------------DLRNIEKKLAFDMATNAACAS 187
Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYL 275
L+ A + + E + +
Sbjct: 188 LLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219
Score = 98.5 bits (246), Expect = 1e-23
Identities = 40/188 (21%), Positives = 64/188 (34%), Gaps = 23/188 (12%)
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
K G A +EL G I T G ++
Sbjct: 7 KPVKPGQVKVFRALYTFEPRTPDELYI--EEGDIIYITD-MSDTNWWKGTSKGRTGLIP- 62
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFG 498
++ ++ +H AA+ G+ L E ++ V K G TAL+ A + G
Sbjct: 63 ----SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGG 117
Query: 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558
D V L + ++ G T LH AA+ G ++V+LLL + G
Sbjct: 118 HKDIVEMLFTQP----------NIEL--NQQNKLGDTALHAAAWKGYADIVQLLL-AKGA 164
Query: 559 QVDAQTQE 566
+ D + E
Sbjct: 165 RTDLRNIE 172
Score = 57.3 bits (139), Expect = 2e-09
Identities = 16/106 (15%), Positives = 23/106 (21%), Gaps = 27/106 (25%)
Query: 8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
KL +T LH AA K +LL GA +L
Sbjct: 138 KLGDTALHAAAW---------------------------KGYADIVQLLLAKGARTDLRN 170
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
+ + A L+ N +
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLE 216
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 152 bits (386), Expect = 3e-42
Identities = 48/323 (14%), Positives = 103/323 (31%), Gaps = 57/323 (17%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
G I + + + D G SA + A +++
Sbjct: 1 GMDLSRINT--WKSKQL-KSFLSSKDTFKADVHGHSASYYAIADNNVRLVC--------- 48
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ + A+ ++L + PLH AA ++ K+LL G D
Sbjct: 49 -------------TLL-NAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFD 92
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDG-NTCAHIAAMQGSVGVIEELMKF 407
D+G ++ A + + ++F+ + K G T + A M V ++ +
Sbjct: 93 DKGNTALYYAVDSGNMQTVKLFV-KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS- 150
Query: 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAV-HLAAQNGH 466
+ + + + + GH +++ +L+ S N F LA N
Sbjct: 151 --EIPSTFDLA-ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD 207
Query: 467 NQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG 526
++L+ + N+Y +A A+ + ++
Sbjct: 208 IEMLQALFKYDI-NIY------SANLENVLLDDAEIAKMIIEK-----------HV---- 245
Query: 527 ELGSESGMTPLHLAAYSGNENVV 549
E S+S L + + + ++
Sbjct: 246 EYKSDSYTKDLDIVKNNKLDEII 268
Score = 150 bits (382), Expect = 9e-42
Identities = 30/247 (12%), Positives = 84/247 (34%), Gaps = 28/247 (11%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+ + A +++ LL+ GA + + + P+H AA ++ +I L
Sbjct: 32 HSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILL-FSGLDD 88
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
+ GNT + A G++ ++ + ++ + + T A ++V
Sbjct: 89 SQFDDKGNTALYYAVDSGNMQTVKLFV--KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYF 497
+ S T + + +H+ +NGH ++ + N + L + + +A
Sbjct: 147 YFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN 205
Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 557
+ ++ L + + + + + ++++
Sbjct: 206 KDIEMLQALFKY-----------DI---------NIYSANLENVLLDDAEIAKMII-EKH 244
Query: 558 VQVDAQT 564
V+ + +
Sbjct: 245 VEYKSDS 251
Score = 136 bits (346), Expect = 1e-36
Identities = 40/361 (11%), Positives = 89/361 (24%), Gaps = 108/361 (29%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAGP 63
I L S + A + LL +GA
Sbjct: 3 DLSRINT----WKSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVR-LVCTLLNAGALK 57
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
NL + + P+H AA + +++LL G D + G T L+ A + + V L +
Sbjct: 58 NLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFV 115
Query: 124 QFVQNISQEKVLEYVNSVNEDGAS-ALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
+ + + G + ++A D V L
Sbjct: 116 KKNWRL---------MFYGKTGWKTSFYHAVM-----------LNDVSIVSYFLSEIPS- 154
Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
+I + + I GH+
Sbjct: 155 ----------------------------------------TFDLAILLSCIHITIKNGHV 174
Query: 243 ELVNTMLNNHARVDVFDQEGRS-ALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG 301
+++ +L+ + + + LA ++ +++
Sbjct: 175 DMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ---------------------- 212
Query: 302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
L + I + ++ K++++ + I +
Sbjct: 213 ALF-KYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKL 264
Query: 362 N 362
+
Sbjct: 265 D 265
Score = 134 bits (339), Expect = 1e-35
Identities = 38/247 (15%), Positives = 80/247 (32%), Gaps = 28/247 (11%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+ + + K L D G + A +N + L +L
Sbjct: 2 MDLSRINT--WKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLL-NAGALK 57
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
+ H AA +++ L+ SG+ S + T L A + G+ V
Sbjct: 58 NL--LENEFPLHQAATLEDTKIVKILLF---SGLDDSQFDD-KGNTALYYAVDSGNMQTV 111
Query: 438 RVLVKAGASCTDENKTGF-TAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY 496
++ VK KTG+ T+ + A ++ S + + + ++ +H+
Sbjct: 112 KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLAILLSCIHITIK 170
Query: 497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTP-LHLAAYSGNENVVRLLLNS 555
G D + LL + S + P + LA + + +++ L
Sbjct: 171 NGHVDMMILLLDY-----------MTST--NTNNSLLFIPDIKLAIDNKDIEMLQALF-K 216
Query: 556 AGVQVDA 562
+ + +
Sbjct: 217 YDINIYS 223
Score = 124 bits (315), Expect = 2e-32
Identities = 41/282 (14%), Positives = 81/282 (28%), Gaps = 44/282 (15%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN------IAARVKDGDRCALMLLKSGAGPN 64
+ + A + LL +GA NL AA ++D +LL SG +
Sbjct: 32 HSASYYAIADNNVR-LVCTLLNAGALKNLLENEFPLHQAATLEDTK-IVKILLFSGLDDS 89
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIG-ETPLHLASRNCKAEVVDLLI 123
D G T ++ A GN+ T++L ++ M+ K G +T + A +V +
Sbjct: 90 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
+ + S +H + + LLL+ +
Sbjct: 150 SEIPS----------TFDLAILLSCIHITIK-----------NGHVDMMILLLDYMTSTN 188
Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
+ ++L + + I A E
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIEMLQALFKY--DINIYSANL-----------ENVLLDDAE 235
Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKH 285
+ ++ H + + + +S K L+
Sbjct: 236 IAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI-ISKNKELRL 276
Score = 120 bits (303), Expect = 1e-30
Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 30/216 (13%)
Query: 355 IHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVIS 414
+ ++ G++ ++ A +V ++ L ++
Sbjct: 4 LSRINTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTL--------LN 52
Query: 415 AR---NRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
A N + PL AA +V++L+ +G + + G TA++ A +G+ Q ++
Sbjct: 53 AGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112
Query: 472 EMRSSKA-LNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS 530
L Y K T+ + A V LS +P T
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA------------- 159
Query: 531 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
++ +H+ +G+ +++ LLL +
Sbjct: 160 -ILLSCIHITIKNGHVDMMILLL-DYMTSTNTNNSL 193
Score = 55.2 bits (134), Expect = 1e-08
Identities = 9/131 (6%), Positives = 33/131 (25%), Gaps = 26/131 (19%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
+ +HI + ++LL N N + L
Sbjct: 162 LSCIHITIK-NGHVDMMILLLDYMTSTNTNN-----SLLFIPDIKLAIDNKDIEMLQALF 215
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
K + + + ++++E + + + + ++ +
Sbjct: 216 KYDI-------NIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEII 268
Query: 118 VVDLLIQFVQN 128
+ ++ +
Sbjct: 269 SKNKELRLMYV 279
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 149 bits (380), Expect = 9e-42
Identities = 65/326 (19%), Positives = 114/326 (34%), Gaps = 96/326 (29%)
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTL-------------QLLLEDGGDPM-YKNKIGETPLH 108
N+ DG TP+ A+ G + + G ++ GET LH
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62
Query: 109 LASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKED 168
LA+R +++ L++ + N + G + LH A +
Sbjct: 63 LAARYSRSDAAKRLLEASADA---------NIQDNMGRTPLHAAVS-----------ADA 102
Query: 169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSI 228
Q ++L+ A D+ + +
Sbjct: 103 QGVFQILIRNRAT----------------------DL-----------------DARMHD 123
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
G TPL++A ++ ++N+HA V+ D G+SALH AA + +
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV--------- 174
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ + A D+ R++TPL LAA G + K+LLD A+ D TD
Sbjct: 175 -------------VLL-KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAH 374
+ P +A + ++ ++ H
Sbjct: 221 HMDRLPRDIAQERMHHDIVRLLDLEH 246
Score = 147 bits (374), Expect = 7e-41
Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 24/261 (9%)
Query: 255 VDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDIL 314
V+V +G + L +A+ G + + + + F+ A++ +
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEED--------APAVISDFIYQ-GASLHNQT 53
Query: 315 TLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
+T LHLAA + K LL+ A + D+ G+ P+H A + V QI +R
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA-----TPLQLAA 429
+ + A DG T +AA G++E+L I++ V + L AA
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDL--------INSHADVNAVDDLGKSALHWAA 165
Query: 430 EGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGV 488
+ + VL+K GA+ +N T + LAA+ G + + + A N +
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA-NRDITDHMDR 224
Query: 489 TALHVAAYFGQADTVRELLSH 509
+A D VR L
Sbjct: 225 LPRDIAQERMHHDIVRLLDLE 245
Score = 139 bits (352), Expect = 9e-38
Identities = 63/335 (18%), Positives = 102/335 (30%), Gaps = 97/335 (28%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAG-PNLTTDD 69
TPL IA+ G + + A + D + GA N T
Sbjct: 11 FTPLMIASCSGGGLETGNSEEEE-------DAPAVISD-------FIYQGASLHNQTDRT 56
Query: 70 GQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI 129
G+T +H AA+Y + LLE D ++ +G TPLH A V +LI
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI------ 110
Query: 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQN 189
+++ DG + L A ++ ++ L+ + ADV
Sbjct: 111 --RNRATDLDARMHDGTTPLILAARLAVEG-----------MLEDLINSHADV------- 150
Query: 190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTML 249
N +G + L A +++ +L
Sbjct: 151 ---------------------------------NAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 250 NNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAA 309
N A D+ + + L LAA G + + L+ DH A
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAK----------------------VLL-DHFA 214
Query: 310 VIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASI 344
DI + P +A E + +LL
Sbjct: 215 NRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249
Score = 137 bits (348), Expect = 3e-37
Identities = 58/317 (18%), Positives = 94/317 (29%), Gaps = 81/317 (25%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKED--QKTVKLLLEAGADVSLQTKQNHETAFH 195
VN DG + L A + +E+ + + GA +
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH------------ 50
Query: 196 YCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARV 255
N+ G T L +A + +L A
Sbjct: 51 ---------------------------NQTDRTGETALHLAARYSRSDAAKRLLEASADA 83
Query: 256 DVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
++ D GR+ LH A V L+ + A +D
Sbjct: 84 NIQDNMGRTPLHAAVSADAQGVFQ----------------------ILIRNRATDLDARM 121
Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
TPL LAA + + L++ A ++A DD G+ +H AA N + A L +
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV-VLLKNG 180
Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKF-------DRSGVISARNRVTEATPLQLA 428
+ T +AA +GS + L+ D P +A
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR----------LPRDIA 230
Query: 429 AEGGHANVVRVLVKAGA 445
E H ++VR+L
Sbjct: 231 QERMHHDIVRLLDLEHH 247
Score = 112 bits (284), Expect = 2e-28
Identities = 45/247 (18%), Positives = 79/247 (31%), Gaps = 71/247 (28%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
TPL +A+ +G G + + + + P V F+ SL
Sbjct: 11 FTPLMIASCSGG--------------------GLETGNSEEEEDAPAVISDFIYQGASLH 50
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
T + G T L LAA ++ +
Sbjct: 51 NQTDRTGET------------------------------------ALHLAARYSRSDAAK 74
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 497
L++A A ++ G T +H A V + + ++A ++ ++ G T L +AA
Sbjct: 75 RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 134
Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 557
+ +L++ A + G + LH AA N + +LL G
Sbjct: 135 AVEGMLEDLINS-----------HADV--NAVDDLGKSALHWAAAVNNVDAAVVLL-KNG 180
Query: 558 VQVDAQT 564
D Q
Sbjct: 181 ANKDMQN 187
Score = 94.5 bits (236), Expect = 5e-22
Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 39/189 (20%)
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
V DG T IA+ G E V+
Sbjct: 3 VNVRGPDGFTPLMIASCSGGG-----------------------LETGNSEEEEDAPAVI 39
Query: 438 RVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAA 495
+ GAS ++ ++TG TA+HLAA+ + + + + A + + +G T LH A
Sbjct: 40 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-DANIQDNMGRTPLHAAV 98
Query: 496 YFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNS 555
+ L+ + A+ L G TPL LAA E ++ L+ +
Sbjct: 99 SADAQGVFQILIRN-----------RATDLDA-RMHDGTTPLILAARLAVEGMLEDLI-N 145
Query: 556 AGVQVDAQT 564
+ V+A
Sbjct: 146 SHADVNAVD 154
Score = 69.0 bits (170), Expect = 2e-13
Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRS------------SKALNVYSKK--LGVTALHVAAY 496
GFT + +A+ +G + +++++ G TALH+AA
Sbjct: 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 497 FGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
+ ++D + LL A + G TPLH A + + V ++L+ +
Sbjct: 67 YSRSDAAKRLLEA-----------SADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 557 GVQVDAQTQE 566
+DA+ +
Sbjct: 114 ATDLDARMHD 123
Score = 57.5 bits (140), Expect = 2e-09
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 22/104 (21%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGDRCALML 56
++ LH AA V + D A++LLK+GA ++ N +AAR K +L
Sbjct: 158 KSALHWAAAVNNVD-AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK-------VL 209
Query: 57 LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN 100
L A ++T + P A + + ++LL + + +
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 149 bits (378), Expect = 1e-41
Identities = 50/306 (16%), Positives = 101/306 (33%), Gaps = 82/306 (26%)
Query: 67 TDDGQTPVHAAAKYGNLVT----LQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLL 122
T+DG + +H A + ++ + D ++N + +TPLHLA + E+ + L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 123 IQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADV 182
+ + + G + LH AC+ + +V +L ++
Sbjct: 65 LGAGCDP---------ELRDFRGNTPLHLACE-----------QGCLASVGVLTQSCTTP 104
Query: 183 SLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHM 242
L + A N + G T L +A G++
Sbjct: 105 HLHSILK----------ATNYN------------------------GHTCLHLASIHGYL 130
Query: 243 ELVNTMLNNHARVDVFDQ-EGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNG 301
+V +++ A V+ + GR+ALHLA + + S
Sbjct: 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS---------------------- 168
Query: 302 FLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQN 361
L+ A ++ +T + +P L ++ + L L + + ++
Sbjct: 169 LLL-KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227
Query: 362 NFPEVA 367
F E
Sbjct: 228 EFTEFT 233
Score = 146 bits (372), Expect = 8e-41
Identities = 53/268 (19%), Positives = 88/268 (32%), Gaps = 43/268 (16%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
++ LH+A + + A N +
Sbjct: 9 DSFLHLAII-------------HEEKALTMEVIR----------QVKGDLAFLNFQNNLQ 45
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
QTP+H A + LL G DP ++ G TPLHLA V +L Q
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
+ + + N +G + LH A V+LL+ GADV+ Q N
Sbjct: 106 LHSI---LKATNYNGHTCLHLASI-----------HGYLGIVELLVSLGADVNAQEPCNG 151
Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
TA H N D+++ +L+ G ++ N+ T G++P + R + +
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKC--GADV----NRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205
Query: 251 NHARVDVFDQEGRSALHLAAEHGYLKVS 278
E E + + +
Sbjct: 206 LTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 145 bits (368), Expect = 3e-40
Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 28/251 (11%)
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
++G S LHLA H K+L V+ A ++ +
Sbjct: 5 TEDGDSFLHLAIIHEE------KALTMEVIRQVK-------------GDLAFLNFQNNLQ 45
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL-----RA 373
QTPLHLA Q ++ + LL G + D +G P+H+A + +
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 374 HPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGG 432
S++ AT +G+TC H+A++ G +G++E L+ G ++A+ T L LA +
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVS---LGADVNAQEPCNGRTALHLAVDLQ 162
Query: 433 HANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALH 492
+ ++V +L+K GA G++ L ++ +++ N+
Sbjct: 163 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222
Query: 493 VAAYFGQADTV 503
+
Sbjct: 223 YDTESEFTEFT 233
Score = 141 bits (357), Expect = 9e-39
Identities = 56/259 (21%), Positives = 89/259 (34%), Gaps = 62/259 (23%)
Query: 319 QTPLHLAAEAGQ----LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
+ LHLA + ++V + + A ++ ++ Q P+H+A N PE+A+ L A
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 375 PSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHA 434
GNT PL LA E G
Sbjct: 69 CD-PELRDFRGNT------------------------------------PLHLACEQGCL 91
Query: 435 NVVRVLVKAGASCTDE------NKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLG 487
V VL ++ + N G T +HLA+ +G+ ++E + S A +N G
Sbjct: 92 ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG 151
Query: 488 VTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
TALH+A D V LL GA + G +P L +
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKC-----------GADV--NRVTYQGYSPYQLTWGRPSTR 198
Query: 548 VVRLLLNSAGVQVDAQTQE 566
+ + L ++ E
Sbjct: 199 IQQQLG-QLTLENLQMLPE 216
Score = 126 bits (320), Expect = 1e-33
Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 46/264 (17%)
Query: 224 KQTSIGWTPLLIACNRGH----MELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
+ T G + L +A ME++ + + A ++ + ++ LHLA +++
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 339
L+ ++ R TPLHLA E G L +L
Sbjct: 63 ----------------------ALL-GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 340 LGA------SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAA 393
+ AT+ G +H+A+ + + + ++ + + +G T H+A
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
Query: 394 MQGSVGVIEELMKFDRSGVISAR---NRVTEA--TPLQLAAEGGHANVVRVLVKAGASCT 448
+ ++ L + NRVT +P QL + + L +
Sbjct: 160 DLQNPDLVSLL--------LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 211
Query: 449 DENKTGFTAVHLAAQNGHNQVLEE 472
++ + E+
Sbjct: 212 QMLPESEDEESYDTESEFTEFTED 235
Score = 120 bits (303), Expect = 3e-31
Identities = 48/193 (24%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKF--DRSGVISARNRVTEATPLQLAAEGGHANVV 437
T+DG++ H+A + + E+++ ++ +N + TPL LA +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIA 61
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKL------GVTAL 491
L+ AG + G T +HLA + G + + S L G T L
Sbjct: 62 EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 492 HVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRL 551
H+A+ G V L+S GA + +G T LHLA N ++V L
Sbjct: 122 HLASIHGYLGIVELLVSL-----------GAD-VNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 552 LLNSAGVQVDAQT 564
LL G V+ T
Sbjct: 170 LL-KCGADVNRVT 181
Score = 74.9 bits (185), Expect = 2e-15
Identities = 26/121 (21%), Positives = 39/121 (32%), Gaps = 18/121 (14%)
Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRS---SKALNVYSK-KLGVTALHVAAYFGQADTVREL 506
+ G + +HLA + + E+ + + L T LH+A Q + L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 507 LSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
L G EL G TPLHLA G V +L + +
Sbjct: 65 LGA-----------GCDP--ELRDFRGNTPLHLACEQGCLASVGVLT-QSCTTPHLHSIL 110
Query: 567 N 567
Sbjct: 111 K 111
Score = 67.6 bits (166), Expect = 6e-13
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 11/119 (9%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN---------IAARVKDGDRCALMLLKSGA 61
T LH+A+ +L+ GA N +A +++ D +LLK GA
Sbjct: 118 HTCLHLASI-HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD-LVSLLLKCGA 175
Query: 62 GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD 120
N T G +P + Q L + + + E + + E +
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 140 bits (355), Expect = 2e-38
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 7/193 (3%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+T LHLAA + K LL+ A + D+ G+ P+H A + V QI +R + +
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
A DG T +AA G++E+L+ S ++A + + L AA + +
Sbjct: 86 DARMHDGTTPLILAARLAVEGMLEDLIN---SHADVNAVDD-LGKSALHWAAAVNNVDAA 141
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAY 496
VL+K GA+ +N T + LAA+ G + + + A N + +A
Sbjct: 142 VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA-NRDITDHMDRLPRDIAQE 200
Query: 497 FGQADTVRELLSH 509
D VR L +
Sbjct: 201 RMHHDIVRLLDEY 213
Score = 139 bits (353), Expect = 3e-38
Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 19/228 (8%)
Query: 328 AGQLQVCKLLLDLGASI-DATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGN 386
V + GAS+ + TD G+ +H+AA+ + + A+ L + G
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGR 59
Query: 387 TCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 446
T H A + GV + L++ +R+ + AR TPL LAA ++ L+ + A
Sbjct: 60 TPLHAAVSADAQGVFQILIR-NRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD 117
Query: 447 CTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRE 505
+ G +A+H AA + + + A N + T L +AA G +T +
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA-NKDMQNNREETPLFLAAREGSYETAKV 176
Query: 506 LLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
LL H A+ ++ P +A + ++VRLL
Sbjct: 177 LLDH-----------FANR--DITDHMDRLPRDIAQERMHHDIVRLLD 211
Score = 134 bits (341), Expect = 1e-36
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 27/223 (12%)
Query: 56 LLKSGAG-PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+ GA N T G+T +H AA+Y + LLE D ++ +G TPLH A
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
V +LI +++ DG + L A ++ ++
Sbjct: 70 AQGVFQILI--------RNRATDLDARMHDGTTPLILAARLAVEG-----------MLED 110
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
L+ + ADV+ ++A H+ A N D +L+ G + Q + TPL
Sbjct: 111 LINSHADVNAVDDLG-KSALHWAAAVNNVDAAVVLLKN--GANK----DMQNNREETPLF 163
Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+A G E +L++ A D+ D R +A E + +
Sbjct: 164 LAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI 206
Score = 125 bits (317), Expect = 2e-33
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 31/235 (13%)
Query: 171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW 230
+ + GA + QT + ETA H A +D +LE + N Q ++G
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADA----NIQDNMGR 59
Query: 231 TPLLIACNRGHMELVNTMLNNHAR-VDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
TPL A + + ++ N A +D +G + L LAA +
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE---------- 109
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
L+ + A ++ + ++ LH AA + +LL GA+ D ++
Sbjct: 110 ------------DLI-NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156
Query: 350 QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
+ + P+ +AA+ E A++ L H + T IA + ++ L
Sbjct: 157 REETPLFLAAREGSYETAKVLL-DHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210
Score = 124 bits (315), Expect = 5e-33
Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 28/224 (12%)
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
N+ G T L +A + +L A ++ D GR+ LH A V
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ--- 75
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
L+ + A +D TPL LAA + + L++ A
Sbjct: 76 -------------------ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116
Query: 343 SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
++A DD G+ +H AA N + A + L + + T +AA +GS +
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFLAAREGSYETAK 175
Query: 403 ELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
L+ + + P +A E H ++VR+L +
Sbjct: 176 VLLD---HFANRDITDH-MDRLPRDIAQERMHHDIVRLLDEYNL 215
Score = 117 bits (295), Expect = 4e-30
Identities = 55/244 (22%), Positives = 94/244 (38%), Gaps = 55/244 (22%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
ET LH+AAR + ++ A LL++ A N+ + G
Sbjct: 26 ETALHLAARY-----------------SRSDAAK----------RLLEASADANIQDNMG 58
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGG-DPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNI 129
+TP+HAA Q+L+ + D + G TPL LA+R +++ LI ++
Sbjct: 59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118
Query: 130 SQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQN 189
N+V++ G SALH+A V + +LL+ GA+ +Q
Sbjct: 119 ---------NAVDDLGKSALHWAAAVNNVD-----------AAVVLLKNGANKDMQNN-R 157
Query: 190 HETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTML 249
ET A G+ + +L+ + + P IA R H ++V +
Sbjct: 158 EETPLFLAAREGSYETAKVLLDH--FANR----DITDHMDRLPRDIAQERMHHDIVRLLD 211
Query: 250 NNHA 253
+
Sbjct: 212 EYNL 215
Score = 101 bits (254), Expect = 1e-24
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 39/186 (20%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
TPLH A D +L+++ A T++ AR+ DG L+ L+
Sbjct: 59 RTPLHAAVS-ADAQGVFQILIRNRA----TDLDARMHDG-TTPLILAARLAVEGMLEDLI 112
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
S A N D G++ +H AA N+ +LL++G + +N ETPL LA+R E
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 172
Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
+L+ N + + A + + V+LL E
Sbjct: 173 TAKVLLDHFANR---------DITDHMDRLPRDIAQE-----------RMHHDIVRLLDE 212
Query: 178 AGADVS 183
S
Sbjct: 213 YNLVRS 218
Score = 88.6 bits (221), Expect = 3e-20
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 16/136 (11%)
Query: 431 GGHANVVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGV 488
G V+ + GAS ++ ++TG TA+HLAA+ + + + + A + + +G
Sbjct: 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA-DANIQDNMGR 59
Query: 489 TALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENV 548
T LH A + L+ + A+ L G TPL LAA E +
Sbjct: 60 TPLHAAVSADAQGVFQILIRN-----------RATDLDA-RMHDGTTPLILAARLAVEGM 107
Query: 549 VRLLLNSAGVQVDAQT 564
+ L+ ++ V+A
Sbjct: 108 LEDLI-NSHADVNAVD 122
Score = 54.0 bits (131), Expect = 2e-08
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
++ LH AA V + D A++LLK+GA ++ N +AAR + A +LL A
Sbjct: 126 KSALHWAAAVNNVD-AAVVLLKNGANKDMQNNREETPLFLAAR-EGSYETAKVLLDHFAN 183
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLH 108
++T + P A + + ++LL E N + LH
Sbjct: 184 RDITDHMDRLPRDIAQERMHHDIVRLLDE-------YNLVRSPQLH 222
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 139 bits (351), Expect = 1e-37
Identities = 61/319 (19%), Positives = 97/319 (30%), Gaps = 67/319 (21%)
Query: 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLED-------GGDPMYK-NKIGETPLHLAS 111
AG + + A N L+ LL D +K + G+T L A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 112 RNCKA---EVVDLLIQFVQNISQEKVL--EYVNSVNEDGASALHYACQVTKAELIPITSK 166
N + + LL+ + K G +ALH A + +
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE-----------R 111
Query: 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
+ V LL+E GADV
Sbjct: 112 RNMTLVTLLVENGADVQAAAN--------------------------GDFFKKTKGRPGF 145
Query: 227 SIGWTPLLIACNRGHMELVNTMLNN---HARVDVFDQEGRSALHLAAEHGYLKVSSGKSL 283
G PL +A + +V +L N A + D G + LH E V + K +
Sbjct: 146 YFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205
Query: 284 KHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 343
+ I+ G +H + +I + TPL LAA +G++ V +L
Sbjct: 206 TSMY-------NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI- 257
Query: 344 IDATDDQGQKPIHVAAQNN 362
+ H AA ++
Sbjct: 258 ------HEPECRHAAAHHH 270
Score = 111 bits (278), Expect = 2e-27
Identities = 43/280 (15%), Positives = 78/280 (27%), Gaps = 71/280 (25%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDL-------GASIDATD-DQGQKPIHVA---AQNNFPEVA 367
+ + A Q + LL + D + G+ + A N +
Sbjct: 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73
Query: 368 QIFLR------AHPSLVTATTKD----GNTCAHIAAMQGSVGVIEELMK-------FDRS 410
+ L + V A+ D G T HIA + ++ ++ L++
Sbjct: 74 ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG 133
Query: 411 GVISARNRVTEA----TPLQLAAEGGHANVVRVLVKAGASCTD---ENKTGFTAVHLAAQ 463
PL LAA +V+ L++ D + G T +H +
Sbjct: 134 DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193
Query: 464 NGHNQV---LEEMRSSKALNVYSKKL-------------GVTALHVAAYFGQADTVRELL 507
N V + + KL G+T L +AA G+ + +L
Sbjct: 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
Query: 508 SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNEN 547
H AA+ + +
Sbjct: 254 QR-----------EI---------HEPECRHAAAHHHHHH 273
Score = 109 bits (274), Expect = 6e-27
Identities = 47/295 (15%), Positives = 90/295 (30%), Gaps = 60/295 (20%)
Query: 228 IGWTPLLIACNRGHMELVNTMLN-------NHARVDVFDQE-GRSALHLAAEHGYLKVSS 279
+ A + + + + ++L + D E G++ L A + +
Sbjct: 12 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNG--- 68
Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 339
+ L + +A+ D + QT LH+A E + + LL++
Sbjct: 69 -----QNDTIALLLDVARKTDSLKQFVNASYTDSYY-KGQTALHIAIERRNMTLVTLLVE 122
Query: 340 LGASIDATDD--------------QGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTK 383
GA + A + G+ P+ +AA N + + L+ P+ ++A
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
GNT H + + T + + L
Sbjct: 183 VGNTVLHALVEVA--------------------DNTVDNTKFVTSMYNEILILGAKLHPT 222
Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFG 498
N+ G T + LAA +G VL + + H AA+
Sbjct: 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHH 270
Score = 102 bits (256), Expect = 1e-24
Identities = 46/284 (16%), Positives = 85/284 (29%), Gaps = 79/284 (27%)
Query: 7 GKLRETPLHIAA-RVKDGD-RCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
+ +T L A + +G +LL + A
Sbjct: 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFV---------------NASYT 95
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK--------------IGETPLHLA 110
+ GQT +H A + N+ + LL+E+G D GE PL LA
Sbjct: 96 DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA 155
Query: 111 SRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQK 170
+ + +V L+ +++ + G + LH + A+ +K
Sbjct: 156 ACTNQLAIVKFLL------QNSWQPADISARDSVGNTVLHALVE--VADNTVDNTKFVTS 207
Query: 171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW 230
+L GA + ++ + N++ G
Sbjct: 208 MYNEILILGAKLH------------------------------PTLKLEEITNRK---GL 234
Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGY 274
TPL +A + G + ++ +L H AA H +
Sbjct: 235 TPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHH 271
Score = 89.5 bits (222), Expect = 4e-20
Identities = 34/207 (16%), Positives = 57/207 (27%), Gaps = 43/207 (20%)
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGV-----ISARNRVTEATPLQLA---AEGGHANV 436
A Q + +E L+ F + ++ T T L A G +
Sbjct: 13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72
Query: 437 VRVLVKAGA-----------SCTDENKTGFTAVHLAAQNGHNQVLE-------------- 471
+ +L+ S TD G TA+H+A + + ++
Sbjct: 73 IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132
Query: 472 EMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE 531
K G L +AA Q V+ LL + +D
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN--SWQPADI--------SARDS 182
Query: 532 SGMTPLHLAAYSGNENVVRLLLNSAGV 558
G T LH + V ++
Sbjct: 183 VGNTVLHALVEVADNTVDNTKFVTSMY 209
Score = 76.0 bits (187), Expect = 2e-15
Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 27/170 (15%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTD--------ENKTGFTAVHLA---AQNGHNQVLE 471
+ A + + L+ + +TG T + A NG N +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 472 EMRSSKALNVYSKKL-----------GVTALHVAAYFGQADTVRELLSHVPG---TVKSD 517
+ K+ G TALH+A V L+ + G ++
Sbjct: 75 LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN--GADVQAAAN 132
Query: 518 PPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
G G G PL LAA + +V+ LL ++ D +++
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182
Score = 37.5 bits (87), Expect = 0.009
Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 475 SSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM 534
S A + ++ A + LL + + K + E+G
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKR----LTDSEFKDP-ETGK 55
Query: 535 TPLHLA---AYSGNENVVRLLLNSAGVQVDA 562
T L A ++G + + LLL + D+
Sbjct: 56 TCLLKAMLNLHNGQNDTIALLL-DVARKTDS 85
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 135 bits (342), Expect = 1e-36
Identities = 51/284 (17%), Positives = 95/284 (33%), Gaps = 56/284 (19%)
Query: 70 GQTPVHAAAKYGNL-VTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
++P+ AAK ++ +LL +G + + +GET LH+A+ E +L++
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
+ E + S +G +ALH A ++ V+ LL GA VS +
Sbjct: 63 LVFE----PMTSELYEGQTALHIAVI-----------NQNVNLVRALLARGASVSARAT- 106
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
G+ + G PL A G E+V +
Sbjct: 107 --------------------------GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
+ + A + D G + LH+ + + ++ H
Sbjct: 141 IEHGADIRAQDSLGNTVLHILILQPNKTFA------------CQMYNLLLSYDGGDH-LK 187
Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ + + TP LA G + + + L+ I A
Sbjct: 188 SLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 135 bits (341), Expect = 1e-36
Identities = 46/216 (21%), Positives = 83/216 (38%), Gaps = 25/216 (11%)
Query: 319 QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA---- 373
++PL LAA+ +Q + KLL G + G+ +H+AA + E A + + A
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 374 HPSLVTATTKDGNTCAHIAAMQGSVGVIEELM----------KFDRSGVISARNRVTEAT 423
+T+ +G T HIA + +V ++ L+
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 424 PLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS-------- 475
PL AA G +VR+L++ GA ++ G T +H+ + +M +
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183
Query: 476 --SKALNVYSKKLGVTALHVAAYFGQADTVRELLSH 509
K+L + G+T +A G + L+
Sbjct: 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
Score = 116 bits (294), Expect = 5e-30
Identities = 53/265 (20%), Positives = 86/265 (32%), Gaps = 51/265 (19%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
E+PL +AA K+ D AL L L G + G
Sbjct: 4 ESPLLLAA--KENDVQALSKL------------------------LKFEGCEVHQRGAMG 37
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGD-----PMYKNKIGETPLHLASRNCKAEVVDLLIQF 125
+T +H AA Y NL +L+E + + G+T LH+A N +V L+
Sbjct: 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Query: 126 VQNIS----QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGAD 181
++S +++ G L +A V E V+LL+E GAD
Sbjct: 98 GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE-----------IVRLLIEHGAD 146
Query: 182 VSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM--SGTEIS--KALNKQTSIGWTPLLIAC 237
+ Q T H + N M + + G TP +A
Sbjct: 147 IRAQDS-LGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205
Query: 238 NRGHMELVNTMLNNHARVDVFDQEG 262
G++ + ++ +
Sbjct: 206 VEGNIVMFQHLMQKRKHIAAAHHHH 230
Score = 113 bits (285), Expect = 8e-29
Identities = 47/238 (19%), Positives = 81/238 (34%), Gaps = 37/238 (15%)
Query: 351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 410
+ P+ +AA+ N + L+ V G T HIAA+ ++ LM+
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 411 GVISARNRVTEA--TPLQLAAEGGHANVVRVLVKAGA-------------SCTDENKTGF 455
V T L +A + N+VR L+ GA + G
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 456 TAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRE----LLSHV 510
+ AA G +++ + A ++ ++ LG T LH+ + LLS+
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGA-DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY- 180
Query: 511 PGTVKSDPPTGAS----FLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
L + + G+TP LA GN + + L+ + A
Sbjct: 181 ----------DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM-QKRKHIAAAH 227
Score = 110 bits (278), Expect = 7e-28
Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 50/244 (20%)
Query: 228 IGWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHS 286
I +PLL+A ++ ++ +L V G +ALH+AA + L+ +
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAM------- 54
Query: 287 VMSFRLPPHNIIPNGFLVHDHAAVIDILTL-----RKQTPLHLAAEAGQLQVCKLLLDLG 341
L+ + A + + QT LH+A + + + LL G
Sbjct: 55 ---------------VLM-EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 342 ASIDATDD-------------QGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTC 388
AS+ A G+ P+ AA E+ ++ + H + + A GNT
Sbjct: 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI-EHGADIRAQDSLGNTV 157
Query: 389 AHIAAMQGSVGVIEELMKF--DRSGVISARNRVTEA-----TPLQLAAEGGHANVVRVLV 441
HI +Q + ++ G ++ TP +LA G+ + + L+
Sbjct: 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Query: 442 KAGA 445
+
Sbjct: 218 QKRK 221
Score = 88.4 bits (220), Expect = 4e-20
Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 32/184 (17%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
+T LHIA LL GA +++AR P+ G
Sbjct: 76 QTALHIAVI-NQNVNLVRALLARGA-----SVSARATGS--------VFHYRPHNLIYYG 121
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV----DLLIQFV 126
+ P+ AA G+ ++LL+E G D ++ +G T LH+ +LL+ +
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181
Query: 127 QNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQT 186
K LE N G + A + + + L++ ++
Sbjct: 182 GGD-HLKSLE--LVPNNQGLTPFKLAGV-----------EGNIVMFQHLMQKRKHIAAAH 227
Query: 187 KQNH 190
+H
Sbjct: 228 HHHH 231
Score = 49.9 bits (120), Expect = 5e-07
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 15/80 (18%)
Query: 486 LGVTALHVAAYFGQADTVRELL-SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544
+ + L +AA + +LL G G T LH+AA
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFE-----------GCEV--HQRGAMGETALHIAALYD 48
Query: 545 NENVVRLLLNSAGVQVDAQT 564
N +L+ A ++ +
Sbjct: 49 NLEAAMVLM-EAAPELVFEP 67
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 130 bits (329), Expect = 6e-35
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 20/242 (8%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
+LA ++ + +L + TD + +H A E+ + FL V
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVE-FLLQLGVPVN 67
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
G + HIAA G +++ L+ + ++A N+ TPL AA + +
Sbjct: 68 DKDDAGWSPLHIAASAGXDEIVKALL--VKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVM 124
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQ 499
L++ GA+ ++ TA+H AA G+ +++ + KA G T LH+A +
Sbjct: 125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 559
+ + L++ GAS + ++ TPL +A G ++ L + G +
Sbjct: 185 VEEAKFLVTQ-----------GASI--YIENKEEKTPLQVAK--GGLGLILKRL-AEGEE 228
Query: 560 VD 561
Sbjct: 229 AS 230
Score = 127 bits (320), Expect = 1e-33
Identities = 52/248 (20%), Positives = 94/248 (37%), Gaps = 29/248 (11%)
Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
+LA ++ ++ ++ +T
Sbjct: 7 NIMICNLAYSGKLDELKE----------------------RIL-ADKSLATRTDQDSRTA 43
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
LH A AG ++ + LL LG ++ DD G P+H+AA E+ + L + V A
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAV 102
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 441
++G T H AA + + L+ + A++ +AT + AA G+ +V +L+
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLL--EGGANPDAKDH-YDATAMHRAAAKGNLKMVHILL 159
Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQAD 501
AS ++ G T +HLA + + + + A K T L VA G
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLG 217
Query: 502 TVRELLSH 509
+ + L+
Sbjct: 218 LILKRLAE 225
Score = 125 bits (315), Expect = 4e-33
Identities = 55/278 (19%), Positives = 96/278 (34%), Gaps = 52/278 (18%)
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127
+ A + +L D ++ T LH A E+V+ L+Q
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
+ N ++ G S LH A + VK LL GA V+ +
Sbjct: 65 PV---------NDKDDAGWSPLHIAAS-----------AGXDEIVKALLVKGAHVNAVNQ 104
Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
N T HY A +++ +LE + + + T + A +G++++V+
Sbjct: 105 -NGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307
+L A ++ D EG + LHLA + ++ + +
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAK-----------------------FLVTQ 194
Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASID 345
A I I ++TPL +A G L + L G
Sbjct: 195 GASIYIENKEEKTPLQVA--KGGLGLILKRLAEGEEAS 230
Score = 118 bits (298), Expect = 9e-31
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 27/218 (12%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+L + T D +T +H A G+ ++ LL+ G K+ G +PLH+A+
Sbjct: 25 RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
E+V L+ ++ N+VN++G + LHYA K + +
Sbjct: 85 XDEIVKALLVKGAHV---------NAVNQNGCTPLHYAAS-----------KNRHEIAVM 124
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
LLE GA+ + TA H A GN ++ +L + N Q + G TPL
Sbjct: 125 LLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFY------KASTNIQDTEGNTPLH 177
Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 272
+AC+ +E ++ A + + ++E ++ L +A
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 118 bits (297), Expect = 1e-30
Identities = 56/275 (20%), Positives = 99/275 (36%), Gaps = 52/275 (18%)
Query: 97 MYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVT 156
M +LA E+ + ++ ++D +ALH+AC
Sbjct: 1 MEGCVSNIMICNLAYSGKLDELKERILADKSLA---------TRTDQDSRTALHWACS-- 49
Query: 157 KAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGT 216
+ V+ LL+ G V+ + + H A AG ++++ +L +
Sbjct: 50 ---------AGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAGXDEIVKALLVK---- 95
Query: 217 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLK 276
+N G TPL A ++ E+ +L A D D +A+H AA G LK
Sbjct: 96 --GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 277 VSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKL 336
+ ++ + A +I TPLHLA + +++ K
Sbjct: 154 MVH-----------------------ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 337 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
L+ GASI + + + P+ VA + L
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAKGGL--GLILKRL 223
Score = 113 bits (284), Expect = 9e-29
Identities = 58/259 (22%), Positives = 99/259 (38%), Gaps = 39/259 (15%)
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISK--ALNKQTSIGWTPLLIACNRGHMELVN 246
++ + A +G D L + ++ + T L AC+ GH E+V
Sbjct: 6 SNIMICNL-AYSGKLDELKERI-------LADKSLATRTDQDSRTALHWACSAGHTEIVE 57
Query: 247 TMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHD 306
+L V+ D G S LH+AA G ++ +
Sbjct: 58 FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVK-----------------------ALLV 94
Query: 307 HAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEV 366
A ++ + TPLH AA + ++ +LL+ GA+ DA D +H AA ++
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM 154
Query: 367 AQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQ 426
I L + + +GNT H+A + V + L+ + I N+ E TPLQ
Sbjct: 155 VHILL-FYKASTNIQDTEGNTPLHLACDEERVEEAKFLV--TQGASIYIENK-EEKTPLQ 210
Query: 427 LAAEGGHANVVRVLVKAGA 445
+A G ++ + G
Sbjct: 211 VAK--GGLGLILKRLAEGE 227
Score = 91.1 bits (226), Expect = 6e-21
Identities = 51/247 (20%), Positives = 83/247 (33%), Gaps = 56/247 (22%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
T LH A T I LL+ G N D G
Sbjct: 41 RTALHWACSA-----------------GHTEIVE----------FLLQLGVPVNDKDDAG 73
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNIS 130
+P+H AA G ++ LL G N+ G TPLH A+ + E+ +L++ N
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP- 132
Query: 131 QEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNH 190
++ + A+A+H A K + K V +LL A ++Q
Sbjct: 133 --------DAKDHYDATAMHRAAA-----------KGNLKMVHILLFYKASTNIQDT-EG 172
Query: 191 ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLN 250
T H + ++ Q ++ + TPL +A +G + L+ L
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQ------GASIYIENKEEKTPLQVA--KGGLGLILKRLA 224
Query: 251 NHARVDV 257
+
Sbjct: 225 EGEEASM 231
Score = 85.7 bits (212), Expect = 3e-19
Identities = 44/217 (20%), Positives = 71/217 (32%), Gaps = 51/217 (23%)
Query: 351 GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRS 410
++A E+ + L A SL T T +D T
Sbjct: 7 NIMICNLAYSGKLDELKERIL-ADKSLATRTDQDSRT----------------------- 42
Query: 411 GVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVL 470
L A GH +V L++ G D++ G++ +H+AA G ++++
Sbjct: 43 -------------ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIV 89
Query: 471 EEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGS 530
+ + A + G T LH AA + + LL D
Sbjct: 90 KALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD------------- 136
Query: 531 ESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
T +H AA GN +V +LL + Q E
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILL-FYKASTNIQDTEG 172
Score = 64.1 bits (156), Expect = 9e-12
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
+ +LA +++ E + + K+ + TALH A G + V LL
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQL 62
Query: 510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
G ++G +PLH+AA +G + +V+ LL G V+A Q
Sbjct: 63 -----------GVPV--NDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNG 106
Score = 35.6 bits (82), Expect = 0.025
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 529 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
G S + +LA + + +L + Q++
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERIL-ADKSLATRTDQDS 40
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 129 bits (327), Expect = 2e-34
Identities = 57/319 (17%), Positives = 91/319 (28%), Gaps = 94/319 (29%)
Query: 70 GQTPVHAAAKYGNLVTLQLLLE--------DGGDPMYKNKIGETPLHLASRNCK---AEV 118
+ + + G L LLE + G+T L A N +
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 119 VDLLIQFVQNISQEKVL--EYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
+ L+Q ++ K L G SALH A + K + VKLL+
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIE-----------KRSLQCVKLLV 110
Query: 177 EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIA 236
E GADV L+ G K G PL +A
Sbjct: 111 ENGADVHLRAC---------------------------GRFFQKHQGTCFYFGELPLSLA 143
Query: 237 CNRGHMELVNTMLNNH---ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLP 293
++V +L N A ++ D G + LH
Sbjct: 144 ACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS----------------- 186
Query: 294 PHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQK 353
+ + L + G LQ+ L + ++ QG
Sbjct: 187 -----------------------PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLT 223
Query: 354 PIHVAAQNNFPEVAQIFLR 372
P+ +AA+ E+ + L+
Sbjct: 224 PLKLAAKEGKIEIFRHILQ 242
Score = 112 bits (281), Expect = 4e-28
Identities = 48/289 (16%), Positives = 77/289 (26%), Gaps = 59/289 (20%)
Query: 231 TPLLIACNRGHMELVNTMLNNHAR--------VDVFDQEGRSALHLAAEHGYLKVSSGKS 282
L +RG E + +L G++ L A +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQ-------- 55
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
+G A + + LH+A E LQ KLL++ GA
Sbjct: 56 -DGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114
Query: 343 SIDATDD-------------QGQKPIHVAAQNNFPEVAQIFLRAHPSL--VTATTKDGNT 387
+ G+ P+ +AA +V L + AT GNT
Sbjct: 115 DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT 174
Query: 388 CAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASC 447
H M + E + L + G + L
Sbjct: 175 VLHALVMIA--------------------DNSPENSALVIHMYDGLLQMGARLCPTVQLE 214
Query: 448 TDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY 496
N G T + LAA+ G ++ + + G A H +
Sbjct: 215 EISNHQGLTPLKLAAKEGKIEIFRHILQREF-------SGAAAHHHHHH 256
Score = 109 bits (275), Expect = 3e-27
Identities = 42/253 (16%), Positives = 64/253 (25%), Gaps = 71/253 (28%)
Query: 319 QTPLHLAA---EAGQLQVCKLLLDLG-----------ASIDATDDQGQKPIHVAAQNNFP 364
+T L A + G LL + A QG +H+A +
Sbjct: 44 KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103
Query: 365 EVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATP 424
+ ++ + V H F P
Sbjct: 104 QCVKLLVENGAD-VHLRACGRFFQKHQGTC----------FYFGE-------------LP 139
Query: 425 LQLAAEGGHANVVRVLVKAGASCTD---ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
L LAA +VV L++ + G T +H N
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN-------------- 185
Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+AL + Y G L E+ + G+TPL LAA
Sbjct: 186 ---SPENSALVIHMYDGLLQMGARLCPT-----------VQLE--EISNHQGLTPLKLAA 229
Query: 542 YSGNENVVRLLLN 554
G + R +L
Sbjct: 230 KEGKIEIFRHILQ 242
Score = 90.6 bits (225), Expect = 1e-20
Identities = 42/270 (15%), Positives = 73/270 (27%), Gaps = 81/270 (30%)
Query: 7 GKLRETPLHIAA-RVKDGD-RCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
G +T L A ++DG C + LL+ A
Sbjct: 40 GSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL---------------VNAQCT 84
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGD-------------PMYKNKIGETPLHLAS 111
G + +H A + +L ++LL+E+G D GE PL LA+
Sbjct: 85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAA 144
Query: 112 RNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAE-----LIPITSK 166
+ +VV L++ + + + + G + LH + L+
Sbjct: 145 CTKQWDVVTYLLENPHQPAS------LEATDSLGNTVLHALVMIADNSPENSALVIHMYD 198
Query: 167 EDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
+ L + Q
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQ-------------------------------------- 220
Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVD 256
G TPL +A G +E+ +L
Sbjct: 221 --GLTPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 77.5 bits (191), Expect = 4e-16
Identities = 36/230 (15%), Positives = 59/230 (25%), Gaps = 59/230 (25%)
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA-----TPLQLAA---EGGHANV 436
+G + L+++ R + T L A + G
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 437 VRVLVKAG-----------ASCTDENKTGFTAVHLAAQNGHNQVLE-------------E 472
+ L++ A CTDE G +A+H+A + Q ++
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 473 MRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSES 532
R + G L +AA Q D V LL + + E
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN--PHQPASL--------EATDSL 171
Query: 533 GMTPLHL----------------AAYSGNENVVRLLLNSAGVQVDAQTQE 566
G T LH Y G + L + +
Sbjct: 172 GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLC-PTVQLEEISNHQ 220
Score = 71.7 bits (176), Expect = 3e-14
Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 26/169 (15%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTD--------ENKTGFTAVHLAA---QNGHNQVLE 471
L G + L++ + E TG T + A Q+G N +
Sbjct: 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63
Query: 472 EMRSSKALNVYSKKL-----------GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
+ + K L G +ALH+A V+ L+ + G
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADVHLRAC 121
Query: 521 GASFLGELGSES--GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQEN 567
G F G+ G PL LAA + +VV LL + + ++
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS 170
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 127 bits (322), Expect = 3e-34
Identities = 42/242 (17%), Positives = 80/242 (33%), Gaps = 57/242 (23%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
L A + +V ++L D +D D +G P+++A NN E+A+ L + +
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAK-ALIDRGADI 65
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
+ +P A G ++
Sbjct: 66 NLQNSISD------------------------------------SPYLYAGAQGRTEILA 89
Query: 439 VLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAY 496
++K ++ N+ G A+ AA+ GH ++ + ++ + G TAL A
Sbjct: 90 YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149
Query: 497 F-----GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRL 551
D V+ L+ + GA + SG T + A G + ++
Sbjct: 150 LREGNQLYQDIVKLLMEN-----------GADQ--SIKDNSGRTAMDYANQKGYTEISKI 196
Query: 552 LL 553
L
Sbjct: 197 LA 198
Score = 123 bits (311), Expect = 1e-32
Identities = 52/279 (18%), Positives = 91/279 (32%), Gaps = 88/279 (31%)
Query: 99 KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
K L A++ +V ++L + + V+ +G + L+ A
Sbjct: 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV---------DEVDTEGNTPLNIAVH---- 48
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
D + K L++ GAD+
Sbjct: 49 -------NNDIEIAKALIDRGADI------------------------------------ 65
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHAR-VDVFDQEGRSALHLAAEHGYLKV 277
N Q SI +P L A +G E++ ML + ++ ++ G +AL AAE G++
Sbjct: 66 ----NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDN 121
Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAA-----EAGQLQ 332
K L + +G ID T L A
Sbjct: 122 V--KLL--------------LEDG------REDIDFQNDFGYTALIEAVGLREGNQLYQD 159
Query: 333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
+ KLL++ GA D+ G+ + A Q + E+++I
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 118 bits (299), Expect = 5e-31
Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 34/220 (15%)
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
E + L A + KV L D +D +
Sbjct: 3 TYEVGALLEAANQRDTKKVKE----------------------ILQ-DTTYQVDEVDTEG 39
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
TPL++A +++ K L+D GA I+ + P A E+ L+ +
Sbjct: 40 NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL 99
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV--ISARNRVTEATPLQLAA-----EG 431
+ G AA +G + ++ L++ G I +N T L A
Sbjct: 100 NKHNRYGGNALIPAAEKGHIDNVKLLLE---DGREDIDFQND-FGYTALIEAVGLREGNQ 155
Query: 432 GHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
+ ++V++L++ GA + ++ +G TA+ A Q G+ ++ +
Sbjct: 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195
Score = 114 bits (289), Expect = 1e-29
Identities = 43/228 (18%), Positives = 82/228 (35%), Gaps = 65/228 (28%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
L + + +G TP++ A ++ + L++ G D +N I ++P A +
Sbjct: 25 LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGR 84
Query: 116 AEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLL 175
E++ ++ + +N N G +AL A + + VKLL
Sbjct: 85 TEILAYML--------KHATPDLNKHNRYGGNALIPAAEKGHID-----------NVKLL 125
Query: 176 LEAG-ADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
LE G D+ + Q G+T L+
Sbjct: 126 LEDGREDI----------------------------------------DFQNDFGYTALI 145
Query: 235 IAC-----NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
A N+ + ++V ++ N A + D GR+A+ A + GY ++
Sbjct: 146 EAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193
Score = 97.5 bits (244), Expect = 2e-23
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
L+ A + V +L + + G T +++A N ++ + + A ++
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGA-DIN 66
Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+ + + A G+ + + +L H L + G L AA
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKH-----------ATPDL-NKHNRYGGNALIPAA 114
Query: 542 YSGNENVVRLLLNSAGVQVDAQ 563
G+ + V+LLL +D Q
Sbjct: 115 EKGHIDNVKLLLEDGREDIDFQ 136
Score = 78.3 bits (194), Expect = 8e-17
Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 59/193 (30%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
TPL+IA K L+ GA +I + D +
Sbjct: 40 NTPLNIAVHNNDIEIAK-------ALIDRGA-----DINLQNSISDS-PYLYAGAQGRTE 86
Query: 56 ----LLKSGAG-PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGG-DPMYKNKIGETPLHL 109
+LK N G + AA+ G++ ++LLLEDG D ++N G T L
Sbjct: 87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146
Query: 110 A-----SRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPIT 164
A ++V LL++ + + + G +A+ YA Q
Sbjct: 147 AVGLREGNQLYQDIVKLLMENGADQ---------SIKDNSGRTAMDYANQ---------- 187
Query: 165 SKEDQKTVKLLLE 177
K + K+L +
Sbjct: 188 -KGYTEISKILAQ 199
Score = 74.4 bits (184), Expect = 2e-15
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 15/114 (13%)
Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
+ A Q +V E ++ + V G T L++A + + + L+
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTY-QVDEVDTEGNTPLNIAVHNNDIEIAKALIDR 61
Query: 510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
GA L + +P A G ++ +L A ++
Sbjct: 62 -----------GADI--NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH 102
Score = 42.4 bits (101), Expect = 1e-04
Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 22/84 (26%)
Query: 8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
T L A +++G++ ++K +L+++GA ++
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVK----------------------LLMENGADQSIKD 175
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLE 91
+ G+T + A + G ++L +
Sbjct: 176 NSGRTAMDYANQKGYTEISKILAQ 199
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 124 bits (313), Expect = 2e-33
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+H A G++ ++ I+ TD++G P+ AA + V + L + +
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL-QNGADP 62
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
K + +A +G +++ L+ GV ++ + TPL A G H V
Sbjct: 63 QLLGKGRESALSLACSKGYTDIVKMLLD---CGVDVNEYDW-NGGTPLLYAVHGNHVKCV 118
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
++L+++GA T E +G+ ++ LA G+ V +
Sbjct: 119 KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 152
Score = 119 bits (300), Expect = 2e-31
Identities = 37/176 (21%), Positives = 63/176 (35%), Gaps = 24/176 (13%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
+ +G M + T + ++ D+EG + L AA HG + V
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVE--------- 53
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
FL+ + A +L +++ L LA G + K+LLD G ++ D
Sbjct: 54 -------------FLL-QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
G P+ A N + + L + T T G +A G V + +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVK-MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154
Score = 118 bits (298), Expect = 2e-31
Identities = 44/209 (21%), Positives = 71/209 (33%), Gaps = 60/209 (28%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
VH A G ++ L +E + ++ G TPL A+ + + VV+ L+Q +
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
+ + SAL AC + VK+LL+ G DV
Sbjct: 62 P---------QLLGKGRESALSLACSKGYTD-----------IVKMLLDCGVDV------ 95
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
N+ G TPLL A + H++ V +
Sbjct: 96 ----------------------------------NEYDWNGGTPLLYAVHGNHVKCVKML 121
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
L + A + G +++ LA GY V
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSV 150
Score = 115 bits (292), Expect = 2e-30
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 19/184 (10%)
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
+ H A QG + + + ++ VI+ + TPL AA G VV L++
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRI--EQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQN 58
Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQADT 502
GA K +A+ LA G+ +++ + +N Y G T L A +
Sbjct: 59 GADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN-GGTPLLYAVHGNHVKC 117
Query: 503 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
V+ LL GA + ++SG + LA G +V +++ S +++
Sbjct: 118 VKMLLES-----------GADP--TIETDSGYNSMDLAVALGYRSVQQVIE-SHLLKLLQ 163
Query: 563 QTQE 566
+E
Sbjct: 164 NIKE 167
Score = 109 bits (274), Expect = 5e-28
Identities = 43/196 (21%), Positives = 69/196 (35%), Gaps = 30/196 (15%)
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
+ + H A G L +EQ I N G+TPL+ A G + +V +
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQ--ENVI----NHTDEEGFTPLMWAAAHGQIAVVEFL 55
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
L N A + + SAL LA GY + L+ D
Sbjct: 56 LQNGADPQLLGKGRESALSLACSKGYTDIVK----------------------MLL-DCG 92
Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 368
++ TPL A ++ K+LL+ GA D G + +A + V Q
Sbjct: 93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 152
Query: 369 IFLRAHPSLVTATTKD 384
+ + +H + K+
Sbjct: 153 V-IESHLLKLLQNIKE 167
Score = 108 bits (273), Expect = 7e-28
Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 60/207 (28%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
++ N T ++G TP+ AA +G + ++ LL++G DP K E+ L LA
Sbjct: 21 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
++V +L+ + VN + +G + L YA + VK+
Sbjct: 81 YTDIVKMLLDCGVD---------VNEYDWNGGTPLLYAVHGNHVK-----------CVKM 120
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
LLE+GAD +T G+ +
Sbjct: 121 LLESGADP----------------------------------------TIETDSGYNSMD 140
Query: 235 IACNRGHMELVNTMLNNHARVDVFDQE 261
+A G+ + + ++ ++ +E
Sbjct: 141 LAVALGYRSVQQVIESHLLKLLQNIKE 167
Score = 85.1 bits (212), Expect = 1e-19
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 22/126 (17%)
Query: 12 TPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLL 57
TPL AA V+ LL++GA P L +A K MLL
Sbjct: 38 TPLMWAAAHGQIAVVE-------FLLQNGADPQLLGKGRESALSLACS-KGYTDIVKMLL 89
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
G N +G TP+ A ++ +++LLE G DP + G + LA
Sbjct: 90 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRS 149
Query: 118 VVDLLI 123
V ++
Sbjct: 150 VQQVIE 155
Score = 57.0 bits (139), Expect = 8e-10
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
E+ L +A K MLL G N + A + +C MLL+SGA
Sbjct: 70 ESALSLACS-KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH-GNHVKCVKMLLESGAD 127
Query: 63 PNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
P + TD G + A G Q++ + K
Sbjct: 128 PTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 126 bits (318), Expect = 3e-33
Identities = 50/323 (15%), Positives = 80/323 (24%), Gaps = 91/323 (28%)
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
++ G LI GH A DV E + AA + S
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DV-VSEYETPWWTAARKADEQALS--- 62
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
L+ D +D + +T L A G + +LL + GA
Sbjct: 63 -------------------QLLED--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101
Query: 343 SIDATDDQ-GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVI 401
+D D + G +H+AA PEV + + + + + G T
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLT-------------- 146
Query: 402 EELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLA 461
L+LA E ++ G V
Sbjct: 147 ----------------------ALELAREILKTTPKGNPMQFGR---RIGLEKVINVLEG 181
Query: 462 AQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTG 521
+ +V E + + G ++ + D HV V D
Sbjct: 182 QVFEYAEVDE-------IVE-KRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD---- 229
Query: 522 ASFLGELGSESGMTPLHLAAYSG 544
L A
Sbjct: 230 -----------YEDGLEYAVAES 241
Score = 126 bits (318), Expect = 3e-33
Identities = 51/306 (16%), Positives = 93/306 (30%), Gaps = 80/306 (26%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
+ T +G K G+ + D ETP A+R + + L+
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLL 65
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
+ V++V+E+G +AL + + + V+LL EAGAD+
Sbjct: 66 EDRD----------VDAVDENGRTALLFVAGLGSDK-----------CVRLLAEAGADLD 104
Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
+ + G T L +A E
Sbjct: 105 HRDMRG---------------------------------------GLTALHMAAGYVRPE 125
Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV-----SSGKSLKHSVMSFRLPPHNII 298
+V ++ A ++V D+ G +AL LA E G+ + + L
Sbjct: 126 VVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV-- 183
Query: 299 PNGFLVHDHAAVIDILTLRK--QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIH 356
++A V +I+ R + +L + A A D + +
Sbjct: 184 ------FEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYED--GLE 235
Query: 357 VAAQNN 362
A +
Sbjct: 236 YAVAES 241
Score = 122 bits (308), Expect = 8e-32
Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 33/237 (13%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+ + G + A + + + + P AA+ + L V
Sbjct: 16 AMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL--EDRDV 70
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
A ++G T A GS + L + +G + R+ T L +AA VV
Sbjct: 71 DAVDENGRTALLFVAGLGSDKCVRLLAE---AGADLDHRDMRGGLTALHMAAGYVRPEVV 127
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYF 497
LV+ GA E++ G TA+ LA + + +K V + F
Sbjct: 128 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGR-RIGLEK--VINVLEGQVF 184
Query: 498 GQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
A+ + G +L + + +
Sbjct: 185 EYAEVDEIVEKR---------------------GKGKDVEYLVRWKDGGDCEWVKGV 220
Score = 111 bits (280), Expect = 5e-28
Identities = 51/368 (13%), Positives = 88/368 (23%), Gaps = 130/368 (35%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
GE + SR +GA + +
Sbjct: 1 GEVNKIIGSRT----------------------------AGEGAMEYLIEWKDGHSPS-- 30
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
ADV ++
Sbjct: 31 ---------WVPSSYIAADV-------------------VSE------------------ 44
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
TP A + + ++ +L VD D+ GR+AL A G K
Sbjct: 45 ------YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVR--- 94
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLR-KQTPLHLAAEAGQLQVCKLLLDLG 341
L + A +D +R T LH+AA + +V + L++LG
Sbjct: 95 -------------------LLA-EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 134
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AHPSLVTATTKDGNTCAHIAAMQGSVG 399
A I+ D++G + +A + ++ L + +
Sbjct: 135 ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL------EKVINVLEGQVFEYAE 188
Query: 400 VIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN-KTGFTAV 458
V E + K G L + V A ++ K +
Sbjct: 189 VDEIVEK-RGKGK----------DVEYLVRWKDGGDCEWVKGVHVA---EDVAKDYEDGL 234
Query: 459 HLAAQNGH 466
A
Sbjct: 235 EYAVAESV 242
Score = 98.4 bits (246), Expect = 2e-23
Identities = 35/153 (22%), Positives = 51/153 (33%), Gaps = 19/153 (12%)
Query: 413 ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEE 472
I +R A + + GH+ A D T AA+ Q L +
Sbjct: 7 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA---DVVSEYETPWWTAARKADEQALSQ 63
Query: 473 MRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSE 531
+ +V + + G TAL A G VR L GA L
Sbjct: 64 L-LEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEA-----------GAD-LDHRDMR 109
Query: 532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
G+T LH+AA VV L+ G ++ +
Sbjct: 110 GGLTALHMAAGYVRPEVVEALV-ELGADIEVED 141
Score = 96.9 bits (242), Expect = 6e-23
Identities = 43/213 (20%), Positives = 68/213 (31%), Gaps = 39/213 (18%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
ETP AAR D AL L + + A D+C +L ++GA
Sbjct: 46 ETPWWTAAR--KADEQALSQLLEDRDVDAVDENGRTALLFVAG-LGSDKCVRLLAEAGAD 102
Query: 63 PNLT-TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
+ G T +H AA Y ++ L+E G D +++ G T L LA K
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGN 162
Query: 122 LIQFVQNISQEKVLEY-------------VNSVNEDGASALHYACQVTKAELIPITSKED 168
+QF + I EKV+ + G + K+
Sbjct: 163 PMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLV-----------RWKDG 211
Query: 169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAG 201
+ A+ +++E Y
Sbjct: 212 GDCEWVKGVHVAED---VAKDYEDGLEYAVAES 241
Score = 47.2 bits (113), Expect = 5e-06
Identities = 11/105 (10%), Positives = 19/105 (18%), Gaps = 35/105 (33%)
Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 513
G + ++ G + G + +
Sbjct: 1 GEVNKIIGSRTAGE-------------------GAMEYLIEWKDGHSPSWVPSSYI---- 37
Query: 514 VKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558
TP AA +E + LL V
Sbjct: 38 ------------AADVVSEYETPWWTAARKADEQALSQLLEDRDV 70
Score = 31.4 bits (72), Expect = 0.55
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQ 71
+ + ++ K G G ++ + KDG C + A D +
Sbjct: 176 INVLEGQV-FEYAEVDEIVEKRGKGKDVEYLVRW-KDGGDCEWVKGVHVA--EDVAKDYE 231
Query: 72 TPVHAAAKYGNL 83
+ A +
Sbjct: 232 DGLEYAVAESVI 243
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 126 bits (318), Expect = 2e-32
Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 18/225 (8%)
Query: 53 ALMLLKSGAGPNLTTD-DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA- 110
+ N+ D G TP+H NL ++ L++ G + +Y + +GE+ L A
Sbjct: 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAV 172
Query: 111 -SRNC--KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKE 167
S N LL + + + LH+ + +K
Sbjct: 173 KSVNNYDSGTFEALLDYLYPCL---------ILEDSMNRTILHHIIITSGMTGCSAAAKY 223
Query: 168 DQKT-VKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQT 226
+ +++ E+ + + +L + I+ LN Q
Sbjct: 224 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD---LKWIIANMLNAQD 280
Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAE 271
S G T L IA G++ +V+ +L+ A + ++ G + A
Sbjct: 281 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
Score = 103 bits (259), Expect = 1e-24
Identities = 47/306 (15%), Positives = 88/306 (28%), Gaps = 34/306 (11%)
Query: 59 SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS-RNCKAE 117
N + + L D + + S + E
Sbjct: 52 PVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE 111
Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
V D N++ V+E G + LH+ S + + VK L++
Sbjct: 112 VNDAFPNTQLNLNI--------PVDEHGNTPLHWLT-----------SIANLELVKHLVK 152
Query: 178 AGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC 237
G++ E+ + NN + + L + S+ T L
Sbjct: 153 HGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLD--YLYPCLILEDSMNRTILHHII 209
Query: 238 NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSV--MSFRLPPH 295
M + + + + + + SG + K S
Sbjct: 210 ITSGMTGCSAAAKYYLDI---------LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260
Query: 296 NIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPI 355
+I+ N L A +++ T L++AA G + + LLD GA + G +P+
Sbjct: 261 SILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPV 320
Query: 356 HVAAQN 361
A
Sbjct: 321 DFGAGL 326
Score = 99.3 bits (247), Expect = 5e-23
Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 44/230 (19%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF---LRAHP 375
TPLH L++ K L+ G++ D+ G+ + A ++ + F L
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191
Query: 376 SLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHAN 435
+ T H + + T AA+
Sbjct: 192 PCLILEDSMNRTILHHIIITSGM------------------------TGCSAAAKYYLDI 227
Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL---NVYSK-KLGVTAL 491
++ +VK + + E K + + ++ G T L
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287
Query: 492 HVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
++AA G V LL + GA + ++SG+ P+ A
Sbjct: 288 NIAARLGNISIVDALLDY-----------GADP--FIANKSGLRPVDFGA 324
Score = 88.9 bits (220), Expect = 2e-19
Identities = 45/346 (13%), Positives = 98/346 (28%), Gaps = 50/346 (14%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
+ D +L K +K L + + + K E
Sbjct: 12 NENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDN-EQKMKLEAFLQRL 70
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL-IACNRGHMELVNTMLNNHARVD 256
++ T + S N + ++ + E+ + N ++
Sbjct: 71 LFPEIQEMPTSLNND------SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 124
Query: 257 V-FDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
+ D+ G + LH L++ LV H +
Sbjct: 125 IPVDEHGNTPLHWLTSIANLELVK----------------------HLV-KHGSNRLYGD 161
Query: 316 LRKQTPLHLAAEAG----QLQVCKLLLDLGASIDATDDQGQKPIHVAAQNN--------- 362
++ L A ++ LL L + D + +H +
Sbjct: 162 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 221
Query: 363 --FPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELM--KFDRSGVISARNR 418
+ ++ ++ + + + I E + K+ + +++A++
Sbjct: 222 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 281
Query: 419 VTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQN 464
T L +AA G+ ++V L+ GA NK+G V A
Sbjct: 282 -NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
Score = 81.6 bits (201), Expect = 4e-17
Identities = 37/263 (14%), Positives = 79/263 (30%), Gaps = 32/263 (12%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATD-DQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
+ L ++ L + ++ ++ Q+ HV+ + EV F +L
Sbjct: 64 EAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 123
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHA-- 434
+ GNT H ++ +++ L+K G + + L A + +
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHLVKH---GSNRLYGDN-MGESCLVKAVKSVNNYD 179
Query: 435 -NVVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHN------------QVLEEMRSSKALN 480
L+ C + T +H ++ + +
Sbjct: 180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239
Query: 481 VYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 540
+ S + + D++ E L + + +G T L++A
Sbjct: 240 IQSGTNEKESKPNDKNGERKDSILENLDL---------KWIIANMLNAQDSNGDTCLNIA 290
Query: 541 AYSGNENVVRLLLNSAGVQVDAQ 563
A GN ++V LL G
Sbjct: 291 ARLGNISIVDALL-DYGADPFIA 312
Score = 46.6 bits (110), Expect = 1e-05
Identities = 14/115 (12%), Positives = 29/115 (25%), Gaps = 12/115 (10%)
Query: 449 DENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLS 508
++ + ++ + + + ++ V +
Sbjct: 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF- 116
Query: 509 HVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
P T + L E G TPLH N +V+ L+ G
Sbjct: 117 ---------PNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYG 160
Score = 33.8 bits (77), Expect = 0.13
Identities = 15/68 (22%), Positives = 18/68 (26%), Gaps = 27/68 (39%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
+T L+IAAR LL GA P + G
Sbjct: 284 DTCLNIAAR---------------------------LGNISIVDALLDYGADPFIANKSG 316
Query: 71 QTPVHAAA 78
PV A
Sbjct: 317 LRPVDFGA 324
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 119 bits (302), Expect = 7e-32
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 39/192 (20%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
L AA AG+ ++L+ GA ++A D G P+H+AA N E+ ++ L + + V
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADV 73
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
A G TPL+LAA GH +V
Sbjct: 74 NAVDHAGM------------------------------------TPLRLAALFGHLEIVE 97
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 497
VL+K GA + G T +HLAA GH +++E + + A +V ++ K G TA ++
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKFGKTAFDISIDN 156
Query: 498 GQADTVRELLSH 509
G D L
Sbjct: 157 GNEDLAEILQKL 168
Score = 113 bits (285), Expect = 2e-29
Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 27/196 (13%)
Query: 213 MSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 272
M G+ + S LL A G + V ++ N A V+ D G + LHLAA +
Sbjct: 1 MRGSHH---HHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN 57
Query: 273 GYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 332
G+L++ L+ + A ++ + TPL LAA G L+
Sbjct: 58 GHLEIVE----------------------VLL-KNGADVNAVDHAGMTPLRLAALFGHLE 94
Query: 333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIA 392
+ ++LL GA ++A D +G P+H+AA E+ + L + + V A K G T I+
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVE-VLLKNGADVNAQDKFGKTAFDIS 153
Query: 393 AMQGSVGVIEELMKFD 408
G+ + E L K +
Sbjct: 154 IDNGNEDLAEILQKLN 169
Score = 112 bits (283), Expect = 3e-29
Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 60/209 (28%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
D + AA+ G +++L+ +G D ++ G TPLHLA+ N E+V++L++ +
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
+ N+V+ G + L A E V++LL+ GADV
Sbjct: 73 V---------NAVDHAGMTPLRLAALFGHLE-----------IVEVLLKNGADV------ 106
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
N G TPL +A GH+E+V +
Sbjct: 107 ----------------------------------NANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
L N A V+ D+ G++A ++ ++G +
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 107 bits (270), Expect = 2e-27
Identities = 51/173 (29%), Positives = 78/173 (45%), Gaps = 20/173 (11%)
Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLV 441
D AA G + LM +G ++A + + TPL LAA GH +V VL+
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMA---NGADVNAEDA-SGWTPLHLAAFNGHLEIVEVLL 67
Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQA 500
K GA + G T + LAA GH +++E + + A +V + G T LH+AA FG
Sbjct: 68 KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA-DVNANDMEGHTPLHLAAMFGHL 126
Query: 501 DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLL 553
+ V LL + GA + G T ++ +GNE++ +L
Sbjct: 127 EIVEVLLKN-----------GADV--NAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 103 bits (260), Expect = 5e-26
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 29/193 (15%)
Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
G+ + A AG +D + ++ G ++ N + + GWTPL +A
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMAN--GADV----NAEDASGWTPLHLAAF 56
Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
GH+E+V +L N A V+ D G + L LAA G+L++
Sbjct: 57 NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVE------------------- 97
Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVA 358
L+ + A ++ + TPLHLAA G L++ ++LL GA ++A D G+ ++
Sbjct: 98 ---VLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Query: 359 AQNNFPEVAQIFL 371
N ++A+I
Sbjct: 154 IDNGNEDLAEILQ 166
Score = 101 bits (254), Expect = 4e-25
Identities = 50/143 (34%), Positives = 72/143 (50%), Gaps = 16/143 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
L AA G + VR+L+ GA E+ +G+T +HLAA NGH +++E + + A +V
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA-DVN 74
Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+ G+T L +AA FG + V LL + GA G TPLHLAA
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLLKN-----------GADV--NANDMEGHTPLHLAA 121
Query: 542 YSGNENVVRLLLNSAGVQVDAQT 564
G+ +V +LL G V+AQ
Sbjct: 122 MFGHLEIVEVLL-KNGADVNAQD 143
Score = 100 bits (251), Expect = 9e-25
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 21/150 (14%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
L+ +GA N G TP+H AA G+L +++LL++G D + G TPL LA+
Sbjct: 33 LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Query: 116 AEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLL 175
E+V++L++ ++ N+ + +G + LH A E V++L
Sbjct: 93 LEIVEVLLKNGADV---------NANDMEGHTPLHLAAMFGHLE-----------IVEVL 132
Query: 176 LEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
L+ GADV+ Q K +TAF GN D+
Sbjct: 133 LKNGADVNAQDK-FGKTAFDISIDNGNEDL 161
Score = 90.1 bits (225), Expect = 3e-21
Identities = 47/236 (19%), Positives = 80/236 (33%), Gaps = 83/236 (35%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
L A+R + + V +L+ ++ N+ + G + LH A E
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADV---------NAEDASGWTPLHLAAFNGHLE--- 61
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
V++LL+ GADV
Sbjct: 62 --------IVEVLLKNGADV---------------------------------------- 73
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
N G TPL +A GH+E+V +L N A V+ D EG + LHLAA G+L++
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVE--- 130
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
L+ + A ++ +T ++ + G + ++L
Sbjct: 131 -------------------VLL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 80.5 bits (200), Expect = 6e-18
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 32/133 (24%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
TPLH+AA V+ +LLK+GA ++ A G L
Sbjct: 48 WTPLHLAAFNGHLEIVE-------VLLKNGA-----DVNAVDHAG-MTPLRLAALFGHLE 94
Query: 56 ----LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
LLK+GA N +G TP+H AA +G+L +++LL++G D ++K G+T ++
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
Query: 112 RNCKAEVVDLLIQ 124
N ++ ++L +
Sbjct: 155 DNGNEDLAEILQK 167
Score = 37.0 bits (87), Expect = 0.006
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
G+ GS+ L AA +G ++ VR+L+ + G V+A+
Sbjct: 3 GSHHHHHHGSD-LGKKLLEAARAGRDDEVRILM-ANGADVNAE 43
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 119 bits (300), Expect = 2e-31
Identities = 39/229 (17%), Positives = 69/229 (30%), Gaps = 61/229 (26%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHA-RVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSV 287
+ +G ++ + L V+ D+ G + L A+ G ++ V
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIET---------V 52
Query: 288 MSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 347
FL+ + A IL +++ L LA+ G + LLL+ I+
Sbjct: 53 R-------------FLL-EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY 98
Query: 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
D G P+ A + N + + L A + +T G
Sbjct: 99 DWNGGTPLLYAVRGNHVKCVE-ALLARGADLTTEADSGY--------------------- 136
Query: 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFT 456
TP+ LA G+ V +V+ N
Sbjct: 137 ---------------TPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 118 bits (299), Expect = 2e-31
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 7/155 (4%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGA-SIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
+H A G+L K L G ++ D++G P+ A+ E + L +
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGAD 61
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 436
K+ + +A+ G ++ L++ V I+ + TPL A G H
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLE---RDVDINIYDW-NGGTPLLYAVRGNHVKC 117
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
V L+ GA T E +G+T + LA G+ +V +
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
Score = 116 bits (293), Expect = 1e-30
Identities = 44/209 (21%), Positives = 67/209 (32%), Gaps = 61/209 (29%)
Query: 70 GQTPVHAAAKYGNLVTLQLLLEDGGDPM-YKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
+H A G L L+ L G + + ++ G TPL AS + E V L+++ +
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
+ + ++ SAL A + V LLLE D+
Sbjct: 62 ---------PHILAKERESALSLASTGGYTD-----------IVGLLLERDVDI------ 95
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
N G TPLL A H++ V +
Sbjct: 96 ----------------------------------NIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
L A + G + + LA GY KV
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKV 150
Score = 115 bits (292), Expect = 2e-30
Identities = 40/185 (21%), Positives = 73/185 (39%), Gaps = 22/185 (11%)
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSG--VISARNRVTEATPLQLAAEGGHANVVRVLVK 442
+ H A QG + ++E ++ G +++ + TPL A+ G VR L++
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLR---KGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLE 57
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFGQAD 501
GA K +A+ LA+ G+ ++ + +N+Y G T L A
Sbjct: 58 WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-GGTPLLYAVRGNHVK 116
Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
V LL+ GA ++SG TP+ LA G V +++ + +++
Sbjct: 117 CVEALLAR-----------GADL--TTEADSGYTPMDLAVALGYRKVQQVIE-NHILKLF 162
Query: 562 AQTQE 566
Sbjct: 163 QSNLV 167
Score = 110 bits (278), Expect = 2e-28
Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 29/196 (14%)
Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
+ H A G D L L + G + +NK G+TPL+ A G +E V +L
Sbjct: 4 LSIHQLAAQGELDQLKEHLRK--GDNL---VNKPDERGFTPLIWASAFGEIETVRFLLEW 58
Query: 252 HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVI 311
A + +E SAL LA+ GY + L+ + I
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVG----------------------LLL-ERDVDI 95
Query: 312 DILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
+I TPL A ++ + LL GA + D G P+ +A + +V Q +
Sbjct: 96 NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQ-VI 154
Query: 372 RAHPSLVTATTKDGNT 387
H + +
Sbjct: 155 ENHILKLFQSNLVPAD 170
Score = 110 bits (278), Expect = 2e-28
Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 82/252 (32%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
+H + + + + + K VN +E G + L +A + E
Sbjct: 2 DSLSIHQLAAQGELDQLKEHL--------RKGDNLVNKPDERGFTPLIWASAFGEIE--- 50
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
TV+ LLE GAD
Sbjct: 51 --------TVRFLLEWGADP---------------------------------------- 62
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
+ + L +A G+ ++V +L ++++D G + L A ++K
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKC----- 117
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
V L+ A + TP+ LA G +V +++ +
Sbjct: 118 ----VE-------------ALL-ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Query: 343 SIDATDDQGQKP 354
+ ++ P
Sbjct: 160 KLFQSNLVPADP 171
Score = 109 bits (275), Expect = 4e-28
Identities = 43/210 (20%), Positives = 75/210 (35%), Gaps = 61/210 (29%)
Query: 55 MLLKSGA-GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
L+ G N + G TP+ A+ +G + T++ LLE G DP K E+ L LAS
Sbjct: 20 EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79
Query: 114 CKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVK 173
++V LL++ +I N + +G + L YA + K V+
Sbjct: 80 GYTDIVGLLLERDVDI---------NIYDWNGGTPLLYAVR-----------GNHVKCVE 119
Query: 174 LLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPL 233
LL GAD+ + G+TP+
Sbjct: 120 ALLARGADL----------------------------------------TTEADSGYTPM 139
Query: 234 LIACNRGHMELVNTMLNNHARVDVFDQEGR 263
+A G+ ++ + N+ ++ +
Sbjct: 140 DLAVALGYRKVQQVIENHILKLFQSNLVPA 169
Score = 85.2 bits (212), Expect = 1e-19
Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 32/131 (24%)
Query: 12 TPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM---------- 55
TPL A+ V+ LL+ GA P++ K+ AL
Sbjct: 38 TPLIWASAFGEIETVR-------FLLEWGADPHILA-----KER-ESALSLASTGGYTDI 84
Query: 56 ---LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
LL+ N+ +G TP+ A + ++ ++ LL G D + G TP+ LA
Sbjct: 85 VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144
Query: 113 NCKAEVVDLLI 123
+V ++
Sbjct: 145 LGYRKVQQVIE 155
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 121 bits (305), Expect = 2e-31
Identities = 37/268 (13%), Positives = 72/268 (26%), Gaps = 61/268 (22%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
G L + + + + RV F+ + L ++ G +
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQ--------- 54
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
++ + T LH A AG ++ K L+ G +++A D
Sbjct: 55 -------------RII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
G P+H AA N +V + + + ++ T D T
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT--------------------- 139
Query: 409 RSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
A E G+ + L NK A+ ++
Sbjct: 140 -------------AADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE 186
Query: 469 VLEEMRSSKALNVYSK-KLGVTALHVAA 495
+ M+ + + + A
Sbjct: 187 LP--MKEGDCMTIIHREDEDEIEWWWAR 212
Score = 117 bits (296), Expect = 3e-30
Identities = 33/211 (15%), Positives = 67/211 (31%), Gaps = 25/211 (11%)
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127
GQ + + T + G + N + L +S + ++V +I V
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
+ + N++G +ALH A E VK L++ G +V+
Sbjct: 62 DP---------SLPNDEGITALHNAVCAGHTE-----------IVKFLVQFGVNVNAADS 101
Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
+ T H A N V ++E G + A+ G+ +
Sbjct: 102 -DGWTPLHCAASCNNVQVCKFLVES--GAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Query: 248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVS 278
+ ++ + ++ AL ++
Sbjct: 158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELP 188
Score = 110 bits (276), Expect = 1e-27
Identities = 44/294 (14%), Positives = 76/294 (25%), Gaps = 83/294 (28%)
Query: 143 EDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGN 202
G +L + +KT + G V
Sbjct: 3 ITGQVSLPPGKR-----------TNLRKTGSERIAHGMRV-------------------- 31
Query: 203 NDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEG 262
K + LL + G +LV ++ + + EG
Sbjct: 32 ---------------------KFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70
Query: 263 RSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPL 322
+ALH A G+ ++ FLV ++ TPL
Sbjct: 71 ITALHNAVCAGHTEIVK----------------------FLV-QFGVNVNAADSDGWTPL 107
Query: 323 HLAAEAGQLQVCKLLLDLGASIDATDDQGQK---PIHVAAQNNFPEVAQIFLRAHPSLVT 379
H AA +QVCK L++ GA++ A + + + + +Q FL +
Sbjct: 108 HCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ-FLYGVQEKMG 166
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGH 433
K Q +EL + + + A
Sbjct: 167 IMNKGVIYALWDYEPQND----DELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Score = 108 bits (273), Expect = 4e-27
Identities = 40/301 (13%), Positives = 73/301 (24%), Gaps = 87/301 (28%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
G+ L R + I + N + L + + +
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRVK----------FNPLPLALLLDSSLEGEFD--- 51
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
V+ ++ D S N++
Sbjct: 52 --------LVQRIIYEVDDPS----------------LPNDE------------------ 69
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
G T L A GH E+V ++ V+ D +G + LH AA ++V
Sbjct: 70 ------GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK--- 120
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAV--IDILTLRKQTPLHLAAEAGQLQVCKLLLDL 340
FLV AAV + ++ E G Q + L +
Sbjct: 121 -------------------FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161
Query: 341 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 400
+ + + N E+ + + A + G
Sbjct: 162 QEKMGIMNKGVIYALWDYEPQNDDELP--MKEGDCMTIIHREDEDEIEWWWARLNDKEGY 219
Query: 401 I 401
+
Sbjct: 220 V 220
Score = 101 bits (255), Expect = 1e-24
Identities = 30/225 (13%), Positives = 68/225 (30%), Gaps = 35/225 (15%)
Query: 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
+ GQ + + N + AH V ++++G +++ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGS-ERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRI--- 56
Query: 408 DRSGVISARNRVTEA-----TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAA 462
I + + T L A GH +V+ LV+ G + + G+T +H AA
Sbjct: 57 -----IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 463 QNGHNQVLEEMRSSKALNVYSK----KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDP 518
+ QV + + S A V++ G + L
Sbjct: 112 SCNNVQVCKFLVESGA-AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV--------- 161
Query: 519 PTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
+ ++ + L ++ + + + + +
Sbjct: 162 --QEKM--GIMNKGVIYALWDYEPQNDDEL--PMKEGDCMTIIHR 200
Score = 101 bits (253), Expect = 2e-24
Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 23/186 (12%)
Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA--TPLQLAAEGGHANVVRVL 440
G E + R + L ++ G ++V+ +
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIA------HGMRVKFNPLPLALLLDSSLEGEFDLVQRI 56
Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQ 499
+ + N G TA+H A GH ++++ + NV + G T LH AA
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV-NVNAADSDGWTPLHCAASCNN 115
Query: 500 ADTVRELLSHVPGTVKSDPPTGAS-FLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558
+ L+ GA+ F G + L
Sbjct: 116 VQVCKFLVES-----------GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY-GVQE 163
Query: 559 QVDAQT 564
++
Sbjct: 164 KMGIMN 169
Score = 95.0 bits (237), Expect = 3e-22
Identities = 28/244 (11%), Positives = 66/244 (27%), Gaps = 46/244 (18%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
+ L R + + + G L+ ++
Sbjct: 6 QVSLPPGKR-TNLRKTGSERIAHGMRVK-------FNPLPLALLLDSSLEGEFDLVQRII 57
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
P+L D+G T +H A G+ ++ L++ G + + G TPLH A+ +
Sbjct: 58 YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ 117
Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
V L + + + + A+ + + + L
Sbjct: 118 VCKFL------VESGAAVFAMTYSDMQTAADKCEEMEEGYTQ-----------CSQFLYG 160
Query: 178 AGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIAC 237
+ + K A ++++ M + ++++ A
Sbjct: 161 VQEKMGIMNK-GVIYALWDYEPQNDDELP------MKEGDCMTIIHRE-DEDEIEWWWAR 212
Query: 238 NRGH 241
Sbjct: 213 LNDK 216
Score = 82.7 bits (205), Expect = 4e-18
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 15/115 (13%)
Query: 452 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVP 511
TG ++ + + E + V L + L ++ G+ D V+ ++
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGM-RVKFNPLPLALLLDSSLEGEFDLVQRIIYE-- 59
Query: 512 GTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
L ++ G+T LH A +G+ +V+ L+ GV V+A +
Sbjct: 60 ---------VDDP--SLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSD 102
Score = 35.7 bits (83), Expect = 0.026
Identities = 7/109 (6%), Positives = 17/109 (15%), Gaps = 28/109 (25%)
Query: 5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
S + +C+ L
Sbjct: 134 YSDMQTAADKCEEME---------------------------EGYTQCSQFLYGVQEKMG 166
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRN 113
+ + + + D +++ E A N
Sbjct: 167 IMNKGVIYALWDYEPQNDDELP-MKEGDCMTIIHREDEDEIEWWWARLN 214
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 118 bits (298), Expect = 2e-31
Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 39/192 (20%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
L AA G L+ LL +++A + G+ + V N PE+A+ L +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLL-LRGANP 63
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
+ G + AA G + ++
Sbjct: 64 DLKDRTGF------------------------------------AVIHDAARAGFLDTLQ 87
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 497
L++ A E+ G +HLAA+ GH +V+E + A NV + G TA +A +
Sbjct: 88 TLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
Query: 498 GQADTVRELLSH 509
G+ + V + ++
Sbjct: 148 GRNEVVSLMQAN 159
Score = 110 bits (277), Expect = 2e-28
Identities = 40/212 (18%), Positives = 72/212 (33%), Gaps = 62/212 (29%)
Query: 67 TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFV 126
+ + +AA G+L L LL++ + +N G T L + E+ L+
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRG 60
Query: 127 QNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQT 186
N + + G + +H A + + T++ LLE ADV
Sbjct: 61 ANP---------DLKDRTGFAVIHDAARAGFLD-----------TLQTLLEFQADV---- 96
Query: 187 KQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVN 246
N + + G PL +A GH+ +V
Sbjct: 97 ------------------------------------NIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 247 TMLNNHAR-VDVFDQEGRSALHLAAEHGYLKV 277
++ + A V + +G +A LA +G +V
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 103 bits (259), Expect = 5e-26
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 24/176 (13%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
L A RG +E + ++L N+ V+ + GR+AL + G +++
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIAR--------- 54
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ A D+ +H AA AG L + LL+ A ++ D
Sbjct: 55 -------------RLL-LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED 100
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
++G P+H+AA+ V + ++ S V G+T +A + G V+ +
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 100 bits (251), Expect = 6e-25
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 20/175 (11%)
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 440
+ AA +G + + L++ + V ++A+N T LQ+ G + + R L
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQ---NNVNVNAQNG-FGRTALQVMKLG-NPEIARRL 56
Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQ 499
+ GA+ +++TGF +H AA+ G L+ + +A +V + G LH+AA G
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA-DVNIEDNEGNLPLHLAAKEGH 115
Query: 500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
V L+ H AS +G + G T LA G VV L+
Sbjct: 116 LRVVEFLVKH-----------TASNVGH-RNHKGDTACDLARLYGRNEVVSLMQA 158
Score = 97.1 bits (243), Expect = 8e-24
Identities = 49/182 (26%), Positives = 67/182 (36%), Gaps = 38/182 (20%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM------------LLK 58
L AA D + LL++ N+ A+ G R AL LL
Sbjct: 6 GNELASAAARGDLE-QLTSLLQNNV-----NVNAQNGFG-RTALQVMKLGNPEIARRLLL 58
Query: 59 SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
GA P+L G +H AA+ G L TLQ LLE D ++ G PLHLA++ V
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
V+ L+ + V N G +A A + V L+
Sbjct: 119 VEFLV--------KHTASNVGHRNHKGDTACDLARL-----------YGRNEVVSLMQAN 159
Query: 179 GA 180
GA
Sbjct: 160 GA 161
Score = 95.5 bits (239), Expect = 3e-23
Identities = 46/240 (19%), Positives = 74/240 (30%), Gaps = 83/240 (34%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
L A+ E + L+Q N+ N+ N G +AL
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNV---------NAQNGFGRTALQVMKL-------- 47
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
+ E + LL GA+
Sbjct: 48 -GNPE---IARRLLLRGANP---------------------------------------- 63
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
+ + G+ + A G ++ + T+L A V++ D EG LHLAA+ G+L+V
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE--- 120
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
FLV A+ + + T LA G+ +V L+ GA
Sbjct: 121 -------------------FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 89.4 bits (223), Expect = 3e-21
Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 16/142 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
L AA G + L++ + +N G TA+ + G+ ++ + A N
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGA-NPD 64
Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
K + G +H AA G DT++ LL A + G PLHLAA
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEF-----------QADV--NIEDNEGNLPLHLAA 111
Query: 542 YSGNENVVRLLLNSAGVQVDAQ 563
G+ VV L+ V +
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHR 133
Score = 39.3 bits (93), Expect = 0.001
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 530 SESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
+E L AA G+ + LL V V+AQ
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLL-QNNVNVNAQ 34
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 118 bits (299), Expect = 3e-31
Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 13/182 (7%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGAS-IDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
+ G +L LD + ++ DD G P+H A + V ++ + +
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGAR 64
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 436
+ + +T H+AA G ++++L++ I+A N PL A G V
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQ---YKADINAVNE-HGNVPLHYACFWGQDQV 120
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAY 496
LV GA + NK G V A + E L +
Sbjct: 121 AEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ------NLNRIPYKDTFW 174
Query: 497 FG 498
G
Sbjct: 175 KG 176
Score = 115 bits (290), Expect = 5e-30
Identities = 39/212 (18%), Positives = 68/212 (32%), Gaps = 61/212 (28%)
Query: 67 TDDGQTPVHAAAKYGNLVTLQLLLEDGG-DPMYKNKIGETPLHLASRNCKAEVVDLLIQF 125
+ + + + GN V ++L L++ D + G +PLH A R ++ VV++LI
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 126 VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
I N +N + LH A + V+ LL+ AD+
Sbjct: 62 GARI---------NVMNRGDDTPLHLAASHGHRD-----------IVQKLLQYKADI--- 98
Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
N G PL AC G ++
Sbjct: 99 -------------------------------------NAVNEHGNVPLHYACFWGQDQVA 121
Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
++ N A V + ++ G + A +
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELL 153
Score = 114 bits (288), Expect = 8e-30
Identities = 36/211 (17%), Positives = 69/211 (32%), Gaps = 34/211 (16%)
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
E + G + + ++
Sbjct: 2 SPEFMDDIFTQCREGNAVAVR----------------------LWLDNTENDLNQGDDHG 39
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+PLH A G+ V ++L+ GA I+ + P+H+AA + ++ Q L+ + + +
Sbjct: 40 FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-YKADI 98
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
A + GN H A G V E+L+ +G +S N+ P+ A +
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLVA---NGALVSICNK-YGEMPVDKAKAPLRELLR 154
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
K G + N+ + G +
Sbjct: 155 ERAEKMGQ---NLNRIPY---KDTFWKGTTR 179
Score = 110 bits (277), Expect = 3e-28
Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 5/163 (3%)
Query: 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKF 407
+ I + +++L + + G + H A +G V+E L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM- 60
Query: 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 467
R I+ NR + TPL LAA GH ++V+ L++ A N+ G +H A G +
Sbjct: 61 -RGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118
Query: 468 QVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
QV E++ ++ A V K G + A +
Sbjct: 119 QVAEDLVANGA-LVSICNKYGEMPVDKAKAPLRELLRERAEKM 160
Score = 109 bits (274), Expect = 7e-28
Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 20/183 (10%)
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 440
+ + +G+ + + D + ++ + +PL A G + VV +L
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWL--DNTENDLNQGDD-HGFSPLHWACREGRSAVVEML 58
Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQ 499
+ GA N+ T +HLAA +GH +++++ KA ++ + + G LH A ++GQ
Sbjct: 59 IMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA-DINAVNEHGNVPLHYACFWGQ 117
Query: 500 ADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQ 559
+L+++ GA + ++ G P+ A E + G
Sbjct: 118 DQVAEDLVAN-----------GALV--SICNKYGEMPVDKAKAPLRELLRERAE-KMGQN 163
Query: 560 VDA 562
++
Sbjct: 164 LNR 166
Score = 106 bits (268), Expect = 5e-27
Identities = 41/230 (17%), Positives = 75/230 (32%), Gaps = 73/230 (31%)
Query: 142 NEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAG 201
+ + + C+ + + V+L L+
Sbjct: 2 SPEFMDDIFTQCR-----------EGNAVAVRLWLDNTE--------------------- 29
Query: 202 NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE 261
ND+ N+ G++PL AC G +V ++ AR++V ++
Sbjct: 30 -NDL-----------------NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71
Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
+ LHLAA HG+ + L+ + A I+ + P
Sbjct: 72 DDTPLHLAASHGHRDIVQ----------------------KLL-QYKADINAVNEHGNVP 108
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
LH A GQ QV + L+ GA + + G+ P+ A + +
Sbjct: 109 LHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158
Score = 105 bits (264), Expect = 2e-26
Identities = 43/265 (16%), Positives = 72/265 (27%), Gaps = 92/265 (34%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDGQ 71
+ R + L L + N D G
Sbjct: 7 DDIFTQCREGNAVAVRL-WLDNTE-------------------------NDLNQGDDHGF 40
Query: 72 TPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQ 131
+P+H A + G +++L+ G N+ +TPLHLA+ + ++V L+Q+ +I
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-- 98
Query: 132 EKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHE 191
N+VNE G LHYAC + + + L+ GA V
Sbjct: 99 -------NAVNEHGNVPLHYACFWGQDQ-----------VAEDLVANGALV--------- 131
Query: 192 TAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNN 251
+ G P+ A L
Sbjct: 132 -------------------------------SICNKYGEMPVDKAKAPLRELLRERAEKM 160
Query: 252 HARVDVFDQEGRSALHLAAEHGYLK 276
++ R G +
Sbjct: 161 GQNLN------RIPYKDTFWKGTTR 179
Score = 100 bits (251), Expect = 9e-25
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 17/146 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDE-NKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
+ G+A VR+ + + ++ + GF+ +H A + G + V+E + A +
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RI 65
Query: 482 YSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 540
+ T LH+AA G D V++LL + A +E G PLH A
Sbjct: 66 NVMNRGDDTPLHLAASHGHRDIVQKLLQY-----------KADI--NAVNEHGNVPLHYA 112
Query: 541 AYSGNENVVRLLLNSAGVQVDAQTQE 566
+ G + V L+ + G V +
Sbjct: 113 CFWGQDQVAEDLV-ANGALVSICNKY 137
Score = 88.6 bits (221), Expect = 1e-20
Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 22/133 (16%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALML 56
+PLH A R V+ ML+ GA N+ N +AA L
Sbjct: 40 FSPLHWACREGRSAVVE-------MLIMRGARINVMNRGDDTPLHLAAS-HGHRDIVQKL 91
Query: 57 LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
L+ A N + G P+H A +G + L+ +G NK GE P+ A +
Sbjct: 92 LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE 151
Query: 117 EVVDLLIQFVQNI 129
+ + + QN+
Sbjct: 152 LLRERAEKMGQNL 164
Score = 77.5 bits (192), Expect = 7e-17
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 15/112 (13%)
Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPG 512
+ + G+ + + ++ G + LH A G++ V L+
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR--- 61
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
GA + + TPLHLAA G+ ++V+ LL ++A
Sbjct: 62 --------GARI--NVMNRGDDTPLHLAASHGHRDIVQKLL-QYKADINAVN 102
Score = 43.2 bits (103), Expect = 5e-05
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 529 GSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
GS M + GN VRL L++ ++
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD 36
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 120 bits (302), Expect = 3e-31
Identities = 39/197 (19%), Positives = 65/197 (32%), Gaps = 11/197 (5%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
L AA G+L+V + + +++G +H A + FL + V
Sbjct: 23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVD-FLITAGANVN 81
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAA--EGGHANV 436
+ G T H AA + L++ G I A AT + G+A+
Sbjct: 82 SPDSHGWTPLHCAASCNDTVICMALVQ---HGAAIFATTLSDGATAFEKCDPYREGYADC 138
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAA 495
L S N A+ + +++ R +++ V + T AA
Sbjct: 139 ATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS--FREGESVTVLRRDGPEETDWWWAA 196
Query: 496 YFGQADTV-RELLSHVP 511
GQ V R P
Sbjct: 197 LHGQEGYVPRNYFGLFP 213
Score = 112 bits (282), Expect = 2e-28
Identities = 49/307 (15%), Positives = 82/307 (26%), Gaps = 89/307 (28%)
Query: 56 LLKSGAGPNLTTD---DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASR 112
+L+ P + + AA G L +Q +++ DP N+ G T LH A
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAIC 63
Query: 113 NCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTV 172
+VD LI N+ NS + G + LH A
Sbjct: 64 GANYSIVDFLITAGANV---------NSPDSHGWTPLHCAASCNDTV-----------IC 103
Query: 173 KLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTP 232
L++ GA + T + TAF C
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYRE------------------------------ 133
Query: 233 LLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRL 292
G+ + + + + + + AL + +SFR
Sbjct: 134 -------GYADCATYLADVEQSMGLMNSGAVYALWDYSAEF-----------GDELSFR- 174
Query: 293 PPHNIIPNGFLVHDHAAVIDILTLRK--QTPLHLAAEAGQLQ-VCKLLLDLGASIDATDD 349
+ +L +T AA GQ V + L +
Sbjct: 175 --------------EGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRS 220
Query: 350 QGQKPIH 356
+ + H
Sbjct: 221 KVKHHHH 227
Score = 103 bits (260), Expect = 2e-25
Identities = 35/250 (14%), Positives = 60/250 (24%), Gaps = 64/250 (25%)
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
+ LL A G +E+V + ++EG +ALH A +
Sbjct: 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVD--- 71
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
FL+ A ++ TPLH AA +C L+ GA
Sbjct: 72 -------------------FLI-TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGA 111
Query: 343 SIDATDDQ-GQKPIHVAA--QNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVG 399
+I AT G + + + A +L + +
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCAT-YLADVEQSMGLMNSGAVYALWDYSA----- 165
Query: 400 VIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVH 459
+ + + + T
Sbjct: 166 --------------------------------EFGDELSFREGESVTVLRRDGPEETDWW 193
Query: 460 LAAQNGHNQV 469
AA +G
Sbjct: 194 WAALHGQEGY 203
Score = 100 bits (252), Expect = 2e-24
Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 36/236 (15%)
Query: 172 VKLLLEAGADVSLQTKQNH--ETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIG 229
++ +L + A+ G +V+ +++ + ++ G
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDP----SQPNEEG 54
Query: 230 WTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMS 289
T L A + +V+ ++ A V+ D G + LH AA +
Sbjct: 55 ITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICM---------- 104
Query: 290 FRLPPHNIIPNGFLVHDHAAVIDILTLRK-QTPLHLAAEA--GQLQVCKLLLDLGASIDA 346
LV H A I TL T G L D+ S+
Sbjct: 105 ------------ALV-QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL 151
Query: 347 TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIE 402
+ + + E++ F V T AA+ G G +
Sbjct: 152 MNSGAVYALWDYSAEFGDELS--FREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205
Score = 98.9 bits (247), Expect = 9e-24
Identities = 39/253 (15%), Positives = 67/253 (26%), Gaps = 44/253 (17%)
Query: 30 LLKSGAGPNLTNIAARVKDGDRCALM-------------LLKSGAGPNLTTDDGQTPVHA 76
+L+ P R + L+ +K P+ ++G T +H
Sbjct: 4 VLRKAGSPRKAR---RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
A N + L+ G + + G TPLH A+ + L+Q I
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI------- 113
Query: 137 YVNSVN-EDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFH 195
+ DGA+A + L + + L +
Sbjct: 114 --FATTLSDGATAFEKCDPYREGYA---------DCATYLADVEQSMGLMNSGAVYALWD 162
Query: 196 YCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV-NTMLNNHAR 254
Y A D L + + ++ T A G V R
Sbjct: 163 YS--AEFGDEL--SFREGESVTV----LRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR 214
Query: 255 VDVFDQEGRSALH 267
V + + H
Sbjct: 215 VKPQRSKVKHHHH 227
Score = 86.9 bits (216), Expect = 2e-19
Identities = 34/142 (23%), Positives = 51/142 (35%), Gaps = 16/142 (11%)
Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRS 475
R R+ L AA G VV+ VK + N+ G TA+H A + +++ + +
Sbjct: 16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT 75
Query: 476 SKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGM 534
+ A NV S G T LH AA L+ H GA+ + G
Sbjct: 76 AGA-NVNSPDSHGWTPLHCAASCNDTVICMALVQH-----------GAA-IFATTLSDGA 122
Query: 535 TPLHLAAYS--GNENVVRLLLN 554
T G + L +
Sbjct: 123 TAFEKCDPYREGYADCATYLAD 144
Score = 78.1 bits (193), Expect = 2e-16
Identities = 32/198 (16%), Positives = 49/198 (24%), Gaps = 52/198 (26%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
T LH A + V L+ +GA N G
Sbjct: 55 ITALHNAIC--------------------GANYSIVD-------FLITAGANVNSPDSHG 87
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKN-KIGETPLHLASRNCK--AEVVDLLIQFVQ 127
TP+H AA + V L++ G G T + A+ L
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLA---- 143
Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
V + + +N AL E + V +
Sbjct: 144 -----DVEQSMGLMNSGAVYALWDYSAEFGDE------------LSFREGESVTVLRRDG 186
Query: 188 QNHETAFHYCAVAGNNDV 205
ET + + A+ G
Sbjct: 187 -PEETDWWWAALHGQEGY 203
Score = 76.5 bits (189), Expect = 5e-16
Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 19/135 (14%)
Query: 437 VRVLVKAGASCTDENK---TGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALH 492
+R +++ S + + AA G +V+++ + + G+TALH
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMN-DPSQPNEEGITALH 59
Query: 493 VAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL 552
A V L++ GA+ G TPLH AA + + L
Sbjct: 60 NAICGANYSIVDFLITA-----------GANV--NSPDSHGWTPLHCAASCNDTVICMAL 106
Query: 553 LNSAGVQVDAQTQEN 567
+ G + A T +
Sbjct: 107 V-QHGAAIFATTLSD 120
Score = 66.5 bits (163), Expect = 1e-12
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 12/118 (10%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTN---------IAARVKDG-DRCALMLLKSGA 61
TPLH AA D C L++ GA T ++G CA L
Sbjct: 89 TPLHCAASCNDTVICMA-LVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147
Query: 62 GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
L + + L + + ++ ET A+ + + V
Sbjct: 148 SMGLMNSGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 118 bits (298), Expect = 6e-31
Identities = 48/274 (17%), Positives = 85/274 (31%), Gaps = 89/274 (32%)
Query: 98 YKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTK 157
+ +K GE + + +D L N + + L AC
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDFLR---------------NYRDSYNRTPLMVACM--- 44
Query: 158 AELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTE 217
+ + L+E +
Sbjct: 45 --------LGMENAIDKLVENFDKL----------------------------------- 61
Query: 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+ G T L+ A + + +L+ + V+ D G++ L + GY ++
Sbjct: 62 -----EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEM 116
Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 337
S FL+ +H A ++ L +TPL +A++ G+ ++ K L
Sbjct: 117 SY----------------------FLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 338 LDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
L+LGA I A D G A EV +IF
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 115 bits (291), Expect = 5e-30
Identities = 34/194 (17%), Positives = 80/194 (41%), Gaps = 14/194 (7%)
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
+ + E Q L + D + P+ VA + +
Sbjct: 8 GEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV-ENFDK 60
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANV 436
+ +G+T A +G+ E+L+ G ++ ++ + TPL + G++ +
Sbjct: 61 LEDKDIEGSTALIWAVKNNRLGIAEKLLS---KGSNVNTKDF-SGKTPLMWSIIFGYSEM 116
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAA 495
L++ GA+ D N G T + +A++ G +++++++ A ++ ++ G+TA A
Sbjct: 117 SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA-DISARDLTGLTAEASAR 175
Query: 496 YFGQADTVRELLSH 509
FG+ + ++
Sbjct: 176 IFGRQEVIKIFTEV 189
Score = 111 bits (281), Expect = 1e-28
Identities = 42/214 (19%), Positives = 69/214 (32%), Gaps = 60/214 (28%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
N +TP+ A G + L+E+ K+ G T L A +N + + + L+
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
N+ N+ + G + L ++ +E LLE GA+V
Sbjct: 89 SKGSNV---------NTKDFSGKTPLMWSIIFGYSE-----------MSYFLLEHGANV- 127
Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
N + G TPL++A G E
Sbjct: 128 ---------------------------------------NDRNLEGETPLIVASKYGRSE 148
Query: 244 LVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+V +L A + D G +A A G +V
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEV 182
Score = 109 bits (274), Expect = 1e-27
Identities = 41/216 (18%), Positives = 83/216 (38%), Gaps = 36/216 (16%)
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
N E N + + N + S TPL++AC G ++ +
Sbjct: 7 NGEIVEKIKDEKSINQ----------NLDFLR--NYRDSYNRTPLMVACMLGMENAIDKL 54
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
+ N +++ D EG +AL A ++ L ++ L+
Sbjct: 55 VENFDKLEDKDIEGSTALIWAVKNNRLGIAE----------------------KLL-SKG 91
Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 368
+ ++ +TPL + G ++ LL+ GA+++ + +G+ P+ VA++ E+ +
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVK 151
Query: 369 IFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
L + ++A G T A + G VI+
Sbjct: 152 KLL-ELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 107 bits (269), Expect = 5e-27
Identities = 42/276 (15%), Positives = 85/276 (30%), Gaps = 89/276 (32%)
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQ 127
+G+ + L L Y++ TPL +A +D L++
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFLRN------YRDSYNRTPLMVACMLGMENAIDKLVENFD 59
Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
+ + +G++AL +A + + LL G++V
Sbjct: 60 KL---------EDKDIEGSTALIWAVKNN--------RLG---IAEKLLSKGSNV----- 94
Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
N + G TPL+ + G+ E+
Sbjct: 95 -----------------------------------NTKDFSGKTPLMWSIIFGYSEMSYF 119
Query: 248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307
+L + A V+ + EG + L +A+++G ++ L+ +
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVK----------------------KLL-EL 156
Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGAS 343
A I L T A G+ +V K+ ++ +
Sbjct: 157 GADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192
Score = 100 bits (253), Expect = 7e-25
Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 25/182 (13%)
Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVK 442
K+G I + ++ L + R+ TPL +A G N + LV+
Sbjct: 6 KNGEIVEKIKDEKSINQNLDFL--------RNYRDS-YNRTPLMVACMLGMENAIDKLVE 56
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 501
D++ G TA+ A +N + E++ S + NV +K G T L + FG ++
Sbjct: 57 NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS-NVNTKDFSGKTPLMWSIIFGYSE 115
Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVD 561
LL H GA+ + G TPL +A+ G +V+ LL G +
Sbjct: 116 MSYFLLEH-----------GANV--NDRNLEGETPLIVASKYGRSEIVKKLL-ELGADIS 161
Query: 562 AQ 563
A+
Sbjct: 162 AR 163
Score = 100 bits (252), Expect = 1e-24
Identities = 39/219 (17%), Positives = 81/219 (36%), Gaps = 35/219 (15%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
G I + + ++ + N D R+ L +A G
Sbjct: 8 GEIVEKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACMLGMENAID--------- 52
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
LV ++ ++ + T L A + +L + + LL G++++ D
Sbjct: 53 -------------KLV-ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFD 408
G+ P+ + + E++ L H + V +G T +A+ G ++++L++
Sbjct: 99 FSGKTPLMWSIIFGYSEMSYFLL-EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE-- 155
Query: 409 RSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGAS 446
G ISAR+ T T A G V+++ + +
Sbjct: 156 -LGADISARDL-TGLTAEASARIFGRQEVIKIFTEVRRA 192
Score = 95.5 bits (239), Expect = 6e-23
Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 47/208 (22%)
Query: 11 ETPLHIAAR------------VKDGDRC-ALMLLKSGAGPNLTNIAARVKDGDRCALMLL 57
E I +D LM +A + L+
Sbjct: 9 EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLM------------VACM-LGMENAIDKLV 55
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
++ +G T + A K L + LL G + K+ G+TPL + +E
Sbjct: 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115
Query: 118 VVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
+ L++ N+ N N +G + L A + ++E VK LLE
Sbjct: 116 MSYFLLEHGANV---------NDRNLEGETPLIVASKYGRSE-----------IVKKLLE 155
Query: 178 AGADVSLQTKQNHETAFHYCAVAGNNDV 205
GAD+S + TA + G +V
Sbjct: 156 LGADISARDL-TGLTAEASARIFGRQEV 182
Score = 79.4 bits (197), Expect = 3e-17
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 32/132 (24%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
T L A + + LL G+ N+ + G + LM
Sbjct: 69 STALIWAVKNNRLGIAE-------KLLSKGS-----NVNTKDFSG-KTPLMWSIIFGYSE 115
Query: 56 ----LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
LL+ GA N +G+TP+ A+KYG ++ LLE G D ++ G T A
Sbjct: 116 MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175
Query: 112 RNCKAEVVDLLI 123
+ EV+ +
Sbjct: 176 IFGRQEVIKIFT 187
Score = 69.3 bits (171), Expect = 8e-14
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 20/113 (17%)
Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHV 510
+K G + + NQ L+ +R+ + T L VA G + + +L+ +
Sbjct: 5 DKNGEIVEKIKDEKSINQNLDFLRNYRD------SYNRTPLMVACMLGMENAIDKLVEN- 57
Query: 511 PGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
E G T L A + + LL S G V+ +
Sbjct: 58 ----------FDKL--EDKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTK 97
Score = 44.3 bits (106), Expect = 3e-05
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 32/100 (32%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
+TPL + LL+ GA N+ R +G L+
Sbjct: 102 KTPLMWSIIFGYSEMSY-------FLLEHGA-----NVNDRNLEG-ETPLIVASKYGRSE 148
Query: 56 ----LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLE 91
LL+ GA + G T +A +G +++ E
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 114 bits (288), Expect = 5e-30
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 13/156 (8%)
Query: 318 KQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
L AA G+++ + LL+ GA+ +A + G++PI V + VA+ L H +
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA-RVAE-LLLLHGAE 69
Query: 378 VTATTKDGNTCA-HIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHAN 435
T H AA +G + + L + +G + R+ P+ LA E GH +
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHR---AGARLDVRDA-WGRLPVDLAEELGHRD 125
Query: 436 VVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
V R L A G + A G + + +
Sbjct: 126 VARYLRAAAG-----GTRGSNHARIDAAEGPSDIPD 156
Score = 102 bits (258), Expect = 6e-26
Identities = 32/222 (14%), Positives = 63/222 (28%), Gaps = 69/222 (31%)
Query: 57 LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
++ AG + + + AA G + ++ LLE G +P N G P+ +
Sbjct: 1 MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA- 57
Query: 117 EVVDLLIQFVQNISQEKVLEYVNSVNEDGA-SALHYACQVTKAELIPITSKEDQKTVKLL 175
V +LL+ N + +H A + + T+ +L
Sbjct: 58 RVAELLLLHGAE---------PNCADPATLTRPVHDAAREGFLD-----------TLVVL 97
Query: 176 LEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLI 235
AGA + + + + G P+ +
Sbjct: 98 HRAGARL----------------------------------------DVRDAWGRLPVDL 117
Query: 236 ACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
A GH ++ + G + + A G +
Sbjct: 118 AEELGHRDVARYLRAAAG-----GTRGSNHARIDAAEGPSDI 154
Score = 101 bits (253), Expect = 3e-25
Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 31/186 (16%)
Query: 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+ A L A RG +E V +L A + + GR + + G +V
Sbjct: 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARV 59
Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQT-PLHLAAEAGQLQVCKL 336
+ L+ H A + T P+H AA G L +
Sbjct: 60 AE----------------------LLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96
Query: 337 LLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQG 396
L GA +D D G+ P+ +A + +VA+ +LRA + I A +G
Sbjct: 97 LHRAGARLDVRDAWGRLPVDLAEELGHRDVAR-YLRAAAGGTRGSNHA-----RIDAAEG 150
Query: 397 SVGVIE 402
+ +
Sbjct: 151 PSDIPD 156
Score = 96.0 bits (240), Expect = 1e-23
Identities = 35/143 (24%), Positives = 50/143 (34%), Gaps = 16/143 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNV 481
L AA G VR L++AGA+ N G + + G +V E + A N
Sbjct: 14 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNC 72
Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+H AA G DT+ L GA ++ G P+ LA
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRA-----------GARL--DVRDAWGRLPVDLAE 119
Query: 542 YSGNENVVRLLLNSAGVQVDAQT 564
G+ +V R L +A
Sbjct: 120 ELGHRDVARYLR-AAAGGTRGSN 141
Score = 90.2 bits (225), Expect = 2e-21
Identities = 37/231 (16%), Positives = 60/231 (25%), Gaps = 81/231 (35%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
S E A L A + E V+ LLEAGA+
Sbjct: 5 AGSSMEPSADWLATAAARGRVE-----------EVRALLEAGANP--------------- 38
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
N S G P+ + G + +L + A +
Sbjct: 39 -------------------------NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC 72
Query: 258 FDQEGR-SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTL 316
D +H AA G+L ++H A +D+
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLV-----------------------VLHRAGARLDVRDA 109
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVA 367
+ P+ LA E G V + L ++ + A ++
Sbjct: 110 WGRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIP 155
Score = 84.5 bits (210), Expect = 2e-19
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
L AA + LL++GA PN N + R A +LL GA
Sbjct: 13 ADWLATAAARGRVE-EVRALLEAGANPNAPNSYGRRPIQVMMM--GSARVAELLLLHGAE 69
Query: 63 PNLTTDDGQT-PVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
PN T PVH AA+ G L TL +L G ++ G P+ LA +V
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129
Query: 122 LIQ 124
L
Sbjct: 130 LRA 132
Score = 83.3 bits (207), Expect = 5e-19
Identities = 36/236 (15%), Positives = 57/236 (24%), Gaps = 90/236 (38%)
Query: 99 KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
+ L A+ + E V L++ N N+ N G +
Sbjct: 8 SMEPSADWLATAAARGRVEEVRALLEAGAN---------PNAPNSYGRRPIQVMMM---- 54
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
S +LLL GA+
Sbjct: 55 -----GSAR---VAELLLLHGAEP------------------------------------ 70
Query: 219 SKALNKQTSIGWT-PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
N T P+ A G ++ + + AR+DV D GR + LA E G+ V
Sbjct: 71 ----NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV 126
Query: 278 SSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQV 333
+ +L A + A G +
Sbjct: 127 AR----------------------YLR-AAAGGTR-----GSNHARIDAAEGPSDI 154
Score = 74.1 bits (183), Expect = 8e-16
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 25/123 (20%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LL 57
P+ + R A +LL GA PN + + L
Sbjct: 46 RRPIQVMMM--GSARVAELLLLHGAEPNCAD-----PATLTRPVHDAAREGFLDTLVVLH 98
Query: 58 KSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAE 117
++GA ++ G+ PV A + G+ + L G G + + ++
Sbjct: 99 RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSD 153
Query: 118 VVD 120
+ D
Sbjct: 154 IPD 156
Score = 56.7 bits (138), Expect = 7e-10
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
Query: 483 SKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAY 542
S + L AA G+ + VR LL GA+ + G P+ +
Sbjct: 8 SMEPSADWLATAAARGRVEEVRALLEA-----------GANP--NAPNSYGRRPIQVMMM 54
Query: 543 SGNENVVRLLLNSAGVQVDAQTQE 566
G+ V LLL G + +
Sbjct: 55 -GSARVAELLL-LHGAEPNCADPA 76
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 113 bits (285), Expect = 3e-29
Identities = 35/193 (18%), Positives = 59/193 (30%), Gaps = 26/193 (13%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+ + G + A + + + + P AA+ + L V
Sbjct: 15 AMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL--EDRDV 69
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
A ++G T A GS + L + +G + R+ T L +AA VV
Sbjct: 70 DAVDENGRTALLFVAGLGSDKCVRLLAE---AGADLDHRDMRGGLTALHMAAGYVRPEVV 126
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYF 497
LV+ GA E++ G TA+ LA + +
Sbjct: 127 EALVELGADIEVEDERGLTALELAREILKTTPKG-----------------NPMQFGRRI 169
Query: 498 GQADTVRELLSHV 510
G + L V
Sbjct: 170 GLEKVINVLEGQV 182
Score = 112 bits (283), Expect = 4e-29
Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 30/193 (15%)
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
+ T +G K G+ + D ETP A+R + + L+
Sbjct: 8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLL 64
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
+ V++V+E+G +AL + + + V+LL EAGAD+
Sbjct: 65 EDR----------DVDAVDENGRTALLFVAGLGSDK-----------CVRLLAEAGADLD 103
Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHME 243
+ + TA H A +V+ ++E G +I + G T L +A
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVEL--GADI----EVEDERGLTALELAREILKTT 157
Query: 244 LVNTMLNNHARVD 256
+ R+
Sbjct: 158 PKGNPMQFGRRIG 170
Score = 107 bits (271), Expect = 2e-27
Identities = 42/229 (18%), Positives = 68/229 (29%), Gaps = 50/229 (21%)
Query: 217 EISKAL-NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYL 275
E++K + ++ G LI GH A V E + AA
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADE 57
Query: 276 KVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCK 335
+ S L+ D +D + +T L A G + +
Sbjct: 58 QALS----------------------QLLED--RDVDAVDENGRTALLFVAGLGSDKCVR 93
Query: 336 LLLDLGASIDATDDQ-GQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAM 394
LL + GA +D D + G +H+AA PEV + + + + + G T +A
Sbjct: 94 LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELARE 152
Query: 395 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
P+Q G V+ VL
Sbjct: 153 ILKTTPKG--------------------NPMQFGRRIGLEKVINVLEGQ 181
Score = 100 bits (251), Expect = 1e-24
Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 19/157 (12%)
Query: 408 DRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHN 467
+ + +I +R A + + GH+ A D T AA+
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA---DVVSEYETPWWTAARKADE 57
Query: 468 QVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLG 526
Q L ++ +V + + G TAL A G VR L GA L
Sbjct: 58 QALSQL-LEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEA-----------GAD-LD 103
Query: 527 ELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
G+T LH+AA VV L+ G ++ +
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVE 139
Score = 97.6 bits (244), Expect = 1e-23
Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 22/185 (11%)
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
T +G I G + + + TP AA +
Sbjct: 9 RTAGEGAMEYLIEWKDGHSPSWVPSS--YIAADVVSEYE----TPWWTAARKADEQALSQ 62
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNVYSKKLGVTALHVAAYFG 498
L++ ++ G TA+ A G ++ + + + A L+ + G+TALH+AA +
Sbjct: 63 LLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 121
Query: 499 QADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGV 558
+ + V L+ GA E+ E G+T L LA + G
Sbjct: 122 RPEVVEALVEL-----------GADI--EVEDERGLTALELAREILKTTPKGNPM-QFGR 167
Query: 559 QVDAQ 563
++ +
Sbjct: 168 RIGLE 172
Score = 96.4 bits (241), Expect = 2e-23
Identities = 39/212 (18%), Positives = 63/212 (29%), Gaps = 46/212 (21%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
+ +GA + + ADV +ET +
Sbjct: 7 GSRTAGEGAMEYLIEWK-----------DGHSPSWVPSSYIAADV----VSEYETPWWTA 51
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
A + L+ +LE ++ + G T LL G + V + A +D
Sbjct: 52 ARKADEQALSQLLE---DRDV----DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH 104
Query: 258 FDQE-GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTL 316
D G +ALH+AA + +V LV + A I++
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVE----------------------ALV-ELGADIEVEDE 141
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
R T L LA E + + G I
Sbjct: 142 RGLTALELAREILKTTPKGNPMQFGRRIGLEK 173
Score = 95.6 bits (239), Expect = 4e-23
Identities = 36/180 (20%), Positives = 65/180 (36%), Gaps = 29/180 (16%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTN-----IAARVKDGDRCALMLLKSGAGPNLT 66
I + + A AAR D AL L +
Sbjct: 16 MEYLIEWKDGHSP-SWVPSSYIAADVVSEYETPWWTAAR--KADEQALSQLLEDRDVDAV 72
Query: 67 TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKN-KIGETPLHLASRNCKAEVVDLLIQF 125
++G+T + A G+ ++LL E G D +++ + G T LH+A+ + EVV+ L++
Sbjct: 73 DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 132
Query: 126 VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
+I +E G +AL A ++ K ++ G + L+
Sbjct: 133 GADI---------EVEDERGLTALELAREILKTT-----------PKGNPMQFGRRIGLE 172
Score = 90.6 bits (226), Expect = 3e-21
Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 19/175 (10%)
Query: 341 GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGV 400
T +G + ++ +V + T AA +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQA 59
Query: 401 IEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN----KTGF 455
+ +L++ + A + T L A G VR+L +AGA D + + G
Sbjct: 60 LSQLLE----DRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEAGA---DLDHRDMRGGL 111
Query: 456 TAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
TA+H+AA +V+E + A ++ + + G+TAL +A + +
Sbjct: 112 TALHMAAGYVRPEVVEALVELGA-DIEVEDERGLTALELAREILKTTPKGNPMQF 165
Score = 83.7 bits (208), Expect = 7e-19
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
ETP AAR D AL L + + A D+C +L ++GA
Sbjct: 45 ETPWWTAAR--KADEQALSQLLEDRDVDAVDENGRTALLFVAG-LGSDKCVRLLAEAGAD 101
Query: 63 PNLT-TDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
+ G T +H AA Y ++ L+E G D +++ G T L LA K
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGN 161
Query: 122 LIQFVQNISQEKVLEY 137
+QF + I EKV+
Sbjct: 162 PMQFGRRIGLEKVINV 177
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 114 bits (286), Expect = 1e-28
Identities = 46/299 (15%), Positives = 88/299 (29%), Gaps = 60/299 (20%)
Query: 70 GQTPVHAAAKYGNLVTL----QLLLEDGGD----PMYKNKIGETPLHLASRNCKA---EV 118
+ + G+ L LL + G+T L A N A +
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64
Query: 119 VDLLIQFVQN--ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
+ +L+ + +E + V G +ALH A + + + V+LL+
Sbjct: 65 IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE-----------RRCKHYVELLV 113
Query: 177 EAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIA 236
E GADV Q + G PL +A
Sbjct: 114 EKGADVHAQARGRFFQPKDE--------------------------GGYFYFGELPLSLA 147
Query: 237 CNRGHMELVNTMLNN---HARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLP 293
+V+ + N A + D G + LH + K +
Sbjct: 148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY------ 201
Query: 294 PHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ 352
++ + + +L +PL +AA+ G++ + + ++ + A
Sbjct: 202 -DLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259
Score = 88.3 bits (219), Expect = 7e-20
Identities = 40/266 (15%), Positives = 76/266 (28%), Gaps = 70/266 (26%)
Query: 319 QTPLHLAA---EAGQLQVCKLLLDLG-----------ASIDATDDQGQKPIHVAAQNNFP 364
+T L A AG+ +LLD+ + +GQ +H+A +
Sbjct: 47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106
Query: 365 EVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATP 424
++ + + V A + G P
Sbjct: 107 HYVELLV-EKGADVHAQARGRFFQPKDEGGYFYFG----------------------ELP 143
Query: 425 LQLAAEGGHANVVRVLVKAGASCTD---ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
L LAA ++V L + G D ++ G T +H N ++
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADN--------TRENTK 195
Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+ K+ L A + LL++ G++PL +AA
Sbjct: 196 FVTKMYDLLLIKCAKLFPDTNLEALLNN----------------------DGLSPLMMAA 233
Query: 542 YSGNENVVRLLLNSAGVQVDAQTQEN 567
+G + + ++ A +
Sbjct: 234 KTGKIGIFQHIIRREIADAAAHHHHH 259
Score = 87.1 bits (216), Expect = 2e-19
Identities = 47/273 (17%), Positives = 74/273 (27%), Gaps = 76/273 (27%)
Query: 11 ETPLHIAARVKDGDR--CALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTD 68
+T L A R +LL N+ + R
Sbjct: 47 KTCLPKALLNLSAGRNDTIPILLD--IAEKTGNMREFINSPFRDV-------------YY 91
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK--------------IGETPLHLASRNC 114
GQT +H A + ++LL+E G D + + GE PL LA+
Sbjct: 92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKL 174
+ +V L + + G + LH V A+ +K K L
Sbjct: 152 QPHIVHYL------TENGHKQADLRRQDSRGNTVLHAL--VAIADNTRENTKFVTKMYDL 203
Query: 175 LLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLL 234
LL A + T NND G +PL+
Sbjct: 204 LLIKCAKLFPDTNLEALL---------NND------------------------GLSPLM 230
Query: 235 IACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
+A G + + ++ H
Sbjct: 231 MAAKTGKIGIFQHIIRREIADA----AAHHHHH 259
Score = 85.2 bits (211), Expect = 9e-19
Identities = 39/266 (14%), Positives = 73/266 (27%), Gaps = 55/266 (20%)
Query: 231 TPLLIACNRG----HMELVNTMLNNHARVDVFDQE----GRSALHLAAEHGYLKVSSGKS 282
L +RG L++ +L + R+ + G++ L A + +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
+ + ++ + R QT LH+A E +LL++ GA
Sbjct: 67 ILLDIA------EKTGNMREFINSPFRDVYY---RGQTALHIAIERRCKHYVELLVEKGA 117
Query: 343 SIDATDDQ--------------GQKPIHVAAQNNFPEVAQIFLRAHPSL---VTATTKDG 385
+ A G+ P+ +AA N P + + + G
Sbjct: 118 DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT-ENGHKQADLRRQDSRG 176
Query: 386 NTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
NT H + E T L
Sbjct: 177 NTVLHALVAIA--------------------DNTRENTKFVTKMYDLLLIKCAKLFPDTN 216
Query: 446 SCTDENKTGFTAVHLAAQNGHNQVLE 471
N G + + +AA+ G + +
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQ 242
Score = 78.3 bits (193), Expect = 2e-16
Identities = 35/193 (18%), Positives = 63/193 (32%), Gaps = 39/193 (20%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
+T LHIA + +L++ GA ++ A+ + G
Sbjct: 94 QTALHIAIERRCKH-YVELLVEKGA-----DVHAQARGRFFQ-------PKDEGGYFYFG 140
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGG---DPMYKNKIGETPLHLASRNCK---------AEV 118
+ P+ AA + L E+G D ++ G T LH ++
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200
Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
DLL+ + + LE + +N DG S L A + K + ++
Sbjct: 201 YDLLLIKCAKLFPDTNLEAL--LNNDGLSPLMMAAKTGKIG-----------IFQHIIRR 247
Query: 179 GA-DVSLQTKQNH 190
D + +H
Sbjct: 248 EIADAAAHHHHHH 260
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 109 bits (275), Expect = 2e-28
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 7/154 (4%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
L AA AGQ ++L+ GA D G P+H+AAQ ++ LR
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLR-AGVSR 60
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
A TK T H+AA +G ++E L+K G ++A++ + T L A E H VV
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLK---HGADVNAKDM-LKMTALHWATEHNHQEVV 116
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
+L+K GA ++K TA ++ NG+ + E
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Score = 108 bits (273), Expect = 5e-28
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 21/171 (12%)
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 442
D AA G + LM +G + +PL LAA+ GH + VL++
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMA---NGAPFTTDWL--GTSPLHLAAQYGHFSTTEVLLR 55
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 501
AG S K T +H+AA GH ++E + A +V +K L +TALH A +
Sbjct: 56 AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA-DVNAKDMLKMTALHWATEHNHQE 114
Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLL 552
V L+ + GA S+ T ++ +GNE++ +L
Sbjct: 115 VVELLIKY-----------GADV--HTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 106 bits (267), Expect = 3e-27
Identities = 35/209 (16%), Positives = 72/209 (34%), Gaps = 61/209 (29%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
D + AA+ G +++L+ +G + +G +PLHLA++ ++L++ +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
++ + + LH A A V++LL+ GADV
Sbjct: 60 R---------DARTKVDRTPLHMAASEGHAN-----------IVEVLLKHGADV------ 93
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
N + + T L A H E+V +
Sbjct: 94 ----------------------------------NAKDMLKMTALHWATEHNHQEVVELL 119
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+ A V + ++A ++ ++G +
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Score = 104 bits (261), Expect = 2e-26
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 25/176 (14%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
LL A G + V ++ N A D G S LHLAA++G+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTE--------- 51
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ D T +TPLH+AA G + ++LL GA ++A D
Sbjct: 52 -------------VLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
+H A ++N EV + L + + V +K T I+ G+ + E L
Sbjct: 98 MLKMTALHWATEHNHQEVVE-LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 95.1 bits (238), Expect = 3e-23
Identities = 44/144 (30%), Positives = 60/144 (41%), Gaps = 21/144 (14%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKT--GFTAVHLAAQNGHNQVLEEMRSSKALN 480
L AA G + VR+L+ GA G + +HLAAQ GH E + + +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGA---PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV-S 59
Query: 481 VYSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
++ K+ T LH+AA G A+ V LL H GA MT LH
Sbjct: 60 RDARTKVDRTPLHMAASEGHANIVEVLLKH-----------GADV--NAKDMLKMTALHW 106
Query: 540 AAYSGNENVVRLLLNSAGVQVDAQ 563
A ++ VV LL+ G V Q
Sbjct: 107 ATEHNHQEVVELLI-KYGADVHTQ 129
Score = 89.4 bits (223), Expect = 3e-21
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 32/158 (20%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRC-ALM-------------L 56
L AAR D + L+ +GA D L L
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGA-----PFT---TDWLGTSPLHLAAQYGHFSTTEVL 53
Query: 57 LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
L++G + T +TP+H AA G+ +++LL+ G D K+ + T LH A+ +
Sbjct: 54 LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113
Query: 117 EVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQ 154
EVV+LLI++ ++ ++ ++ +A +
Sbjct: 114 EVVELLIKYGADV---------HTQSKFCKTAFDISID 142
Score = 86.7 bits (216), Expect = 2e-20
Identities = 40/235 (17%), Positives = 72/235 (30%), Gaps = 84/235 (35%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
L A+R + + V +L+ + + G S LH A Q
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFTT----------DWLGTSPLHLAAQ-------- 43
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
T ++LL AG
Sbjct: 44 YGHFS---TTEVLLRAGVSR---------------------------------------- 60
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
+ +T + TPL +A + GH +V +L + A V+ D +ALH A EH + +V
Sbjct: 61 DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE--- 117
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLL 337
L+ + A + + +T ++ + G + ++L
Sbjct: 118 -------------------LLI-KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 80.1 bits (199), Expect = 5e-18
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 32/137 (23%)
Query: 5 NSGKLRETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--- 55
+ L +PLH+AA+ + +LL++G + AR K R L
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTE-------VLLRAGV-----SRDARTKVD-RTPLHMAA 75
Query: 56 ----------LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGET 105
LLK GA N T +H A ++ + ++LL++ G D ++K +T
Sbjct: 76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT 135
Query: 106 PLHLASRNCKAEVVDLL 122
++ N ++ ++L
Sbjct: 136 AFDISIDNGNEDLAEIL 152
Score = 70.1 bits (173), Expect = 2e-14
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGT 513
+ AA+ G + + + ++ A + LG + LH+AA +G T LL
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGA-PFTTDWLGTSPLHLAAQYGHFSTTEVLLRA---- 56
Query: 514 VKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
G S + ++ TPLH+AA G+ N+V +LL G V+A+
Sbjct: 57 -------GVSR--DARTKVDRTPLHMAASEGHANIVEVLL-KHGADVNAK 96
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 109 bits (275), Expect = 3e-28
Identities = 39/179 (21%), Positives = 68/179 (37%), Gaps = 27/179 (15%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNH-ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSV 287
L A RG ++ V +L+ D ++ G++AL + G ++
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIAL-------- 52
Query: 288 MSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDAT 347
L+ A ++ +P+H AA G L K+L++ GA ++
Sbjct: 53 --------------ELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP 97
Query: 348 DDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMK 406
D G PIH+A Q V FL A + G T +A +G+ +++ L
Sbjct: 98 DGTGALPIHLAVQEGHTAVVS-FLAAESD-LHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 109 bits (275), Expect = 3e-28
Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 42/193 (21%)
Query: 320 TPLHLAAEAGQLQ-VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
L AA G +Q V +LL DA + G+ + V + +A L +
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIAL-ELLKQGASP 61
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
G +P+ AA G + ++
Sbjct: 62 NVQDTSGT------------------------------------SPVHDAARTGFLDTLK 85
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYF 497
VLV+ GA + TG +HLA Q GH V+ + ++++ +++ + G+T L +A
Sbjct: 86 VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-AAES-DLHRRDARGLTPLELALQR 143
Query: 498 GQADTVRELLSHV 510
G D V L H+
Sbjct: 144 GAQDLVDILQGHM 156
Score = 107 bits (269), Expect = 2e-27
Identities = 38/209 (18%), Positives = 66/209 (31%), Gaps = 63/209 (30%)
Query: 70 GQTPVHAAAKYGNL-VTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
+ AA G++ +LL + P N+ G+T L + + L++ +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGAS 60
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
N + G S +H A + + T+K+L+E GADV
Sbjct: 61 P---------NVQDTSGTSPVHDAARTGFLD-----------TLKVLVEHGADV------ 94
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
N G P+ +A GH +V+
Sbjct: 95 ----------------------------------NVPDGTGALPIHLAVQEGHTAVVS-F 119
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKV 277
L + + D G + L LA + G +
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDL 148
Score = 106 bits (268), Expect = 3e-27
Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 21/172 (12%)
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
AA +G V + L+ R V A NR T LQ+ G + L+K
Sbjct: 2 AGDRLSGAAARGDVQEVRRLL--HRELVHPDALNR-FGKTALQVMMFG-STAIALELLKQ 57
Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADT 502
GAS ++ +G + VH AA+ G L+ + A +V G +H+A G
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA-DVNVPDGTGALPIHLAVQEGHTAV 116
Query: 503 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
V L + SD G+TPL LA G +++V +L
Sbjct: 117 VSFLAAE------SDL--------HRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 99.0 bits (248), Expect = 1e-24
Identities = 45/174 (25%), Positives = 64/174 (36%), Gaps = 31/174 (17%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAGP 63
L AA D +L + P+ N + AL LLK GA P
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF--GSTAIALELLKQGASP 61
Query: 64 NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
N+ G +PVH AA+ G L TL++L+E G D + G P+HLA + VV L
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLE 177
++ + G + L A Q + Q V +L
Sbjct: 122 AESD----------LHRRDARGLTPLELALQ-----------RGAQDLVDILQG 154
Score = 98.3 bits (246), Expect = 2e-24
Identities = 40/210 (19%), Positives = 62/210 (29%), Gaps = 61/210 (29%)
Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
L AA G ++ L+H D L +T
Sbjct: 2 AGDRLSGAAARGDVQEVR----------------------RLLHRELVHPDALNRFGKTA 39
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
L + G + LL GAS + D G P+H AA+ F + ++ + H + V
Sbjct: 40 LQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EHGADVNVP 97
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLV 441
G P+ LA + GH VV L
Sbjct: 98 DGTGA------------------------------------LPIHLAVQEGHTAVVSFLA 121
Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
+ + G T + LA Q G +++
Sbjct: 122 A-ESDLHRRDARGLTPLELALQRGAQDLVD 150
Score = 97.9 bits (245), Expect = 4e-24
Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 23/172 (13%)
Query: 42 IAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
AA D +L + P+ G+T + +G+ LL+ G P ++
Sbjct: 8 GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDT 66
Query: 102 IGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELI 161
G +P+H A+R + + +L++ ++ N + GA +H A Q
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADV---------NVPDGTGALPIHLAVQEGHTA-- 115
Query: 162 PITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQM 213
V L +D+ + T G D++ + M
Sbjct: 116 ---------VVSFLAA-ESDLHRRDA-RGLTPLELALQRGAQDLVDILQGHM 156
Score = 90.9 bits (227), Expect = 8e-22
Identities = 40/237 (16%), Positives = 68/237 (28%), Gaps = 84/237 (35%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
L A+ + V L+ + L + +++N G +AL
Sbjct: 2 AGDRLSGAAARGDVQEVRRLL--------HRELVHPDALNRFGKTALQVM---------- 43
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
LL+ GA
Sbjct: 44 --MFGSTAIALELLKQGASP---------------------------------------- 61
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
N Q + G +P+ A G ++ + ++ + A V+V D G +HLA + G+ V S
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS--- 118
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLD 339
FL + + R TPL LA + G + +L
Sbjct: 119 -------------------FLAA-ESD-LHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 87.9 bits (219), Expect = 1e-20
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 17/138 (12%)
Query: 423 TPLQLAAEGGHANVVRVLV-KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
L AA G VR L+ + N+ G TA+ + G + E+ A +
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGA-SP 61
Query: 482 YSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 540
+ G + +H AA G DT++ L+ H GA + +G P+HLA
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEH-----------GADV--NVPDGTGALPIHLA 108
Query: 541 AYSGNENVVRLLLNSAGV 558
G+ VV L + +
Sbjct: 109 VQEGHTAVVSFLAAESDL 126
Score = 71.3 bits (176), Expect = 8e-15
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 28/113 (24%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTTDDG 70
+P+H AAR D +L++ GA N+ G
Sbjct: 69 TSPVHDAARTGFLD---------------------------TLKVLVEHGADVNVPDGTG 101
Query: 71 QTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLI 123
P+H A + G+ + L D ++ G TPL LA + ++VD+L
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153
Score = 40.9 bits (97), Expect = 2e-04
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 533 GMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
L AA G+ VR LL+ V DA
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL 32
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 113 bits (283), Expect = 2e-27
Identities = 44/277 (15%), Positives = 75/277 (27%), Gaps = 46/277 (16%)
Query: 316 LRKQTPLHLAAEAGQ---LQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR 372
++ + +AA G L LLL + + + +AA+N V
Sbjct: 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149
Query: 373 AHPSLVTAT-TKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG 431
P+ + A + +AA G + V+ L + + + A
Sbjct: 150 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 209
Query: 432 GHANVVRVLVKAGA----------------------SCTDENKTGFTAVHLAAQNGHNQV 469
GH NV+ L+ + K A L+ +G +
Sbjct: 210 GHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL 269
Query: 470 LEEMRSSKALNVYSKKLGVTALHVAAYFGQ---ADTVRELLSHVPGTVKSDPPTGASFLG 526
+ + G L D +R LLS +
Sbjct: 270 VTKSEC---------LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT-------- 312
Query: 527 ELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
L LA GN+ LLL+ V +
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349
Score = 108 bits (271), Expect = 7e-26
Identities = 49/353 (13%), Positives = 91/353 (25%), Gaps = 77/353 (21%)
Query: 217 EISKALNKQTSIGWTPLLIAC---NRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHG 273
++ +K+ +A ++ + +L + V V E A LAAE+G
Sbjct: 80 QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139
Query: 274 YLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK-QTPLHLAAEAGQLQ 332
+L V L L I + + LAAE G L
Sbjct: 140 HLHV-----LN-----------------RLCELAPTEIMAMIQAENYHAFRLAAENGHLH 177
Query: 333 VCKLLLDLGASIDATDDQGQK---PIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA 389
V L +L + Q + A V FL P ++
Sbjct: 178 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN-FLLDCPVMLAYAEIHEFEYG 236
Query: 390 HIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTD 449
+ L + +L+ G ++V
Sbjct: 237 EKYVNPFIARHVNRLKEMH--------------DAFKLSNPDGVFDLVT---------KS 273
Query: 450 ENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK--------KLGVTALHVAAYFGQAD 501
E GF + + +L+++R ++ L +A G
Sbjct: 274 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 333
Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
LLS + + + ++ G ++ + L
Sbjct: 334 ACALLLSI----------------PSVLALTKANNYYINETGGRLDLRAVALE 370
Score = 105 bits (262), Expect = 1e-24
Identities = 49/348 (14%), Positives = 91/348 (26%), Gaps = 57/348 (16%)
Query: 42 IAARVKDGDRCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
+ +R A L + ++ L TL LLL
Sbjct: 67 LCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA 126
Query: 102 IGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELI 161
LA+ N V++ L + + + A A +
Sbjct: 127 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAM-------IQAENYHAFRLAAE------- 172
Query: 162 PITSKEDQKTVKLLLEAGADVSLQTKQNH-ETAFHYCAVA-GNNDVLTGMLEQMSGTEIS 219
+ L E + Q AF + AV G+++V+ +L+ ++
Sbjct: 173 ----NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--PVMLA 226
Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSS 279
A G + + + R+ +E A L+ G + +
Sbjct: 227 YAEIH-----------EFEYGEKYVNPFIARHVNRL----KEMHDAFKLSNPDGVFDLVT 271
Query: 280 GKSLKHSVMSFRLPPHNIIPNGFLVH-------------DHAAVIDILTLRKQTPLHLAA 326
K + N+I V A + L LA
Sbjct: 272 ----KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 327
Query: 327 EAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAH 374
G C LLL + + + T ++ ++ + L H
Sbjct: 328 RLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLDLRAVALEHH 372
Score = 67.7 bits (165), Expect = 2e-12
Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 16/144 (11%)
Query: 427 LAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMR---SSKALNVYS 483
L H N + + A + +AA G + L+ + +S +
Sbjct: 67 LCLYYAHYNRNAKQLWSDA--HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI 124
Query: 484 KKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYS 543
+ A +AA G + L P + + LAA +
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI-----------QAENYHAFRLAAEN 173
Query: 544 GNENVVRLLLNSAGVQVDAQTQEN 567
G+ +V+ L A + A Q
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAE 197
Score = 65.0 bits (158), Expect = 2e-11
Identities = 35/271 (12%), Positives = 65/271 (23%), Gaps = 50/271 (18%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
+AA + L + + I A + A
Sbjct: 129 YQAFRLAAENGHLHVLN-------RLCELAPTEIMAMIQA----ENYHAFRLAAENGHLH 177
Query: 56 ----LLKSGA---GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLH 108
L + + ++ AA G+ + LL+ Y
Sbjct: 178 VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGE 237
Query: 109 LASRNCKAEVVDLLIQF---VQNISQEKVLEYVN-SVNEDGASALHYACQVTKAELIPIT 164
A V+ L + + + + V + V S G L + L+
Sbjct: 238 KYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDI 297
Query: 165 SKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNK 224
++A A + + GN +L S ++KA
Sbjct: 298 RFLLSIPG---IKALAPTATIPGDAN-ELLRLALRLGNQGACALLLSIPSVLALTKA--- 350
Query: 225 QTSIGWTPLLIACNRGHMELVNTMLNNHARV 255
I G ++L L +H
Sbjct: 351 ------NNYYINETGGRLDLRAVALEHHHHH 375
Score = 47.6 bits (113), Expect = 6e-06
Identities = 13/124 (10%), Positives = 33/124 (26%), Gaps = 22/124 (17%)
Query: 1 MLQQNSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSG 60
++ ++ L R D L ++ ++ +K+
Sbjct: 269 LVTKSECLQGFYMLRNLIR--RNDEVLLDDIRF-----------------LLSIPGIKAL 309
Query: 61 AGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVD 120
A D + A + GN LLL ++ + ++
Sbjct: 310 APTATIPGDANELLRLALRLGNQGACALLLSIPSV---LALTKANNYYINETGGRLDLRA 366
Query: 121 LLIQ 124
+ ++
Sbjct: 367 VALE 370
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 104 bits (263), Expect = 1e-26
Identities = 42/219 (19%), Positives = 72/219 (32%), Gaps = 65/219 (29%)
Query: 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGG-DPMYKNKIGETPLHLASRNCKAEV 118
GA N + + AAK G++ T++ L + TPLH A+ + V
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 119 VDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
V+ L+Q ++ ++ ++ G LH AC E +LL++
Sbjct: 58 VEYLLQHGADV---------HAKDKGGLVPLHNACSYGHYE-----------VAELLVKH 97
Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
GA V N +TPL A
Sbjct: 98 GAVV----------------------------------------NVADLWKFTPLHEAAA 117
Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
+G E+ +L + A +++G + L L G +
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDI 155
Score = 103 bits (259), Expect = 5e-26
Identities = 44/193 (22%), Positives = 64/193 (33%), Gaps = 41/193 (21%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDL-GASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSL 377
L AA+AG ++ K L + + + + P+H AA N V + L H +
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGAD 67
Query: 378 VTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVV 437
V A K G PL A GH V
Sbjct: 68 VHAKDKGGLV------------------------------------PLHNACSYGHYEVA 91
Query: 438 RVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAY 496
+LVK GA + FT +H AA G ++ + + A + K + G T L +
Sbjct: 92 ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA-DPTKKNRDGNTPLDLVKD 150
Query: 497 FGQADTVRELLSH 509
G D L
Sbjct: 151 -GDTDIQDLLRGD 162
Score = 102 bits (256), Expect = 2e-25
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 29/188 (15%)
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
+ E L AA+ G ++ L + + R+
Sbjct: 5 NSEADRQLLEAAKAGDVETVK----------------------KLCTVQSVNCRDIEGRQ 42
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
TPLH AA ++ V + LL GA + A D G P+H A EVA++ + H ++V
Sbjct: 43 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVV 101
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVV 437
T H AA +G + + L++ G + +NR TPL L + G ++
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQ---HGADPTKKNR-DGNTPLDLVKD-GDTDIQ 156
Query: 438 RVLVKAGA 445
+L A
Sbjct: 157 DLLRGDAA 164
Score = 100 bits (251), Expect = 8e-25
Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 20/174 (11%)
Query: 383 KDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLV 441
+ + AA G V +++L V ++TPL AA +VV L+
Sbjct: 6 SEADRQLLEAAKAGDVETVKKLC--TVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLL 62
Query: 442 KAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQA 500
+ GA ++K G +H A GH +V E + A V T LH AA G+
Sbjct: 63 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAAKGKY 121
Query: 501 DTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLN 554
+ + LL H GA + G TPL L G+ ++ LL
Sbjct: 122 EICKLLLQH-----------GADP--TKKNRDGNTPLDLVKD-GDTDIQDLLRG 161
Score = 94.0 bits (235), Expect = 1e-22
Identities = 38/184 (20%), Positives = 57/184 (30%), Gaps = 42/184 (22%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRC-ALM-------------L 56
+ L AA+ D + + N +G + L L
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSV-----NCRD--IEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 57 LKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKA 116
L+ GA + G P+H A YG+ +LL++ G + TPLH A+ K
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121
Query: 117 EVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLL 176
E+ LL+Q + N DG + L D LL
Sbjct: 122 EICKLLLQHGADP---------TKKNRDGNTPLDLV------------KDGDTDIQDLLR 160
Query: 177 EAGA 180
A
Sbjct: 161 GDAA 164
Score = 92.1 bits (230), Expect = 5e-22
Identities = 46/244 (18%), Positives = 72/244 (29%), Gaps = 83/244 (34%)
Query: 99 KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
N + L A++ E V L VQ+++ + ++ LH+A
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCT-VQSVN-------CRDIEGRQSTPLHFAAG---- 51
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
V+ LL+ GADV
Sbjct: 52 ----YNRVS---VVEYLLQHGADV------------------------------------ 68
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVS 278
+ + G PL AC+ GH E+ ++ + A V+V D + LH AA G ++
Sbjct: 69 ----HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 279 SGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
L+ H A TPL L + G + LL
Sbjct: 125 K----------------------LLL-QHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLR 160
Query: 339 DLGA 342
A
Sbjct: 161 GDAA 164
Score = 92.1 bits (230), Expect = 5e-22
Identities = 38/144 (26%), Positives = 55/144 (38%), Gaps = 17/144 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKA-GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
L AA+ G V+ L +C D T +H AA V+E + A +V
Sbjct: 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA-DV 68
Query: 482 YSK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLA 540
++K K G+ LH A +G + L+ H GA + TPLH A
Sbjct: 69 HAKDKGGLVPLHNACSYGHYEVAELLVKH-----------GAVV--NVADLWKFTPLHEA 115
Query: 541 AYSGNENVVRLLLNSAGVQVDAQT 564
A G + +LLL G +
Sbjct: 116 AAKGKYEICKLLL-QHGADPTKKN 138
Score = 77.0 bits (191), Expect = 7e-17
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 444 GASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADT 502
GA N + AA+ G + ++++ + +++N T LH AA + +
Sbjct: 1 GA---MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 503 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDA 562
V LL H GA + G+ PLH A G+ V LL+ G V+
Sbjct: 58 VEYLLQH-----------GADV--HAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNV 103
Query: 563 QT 564
Sbjct: 104 AD 105
Score = 35.1 bits (82), Expect = 0.022
Identities = 20/86 (23%), Positives = 25/86 (29%), Gaps = 28/86 (32%)
Query: 8 KLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPNLTT 67
+ TPLH AA I +LL+ GA P
Sbjct: 106 LWKFTPLHEAAAK-----------------GKYEICK----------LLLQHGADPTKKN 138
Query: 68 DDGQTPVHAAAKYGNLVTLQLLLEDG 93
DG TP+ G+ LL D
Sbjct: 139 RDGNTPLDLVK-DGDTDIQDLLRGDA 163
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 102 bits (258), Expect = 4e-26
Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 37/162 (22%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+T LH+A+ G + + LL G+ + D G P+H A + +V ++ L H +LV
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHKALV 69
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
T + +PL AA+ GH ++V+
Sbjct: 70 NTTGYQND------------------------------------SPLHDAAKNGHVDIVK 93
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALN 480
+L+ GAS N G V +L +++ +
Sbjct: 94 LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135
Score = 101 bits (255), Expect = 1e-25
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
G T L IA +G + V +L N + +V D G + LH A HG+LKV
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE--------- 60
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ H A+++ + +PLH AA+ G + + KLLL GAS +A +
Sbjct: 61 -------------LLL-QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLR 372
G +P+ + + + +
Sbjct: 107 IFGLRPVDYTDDESMKSLLLLPEK 130
Score = 98.6 bits (247), Expect = 1e-24
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 22/147 (14%)
Query: 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
G P T G+T +H A+ G++ +++ LL++G DP K+ G TPLH A + +VV
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 120 DLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAG 179
+LL+Q VN+ S LH A + + VKLLL G
Sbjct: 60 ELLLQHKAL---------VNTTGYQNDSPLHDAAKNGHVD-----------IVKLLLSYG 99
Query: 180 ADVSLQTKQNHETAFHYCAVAGNNDVL 206
A + Y +L
Sbjct: 100 ASRNAVNIFGL-RPVDYTDDESMKSLL 125
Score = 97.5 bits (244), Expect = 3e-24
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
T L +A+ G V L++ G+ ++ G+T +H A +GH +V+E + KA V
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA-LVN 70
Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+ + LH AA G D V+ LLS+ GAS + G+ P+
Sbjct: 71 TTGYQNDSPLHDAAKNGHVDIVKLLLSY-----------GASR--NAVNIFGLRPVDYTD 117
Query: 542 YSGNENVVRLLLNSA 556
++++ L +
Sbjct: 118 DESMKSLLLLPEKNE 132
Score = 88.2 bits (220), Expect = 5e-21
Identities = 33/179 (18%), Positives = 53/179 (29%), Gaps = 60/179 (33%)
Query: 99 KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
N GET LH+AS V+ L+Q + N + G + LH AC
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSD---------PNVKDHAGWTPLHEACNHGHL 56
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
+ V+LLL+ A V
Sbjct: 57 K-----------VVELLLQHKALV------------------------------------ 69
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
N +PL A GH+++V +L+ A + + G + + +
Sbjct: 70 ----NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL 124
Score = 84.4 bits (210), Expect = 1e-19
Identities = 31/148 (20%), Positives = 57/148 (38%), Gaps = 24/148 (16%)
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
+ G + LH+A+ G + + L + NG + ++
Sbjct: 7 NHRGETLLHIASIKGDIPSV--EYL--------------LQNG-------SDPNVKDHAG 43
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
TPLH A G L+V +LLL A ++ T Q P+H AA+N ++ ++ L ++ +
Sbjct: 44 WTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASR 102
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMK 406
A G + ++ K
Sbjct: 103 NAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Score = 84.0 bits (209), Expect = 2e-19
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 34/134 (25%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGD 50
ET LHIA+ V+ LL++G+ PN+ + A V+
Sbjct: 11 ETLLHIASIKGDIPSVE-------YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE--- 60
Query: 51 RCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
+LL+ A N T +P+H AAK G++ ++LLL G N G P+
Sbjct: 61 ----LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116
Query: 111 SRNCKAEVVDLLIQ 124
++ L +
Sbjct: 117 DDESMKSLLLLPEK 130
Score = 79.8 bits (198), Expect = 5e-18
Identities = 39/206 (18%), Positives = 66/206 (32%), Gaps = 75/206 (36%)
Query: 142 NEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAG 201
N G + LH A K D +V+ LL+ G+D
Sbjct: 7 NHRGETLLHIASI-----------KGDIPSVEYLLQNGSDP------------------- 36
Query: 202 NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE 261
N + GWTPL ACN GH+++V +L + A V+ +
Sbjct: 37 ---------------------NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ 75
Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
S LH AA++G++ + L+ + A + + + P
Sbjct: 76 NDSPLHDAAKNGHVDIVK----------------------LLL-SYGASRNAVNIFGLRP 112
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDAT 347
+ + + L S A+
Sbjct: 113 VDYTDDESMKSLLLLPEK-NESSSAS 137
Score = 77.1 bits (191), Expect = 4e-17
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 16/117 (13%)
Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
N G T +H+A+ G +E + + + + K G T LH A G V LL H
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
A +PLH AA +G+ ++V+LLL S G +A
Sbjct: 66 -----------KALV--NTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASRNAVNIF 108
Score = 59.7 bits (146), Expect = 4e-11
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 480 NVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
+ ++ G T LH+A+ G +V LL + G+ + +G TPLH
Sbjct: 3 DPFTNHRGETLLHIASIKGDIPSVEYLLQN-----------GSDP--NVKDHAGWTPLHE 49
Query: 540 AAYSGNENVVRLLLNSAGVQVDAQ 563
A G+ VV LLL V+
Sbjct: 50 ACNHGHLKVVELLL-QHKALVNTT 72
Score = 52.0 bits (126), Expect = 2e-08
Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 34/103 (33%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGD 50
TPLH A V+ +LL+ A N T AA+ VK
Sbjct: 44 WTPLHEACNHGHLKVVE-------LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVK--- 93
Query: 51 RCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
+LL GA N G PV L L ++
Sbjct: 94 ----LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 100 bits (253), Expect = 1e-25
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 16/136 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA GH VV++L++AGA ++K G T +HLAA+NGH +V++ + + A +V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVN 62
Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+K K G T LH+AA G + V+ LL GA ++G TPLHLAA
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GADV--NAKDKNGRTPLHLAA 109
Query: 542 YSGNENVVRLLLNSAG 557
+G+ VV+LLL AG
Sbjct: 110 RNGHLEVVKLLL-EAG 124
Score = 99.7 bits (250), Expect = 4e-25
Identities = 53/148 (35%), Positives = 79/148 (53%), Gaps = 25/148 (16%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK--------- 52
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ + A ++ +TPLHLAA G L+V KLLL+ GA ++A D
Sbjct: 53 -------------LLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLR--AH 374
G+ P+H+AA+N EV ++ L A+
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 99.0 bits (248), Expect = 7e-25
Identities = 56/153 (36%), Positives = 80/153 (52%), Gaps = 37/153 (24%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L + V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
A K+G TPL LAA GH VV+
Sbjct: 62 NAKDKNGR------------------------------------TPLHLAARNGHLEVVK 85
Query: 439 VLVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
+L++AGA ++K G T +HLAA+NGH +V++
Sbjct: 86 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Score = 95.5 bits (239), Expect = 1e-23
Identities = 59/185 (31%), Positives = 83/185 (44%), Gaps = 60/185 (32%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
+G+TP+H AA+ G+L ++LLLE G D K+K G TPLHLA+RN EVV LL++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
+ N+ +++G + LH A + E VKLLLEAGADV
Sbjct: 61 V---------NAKDKNGRTPLHLAARNGHLE-----------VVKLLLEAGADV------ 94
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTM 248
N + G TPL +A GH+E+V +
Sbjct: 95 ----------------------------------NAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 249 LNNHA 253
L A
Sbjct: 121 LEAGA 125
Score = 85.9 bits (214), Expect = 2e-20
Identities = 49/128 (38%), Positives = 80/128 (62%), Gaps = 7/128 (5%)
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 442
+G T H+AA G + V++ L++ +G ++A+++ TPL LAA GH VV++L++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE 56
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 501
AGA ++K G T +HLAA+NGH +V++ + + A +V +K K G T LH+AA G +
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLE 115
Query: 502 TVRELLSH 509
V+ LL
Sbjct: 116 VVKLLLEA 123
Score = 83.5 bits (208), Expect = 2e-19
Identities = 54/133 (40%), Positives = 73/133 (54%), Gaps = 34/133 (25%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGD 50
TPLH+AAR VK +LL++GA N + +AAR VK
Sbjct: 3 RTPLHLAARNGHLEVVK-------LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK--- 52
Query: 51 RCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
+LL++GA N +G+TP+H AA+ G+L ++LLLE G D K+K G TPLHLA
Sbjct: 53 ----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Query: 111 SRNCKAEVVDLLI 123
+RN EVV LL+
Sbjct: 109 ARNGHLEVVKLLL 121
Score = 77.0 bits (191), Expect = 4e-17
Identities = 58/199 (29%), Positives = 79/199 (39%), Gaps = 74/199 (37%)
Query: 144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNN 203
+G + LH A + E VKLLLEAGADV
Sbjct: 1 NGRTPLHLAARNGHLE-----------VVKLLLEAGADV--------------------- 28
Query: 204 DVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGR 263
N + G TPL +A GH+E+V +L A V+ D+ GR
Sbjct: 29 -------------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 69
Query: 264 SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLH 323
+ LHLAA +G+L+V L+ + A ++ +TPLH
Sbjct: 70 TPLHLAARNGHLEVVK----------------------LLL-EAGADVNAKDKNGRTPLH 106
Query: 324 LAAEAGQLQVCKLLLDLGA 342
LAA G L+V KLLL+ GA
Sbjct: 107 LAARNGHLEVVKLLLEAGA 125
Score = 60.8 bits (149), Expect = 1e-11
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G T LH+AA G + V+ LL GA ++G TPLHLAA +G+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-----------GADV--NAKDKNGRTPLHLAARNGHL 48
Query: 547 NVVRLLLNSAGVQVDAQT 564
VV+LLL AG V+A+
Sbjct: 49 EVVKLLL-EAGADVNAKD 65
Score = 50.8 bits (123), Expect = 4e-08
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 34/103 (33%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGD 50
TPLH+AAR VK +LL++GA N + +AAR VK
Sbjct: 36 RTPLHLAARNGHLEVVK-------LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK--- 85
Query: 51 RCALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
+LL++GA N +G+TP+H AA+ G+L ++LLLE G
Sbjct: 86 ----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 42.3 bits (101), Expect = 4e-05
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
+G TPLHLAA +G+ VV+LLL AG V+A+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKD 32
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 100 bits (252), Expect = 2e-25
Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 37/168 (22%)
Query: 311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIF 370
I +L L AA GQ++ + LL+ GA +A + G++PI V + +VA+
Sbjct: 5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA-QVAE-L 62
Query: 371 LRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAE 430
L H + T P+ AA
Sbjct: 63 LLLHGAEPNCADPATLT-----------------------------------RPVHDAAR 87
Query: 431 GGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
G + + VL +AGA + G V LA + GH + + ++
Sbjct: 88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 96.4 bits (241), Expect = 7e-24
Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 25/152 (16%)
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKS 282
+ L A RG +E V +L A + ++ GR + + G +V+
Sbjct: 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAE--- 61
Query: 283 LKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQT-PLHLAAEAGQLQVCKLLLDLG 341
L+ H A + T P+H AA G L +L G
Sbjct: 62 -------------------LLL-LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAG 101
Query: 342 ASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 373
A +D D G+ P+ +A + ++A+ A
Sbjct: 102 ARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 92.9 bits (232), Expect = 1e-22
Identities = 30/195 (15%), Positives = 57/195 (29%), Gaps = 62/195 (31%)
Query: 60 GAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVV 119
G ++ + AA G + T++ LLE G DP N+ G P+ + +V
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA-QVA 60
Query: 120 DLLIQFVQNISQEKVLEYVNSVNEDGA-SALHYACQVTKAELIPITSKEDQKTVKLLLEA 178
+LL+ N + +H A + + T+ +L A
Sbjct: 61 ELLLLHGAE---------PNCADPATLTRPVHDAAREGFLD-----------TLVVLHRA 100
Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
GA + + + G P+ +A
Sbjct: 101 GARL----------------------------------------DVCDAWGRLPVDLAEE 120
Query: 239 RGHMELVNTMLNNHA 253
+GH ++ +
Sbjct: 121 QGHRDIARYLHAATG 135
Score = 92.1 bits (230), Expect = 2e-22
Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 15/133 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA-LNV 481
L AA G VR L++AGA N+ G + + G QV E + A N
Sbjct: 14 AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC 72
Query: 482 YSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+H AA G DT+ L GA ++ G P+ LA
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLVVLHRA-----------GARL--DVCDAWGRLPVDLAE 119
Query: 542 YSGNENVVRLLLN 554
G+ ++ R L
Sbjct: 120 EQGHRDIARYLHA 132
Score = 86.3 bits (215), Expect = 2e-20
Identities = 30/180 (16%), Positives = 51/180 (28%), Gaps = 62/180 (34%)
Query: 99 KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
+ L A+ + E V L++ + N++N G +
Sbjct: 8 LGGSSDAGLATAAARGQVETVRQLLEAGAD---------PNALNRFGRRPIQVMMM---- 54
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
S + +LLL GA+
Sbjct: 55 -----GSAQ---VAELLLLHGAEP------------------------------------ 70
Query: 219 SKALNKQTSIGWT-PLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
N T P+ A G ++ + + AR+DV D GR + LA E G+ +
Sbjct: 71 ----NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126
Score = 84.4 bits (210), Expect = 1e-19
Identities = 35/194 (18%), Positives = 57/194 (29%), Gaps = 62/194 (31%)
Query: 253 ARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVID 312
+ + + L AA G ++ + L + G A +
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETV--RQL--------------LEAG-------ADPN 39
Query: 313 ILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQ-KPIHVAAQNNFPEVAQIFL 371
L + P+ + G QV +LLL GA + D +P+H AA+ F + +
Sbjct: 40 ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98
Query: 372 RAHPSLVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEG 431
RA + G P+ LA E
Sbjct: 99 RAGAR-LDVCDAWGR------------------------------------LPVDLAEEQ 121
Query: 432 GHANVVRVLVKAGA 445
GH ++ R L A
Sbjct: 122 GHRDIARYLHAATG 135
Score = 84.0 bits (209), Expect = 2e-19
Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 22/128 (17%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGET-PLHLASRN 113
LL++GA PN G+ P+ G+ +LLL G +P + T P+H A+R
Sbjct: 30 QLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAARE 88
Query: 114 CKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVK 173
+ + +L + ++ + G + A + + + +
Sbjct: 89 GFLDTLVVLHRAGAR---------LDVCDAWGRLPVDLAEE-----------QGHRDIAR 128
Query: 174 LLLEAGAD 181
L A D
Sbjct: 129 YLHAATGD 136
Score = 82.5 bits (205), Expect = 6e-19
Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 11 ETPLHIAARVKDGDRCALMLLKSGAGPNLTN--------IAARVKDGDRCALMLLKSGAG 62
+ L AA + LL++GA PN N + + A +LL GA
Sbjct: 13 DAGLATAAARGQVE-TVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAE 69
Query: 63 PNLTTDDGQT-PVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
PN T PVH AA+ G L TL +L G + G P+ LA ++
Sbjct: 70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129
Query: 122 LIQ 124
L
Sbjct: 130 LHA 132
Score = 79.8 bits (198), Expect = 5e-18
Identities = 33/206 (16%), Positives = 56/206 (27%), Gaps = 76/206 (36%)
Query: 138 VNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYC 197
++ + + L A + E TV+ LLEAGAD
Sbjct: 5 IHMLGGSSDAGLATAAARGQVE-----------TVRQLLEAGADP--------------- 38
Query: 198 AVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDV 257
N G P+ + G ++ +L + A +
Sbjct: 39 -------------------------NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC 72
Query: 258 FDQEGR-SALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTL 316
D +H AA G+L ++H A +D+
Sbjct: 73 ADPATLTRPVHDAAREGFLDTLV-----------------------VLHRAGARLDVCDA 109
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGA 342
+ P+ LA E G + + L
Sbjct: 110 WGRLPVDLAEEQGHRDIARYLHAATG 135
Score = 72.1 bits (178), Expect = 2e-15
Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 18/126 (14%)
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 501
+ + AA G + + ++ + A + + + G + V G A
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA-DPNALNRFGRRPIQVMMM-GSAQ 58
Query: 502 TVRELLSHVPGTVKSDPPTGASFLGELGSESGMT-PLHLAAYSGNENVVRLLLNSAGVQV 560
LL H GA + +T P+H AA G + + +L AG ++
Sbjct: 59 VAELLLLH-----------GAEP--NCADPATLTRPVHDAAREGFLDTLVVLH-RAGARL 104
Query: 561 DAQTQE 566
D
Sbjct: 105 DVCDAW 110
Score = 60.9 bits (149), Expect = 2e-11
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 20/97 (20%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LLK 58
P+ + + A +LL GA PN + + L +
Sbjct: 47 RPIQVMMM--GSAQVAELLLLHGAEPNCAD-----PATLTRPVHDAAREGFLDTLVVLHR 99
Query: 59 SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGD 95
+GA ++ G+ PV A + G+ + L GD
Sbjct: 100 AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 99.4 bits (249), Expect = 5e-25
Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 37/152 (24%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
A + G L K + G ++ T + G+KP+H AA E+ + FL + +
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE-FLLLKGADIN 67
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
A K TPL A GH + V++
Sbjct: 68 APDKHHI------------------------------------TPLLSAVYEGHVSCVKL 91
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
L+ GA T + G TA +L+
Sbjct: 92 LLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 93.6 bits (234), Expect = 4e-23
Identities = 31/142 (21%), Positives = 46/142 (32%), Gaps = 23/142 (16%)
Query: 227 SIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHS 286
S+ + A G ++ V + V+ + GR LH AA+ G L++ L+
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI-----LE-- 57
Query: 287 VMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDA 346
FL+ A I+ TPL A G + KLLL GA
Sbjct: 58 ---------------FLL-LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Query: 347 TDDQGQKPIHVAAQNNFPEVAQ 368
G + Q
Sbjct: 102 KGPDGLTAFEATDNQAIKALLQ 123
Score = 90.5 bits (226), Expect = 6e-22
Identities = 28/177 (15%), Positives = 48/177 (27%), Gaps = 60/177 (33%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
A K G+L ++ + G D + G PLH A+ + E+++ L+ +
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
+N+ ++ + L A VKLLL GAD
Sbjct: 66 ---------INAPDKHHITPLLSAVYEGHVS-----------CVKLLLSKGADK------ 99
Query: 189 NHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELV 245
+ G T N+ L+
Sbjct: 100 ----------------------------------TVKGPDGLTAFEATDNQAIKALL 122
Score = 89.8 bits (224), Expect = 9e-22
Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 15/129 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
A + G + V+ V G + G +H AA G ++LE + A ++
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-DIN 67
Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+ K +T L A Y G V+ LLS GA + G+T
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSK-----------GADK--TVKGPDGLTAFEATD 114
Query: 542 YSGNENVVR 550
+ +++
Sbjct: 115 NQAIKALLQ 123
Score = 86.3 bits (215), Expect = 2e-20
Identities = 31/179 (17%), Positives = 48/179 (26%), Gaps = 60/179 (33%)
Query: 99 KNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKA 158
+ + A +N + V + ++ VN E G LHYA +
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGED---------VNRTLEGGRKPLHYAADCGQL 53
Query: 159 ELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEI 218
E ++ LL GAD+
Sbjct: 54 E-----------ILEFLLLKGADI------------------------------------ 66
Query: 219 SKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
N TPLL A GH+ V +L+ A V +G +A +
Sbjct: 67 ----NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121
Score = 80.9 bits (201), Expect = 1e-18
Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 9/99 (9%)
Query: 56 LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCK 115
+ G N T + G+ P+H AA G L L+ LL G D +K TPL A
Sbjct: 26 YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85
Query: 116 AEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQ 154
V LL+ + DG +A
Sbjct: 86 VSCVKLLLSKGAD---------KTVKGPDGLTAFEATDN 115
Score = 77.4 bits (192), Expect = 2e-17
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 16/117 (13%)
Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
A +NG +++ + +V + G LH AA GQ + + LL
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGE-DVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
GA + +TPL A Y G+ + V+LLL S G + +
Sbjct: 63 -----------GADI--NAPDKHHITPLLSAVYEGHVSCVKLLL-SKGADKTVKGPD 105
Score = 77.1 bits (191), Expect = 3e-17
Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 24/141 (17%)
Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
A ++G L K + G ++ + P
Sbjct: 7 CDKEFMWALKNGDLDEV--KDY--------------VAKG-------EDVNRTLEGGRKP 43
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
LH AA+ GQL++ + LL GA I+A D P+ A ++ L + + T
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL-SKGADKTVK 102
Query: 382 TKDGNTCAHIAAMQGSVGVIE 402
DG T Q +++
Sbjct: 103 GPDGLTAFEATDNQAIKALLQ 123
Score = 77.1 bits (191), Expect = 3e-17
Identities = 26/128 (20%), Positives = 38/128 (29%), Gaps = 32/128 (25%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
+ A + VK + G N T + G R L
Sbjct: 8 DKEFMWALKNGDLDEVK-------DYVAKGEDVNRTL-----EGG-RKPLHYAADCGQLE 54
Query: 56 ----LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLAS 111
LL GA N TP+ +A G++ ++LLL G D K G T
Sbjct: 55 ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114
Query: 112 RNCKAEVV 119
++
Sbjct: 115 NQAIKALL 122
Score = 64.3 bits (158), Expect = 9e-13
Identities = 23/195 (11%), Positives = 43/195 (22%), Gaps = 74/195 (37%)
Query: 141 VNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVA 200
+ +A + D VK + G DV
Sbjct: 3 LGSMCDKEFMWALK-----------NGDLDEVKDYVAKGEDV------------------ 33
Query: 201 GNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQ 260
N+ G PL A + G +E++ +L A ++ D+
Sbjct: 34 ----------------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 71
Query: 261 EGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQT 320
+ L A G++ L+ A + T
Sbjct: 72 HHITPLLSAVYEGHVSCVK----------------------LLL-SKGADKTVKGPDGLT 108
Query: 321 PLHLAAEAGQLQVCK 335
+ +
Sbjct: 109 AFEATDNQAIKALLQ 123
Score = 43.5 bits (104), Expect = 2e-05
Identities = 22/95 (23%), Positives = 27/95 (28%), Gaps = 32/95 (33%)
Query: 12 TPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM---------- 55
PLH AA ++ LL GA N + K L+
Sbjct: 42 KPLHYAADCGQLEILE-------FLLLKGADINAPD-----KHH-ITPLLSAVYEGHVSC 88
Query: 56 ---LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQ 87
LL GA + DG T A LQ
Sbjct: 89 VKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 98.6 bits (246), Expect = 5e-24
Identities = 30/197 (15%), Positives = 61/197 (30%), Gaps = 23/197 (11%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDP---MYKNKIGETPLHLASRNCKAEVVDLLIQF 125
V AAA G L E G + + K+ I L + + ++ LI
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN- 63
Query: 126 VQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQ 185
+ + S ++G + Q ++ + K+ LE GAD++
Sbjct: 64 -KGAD-------IKSRTKEGTTLFFPLFQGGGNDIT-----GTTELCKIFLEKGADITAL 110
Query: 186 TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKA---LNKQTSIGWTPLLIACNRGHM 242
K ++ D + + S++ L + G T L
Sbjct: 111 YK-PYKIVVFKNIFNYFVDENE--MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP 167
Query: 243 ELVNTMLNNHARVDVFD 259
+ M + + ++ +
Sbjct: 168 IALKMMEDYIKKYNLKE 184
Score = 89.3 bits (222), Expect = 8e-21
Identities = 25/199 (12%), Positives = 53/199 (26%), Gaps = 31/199 (15%)
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEA---TPLQLAAEGGHANV 436
+ AAM G+ EL + G + + L+ + +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFE---KGYEDKESVLKSNILYDVLRNNNDEARYKI 57
Query: 437 VRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL-----NVYSK-KLGVTA 490
L+ GA K G T Q G N + K ++ + K
Sbjct: 58 SMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV 117
Query: 491 LHVAAYFGQADT------VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSG 544
+ + D + + S +G + + G+T L
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQ----------SGLQL--LIKDKWGLTALEFVKRCQ 165
Query: 545 NENVVRLLLNSAGVQVDAQ 563
++++ + + +
Sbjct: 166 KPIALKMME-DYIKKYNLK 183
Score = 89.3 bits (222), Expect = 8e-21
Identities = 23/219 (10%), Positives = 51/219 (23%), Gaps = 51/219 (23%)
Query: 144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNN 203
+ A + L E G + + ++ Y + NN
Sbjct: 5 SEYRTVSAAAM-----------LGTYEDFLELFEKGYED---KESVLKSNILYDVLRNNN 50
Query: 204 DVLTGMLEQMSGTEISKAL-------NKQTSIGWTPLLIACNRGHMELVNTM------LN 250
+ +IS L +T G T G ++ T L
Sbjct: 51 --------DEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102
Query: 251 NHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAV 310
A + + + + + ++ + L +
Sbjct: 103 KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK----------------LIFSQSGLQ 146
Query: 311 IDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDD 349
+ I T L + K++ D + ++
Sbjct: 147 LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
Score = 89.0 bits (221), Expect = 1e-20
Identities = 21/193 (10%), Positives = 53/193 (27%), Gaps = 27/193 (13%)
Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNT 247
+ A+ G + + E+ G E K +++I + L + ++
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEK--GYED-KESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 248 MLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDH 307
++N A + +EG + + G ++ L + +
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCK----------------IFL-EK 103
Query: 308 AAVIDILTLRKQTPLHLAAEAGQLQVCK-------LLLDLGASIDATDDQGQKPIHVAAQ 360
A I L + + + + + G + D G + +
Sbjct: 104 GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163
Query: 361 NNFPEVAQIFLRA 373
P ++
Sbjct: 164 CQKPIALKMMEDY 176
Score = 87.0 bits (216), Expect = 5e-20
Identities = 22/227 (9%), Positives = 53/227 (23%), Gaps = 64/227 (28%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
+ + A G E + + + +S +
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDV------------------ 45
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L + + ++ L++ GA I +
Sbjct: 46 ---------------------------------LRNNNDEARYKISMFLINKGADIKSRT 72
Query: 349 DQGQKPIHVAAQNNFPEVAQIFLRAHPSL-----VTATTKDGNTCAHIAAMQGSVGVIEE 403
+G Q ++ L +TA K V E
Sbjct: 73 KEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEM 132
Query: 404 L----MKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVKAGA 445
+ + F +SG+ + +++ T L+ ++++
Sbjct: 133 IPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDYIK 178
Score = 72.4 bits (178), Expect = 5e-15
Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 23/137 (16%)
Query: 10 RETPLHIAARVKDGDRCALM---LLKSGAGPNLTN--------IAAR-----VKDGDRCA 53
+ L+ R + + + L+ GA + +
Sbjct: 38 KSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELC 97
Query: 54 LMLLKSGAGPNLTTDDGQTPVHAAAKYGNL-------VTLQLLLEDGGDPMYKNKIGETP 106
+ L+ GA + V + + + + G + K+K G T
Sbjct: 98 KIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157
Query: 107 LHLASRNCKAEVVDLLI 123
L R K + ++
Sbjct: 158 LEFVKRCQKPIALKMME 174
Score = 56.6 bits (137), Expect = 2e-09
Identities = 11/110 (10%), Positives = 26/110 (23%), Gaps = 19/110 (17%)
Query: 11 ETPLHIAAR-----VKDGDRCALMLLKSGAGPNLTN--------IAAR------VKDGDR 51
T + + + L+ GA +
Sbjct: 76 TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL 135
Query: 52 CALMLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNK 101
L+ +SG + G T + + + L+++ + K
Sbjct: 136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 94.0 bits (235), Expect = 3e-23
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 21/135 (15%)
Query: 62 GPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDL 121
G + DG TP+H AAK G+ ++ LL G D ++K G TPLHLA++N AE+V L
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 122 LIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGAD 181
L+ ++ N+ ++DG + H A + E VKLL GAD
Sbjct: 61 LLAKGADV---------NARSKDGNTPEHLAKKNGHHE-----------IVKLLDAKGAD 100
Query: 182 VSLQTKQNHETAFHY 196
V+ ++ H+
Sbjct: 101 VNARSW-GSSHHHHH 114
Score = 82.0 bits (204), Expect = 5e-19
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 37/141 (26%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
TPLH AA+ G + K LL GA ++A G P+H+AA+N E+ ++ L A + V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADV 68
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVR 438
A +KDGN TP LA + GH +V+
Sbjct: 69 NARSKDGN------------------------------------TPEHLAKKNGHHEIVK 92
Query: 439 VLVKAGASCTDENKTGFTAVH 459
+L GA + H
Sbjct: 93 LLDAKGADVNARSWGSSHHHH 113
Score = 81.3 bits (202), Expect = 7e-19
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 23/128 (17%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
G TPL A GH E V +L+ A V+ ++G + LHLAA++G+ ++
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK--------- 59
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATD 348
L+ A ++ + TP HLA + G ++ KLL GA ++A
Sbjct: 60 -------------LLL-AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Query: 349 DQGQKPIH 356
H
Sbjct: 106 WGSSHHHH 113
Score = 79.7 bits (198), Expect = 3e-18
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL GA N + DG TP+H AAK G+ ++LLL G D ++K G TP HLA +N
Sbjct: 27 KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG 86
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHY 151
E+V LL ++ N+ + + H+
Sbjct: 87 HHEIVKLLDAKGADV---------NARSWGSSHHHHH 114
Score = 78.6 bits (195), Expect = 7e-18
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 16/115 (13%)
Query: 451 NKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSH 509
+K G T +H AA+NGH + ++++ S A +V ++ K G T LH+AA G A+ V+ LL+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 510 VPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
GA S+ G TP HLA +G+ +V+LL + G V+A++
Sbjct: 65 -----------GADV--NARSKDGNTPEHLAKKNGHHEIVKLLD-AKGADVNARS 105
Score = 75.9 bits (188), Expect = 6e-17
Identities = 42/171 (24%), Positives = 60/171 (35%), Gaps = 60/171 (35%)
Query: 97 MYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVT 156
M+ +K G TPLH A++N AE V L+ ++ N+ ++DG + LH A +
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---------NARSKDGNTPLHLAAKNG 53
Query: 157 KAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGT 216
AE VKLLL GADV
Sbjct: 54 HAE-----------IVKLLLAKGADV---------------------------------- 68
Query: 217 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALH 267
N ++ G TP +A GH E+V + A V+ H
Sbjct: 69 ------NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 74.7 bits (185), Expect = 1e-16
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 24/135 (17%)
Query: 256 DVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILT 315
++G + LH AA++G+ + L+ A ++ +
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVK----------------------KLL-SKGADVNARS 39
Query: 316 LRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHP 375
TPLHLAA+ G ++ KLLL GA ++A G P H+A +N E+ ++ A
Sbjct: 40 KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD-AKG 98
Query: 376 SLVTATTKDGNTCAH 390
+ V A + + H
Sbjct: 99 ADVNARSWGSSHHHH 113
Score = 71.6 bits (177), Expect = 2e-15
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVL 440
+KDGNT H AA G +++L+ G ++AR++ TPL LAA+ GHA +V++L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLS---KGADVNARSK-DGNTPLHLAAKNGHAEIVKLL 61
Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALH 492
+ GA +K G T HLA +NGH+++++ + + A +V ++ H
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA-DVNARSWGSSHHHH 113
Score = 61.6 bits (151), Expect = 6e-12
Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 51/136 (37%)
Query: 142 NEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAG 201
++DG + LH A + AE VK LL GADV
Sbjct: 6 SKDGNTPLHNAAKNGHAE-----------EVKKLLSKGADV------------------- 35
Query: 202 NNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQE 261
N ++ G TPL +A GH E+V +L A V+ ++
Sbjct: 36 ---------------------NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD 74
Query: 262 GRSALHLAAEHGYLKV 277
G + HLA ++G+ ++
Sbjct: 75 GNTPEHLAKKNGHHEI 90
Score = 56.2 bits (137), Expect = 5e-10
Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 39/104 (37%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
TPLH+AA+ VK +LL GA N
Sbjct: 43 NTPLHLAAKNGHAEIVK---------------------------------LLLAKGADVN 69
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLH 108
+ DG TP H A K G+ ++LL G D ++ H
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 41.6 bits (99), Expect = 6e-05
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 528 LGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
GS+ G TPLH AA +G+ V+ LL S G V+A+
Sbjct: 4 WGSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNAR 38
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 92.1 bits (230), Expect = 2e-22
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 26/159 (16%)
Query: 213 MSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEH 272
M G+ + S LL A G + V ++ N A V+ D+ G + L+LA H
Sbjct: 1 MRGSHH---HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH 57
Query: 273 GYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQ 332
G+L++ L+ + A ++ + TPLHLAA G L+
Sbjct: 58 GHLEIVE----------------------VLL-KNGADVNAVDAIGFTPLHLAAFIGHLE 94
Query: 333 VCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFL 371
+ ++LL GA ++A D G+ ++ N ++A+I
Sbjct: 95 IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 90.9 bits (227), Expect = 7e-22
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
L AA G + VR+L+ GA +++ G T ++LA +GH +++E + + A +V
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA-DVN 74
Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAA 541
+ +G T LH+AA+ G + LL H GA + G T ++
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLLKH-----------GADV--NAQDKFGKTAFDISI 121
Query: 542 YSGNENVVRLLL 553
+GNE++ +L
Sbjct: 122 GNGNEDLAEILQ 133
Score = 88.6 bits (221), Expect = 3e-21
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 37/152 (24%)
Query: 320 TPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVT 379
L AA AGQ ++L+ GA ++A D+ G P+++A + E+ ++ L + + V
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADVN 74
Query: 380 ATTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
A G TPL LAA GH + V
Sbjct: 75 AVDAIGF------------------------------------TPLHLAAFIGHLEIAEV 98
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLE 471
L+K GA ++K G TA ++ NG+ + E
Sbjct: 99 LLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130
Score = 85.5 bits (213), Expect = 5e-20
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 442
D AA G + LM +G ++A++ TPL LA GH +V VL+K
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMA---NGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLK 68
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQAD 501
GA + GFT +HLAA GH ++ E + A +V ++ K G TA ++ G D
Sbjct: 69 NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA-DVNAQDKFGKTAFDISIGNGNED 127
Query: 502 TVRELLSH 509
L
Sbjct: 128 LAEILQKL 135
Score = 84.4 bits (210), Expect = 1e-19
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 21/137 (15%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
D + AA+ G +++L+ +G D K++ G TPL+LA+ + E+V++L++ +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQ 188
+ N+V+ G + LH A + E ++LL+ GADV+ Q K
Sbjct: 73 V---------NAVDAIGFTPLHLAAFIGHLE-----------IAEVLLKHGADVNAQDK- 111
Query: 189 NHETAFHYCAVAGNNDV 205
+TAF GN D+
Sbjct: 112 FGKTAFDISIGNGNEDL 128
Score = 78.6 bits (195), Expect = 1e-17
Identities = 35/175 (20%), Positives = 64/175 (36%), Gaps = 60/175 (34%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
L A+R + + V +L+ ++ N+ +E G + L+ A
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV---------NAKDEYGLTPLYLATA-------- 56
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
E V++LL+ GADV
Sbjct: 57 HGHLE---IVEVLLKNGADV---------------------------------------- 73
Query: 223 NKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
N +IG+TPL +A GH+E+ +L + A V+ D+ G++A ++ +G +
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Score = 76.7 bits (190), Expect = 5e-17
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 20/125 (16%)
Query: 12 TPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM-------------LLK 58
L AAR D +L+ +GA ++ A+ + G L LLK
Sbjct: 16 KKLLEAAR-AGQDDEVRILMANGA-----DVNAKDEYG-LTPLYLATAHGHLEIVEVLLK 68
Query: 59 SGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEV 118
+GA N G TP+H AA G+L ++LL+ G D ++K G+T ++ N ++
Sbjct: 69 NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Query: 119 VDLLI 123
++L
Sbjct: 129 AEILQ 133
Score = 73.6 bits (182), Expect = 6e-16
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 24/147 (16%)
Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
L AA G L+ + A ++ TP
Sbjct: 14 LGKKLLEAARAGQDDEVR----------------------ILM-ANGADVNAKDEYGLTP 50
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTAT 381
L+LA G L++ ++LL GA ++A D G P+H+AA E+A+ L H + V A
Sbjct: 51 LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAE-VLLKHGADVNAQ 109
Query: 382 TKDGNTCAHIAAMQGSVGVIEELMKFD 408
K G T I+ G+ + E L K +
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 65.1 bits (160), Expect = 6e-13
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 16/111 (14%)
Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPG 512
+ AA+ G + + + ++ A +V +K + G+T L++A G + V LL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGA-DVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--- 69
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQ 563
GA G TPLHLAA+ G+ + +LL G V+AQ
Sbjct: 70 --------GADV--NAVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADVNAQ 109
Score = 64.7 bits (159), Expect = 9e-13
Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 29/160 (18%)
Query: 179 GADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACN 238
G+ + A AG +D + ++ G ++ N + G TPL +A
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMAN--GADV----NAKDEYGLTPLYLATA 56
Query: 239 RGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNII 298
GH+E+V +L N A V+ D G + LHLAA G+L+++
Sbjct: 57 HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAE------------------- 97
Query: 299 PNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLL 338
L+ H A ++ +T ++ G + ++L
Sbjct: 98 ---VLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 44.7 bits (107), Expect = 7e-06
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 32/100 (32%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM--------- 55
TPL++A V+ +LLK+GA ++ A G L
Sbjct: 48 LTPLYLATAHGHLEIVE-------VLLKNGA-----DVNAVDAIG-FTPLHLAAFIGHLE 94
Query: 56 ----LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLE 91
LLK GA N G+T + GN ++L +
Sbjct: 95 IAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 81.1 bits (201), Expect = 8e-19
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 18/126 (14%)
Query: 428 AAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KL 486
+ H + LV G+ + AA+ G + + + ++ A +V +K K
Sbjct: 1 GSSHHHHHHSSGLVPRGS---HMGSDLGKKLLEAARAGQDDEVRILMANGA-DVAAKDKN 56
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G T LH+AA G + V+ LL GA + + G T ++ +GNE
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEA-----------GADVXAQ--DKFGKTAFDISIDNGNE 103
Query: 547 NVVRLL 552
++ +L
Sbjct: 104 DLAEIL 109
Score = 74.9 bits (185), Expect = 1e-16
Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 40/150 (26%)
Query: 325 AAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKD 384
+ L+ G+ + + K + AA+ + +I + A+ + V A K+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKN 56
Query: 385 GNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAG 444
G+T PL LAA GH VV++L++AG
Sbjct: 57 GST------------------------------------PLHLAARNGHLEVVKLLLEAG 80
Query: 445 ASCTDENKTGFTAVHLAAQNGHNQVLEEMR 474
A ++K G TA ++ NG+ + E ++
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 72.2 bits (178), Expect = 1e-15
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
L AA AGQ ++L+ GA + A D G P+H+AA+N EV + L + V
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK-LLLEAGADV 83
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEEL 404
A K G T I+ G+ + E L
Sbjct: 84 XAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 71.8 bits (177), Expect = 1e-15
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 24/130 (18%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLE 136
+ + + L+ G L A+R + + V +L+ ++
Sbjct: 1 GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADV------- 50
Query: 137 YVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHY 196
+ +++G++ LH A + E VKLLLEAGADV Q K +TAF
Sbjct: 51 --AAKDKNGSTPLHLAARNGHLE-----------VVKLLLEAGADVXAQDK-FGKTAFDI 96
Query: 197 CAVAGNNDVL 206
GN D+
Sbjct: 97 SIDNGNEDLA 106
Score = 70.7 bits (174), Expect = 4e-15
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
L+ G+ D + AA+ G +++L+ +G D K+K G TPLHLA+RN
Sbjct: 12 GLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68
Query: 115 KAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPI 163
EVV LL++ ++ + ++ G +A + +L I
Sbjct: 69 HLEVVKLLLEAGADVXAQ---------DKFGKTAFDISIDNGNEDLAEI 108
Score = 68.0 bits (167), Expect = 3e-14
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 392 AAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDEN 451
+ L+ R + + L AA G + VR+L+ GA ++
Sbjct: 1 GSSHHHHHHSSGLV--PRGSHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKD 54
Query: 452 KTGFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVREL 506
K G T +HLAA+NGH +V++ + + A +V ++ K G TA ++ G D L
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEAGA-DVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 64.5 bits (158), Expect = 4e-13
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 461 AAQNGHNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPT 520
+ + H+ + + ++ S L AA GQ D VR L+++
Sbjct: 1 GSSHHHHHHSSGLVPRGS-HMGSD--LGKKLLEAARAGQDDEVRILMAN----------- 46
Query: 521 GASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
GA ++G TPLHLAA +G+ VV+LLL AG V AQ +
Sbjct: 47 GADV--AAKDKNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKF 89
Score = 63.7 bits (156), Expect = 1e-12
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 10/107 (9%)
Query: 171 TVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALNKQTSIGW 230
L+ G+ + + A AG +D + ++ G ++ + G
Sbjct: 9 HSSGLVPRGSHMG----SDLGKKLLEAARAGQDDEVRILMAN--GADV----AAKDKNGS 58
Query: 231 TPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKV 277
TPL +A GH+E+V +L A V D+ G++A ++ ++G +
Sbjct: 59 TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL 105
Score = 61.8 bits (151), Expect = 5e-12
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+L+ +GA +G TP+H AA+ G+L ++LLLE G D ++K G+T ++ N
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG 101
Query: 115 KAEVVDLL 122
++ ++L
Sbjct: 102 NEDLAEIL 109
Score = 28.3 bits (64), Expect = 2.4
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 39/85 (45%)
Query: 11 ETPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
TPLH+AAR VK +LL++GA
Sbjct: 58 STPLHLAARNGHLEVVK---------------------------------LLLEAGADVX 84
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLL 89
G+T + GN ++L
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 80.1 bits (199), Expect = 1e-18
Identities = 45/112 (40%), Positives = 64/112 (57%), Gaps = 20/112 (17%)
Query: 69 DGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQN 128
+G+TP+H AA+ G+L ++LLLE G D K+K G TPLHLA+RN EVV LL++ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 129 ISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGA 180
+ N+ +++G + LH A + E VKLLLEAGA
Sbjct: 61 V---------NAKDKNGRTPLHLAARNGHLE-----------VVKLLLEAGA 92
Score = 78.9 bits (196), Expect = 3e-18
Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 423 TPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNVY 482
TPL LAA GH VV++L++AGA ++K G T +HLAA+NGH +V++ + + A +V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-DVN 62
Query: 483 SK-KLGVTALHVAAYFGQADTVRELLSH 509
+K K G T LH+AA G + V+ LL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 78.6 bits (195), Expect = 4e-18
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
+TPLHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L + V
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61
Query: 379 TATTKDGNTCAHIAAMQGSVGVIEEL 404
A K+G T H+AA G + V++ L
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 73.5 bits (182), Expect = 2e-16
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
+LL++GA N +G+TP+H AA+ G+L ++LLLE G D K+K G TPLHLA+RN
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Query: 115 KAEVVDLLI 123
EVV LL+
Sbjct: 80 HLEVVKLLL 88
Score = 72.4 bits (179), Expect = 5e-16
Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 23/114 (20%)
Query: 229 GWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVM 288
G TPL +A GH+E+V +L A V+ D+ GR+ LHLAA +G+L+V
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK--------- 52
Query: 289 SFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGA 342
L+ + A ++ +TPLHLAA G L+V KLLL+ GA
Sbjct: 53 -------------LLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 71.6 bits (177), Expect = 1e-15
Identities = 42/105 (40%), Positives = 59/105 (56%), Gaps = 16/105 (15%)
Query: 454 GFTAVHLAAQNGHNQVLEEMRSSKALNVYSK-KLGVTALHVAAYFGQADTVRELLSHVPG 512
G T +HLAA+NGH +V++ + + A +V +K K G T LH+AA G + V+ LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 513 TVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAG 557
GA ++G TPLHLAA +G+ VV+LLL AG
Sbjct: 58 --------GADV--NAKDKNGRTPLHLAARNGHLEVVKLLL-EAG 91
Score = 68.9 bits (170), Expect = 8e-15
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 25/115 (21%)
Query: 262 GRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTP 321
GR+ LHLAA +G+L+V L+ + A ++ +TP
Sbjct: 2 GRTPLHLAARNGHLEVVK----------------------LLL-EAGADVNAKDKNGRTP 38
Query: 322 LHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLR--AH 374
LHLAA G L+V KLLL+ GA ++A D G+ P+H+AA+N EV ++ L A+
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 63.5 bits (156), Expect = 7e-13
Identities = 35/89 (39%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 384 DGNTCAHIAAMQGSVGVIEELMKFDRSGV-ISARNRVTEATPLQLAAEGGHANVVRVLVK 442
+G T H+AA G + V++ L++ +G ++A+++ TPL LAA GH VV++L++
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLE 56
Query: 443 AGASCTDENKTGFTAVHLAAQNGHNQVLE 471
AGA ++K G T +HLAA+NGH +V++
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVVK 85
Score = 60.8 bits (149), Expect = 5e-12
Identities = 39/134 (29%), Positives = 54/134 (40%), Gaps = 51/134 (38%)
Query: 144 DGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNN 203
+G + LH A + + VKLLLEAGADV
Sbjct: 1 NGRTPLHLAAR-----------NGHLEVVKLLLEAGADV--------------------- 28
Query: 204 DVLTGMLEQMSGTEISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGR 263
N + G TPL +A GH+E+V +L A V+ D+ GR
Sbjct: 29 -------------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 69
Query: 264 SALHLAAEHGYLKV 277
+ LHLAA +G+L+V
Sbjct: 70 TPLHLAARNGHLEV 83
Score = 58.9 bits (144), Expect = 3e-11
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
G T LH+AA G + V+ LL GA ++G TPLHLAA +G+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-----------GADV--NAKDKNGRTPLHLAARNGHL 48
Query: 547 NVVRLLLNSAGVQVDAQT 564
VV+LLL AG V+A+
Sbjct: 49 EVVKLLL-EAGADVNAKD 65
Score = 52.0 bits (126), Expect = 9e-09
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 32/101 (31%)
Query: 12 TPLHIAAR------VKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALM---------- 55
TPLH+AAR VK +LL++GA ++ A+ K+G R L
Sbjct: 4 TPLHLAARNGHLEVVK-------LLLEAGA-----DVNAKDKNG-RTPLHLAARNGHLEV 50
Query: 56 ---LLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDG 93
LL++GA N +G+TP+H AA+ G+L ++LLLE G
Sbjct: 51 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 41.2 bits (98), Expect = 5e-05
Identities = 18/33 (54%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 532 SGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQT 564
+G TPLHLAA +G+ VV+LLL AG V+A+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKD 32
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 70.8 bits (173), Expect = 9e-14
Identities = 29/124 (23%), Positives = 43/124 (34%), Gaps = 24/124 (19%)
Query: 5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
N + ET LH+A R D ++ L+++ +
Sbjct: 164 NGHEPDETALHLAVRSVDRTSLHIVDF------------------------LVQNSGNLD 199
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
T G T +H N L+LLL N+ GETPL +A R +LL Q
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Query: 125 FVQN 128
+
Sbjct: 260 ALSG 263
Score = 70.8 bits (173), Expect = 1e-13
Identities = 22/128 (17%), Positives = 42/128 (32%), Gaps = 20/128 (15%)
Query: 246 NTMLNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVH 305
L + + +ALHLA + +
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVD--------------------RTSLHIVDFLV 192
Query: 306 DHAAVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPE 365
++ +D T + T LH + KLLL ASI+ ++ G+ P+ +A +
Sbjct: 193 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 252
Query: 366 VAQIFLRA 373
++ +A
Sbjct: 253 CEELLTQA 260
Score = 56.5 bits (136), Expect = 6e-09
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 18/113 (15%)
Query: 103 GETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIP 162
ET LHLA R+ + ++ VQN ++ G++ALHY C AE
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGN------LDKQTGKGSTALHYCCLTDNAEC-- 220
Query: 163 ITSKEDQKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSG 215
+KLLL A + + + ET + + + +SG
Sbjct: 221 ---------LKLLLRGKASIEIANESG-ETPLDIAKRLKHEHCEELLTQALSG 263
Score = 55.8 bits (134), Expect = 1e-08
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 165 SKEDQKTVKLLLEAGADVSLQ-----TKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEIS 219
D + G D++ + + ETA H AV + +++ + S
Sbjct: 139 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHL-AVRSVDRTSLHIVDFLVQN--S 195
Query: 220 KALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGY 274
L+KQT G T L C + E + +L A +++ ++ G + L +A +
Sbjct: 196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 250
Score = 54.6 bits (131), Expect = 3e-08
Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 347 TDDQGQKPIHVAAQNNFPEVAQI--FLRAHPSLVTATTKDGNTCAHIAAMQGSVGVIEEL 404
+ + +H+A ++ I FL + + T G+T H + + ++ L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224
Query: 405 MKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
++ I N E TPL +A H + +L +A
Sbjct: 225 LR--GKASIEIANESGE-TPLDIAKRLKHEHCEELLTQA 260
Score = 52.3 bits (125), Expect = 1e-07
Identities = 15/98 (15%), Positives = 37/98 (37%)
Query: 381 TTKDGNTCAHIAAMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
+ T H+A + + ++ + +T L +A +++L
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224
Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
++ AS N++G T + +A + H E + + +
Sbjct: 225 LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262
Score = 51.5 bits (123), Expect = 2e-07
Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 25/153 (16%)
Query: 416 RNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKT---------GFTAVHLAAQNG- 465
+ A L E + L++A A D + TA+HLA ++
Sbjct: 122 KKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVD 181
Query: 466 --HNQVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGAS 523
+++ + + G TALH A+ ++ LL AS
Sbjct: 182 RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-----------KAS 230
Query: 524 FLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
E+ +ESG TPL +A +E+ LL +
Sbjct: 231 I--EIANESGETPLDIAKRLKHEHCEELLTQAL 261
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 65.4 bits (159), Expect = 7e-12
Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 17/138 (12%)
Query: 8 KLRETPLHIAARVKDGDRCALM-LLKSGAGPNLTNIAARVKDGDRCAL------------ 54
+ P + + + D +++ +G + + L
Sbjct: 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 206
Query: 55 ----MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLA 110
++++G + DG T +H AA Y L+LLL+ N+ GET L +A
Sbjct: 207 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
Query: 111 SRNCKAEVVDLLIQFVQN 128
+ E +LL Q
Sbjct: 267 RKKHHKECEELLEQAQAG 284
Score = 62.3 bits (151), Expect = 8e-11
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 20/125 (16%)
Query: 249 LNNHARVDVFDQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHA 308
LHLA + + S L F++ +
Sbjct: 177 FGQPLPGPDAQAPEELVLHLAVKVA------------NQASLPLVD-------FIIQ-NG 216
Query: 309 AVIDILTLRKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQ 368
+D T LH AA Q KLLL A + ++ G+ + +A + + E +
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 276
Query: 369 IFLRA 373
+ +A
Sbjct: 277 LLEQA 281
Score = 54.2 bits (130), Expect = 3e-08
Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 31/149 (20%)
Query: 73 PVHAAAKYGNLVTLQLLLEDGGDPMYKNKI------GETPLHLASRNCKA---EVVDLLI 123
+ A +L+++ +G D E LHLA + +VD +I
Sbjct: 154 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII 213
Query: 124 QFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVS 183
Q + +++ DG +ALHYA + + +KLLL+ A V
Sbjct: 214 QNGGH---------LDAKAADGNTALHYAALYNQPDC-----------LKLLLKGRALVG 253
Query: 184 LQTKQNHETAFHYCAVAGNNDVLTGMLEQ 212
+ ETA A ++ +LEQ
Sbjct: 254 T-VNEAGETALD-IARKKHHKECEELLEQ 280
Score = 51.9 bits (124), Expect = 2e-07
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 12/117 (10%)
Query: 165 SKEDQKTVKLLLEAGADVSLQTKQNH-----ETAFHYCAVAGNNDVLTGMLEQ--MSGTE 217
D +V G D E H AV N +++ +G
Sbjct: 160 CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLH-LAVKVANQASLPLVDFIIQNGGH 218
Query: 218 ISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVFDQEGRSALHLAAEHGY 274
+ + + + G T L A + + +L A V ++ G +AL +A + +
Sbjct: 219 L----DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 271
Score = 46.9 bits (111), Expect = 9e-06
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 384 DGNTCAHIAAMQG---SVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVL 440
H+A S+ +++ +++ G + A+ T L AA + +++L
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKA-ADGNTALHYAALYNQPDCLKLL 245
Query: 441 VKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKA 478
+K A N+ G TA+ +A + H + E + ++A
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA 283
Score = 43.1 bits (101), Expect = 2e-04
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 446 SCTDENKTGFTAVHLAAQNGHN---QVLEEMRSSKALNVYSKKLGVTALHVAAYFGQADT 502
D +HLA + + +++ + + G TALH AA + Q D
Sbjct: 182 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 241
Query: 503 VRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSA 556
++ LL A +E+G T L +A ++ LL +
Sbjct: 242 LKLLLKG-----------RALV--GTVNEAGETALDIARKKHHKECEELLEQAQ 282
Score = 38.4 bits (89), Expect = 0.005
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 423 TPLQLAAEGGHANVVRV---LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKAL 479
L LA + + + + +++ G + G TA+H AA L+ + +AL
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251
Query: 480 NVYSKKLGVTALHVAAYFGQADTVRELL 507
+ G TAL +A + ELL
Sbjct: 252 VGTVNEAGETALDIARKKHHKECE-ELL 278
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 62.9 bits (152), Expect = 9e-11
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 317 RKQTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPS 376
TPL A A L C+ LL GA+++ D G+ P+H A +A +FL+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 377 LVTATTKDGNTCAHIAAMQGSVGVIEELMKFDRSG 411
+ A +G IA + I L++ +
Sbjct: 294 -LGARDSEGRDPLTIAMETANAD-IVTLLRLAKMR 326
Score = 59.4 bits (143), Expect = 1e-09
Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 25/159 (15%)
Query: 217 EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVDVF--DQEGRSALHLAAEHGY 274
E G + + + + L + A V+ Q+ + L A
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247
Query: 275 LKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRKQTPLHLAAEAGQLQVC 334
L FL+ + A ++ + PLH A G +
Sbjct: 248 LLACE----------------------FLLQ-NGANVNQADSAGRGPLHHATILGHTGLA 284
Query: 335 KLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRA 373
L L GA + A D +G+ P+ +A + ++ + A
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323
Score = 59.4 bits (143), Expect = 1e-09
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNC 114
LL++GA N G+ P+H A G+ L L+ G D ++ G PL +A
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 115 KAEVVDLLIQ 124
A++V LL
Sbjct: 313 NADIVTLLRL 322
Score = 57.1 bits (137), Expect = 6e-09
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 12/128 (9%)
Query: 37 PNLTNIAARVKDGDRCA-LMLLKSGAGPNLTT--DDGQTPVHAAAKYGNLVTLQLLLEDG 93
P A L GA N D TP+ A +L+ + LL++G
Sbjct: 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG 258
Query: 94 GDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYAC 153
+ + G PLH A+ + L ++ + + + + +G L A
Sbjct: 259 ANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD---------LGARDSEGRDPLTIAM 309
Query: 154 QVTKAELI 161
+ A+++
Sbjct: 310 ETANADIV 317
Score = 54.8 bits (131), Expect = 3e-08
Identities = 22/134 (16%), Positives = 44/134 (32%), Gaps = 6/134 (4%)
Query: 346 ATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATT--KDGNTCAHIAAMQGSVGVIEE 403
+ G + AH + V +D T A S+ E
Sbjct: 195 GSLHPGALLFRASGHPPSLP-TMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEF 253
Query: 404 LMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQ 463
L++ ++ + PL A GH + + +K GA + G + +A +
Sbjct: 254 LLQ--NGANVNQADSAGR-GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAME 310
Query: 464 NGHNQVLEEMRSSK 477
+ ++ +R +K
Sbjct: 311 TANADIVTLLRLAK 324
Score = 42.5 bits (99), Expect = 3e-04
Identities = 21/86 (24%), Positives = 28/86 (32%)
Query: 422 ATPLQLAAEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSKALNV 481
ATPL A L++ GA+ + G +H A GH + A
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG 295
Query: 482 YSKKLGVTALHVAAYFGQADTVRELL 507
G L +A AD V L
Sbjct: 296 ARDSEGRDPLTIAMETANADIVTLLR 321
Score = 30.5 bits (68), Expect = 1.4
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 13/67 (19%)
Query: 487 GVTALHVAAYFGQADTVRELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNE 546
T L A LL + ++ S +G PLH A G+
Sbjct: 235 NATPLIQATAANSLLACEFLLQN-----GANVNQADS--------AGRGPLHHATILGHT 281
Query: 547 NVVRLLL 553
+ L L
Sbjct: 282 GLACLFL 288
Score = 29.8 bits (66), Expect = 3.0
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 508 SHVPGTVKSDPPTGASFLGELGSESGMTPLHLAAYSGNENVVRLLLNSAGVQVDAQTQE 566
T+ GA G + TPL A + + LL + G V+
Sbjct: 210 PPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSA 267
Score = 29.8 bits (66), Expect = 3.0
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 33/97 (34%)
Query: 1 MLQQNSGKLR------ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCAL 54
L QN + PLH A + A + LK GA +
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTG-LACLFLKRGADLGARD------------- 298
Query: 55 MLLKSGAGPNLTTDDGQTPVHAAAKYGNLVTLQLLLE 91
+G+ P+ A + N + LL
Sbjct: 299 -------------SEGRDPLTIAMETANADIVTLLRL 322
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 59.9 bits (145), Expect = 1e-09
Identities = 31/156 (19%), Positives = 54/156 (34%), Gaps = 31/156 (19%)
Query: 77 AAKYGNLVTLQLLLEDGGDPMYK------NKIGETPLHLASRNCKA---EVVDLLIQFVQ 127
A +L+++ +G D E LHLA + +VD +IQ
Sbjct: 139 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 198
Query: 128 NISQEKVLEYVNSVNEDGASALHYACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK 187
+ +++ DG +ALHYA + + +KLLL+ A V +
Sbjct: 199 H---------LDAKAADGNTALHYAALYNQPD-----------CLKLLLKGRALVGTVNE 238
Query: 188 QNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKALN 223
A ++ +LEQ + L+
Sbjct: 239 AGETAL--DIARKKHHKECEELLEQAQAGTFAFPLH 272
Score = 58.0 bits (140), Expect = 4e-09
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 20/122 (16%)
Query: 259 DQEGRSALHLAAEHGYLKVSSGKSLKHSVMSFRLPPHNIIPNGFLVHDHAAVIDILTLRK 318
LHLA + ++ F++ + +D
Sbjct: 168 QAPEELVLHLAVKVAN-------------------QASLPLVDFIIQ-NGGHLDAKAADG 207
Query: 319 QTPLHLAAEAGQLQVCKLLLDLGASIDATDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLV 378
T LH AA Q KLLL A + ++ G+ + +A + + E ++ +A
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267
Query: 379 TA 380
Sbjct: 268 AF 269
Score = 54.9 bits (132), Expect = 4e-08
Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 24/120 (20%)
Query: 5 NSGKLRETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARVKDGDRCALMLLKSGAGPN 64
++ E LH+A +V + L+ ++++G +
Sbjct: 166 DAQAPEELVLHLAVKVANQASLPLVDF------------------------IIQNGGHLD 201
Query: 65 LTTDDGQTPVHAAAKYGNLVTLQLLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQ 124
DG T +H AA Y L+LLL+ N+ GET L +A + E +LL Q
Sbjct: 202 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 261
Score = 44.9 bits (106), Expect = 6e-05
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 196 YCAVAGNNDVLTGMLEQMSGTEISKALNKQTS--IGWTPLLIAC---NRGHMELVNTMLN 250
+ A+ N D+L+ + +G + + L + L +A N+ + LV+ ++
Sbjct: 137 WTAIC-NRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 251 NHARVDVFDQEGRSALHLAAEHG 273
N +D +G +ALH AA +
Sbjct: 196 NGGHLDAKAADGNTALHYAALYN 218
Score = 44.1 bits (104), Expect = 8e-05
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 383 KDGNTCAHIA---AMQGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRV 439
H+A A Q S+ +++ +++ G + A+ T L AA + +++
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAA-DGNTALHYAALYNQPDCLKL 225
Query: 440 LVKAGASCTDENKTGFTAVHLAAQNGHNQVLEEMRSSK 477
L+K A N+ G TA+ +A + H + E + ++
Sbjct: 226 LLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 263
Score = 42.6 bits (100), Expect = 3e-04
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 339 DLGASIDATDDQ--GQKPIHVAAQNNFPEVAQI--FLRAHPSLVTATTKDGNTCAHIAAM 394
D G + D Q + +H+A + + F+ + + A DGNT H AA+
Sbjct: 157 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAAL 216
Query: 395 QGSVGVIEELMKFDRSGVISARNRVTEATPLQLAAEGGHANVVRVLVKA 443
++ L+K ++ N E T L +A + H +L +A
Sbjct: 217 YNQPDCLKLLLK--GRALVGTVNEAGE-TALDIARKKHHKECEELLEQA 262
Score = 35.3 bits (81), Expect = 0.050
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 2 LQQNSGKLR------ETPLHIAARVKDGDRCALMLLKSGAGPNLTNIAARV 46
+ QN G L T LH AA + C +LLK A N A
Sbjct: 193 IIQNGGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRALVGTVNEAGET 242
Score = 31.4 bits (71), Expect = 0.75
Identities = 24/108 (22%), Positives = 38/108 (35%), Gaps = 3/108 (2%)
Query: 412 VISARNRVTEATPLQLA---AEGGHANVVRVLVKAGASCTDENKTGFTAVHLAAQNGHNQ 468
+ + E L LA A +V +++ G + G TA+H AA
Sbjct: 162 LPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPD 221
Query: 469 VLEEMRSSKALNVYSKKLGVTALHVAAYFGQADTVRELLSHVPGTVKS 516
L+ + +AL + G TAL +A + L GT
Sbjct: 222 CLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269
Score = 31.0 bits (70), Expect = 1.1
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 14/76 (18%)
Query: 482 YSKKLGVTALHVAAYFGQADTVR--ELLSHVPGTVKSDPPTGASFLGELGSESGMTPLHL 539
++ LH+A ++ + + G + + + G T LH
Sbjct: 166 DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK------------AADGNTALHY 213
Query: 540 AAYSGNENVVRLLLNS 555
AA + ++LLL
Sbjct: 214 AALYNQPDCLKLLLKG 229
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-05
Identities = 82/533 (15%), Positives = 149/533 (27%), Gaps = 178/533 (33%)
Query: 109 LASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTK----------- 157
A+ + +L+ +F L YV+S+ E QV
Sbjct: 48 FAADDEPTTPAELVGKF---------LGYVSSLVEPSKVGQF--DQVLNLCLTEFENCYL 96
Query: 158 ---------AELIPITSKEDQKTVKLL---LEAGADVSLQTKQNHETAFHYCAVAGNNDV 205
A+L+ KT +L+ + A + +A GN +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 206 LT---GMLEQMSGT------EISKALNKQTSIGWTPLLIACNRGHMELVNTMLNNHARVD 256
+ G Q G E+ L + T L+ + E ++ ++ +
Sbjct: 157 VAIFGG---Q--GNTDDYFEELRD-LYQ-TY---HVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 257 VFDQEG---RSALHLAA---EHGYLK---VS---SG-KSLKHSVMSFR---LPPHNIIPN 300
+G L + + YL +S G L H V++ + P +
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 301 --GFLVHDH----AAVIDILTLRKQTPLHLAAEAGQ--------LQVCKLLLDLGASIDA 346
G H A I AE + +L +G
Sbjct: 267 LKGATGHSQGLVTAVAI--------------AETDSWESFFVSVRKAITVLFFIG----- 307
Query: 347 TDDQGQKPIHVAAQNNFPEVAQIFLRAHPSLVTATTKDGNTCA-HIAAMQG-SVGVIEEL 404
V +P + PS++ + ++ + ++ + +++
Sbjct: 308 ----------VRCYEAYPNTS-----LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDY 352
Query: 405 M-KFDRSG----------VISARNRVTEATPLQLAAEGGHANVVRVLVKAGA-SCTDENK 452
+ K + V A+N V P L + L KA A S D+++
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG------LNLTLRKAKAPSGLDQSR 406
Query: 453 TGFTAVHLAAQNG--------HNQVLEEMRSSKALNVYSKKLGVTA--LHVAAYFGQADT 502
F+ L N H+ +L ++ + A + + Y DT
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY----DT 462
Query: 503 -----VREL-----LSHV----------PGTVKSDP-------PTGASFLGEL 528
+R L V T + P GAS LG L
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL 515
Score = 41.6 bits (97), Expect = 8e-04
Identities = 45/246 (18%), Positives = 71/246 (28%), Gaps = 96/246 (39%)
Query: 395 QGS--VGVIEELMK--------FDRS--------GVISARNRVTEATPLQLA----AEGG 432
QGS G+ +L K ++R+ G S + V P+ L E G
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYG-FSILDIVINN-PVNLTIHFGGEKG 1681
Query: 433 HA---------------------NVVRVLVKAGASCTDE------NKTGFT-----AVHL 460
+ + + + S T + T FT +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 461 AAQNGHNQVLEEMRSSKALNVY---SKKLG-VTAL-HVAAYFGQADTVRELLSHVPG-TV 514
AA + L+ A + S LG AL +A V + G T+
Sbjct: 1742 AA----FEDLKSKGLIPADATFAGHS--LGEYAALASLADVMSIESLVE--VVFYRGMTM 1793
Query: 515 KSDPPTGASFLGELG-SESGM---TPLHLAAYSGNENVVRLL----------------LN 554
+ P ELG S GM P +AA S ++ ++ + N
Sbjct: 1794 QVAVPRD-----ELGRSNYGMIAINPGRVAA-SFSQEALQYVVERVGKRTGWLVEIVNYN 1847
Query: 555 SAGVQV 560
Q
Sbjct: 1848 VENQQY 1853
Score = 30.8 bits (69), Expect = 1.8
Identities = 32/220 (14%), Positives = 64/220 (29%), Gaps = 62/220 (28%)
Query: 92 DGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHY 151
+ D +K+ G + L + N + + + I +E + DG
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI-RENYSAMIFETIVDG------ 1699
Query: 152 ACQVTKAELIPITSKEDQKTVKLLLEAGADVSLQTK--Q--------------------N 189
K + I + ++ + + + T+ Q
Sbjct: 1700 -----KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 190 HETAF--H----YCAVAGNNDVLTGMLEQMS------GTEISKALNKQTSIGWTPLLIAC 237
+ F H Y A+A DV++ +E + G + A+ + +IA
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMS--IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 238 NRGHMELVNTMLNNHARVDVFDQEGRSAL--HLAAEHGYL 275
N G + F QE + + G+L
Sbjct: 1813 NPGRV------------AASFSQEALQYVVERVGKRTGWL 1840
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC
AMP; 2.30A {Escherichia coli}
Length = 671
Score = 31.3 bits (72), Expect = 0.84
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 169 QKTVKLLLEAGADVSLQTKQNHETAFHYCAVAGNNDVLTGMLEQMSGTEISKAL 222
+ + LL G V AG VLTG L QMS + L
Sbjct: 570 RNVISELLAEG--VHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARL 621
>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A
{Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3
Length = 357
Score = 30.9 bits (69), Expect = 1.0
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 36 GPNLTNIAARVKDGDRCALMLLKSGAGP-NLTTDDGQTPVHAAAKYGNLVTLQLLLEDGG 94
GP++ +A RVKD + L+ GA P ++ T + + A G L++ G
Sbjct: 74 GPSVCGMAFRVKDSQKAYNRALELGAQPIHIDTGPMELNLPAIKGIGG--APLYLIDRFG 131
Query: 95 DPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVN 139
+ I L RN + ++ N+ + +++ + N
Sbjct: 132 EGSSIYDIDFVYLEGVERNPVGAGLKVIDHLTHNVYRGRMVYWAN 176
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase
enzyme family, structural genomics, JOIN for structural
genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Length = 333
Score = 29.7 bits (67), Expect = 2.9
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 88 LLLEDGGDPMYKNKIGETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEY 137
LL+ED GD ++ I P VDLLI + ++
Sbjct: 89 LLIEDLGDALFTEVINNDPAQEMPL--YRAAVDLLIHL-HDAQTPELARL 135
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase
(CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1
c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Length = 482
Score = 29.1 bits (66), Expect = 4.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 36 GPNLTNIAARVKDGDRCALMLLKSGAG 62
IAA+V G+ C + GAG
Sbjct: 153 KAIFQGIAAKVGTGEPCCDWVGDDGAG 179
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 28.7 bits (65), Expect = 6.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 36 GPNLTNIAARVKDGDRCALMLLKSGAG 62
P LT IAA +DG+ C + GAG
Sbjct: 165 APILTKIAAVAEDGEPCVTYIGADGAG 191
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 28.4 bits (64), Expect = 7.2
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 36 GPNLTNIAARVKDGDRCALMLLKSGAG 62
P + AA+ DG C M GAG
Sbjct: 155 RPIVEAAAAKADDGRPCVTMNGSGGAG 181
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 28.0 bits (63), Expect = 7.8
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 9/59 (15%)
Query: 102 IG-ETPLHLASRNCKAEVVDLLIQFVQNISQEKVLEYVNSVNEDGASALHYACQVTKAE 159
IG T A K + D I++ + E GA + + E
Sbjct: 43 IGRLTAYEFAKLKSKLVLWD--------INKHGLEETAAKCKGLGAKVHTFVVDCSNRE 93
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.370
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,324,764
Number of extensions: 517567
Number of successful extensions: 5059
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2036
Number of HSP's successfully gapped: 649
Length of query: 567
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 468
Effective length of database: 3,937,614
Effective search space: 1842803352
Effective search space used: 1842803352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.6 bits)