BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12892
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 33/212 (15%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
NG T LH+A +LD+V++L+ G S G T LHIA+ + + + YG
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 237
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
ANA + +Q G T LH+A+ EG +V +AN ++
Sbjct: 238 ANA-----ESVQ-------------------GVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL- 195
+ TP+HL A+ GH + ++L K + T+ Y LH+A+ Y +VK LL
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Query: 196 -----NKKGIENYNVLHLAAMYSREDVVKLLL 222
N K Y+ LH AA D+V LLL
Sbjct: 333 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 96/213 (45%), Gaps = 33/213 (15%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY--GAKANA 79
T LH+A+ L +V+ L+ G S ++ N + +T LH+A+ G + KY AK NA
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 80 SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDH 139
D QT LH A+ G +VK AN ++
Sbjct: 76 KAKD------------------------DQTPLHCAARIGHTNMVKLLLENNANPNLATT 111
Query: 140 QDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL---- 195
TP+H+AA GH + L +K AS TK+ + LH+AA Y + V +LLL
Sbjct: 112 AGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 170
Query: 196 --NKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
N G LH+A ++ D+VKLLL + G
Sbjct: 171 HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGG 203
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
NG T LH+AA++ +++ R L+ YG S + ++ +G T LH+A+ EG +V +AN
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
++ + G+ T LH+ + EG + T
Sbjct: 271 GNLGNKSGL----------------------TPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK 198
TP+H+A+ G+ +++ L + +A + +TK Y+ LH AA D+V LLL
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLL-QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 199 GIEN 202
N
Sbjct: 368 ASPN 371
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 29/217 (13%)
Query: 16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
+ + +T LH+AAR ++ + L+ V+ + + QT LH A+ G +VK
Sbjct: 43 SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102
Query: 76 KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS 135
AN ++ A T+ G T LHIA+ EG V +A+ +
Sbjct: 103 NANPNL------------ATTA----------GHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 136 ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
+ TP+H+AA+ G + ELL ++ A K LH+A ++ D+VKLLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 196 NKKGIEN------YNVLHLAAMYSREDVVKLLLNKKG 226
+ G + Y LH+AA ++ +V + LL G
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 31/225 (13%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD-E 66
Q ++ A + T LH AAR +MV++L++ + ++ G T LHIA+ EG E
Sbjct: 68 QNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 127
Query: 67 ALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY 126
++ + A +T +G T LH+A+ G + +
Sbjct: 128 TVLALLEKEASQACMTK-----------------------KGFTPLHVAAKYGKVRVAEL 164
Query: 127 FYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS 186
A+ + TP+H+A + + I++LL + S Y LH+AA +
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQN 223
Query: 187 REDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
+ +V + LL N + ++ LHLAA ++V LLL+K+
Sbjct: 224 QVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 22/146 (15%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
A ++ G T LHLAA++ +MV +L+ + ++ N G T LH+ + EG +
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV------ 293
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
A + G+ D A T + G T LH+AS G+ LVK+ +A+
Sbjct: 294 ----ADVLIKHGVMVD---ATTRM---------GYTPLHVASHYGNIKLVKFLLQHQADV 337
Query: 135 SITDHQDRTPMHLAAENGHASIIELL 160
+ +P+H AA+ GH I+ LL
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLL 363
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 22/142 (15%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
NG T LHLAAR L++V++L++ G V+ ++ G+T LH+A+ G +VK A A+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
+ D G+T LH+A+ G +VK A A+ + D
Sbjct: 61 VNAKDKN----------------------GRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98
Query: 139 HQDRTPMHLAAENGHASIIELL 160
RTP+HLAA NGH +++LL
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLL 120
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 64/121 (52%), Gaps = 7/121 (5%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+T LH+A+ G +VK A A+ + D RTP+HLAA NGH +++LL + A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-AD 60
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
+ + K LHLAA +VVKLLL N K LHLAA +VVKLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 222 L 222
L
Sbjct: 121 L 121
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 23/143 (16%)
Query: 53 GQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTAL 112
G+T LH+A+ G +VK A A+ + D G +T L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG----------------------RTPL 39
Query: 113 HIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERT 172
H+A+ G +VK A A+ + D RTP+HLAA NGH +++LL + A + +
Sbjct: 40 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKD 98
Query: 173 KENYNVLHLAAMYSREDVVKLLL 195
K LHLAA +VVKLLL
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLL 121
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 63/123 (51%), Gaps = 11/123 (8%)
Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------ 195
RTP+HLAA NGH +++LL + A + + K LHLAA +VVKLLL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 196 NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQV 255
N K LHLAA +VVKLLL + G +V A +D GR L + +L V
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNA---KDKNGRTPLHLAARNGHLEVV 117
Query: 256 YLI 258
L+
Sbjct: 118 KLL 120
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 5 LSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG 64
L + + A NG T LHLAAR L++V++L++ G V+ ++ G+T LH+A+ G
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Query: 65 DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV 124
+VK A A+ + D G+T LH+A+ G +V
Sbjct: 80 HLEVVKLLLEAGADVNAKDKN----------------------GRTPLHLAARNGHLEVV 117
Query: 125 KYFYGAKA 132
K A A
Sbjct: 118 KLLLEAGA 125
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 35/179 (19%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AA + D V+ L++ G V+ + +G+T LH+A+ G + +VK GA NA +D
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD- 69
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
G+T LH+A+ G + +VK A+ + D +TP
Sbjct: 70 -----------------------GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTP 106
Query: 145 MHLAAENGHASIIELL----ADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
+HLAAENGH +++LL AD + RT L LA + E+VVKLL + G
Sbjct: 107 LHLAAENGHKEVVKLLLSQGADPNTSDSDGRTP-----LDLAREHGNEEVVKLLEKQGG 160
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
+G+T LH+A+ G + +VK A+ + D +TP+HLAAENGH +++LL + A
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG-A 94
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYN------VLHLAAMYSREDVVKL 220
+ + LHLAA ++VVKLLL++ N + L LA + E+VVKL
Sbjct: 95 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 221 LLNKKG 226
L + G
Sbjct: 155 LEKQGG 160
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ + A+ +G T LHLAA ++V++L+ G + ++ +G+T LH+A+ G +
Sbjct: 25 ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKE 84
Query: 68 LVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
+VK GA NA +D G+T LH+A+ G + +VK
Sbjct: 85 VVKLLLSQGADPNAKDSD------------------------GKTPLHLAAENGHKEVVK 120
Query: 126 YFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + +D RTP+ LA E+G+ +++LL
Sbjct: 121 LLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 115 ASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE 174
A+ G++ VK A+ + +D +TP+HLAAENGH +++LL + A + +
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSD 69
Query: 175 NYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGIN 228
LHLAA ++VVKLLL N K + LHLAA ++VVKLLL++
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG--- 126
Query: 229 VAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQ 261
A D GR L + V L+ KQ
Sbjct: 127 -ADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 82/175 (46%), Gaps = 27/175 (15%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AA + D V+ L++ G V+ + +G+T LH A+ EG + +VK GA NA +D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD- 69
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
G+T LH A+ EG + +VK A+ + D RTP
Sbjct: 70 -----------------------GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTP 106
Query: 145 MHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
+H AA+ GH I++LL K A + + L LA + E++VKLL + G
Sbjct: 107 LHYAAKEGHKEIVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 26/155 (16%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ + A+ +G T LH AA++ ++V++L+ G V+ ++ +G+T LH A+ EG +
Sbjct: 25 ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKE 84
Query: 68 LVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
+VK GA NA +D G+T LH A+ EG + +VK
Sbjct: 85 IVKLLISKGADVNAKDSD------------------------GRTPLHYAAKEGHKEIVK 120
Query: 126 YFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + +D RTP+ LA E+G+ I++LL
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
+G+T LH A+ EG + +VK A+ + D RTP+H AA+ GH I++LL K A
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG-A 94
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYN------VLHLAAMYSREDVVKL 220
+ + + LH AA +++VKLL++K N + L LA + E++VKL
Sbjct: 95 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 221 LLNKKG 226
L + G
Sbjct: 155 LEKQGG 160
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 81/175 (46%), Gaps = 27/175 (15%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AA + D V+ L++ G V+ + +G+T LH A+ G + +VK GA NA +D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD- 69
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
G+T LH A+ G + +VK A+ + D RTP
Sbjct: 70 -----------------------GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP 106
Query: 145 MHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
+H AAENGH +++LL K A + + L LA + E+VVKLL + G
Sbjct: 107 LHHAAENGHKEVVKLLISKG-ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 67/126 (53%), Gaps = 7/126 (5%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
+G+T LH A+ G + +VK A+ + D RTP+H AAENGH +++LL K A
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG-A 94
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYN------VLHLAAMYSREDVVKL 220
+ + + LH AA ++VVKLL++K N + L LA + E+VVKL
Sbjct: 95 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKL 154
Query: 221 LLNKKG 226
L + G
Sbjct: 155 LEKQGG 160
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 26/155 (16%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ + A+ +G T LH AA ++V++L+ G V+ ++ +G+T LH A+ G +
Sbjct: 25 ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84
Query: 68 LVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
+VK GA NA +D G+T LH A+ G + +VK
Sbjct: 85 VVKLLISKGADVNAKDSD------------------------GRTPLHHAAENGHKEVVK 120
Query: 126 YFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + +D RTP+ LA E+G+ +++LL
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 11/153 (7%)
Query: 115 ASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE 174
A+ G++ VK A+ + +D RTP+H AAENGH +++LL K A + + +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSD 69
Query: 175 NYNVLHLAAMYSREDVVKLLLNK------KGIENYNVLHLAAMYSREDVVKLLLNKKGIN 228
LH AA ++VVKLL++K K + LH AA ++VVKLL++K
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG--- 126
Query: 229 VAALGGEDLTGRPDLTVGPVQAYLYQVYLISKQ 261
A + D GR L + V L+ KQ
Sbjct: 127 -ADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AA + D V+ L++ G + + +G+T LH A+ G + +VK GA NA +D
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD- 69
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
G+T LH A+ G + +VK A+ + D RTP
Sbjct: 70 -----------------------GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTP 106
Query: 145 MHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
+H AAENGH I++LL K A + L LA + E++VKLL + G
Sbjct: 107 LHYAAENGHKEIVKLLLSKG-ADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
+G+T LH A+ G + +VK A+ + D RTP+H AAENGH I++LL K A
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG-A 94
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYN------VLHLAAMYSREDVVKL 220
+ + LH AA +++VKLLL+K N + L LA + E++VKL
Sbjct: 95 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKL 154
Query: 221 LLNKKG 226
L + G
Sbjct: 155 LEKQGG 160
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 26/148 (17%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
A+ +G T LH AA ++V++L+ G + ++ +G+T LH A+ G + +VK
Sbjct: 32 ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS 91
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
GA NA +D G+T LH A+ G + +VK A
Sbjct: 92 KGADPNAKDSD------------------------GRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 133 NASITDHQDRTPMHLAAENGHASIIELL 160
+ + +D RTP+ LA E+G+ I++LL
Sbjct: 128 DPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 115 ASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE 174
A+ G++ VK A+ + +D RTP+H AAENGH I++LL K A + +
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSD 69
Query: 175 NYNVLHLAAMYSREDVVKLLLNK------KGIENYNVLHLAAMYSREDVVKLLLNK 224
LH AA +++VKLLL+K K + LH AA +++VKLLL+K
Sbjct: 70 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 31/160 (19%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ ++ +G T LH+A+ EG +V+ A A+ + D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-- 78
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+G T LH+A+ EG +V+ A A+ + D TP+H
Sbjct: 79 --------------------DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
LAA GH I+E+L DKF + F+ + +N N
Sbjct: 119 LAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN 158
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 22/149 (14%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A +G T LHLAAR+ L++V +L+ G V+ ++ +G T LH+A+ EG +V+
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
A A+ + D +G T LH+A+ EG +V+ A
Sbjct: 99 LLKAGADVNAKDK----------------------DGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + D +T ++ +NG+ + E+L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 31/160 (19%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ ++ +G T LH+A+ EG +V+ A A+ + D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-- 66
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+G T LH+A+ EG +V+ A A+ + D TP+H
Sbjct: 67 --------------------DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
LAA GH I+E+L DKF + F+ +N N
Sbjct: 107 LAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGN 146
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A +G T LHLAAR+ L++V +L+ G V+ ++ +G T LH+A+ EG +V+
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
A A+ + D +G T LH+A+ EG +V+ A
Sbjct: 87 LLKAGADVNAKDK----------------------DGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + D +TP LA +NG+ I E+L
Sbjct: 125 ADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ ++ +G T LH+A+ EG +V+ A A+ + D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-- 66
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+G T LH+A+ EG +V+ A A+ + D TP+H
Sbjct: 67 --------------------DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106
Query: 147 LAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
LAA GH I+E+L K A + + K LA ED+ ++L
Sbjct: 107 LAAREGHLEIVEVLL-KAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
+ A +G T LHLAAR+ L++V +L+ G V+ ++ +G T LH+A+ EG +V+
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
A A+ + D +G T LH+A+ EG +V+ A A
Sbjct: 88 LKAGADVNAKDK----------------------DGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 133 NASITDHQDRTPMHLAAENGHASIIELL 160
+ + D +TP LA GH I E+L
Sbjct: 126 DVNAQDKFGKTPFDLAIREGHEDIAEVL 153
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 74/164 (45%), Gaps = 39/164 (23%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AAR D VRIL+ G V+ + +G T LH+A+ G +V+ +GA NA TD
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD- 79
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDR 142
G T LH+A+ G +V+ YGA NA D
Sbjct: 80 -----------------------GWTPLHLAADNGHLEIVEVLLKYGADVNAQ--DAYGL 114
Query: 143 TPMHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
TP+HLAA+ GH I+E+L DKF + F+ + +N N
Sbjct: 115 TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 107 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
+G T LH+A+ G +V+ +GA NA TD TP+HLAA+NGH I+E+L K+
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTD--GWTPLHLAADNGHLEIVEVLL-KY 102
Query: 165 RASIFERTKENYNVLHLAAMYSREDVVKLLL 195
A + + LHLAA ++V++LL
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 26/143 (18%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKA 77
G T LHLAA ++V +L+ +G V+ ++ +G T LH+A+ G +V+ YGA
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADV 106
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
NA G T LH+A+ G +V+ A+ +
Sbjct: 107 NAQDA------------------------YGLTPLHLAADRGHLEIVEVLLKHGADVNAQ 142
Query: 138 DHQDRTPMHLAAENGHASIIELL 160
D +T ++ +NG+ + E+L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A +G T LHLAA L++V +L+ YG V+ Q+ G T LH+A
Sbjct: 62 IVEVLLKHGAD-VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Query: 61 SAEGDEALVKYF--YGAKANA 79
+ G +V+ +GA NA
Sbjct: 121 ADRGHLEIVEVLLKHGADVNA 141
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+T LH+A+ G +VK A A+ + D RTP+HLAA NGH +++LL + A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-AD 60
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL 195
+ + K LHLAA +VVKLLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------ 195
RTP+HLAA NGH +++LL + A + + K LHLAA +VVKLLL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 196 NKKGIENYNVLHLAAMYSREDVVKLLL 222
N K LHLAA +VVKLLL
Sbjct: 62 NAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 22/108 (20%)
Query: 53 GQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTAL 112
G+T LH+A+ G +VK A A+ + D G +T L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG----------------------RTPL 39
Query: 113 HIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
H+A+ G +VK A A+ + D RTP+HLAA NGH +++LL
Sbjct: 40 HLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 22/114 (19%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
NG T LHLAAR L++V++L++ G V+ ++ G+T LH+A+ G +VK A A+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
+ D G+T LH+A+ G +VK A A
Sbjct: 61 VNAKDKN----------------------GRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 5 LSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG 64
L + + A NG T LHLAAR L++V++L++ G V+ ++ G+T LH+A+ G
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Query: 65 DEALVKYFYGAKA 77
+VK A A
Sbjct: 80 HLEVVKLLLEAGA 92
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 179 LHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAAL 232
LHLAA +VVKLLL N K LHLAA +VVKLLL + G +V A
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNA- 63
Query: 233 GGEDLTGRPDLTVGPVQAYLYQVYLI 258
+D GR L + +L V L+
Sbjct: 64 --KDKNGRTPLHLAARNGHLEVVKLL 87
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 3 ELLSTQTAEQLKATTINGD--TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
EL + A++ AT + D TALH A ++V L+ G V+ ++ G + LHIA
Sbjct: 21 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80
Query: 61 SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG-----------Q 109
++ G + +VK G A + + G AA + +++ EG
Sbjct: 81 ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA 140
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
TA+H A+A+G+ ++ KA+ +I D + TP+HLA + +LL + ASI+
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIY 199
Query: 170 ERTKENYNVLHLA 182
KE L +A
Sbjct: 200 IENKEEKTPLQVA 212
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLH 180
E L + K+ A+ TD RT +H A GH I+E L + + ++ ++ LH
Sbjct: 20 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLH 78
Query: 181 LAAMYSREDVVKLLLNKKGIEN------YNVLHLAAMYSREDVVKLLL 222
+AA R+++VK LL K N LH AA +R ++ +LL
Sbjct: 79 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 3 ELLSTQTAEQLKATTINGD--TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
EL + A++ AT + D TALH A ++V L+ G V+ ++ G + LHIA
Sbjct: 22 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIA 81
Query: 61 SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG-----------Q 109
++ G + +VK G A + + G AA + +++ EG
Sbjct: 82 ASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA 141
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
TA+H A+A+G+ ++ KA+ +I D + TP+HLA + +LL + ASI+
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIY 200
Query: 170 ERTKENYNVLHLA 182
KE L +A
Sbjct: 201 IENKEEKTPLQVA 213
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLH 180
E L + K+ A+ TD RT +H A GH I+E L + + ++ ++ LH
Sbjct: 21 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLH 79
Query: 181 LAAMYSREDVVKLLLNKKGIEN------YNVLHLAAMYSREDVVKLLL 222
+AA R+++VK LL K N LH AA +R ++ +LL
Sbjct: 80 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 127
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 31/160 (19%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ + +G T LH+A++ G +V+ A+ + +D G
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
I T LH+A+A G +V+ A+ + D+ TP+H
Sbjct: 81 I----------------------TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
LAA+ GH I+E+L DKF + F+ + +N N
Sbjct: 119 LAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA TD+ TP+HLAA NGH I+E+L K A +
Sbjct: 24 AGQDDEVRILMANGADVNA--TDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNASDLTG 80
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
LHLAA ++V++LL N + + LHLAA Y ++V++LL K G +V
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLL-KHGADV 139
Query: 230 AA 231
A
Sbjct: 140 NA 141
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ AT +G T LHLAA L++V +L+ G V+ + G T LH+A+A G +V+
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEV 98
Query: 72 F--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG 129
+GA NA D G T LH+A+ G +V+
Sbjct: 99 LLKHGADVNAYDND------------------------GHTPLHLAAKYGHLEIVEVLLK 134
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + D +T ++ +NG+ + E+L
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A+ + G T LHLAA L++V +L+ +G V+ + +G T LH+A
Sbjct: 62 IVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
Query: 61 SAEGDEALVKYF--YGAKANA 79
+ G +V+ +GA NA
Sbjct: 121 AKYGHLEIVEVLLKHGADVNA 141
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+T LHIAS +GD V+Y ++ ++ DH TP+H A +GH ++ELL + +A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHKAL 68
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLLNKKGIEN-YNVLHLAAM-YSREDVVKLLL 222
+ +N + LH AA D+VKLLL+ N N+ L + Y+ ++ +K LL
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 24/121 (19%)
Query: 16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
T G+T LH+A+ K D+ V L+ G+ ++++ G T LH A G +V+
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 76 KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKAN 133
KA + T G Q D + LH A+ G +VK YGA N
Sbjct: 66 KALVNTT---GYQND-------------------SPLHDAAKNGHVDIVKLLLSYGASRN 103
Query: 134 A 134
A
Sbjct: 104 A 104
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
+ T D+ LH AA+ +D+V++L+ YG S + N
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 72/164 (43%), Gaps = 39/164 (23%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AAR D VRIL+ G V+ + G T LH+ G +++ Y A NAS
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDK-- 78
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDR 142
G T LH+A+ G +V+ YGA NA D+Q
Sbjct: 79 ----------------------SGWTPLHLAAYRGHLEIVEVLLKYGADVNA--MDYQGY 114
Query: 143 TPMHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
TP+HLAAE+GH I+E+L DKF + F+ + +N N
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 30/152 (19%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
+ A G T LHL L+++ +L+ Y V+ + G T LH+A+ G +V+
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVL 99
Query: 73 --YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--Y 128
YGA NA D+QG T LH+A+ +G +V+ Y
Sbjct: 100 LKYGADVNA--MDYQGY----------------------TPLHLAAEDGHLEIVEVLLKY 135
Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELL 160
GA NA D +T ++ +NG+ + E+L
Sbjct: 136 GADVNAQ--DKFGKTAFDISIDNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 10 AEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALV 69
A + A+ +G T LHLAA + L++V +L+ YG V+ + +G T LH+A+ +G +V
Sbjct: 70 AADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIV 129
Query: 70 KYF--YGAKANA 79
+ YGA NA
Sbjct: 130 EVLLKYGADVNA 141
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 31/160 (19%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ ++ G+T LH+A+ +G +V+ A+ + D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM- 79
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
G T LH+A+ G +V+ A+ + TD TP+H
Sbjct: 80 ---------------------GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
LAA+ GH I+E+L DKF + F+ + +N N
Sbjct: 119 LAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA D +TP+HLAA GH I+E+L K A + K
Sbjct: 24 AGQDDEVRILMANGADVNAE--DDSGKTPLHLAAIKGHLEIVEVLL-KHGADVNAADKMG 80
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
LHLAA+Y ++V++LL N + LHLAA ++V++LL K G +V
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLL-KYGADV 139
Query: 230 AA 231
A
Sbjct: 140 NA 141
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 26/151 (17%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A +G T LHLAA K L++V +L+ +G V+ + G T LH+A+ G +V+
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEV 98
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YG 129
A+ + TD G T LH+A+ G +V+ YG
Sbjct: 99 LLKNGADVNATDTYGF----------------------TPLHLAADAGHLEIVEVLLKYG 136
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELL 160
A NA D +T ++ +NG+ + E+L
Sbjct: 137 ADVNAQ--DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 35/162 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AAR D VRIL+ G V+ + G T LH+A+ G +V+ YGA NA
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-- 78
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
G T LH+A+ G +V+ A+ + D++ TP
Sbjct: 79 ----------------------YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
+HLAA +GH I+E+L DKF + F+ + +N N
Sbjct: 117 LHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA TD TP+HLAA+ GH I+E+L K+ A +
Sbjct: 24 AGQDDEVRILMANGADVNA--TDWLGHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYG 80
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
LHLAA ++V++LL N K E + LHLAA ++V++LL K G +V
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADV 139
Query: 230 AA 231
A
Sbjct: 140 NA 141
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 26/151 (17%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ AT G T LHLAA+ L++V +L+ YG V+ + G T LH+A+ G +V+
Sbjct: 39 DVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEV 98
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YG 129
A+ + D++G T LH+A+ +G +V+ YG
Sbjct: 99 LLKHGADVNAKDYEGF----------------------TPLHLAAYDGHLEIVEVLLKYG 136
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELL 160
A NA D +T ++ +NG+ + E+L
Sbjct: 137 ADVNAQ--DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 31/160 (19%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ ++ G T LH+A+ G +V+ A+ + DH G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+ T L +A+ G +V+ A+ + D + TP+H
Sbjct: 81 M----------------------TPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
LAA GH I+E+L DKF + F+ + +N N
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
DE + GA NA D TP+HLAA NGH I+E+L K A + L
Sbjct: 28 DEVRILMANGADVNAE--DASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPL 84
Query: 180 HLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
LAA++ ++V++LL N +E + LHLAAM+ ++V++LL K G +V A
Sbjct: 85 RLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNA 141
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G T LH+A+ G +V+ A+ + DH TP+ LAA GH I+E+L K A
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNGAD 105
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL 195
+ E + LHLAAM+ ++V++LL
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLL 133
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A +G T LHLAA L++V +L+ G V+ + G T L +A+
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA---------- 88
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
+G H I + G V AN + EG T LH+A+ G +V+
Sbjct: 89 LFG---------HLEIVEVLLKNGADVNANDM---EGHTPLHLAAMFGHLEIVEVLLKNG 136
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + D +T ++ +NG+ + E+L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A + G T LHLAA L++V +L+ G V+ Q+ G+TA I+
Sbjct: 95 IVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Query: 61 SAEGDEALVKYF 72
G+E L +
Sbjct: 154 IDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 35/162 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ ++ G T LH+A+ G +V+ A+ + D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS- 79
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTP 144
G T LH+A+ G +V+ YGA NA D TP
Sbjct: 80 ---------------------GSTPLHLAAKRGHLEIVEVLLKYGADVNAD--DTIGSTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
+HLAA+ GH I+E+L DKF + F+ + +N N
Sbjct: 117 LHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 30/145 (20%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKA 77
GDT LHLAAR L++V +L+ G V+ + G T LH+A+ G +V+ YGA
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANAS 135
NA T G T LH+A+ G +V+ YGA NA
Sbjct: 107 NADDT------------------------IGSTPLHLAADTGHLEIVEVLLKYGADVNAQ 142
Query: 136 ITDHQDRTPMHLAAENGHASIIELL 160
D +T ++ +NG+ + E+L
Sbjct: 143 --DKFGKTAFDISIDNGNEDLAEIL 165
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A +G T LHLAA++ L++V +L+ YG V+ + G T LH+A
Sbjct: 62 IVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLA 120
Query: 61 SAEGDEALVKYF--YGAKANA 79
+ G +V+ YGA NA
Sbjct: 121 ADTGHLEIVEVLLKYGADVNA 141
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 31/160 (19%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ ++ G T LH+A+ G +V+ A+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+ T LH+A+ G +V+ A+ + +D TP+H
Sbjct: 81 V----------------------TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
LAA+ GH I+E+L DKF + F+ + +N N
Sbjct: 119 LAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 22/149 (14%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A G T LHLAA L++V +L+ G V+ ++ G T LH+A+ G +V+
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
A+ + +D G T LH+A+ G +V+
Sbjct: 99 LLKNGADVNASDSHGF----------------------TPLHLAAKRGHLEIVEVLLKNG 136
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + D +T ++ +NG+ + E+L
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 31/160 (19%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ + G T LH+A+ G +V+ A+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+ T LH+A+ G +V+ A+ + DH TP+H
Sbjct: 81 V----------------------TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLH 118
Query: 147 LAAENGHASIIELL---------ADKFRASIFERTKENYN 177
LAA GH I+E+L DKF + F+ + +N N
Sbjct: 119 LAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G T LHLAA L++V +L+ G V+ + G T LH+A+ G +V+ A+
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV 106
Query: 80 SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDH 139
+ DH G T LH+A+ G +V+ A+ + D
Sbjct: 107 NANDHNGF----------------------TPLHLAANIGHLEIVEVLLKHGADVNAQDK 144
Query: 140 QDRTPMHLAAENGHASIIELL 160
+T ++ +NG+ + E+L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ + A NG T LHLAA L++V +L+ +G V+ Q+ G+TA I+ G+E
Sbjct: 101 KNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 68 LVKYF 72
L +
Sbjct: 161 LAEIL 165
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
TALH A ++V L+ G V+ ++ G + LHIA++ G + +VK A+ +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 82 TDHQGIQRDIAAAGTSVLANCLLMGEG-----------QTALHIASAEGDEALVKYFYGA 130
+ G AA + +++ EG TA+H A+A+G+ +V
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
KA+ +I D + TP+HLA + + L + ASI+ KE L +A
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVA 212
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A NG T LH AA K ++ +L++ G + D ++ TA+H A+A+G+ +V
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
KA+ +I D EG T LH+A E K+
Sbjct: 158 LLFYKASTNIQD----------------------TEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASI 168
A+ I + +++TP+ + A+ G I++ LA+ AS+
Sbjct: 196 ASIYIENKEEKTPLQV-AKGGLGLILKRLAEGEEASM 231
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 29/102 (28%)
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
K+ A+ TD RT +H A GH I+E L L L
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFL------------------LQLG-------- 63
Query: 191 VKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAAL 232
+ +N K ++ LH+AA +++VK LL KG +V A+
Sbjct: 64 --VPVNDKDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAV 102
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 69/162 (42%), Gaps = 35/162 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ + G T LH+A+ G +V+ A+ D G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTP 144
T LH+A+ G +V+ YGA NA D TP
Sbjct: 81 F----------------------TPLHLAAMTGHLEIVEVLLKYGADVNA--FDMTGSTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
+HLAA+ GH I+E+L DKF + F+ + +N N
Sbjct: 117 LHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A + G T LHLAA L++V +L+ YG V+ + G T LH+A
Sbjct: 62 IVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120
Query: 61 SAEGDEALVKYF--YGAKANA 79
+ EG +V+ YGA NA
Sbjct: 121 ADEGHLEIVEVLLKYGADVNA 141
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 30/149 (20%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A G T LHLAA L++V +L+ +G VD + G T LH+A+ G +V+
Sbjct: 39 DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEV 98
Query: 72 F--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF-- 127
YGA NA D+ G T LH+A+ EG +V+
Sbjct: 99 LLKYGADVNA---------FDMT---------------GSTPLHLAADEGHLEIVEVLLK 134
Query: 128 YGAKANASITDHQDRTPMHLAAENGHASI 156
YGA NA D +T ++ +NG+ +
Sbjct: 135 YGADVNAQ--DKFGKTAFDISIDNGNEDL 161
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A + G T LHLAA + L++V +L+ YG V+ Q+ G+TA I+
Sbjct: 95 IVEVLLKYGAD-VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Query: 61 SAEGDEALVK 70
G+E L K
Sbjct: 154 IDNGNEDLAK 163
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 34/145 (23%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA D+ TP+HLAA +GH I+E+L K A +
Sbjct: 24 AGQDDEVRILIANGADVNA--VDNTGLTPLHLAAVSGHLEIVEVLL-KHGADV------- 73
Query: 176 YNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGE 235
+ + + LHLAAM ++V++LL K G +V A
Sbjct: 74 --------------------DAADVYGFTPLHLAAMTGHLEIVEVLL-KYGADVNAF--- 109
Query: 236 DLTGRPDLTVGPVQAYLYQVYLISK 260
D+TG L + + +L V ++ K
Sbjct: 110 DMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
TALH A ++V L+ G V+ ++ G + LHIA++ G + +VK A+ +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNA 101
Query: 82 TDHQGIQRDIAAAGTSVLANCLLMGEG-----------QTALHIASAEGDEALVKYFYGA 130
+ G AA + +++ EG TA+H A+A+G+ +V
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
KA+ +I D + TP+HLA + + L + ASI+ KE L +A
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENKEEKTPLQVA 212
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A NG T LH AA K ++ +L++ G + D ++ TA+H A+A+G+ +V
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
KA+ +I D EG T LH+A E K+
Sbjct: 158 LLFYKASTNIQD----------------------TEGNTPLHLACDEERVEEAKFLVTQG 195
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASI 168
A+ I + +++TP+ + A+ G I++ LA+ AS+
Sbjct: 196 ASIYIENKEEKTPLQV-AKGGLGLILKRLAEGEEASM 231
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 29/102 (28%)
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
K+ A+ TD RT +H A GH I+E L L L
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFL------------------LQLG-------- 63
Query: 191 VKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAAL 232
+ +N K ++ LH+AA R+++VK LL KG +V A+
Sbjct: 64 --VPVNDKDDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAV 102
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
+G T LH A+ G VK A+ + TP+HLAA+NGHA I++LL K A
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-A 66
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLL 194
+ R+K+ HLA ++VKLL
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 143 TPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------N 196
TP+H AA+NGHA ++ L K A + R+K+ LHLAA ++VKLLL N
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 197 KKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
+ + HLA ++VK LL+ KG +V A
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVK-LLDAKGADVNA 103
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 26/111 (23%)
Query: 52 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
+G T LH A+ G VK GA NA D G
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD------------------------GN 43
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
T LH+A+ G +VK A+ + TP HLA +NGH I++LL
Sbjct: 44 TPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
+ A + +G+T LHLAA+ ++V++L+ G V+ ++ +G T H+A G +VK
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Query: 73 --YGAKANA 79
GA NA
Sbjct: 95 DAKGADVNA 103
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 50/122 (40%), Gaps = 28/122 (22%)
Query: 17 TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YG 74
+ +G+T LH AA+ + V+ L+ G V+ ++ +G T LH+A+ G +VK G
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
A NA D G T H+A G +VK GA
Sbjct: 66 ADVNARSKD------------------------GNTPEHLAKKNGHHEIVKLLDAKGADV 101
Query: 133 NA 134
NA
Sbjct: 102 NA 103
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 87/208 (41%), Gaps = 46/208 (22%)
Query: 24 LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY----------FY 73
+H+AARK D VR L++ G S IQN G TALH+A G KY ++
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH 83
Query: 74 GAKA-----NASITD--------------------HQGIQRDIAAAGTSVLANCLLMGEG 108
G K A+ TD ++ +R++ G+ V +C +G
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHV-KHC----KG 138
Query: 109 QTALHIASAEGDEAL--VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
QTALH G E L +K A+ + D D TP+ A E + ++L D +
Sbjct: 139 QTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVPS 198
Query: 167 SIFER----TKENYNVLHLAAMYSREDV 190
R K+ + LH A + + EDV
Sbjct: 199 KSSLRLDYANKQGNSHLHWAILINWEDV 226
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 35/162 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AAR D VRIL+ G V+ + G T LH+A+ G +V+ +GA NA
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---- 76
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
DI G T LH+A+ G +V+ A+ + D TP
Sbjct: 77 -----DIX---------------GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
+HLAA GH I+E+L DKF + F+ + +N N
Sbjct: 117 LHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA TD TP+HLAA GH I+E+L K A +
Sbjct: 24 AGQDDEVRILMANGADVNA--TDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIXG 80
Query: 176 YNVLHLAAMYSREDVVKLLLNKKGIENYNV-------LHLAAMYSREDVVKLLLNKKGIN 228
LHLAA+ ++V++LL K G + V LHLAA+ ++V++LL K G +
Sbjct: 81 STPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL-KHGAD 138
Query: 229 VAA 231
V A
Sbjct: 139 VNA 141
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ AT +G T LHLAA L++V +L+ +G V+ + G T LH+A+ G +V+
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEV 98
Query: 72 F--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG 129
+GA NA T G T LH+A+ G +V+
Sbjct: 99 LLKHGADVNAVDT------------------------WGDTPLHLAAIMGHLEIVEVLLK 134
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + D +T ++ +NG+ + E+L
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 35/162 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AAR D VRIL+ G V+ + G T LH+A+ G +V+ +GA NA
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI---- 76
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
DI G T LH+A+ G +V+ A+ + D TP
Sbjct: 77 -----DIM---------------GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
+HLAA GH I+E+L DKF + F+ + +N N
Sbjct: 117 LHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA TD TP+HLAA GH I+E+L K A +
Sbjct: 24 AGQDDEVRILMANGADVNA--TDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIMG 80
Query: 176 YNVLHLAAMYSREDVVKLLLNKKGIENYNV-------LHLAAMYSREDVVKLLLNKKGIN 228
LHLAA+ ++V++LL K G + V LHLAA+ ++V++LL K G +
Sbjct: 81 STPLHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLL-KHGAD 138
Query: 229 VAA 231
V A
Sbjct: 139 VNA 141
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 26/151 (17%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ AT +G T LHLAA L++V +L+ +G V+ + G T LH+A+ G +V+
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEV 98
Query: 72 F--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG 129
+GA NA T G T LH+A+ G +V+
Sbjct: 99 LLKHGADVNAVDT------------------------WGDTPLHLAAIMGHLEIVEVLLK 134
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + D +T ++ +NG+ + E+L
Sbjct: 135 HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 10/122 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA+ D+ TP+HLAA +GH I+E+L K A +
Sbjct: 24 AGQDDEVRILMANGADVNAA--DNTGTTPLHLAAYSGHLEIVEVLL-KHGADVDASDVFG 80
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
Y LHLAA + ++V++LL N + LHLAA + ++V++LL K G +V
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL-KHGADV 139
Query: 230 AA 231
A
Sbjct: 140 NA 141
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 35/162 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AAR D VRIL+ G V+ + G T LH+A+ G +V+ +GA +AS
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS---- 76
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
D+ G T LH+A+ G +V+ A+ + D TP
Sbjct: 77 -----DVF---------------GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
+HLAA+ G+ I+E+L DKF + F+ + +N N
Sbjct: 117 LHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 26/143 (18%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY--GAKA 77
G T LHLAA L++V +L+ +G VD + G T LH+A+ G +V+ GA
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
NA +D G T LH+A+ G +V+ A+ +
Sbjct: 107 NAMDSD------------------------GMTPLHLAAKWGYLEIVEVLLKHGADVNAQ 142
Query: 138 DHQDRTPMHLAAENGHASIIELL 160
D +T ++ +NG+ + E+L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 12/124 (9%)
Query: 115 ASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE 174
A+ + DE + GA NA TD TP+HLAA NG I+E+L K A +
Sbjct: 15 AAGQDDEVRILMANGADVNA--TDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSA 71
Query: 175 NYNVLHLAAMYSREDVVKLLLNKKGIE-------NYNVLHLAAMYSREDVVKLLLNKKGI 227
LHLAA ++V++LL K G + + LHLAA+ + ++V++LL K G
Sbjct: 72 GITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLL-KHGA 129
Query: 228 NVAA 231
+V A
Sbjct: 130 DVNA 133
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 24/175 (13%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G L AA +D D VRIL+ G V+ + G T LH+A+A G +V+ A+
Sbjct: 7 GKKLLEAAAAGQD-DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV 65
Query: 80 SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDH 139
+ +D GI T LH+A+ +G +V+ A+ + D
Sbjct: 66 NASDSAGI----------------------TPLHLAAYDGHLEIVEVLLKHGADVNAYDR 103
Query: 140 QDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
TP+HLAA +G I+E+L K A + + ++ +ED+ ++L
Sbjct: 104 AGWTPLHLAALSGQLEIVEVLL-KHGADVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
+ AT NG T LHLAA L++V +L+ G V+ + G T LH+A+ +G +V+
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 73 --YGAKANA 79
+GA NA
Sbjct: 92 LKHGADVNA 100
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 78/186 (41%), Gaps = 38/186 (20%)
Query: 17 TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAK 76
++G TALH A ++DMV+ LV+ G +++ + EG LH A++ G + +Y
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129
Query: 77 ANASITDHQG---------------IQRDIAAAGTSVLA--------------NCLLMG- 106
A+ + +G +Q ++ G + A L G
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 107 --------EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIE 158
G TALH+A+A+G ++K A+ + +I D+ TP+H AA G
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249
Query: 159 LLADKF 164
+L +
Sbjct: 250 ILVENL 255
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 99/262 (37%), Gaps = 66/262 (25%)
Query: 21 DTALHLAA-RKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
D A+ LAA D + V L++ G ++ N +G TALH A + + +VK+ AN
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99
Query: 80 SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDH 139
+ D+ EG LH A++ G + +Y A+ +
Sbjct: 100 NQPDN----------------------EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137
Query: 140 QDRTPMHLAAE-----------NGHASIIELLADKFRASIFERTKENY------------ 176
+ TP+ +A E N IE A K I R +
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIE-AARKEEERIMLRDARQWLNSGHINDVRHA 196
Query: 177 ----NVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL----- 221
LH+AA +V+KLL+ N K + + LH AA + +E+ ++L
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256
Query: 222 ----LNKKGINVAALGGEDLTG 239
+NK G + ED+ G
Sbjct: 257 DMEAVNKVGQTAFDVADEDILG 278
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 24/176 (13%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYFYGAKANAS 80
T LH AA +D+V+ + G VD G+ T LH A+ +G ++V A+ S
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 81 ITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQ 140
+ D GEG + +H+A+ G ++V Y + + D
Sbjct: 104 LID----------------------GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN 141
Query: 141 DRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV-LHLAAMYSREDVVKLLL 195
TP+ AA H+ L F S+ K + N LH A + V+ LLL
Sbjct: 142 GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
T LH A R+ L MV L+ YG + +GEG + +H+A+ G ++V Y + +
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137
Query: 82 TDHQGIQRDIAAA--GTSVLANCLLMG-----------EGQTALHIASAEGDEALVKYFY 128
D G+ + AA SV LL+ TALH A G+ ++
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL 197
Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE 170
A AN + + + + LA + + +I L + +A ++
Sbjct: 198 EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAK 76
+TALH A + ++ +L++ G +VD QN +G++AL +A + ++ + A+
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLLNKKGIE-------NYNVLHLAAMYSREDVVKL 220
+ + KEN +LH AA+ +R D+VK ++K I N LH A +V
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 221 LLNKKGINVAALGGE 235
L+ K G + + + GE
Sbjct: 95 LM-KYGADPSLIDGE 108
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 109 QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA-- 166
QT LH+A + + GA + + D + TP+HLA E G + + +L
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 102
Query: 167 --SIFERTKEN-YNVLHLAAMYSREDVVKLLLN-------KKGIENYNVLHLAAMYSRED 216
SI + T N + LHLA+++ +V+LL++ ++ LHLA D
Sbjct: 103 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 162
Query: 217 VVKLLLNKKGINV 229
+V LLL K G +V
Sbjct: 163 LVSLLL-KCGADV 174
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 32/189 (16%)
Query: 17 TINGDTALHLA----ARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
T +GD+ LHLA + ++++R + ++ QN QT LH+A + +
Sbjct: 2 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 61
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
GA + + D + G T LH+A +G A V +
Sbjct: 62 LGAGCDPELRDFR----------------------GNTPLHLACEQGCLASVGVLTQSCT 99
Query: 133 NASI------TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS 186
+ T++ T +HLA+ +G+ I+ELL + LHLA
Sbjct: 100 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 159
Query: 187 REDVVKLLL 195
D+V LLL
Sbjct: 160 NPDLVSLLL 168
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNG-EGQTALHIASAEGDEALVKY 71
LKAT NG T LHLA+ L +V +LV G V+ Q G+TALH+A + LV
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 72 FYGAKANASITDHQG 86
A+ + +QG
Sbjct: 167 LLKCGADVNRVTYQG 181
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
T LHLA ++ L+ G ++++ G T LH+A +G A V G +
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV----GVLTQSCT 99
Query: 82 TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 139
T H + + A + G T LH+AS G +V+ GA NA
Sbjct: 100 TPH--LHSILKATNYN----------GHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPC 146
Query: 140 QDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV-VKLLLNKK 198
RT +HLA + + ++ LL K A + T + Y+ L + R ++ L +
Sbjct: 147 NGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQLT--WGRPSTRIQQQLGQL 203
Query: 199 GIENYNVL 206
+EN +L
Sbjct: 204 TLENLQML 211
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVD 47
I ELL + A+ NG TALHLA ++ D+V +L+ G V+
Sbjct: 129 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 175
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 10/122 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA ANA DH RTP+H+AA GH I+E+L + A +
Sbjct: 12 AGQDDEVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIVEVLL-RNGADVNAVDTNG 68
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
LHLAA ++V++LL N K L+LAA + ++V++LL K G +V
Sbjct: 69 TTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL-KHGADV 127
Query: 230 AA 231
A
Sbjct: 128 NA 129
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+T LH+A+A G +V+ A+ + D TP+HLAA GH I+E+L K+ A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL-KYGAD 93
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL 195
+ + L+LAA + ++V++LL
Sbjct: 94 VNAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 39/157 (24%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY--GAKANASITDH 84
AAR D VRIL+ G + + G+T LH+A+A G +V+ GA NA T+
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN- 67
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDR 142
G T LH+A++ G +V+ YGA NA D
Sbjct: 68 -----------------------GTTPLHLAASLGHLEIVEVLLKYGADVNAK--DATGI 102
Query: 143 TPMHLAAENGHASIIELL---------ADKFRASIFE 170
TP++LAA GH I+E+L DKF + F+
Sbjct: 103 TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFD 139
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A NG T LHLAA L++V +L+ YG V+ ++ G T L++A
Sbjct: 50 IVEVLLRNGAD-VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLA 108
Query: 61 SAEGDEALVKYF--YGAKANA 79
+ G +V+ +GA NA
Sbjct: 109 AYWGHLEIVEVLLKHGADVNA 129
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKA 77
G T LH+AA L++V +L+ G V+ + G T LH+A++ G +V+ YGA
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV 94
Query: 78 NA 79
NA
Sbjct: 95 NA 96
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVK 70
+ A G T L+LAA L++V +L+ +G V+ Q+ G+TA I+ G+E L +
Sbjct: 93 DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAE 151
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
++++L A L A +G T L LAAR MV L+ ++ + G+TALH A
Sbjct: 99 VFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWA 158
Query: 61 SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
+A + V AN D + +T L +A+ EG
Sbjct: 159 AAVNNTEAVNILLMHHANRDAQDDKD----------------------ETPLFLAAREGS 196
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
K AN ITDH DR P +A+E H I+ LL
Sbjct: 197 YEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 78/176 (44%), Gaps = 13/176 (7%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I +LL+ Q AE G+T+LHLAAR D + L+D G + Q+ G+T LH A
Sbjct: 33 ISDLLA-QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Query: 61 SAEGDEALVKYFYGAKA-NASITDHQGIQRDIAAAGTSV--LANCLLMGE---------G 108
A + + +A N + H G I AA ++ + L+ + G
Sbjct: 92 VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 151
Query: 109 QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
+TALH A+A + V AN D +D TP+ LAA G + L D F
Sbjct: 152 KTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 207
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 8/139 (5%)
Query: 90 DIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAA 149
D+ A G + N + G+T+LH+A+ K A A+A+ D+ RTP+H A
Sbjct: 35 DLLAQGAEL--NATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 92
Query: 150 ENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL------LNKKGIENY 203
+ ++L ++ R + L LAA + E +V+ L +N
Sbjct: 93 AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 152
Query: 204 NVLHLAAMYSREDVVKLLL 222
LH AA + + V +LL
Sbjct: 153 TALHWAAAVNNTEAVNILL 171
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 109 QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA-- 166
QT LH+A + + GA + + D + TP+HLA E G + + +L
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH 105
Query: 167 --SIFERTKEN-YNVLHLAAMYSREDVVKLLLN-------KKGIENYNVLHLAAMYSRED 216
SI + T N + LHLA+++ +V+LL++ ++ LHLA D
Sbjct: 106 LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD 165
Query: 217 VVKLLLNKKGINV 229
+V LLL K G +V
Sbjct: 166 LVSLLL-KCGADV 177
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 32/189 (16%)
Query: 17 TINGDTALHLA----ARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
T +GD+ LHLA + ++++R + ++ QN QT LH+A + +
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
GA + + D + G T LH+A +G A V +
Sbjct: 65 LGAGCDPELRDFR----------------------GNTPLHLACEQGCLASVGVLTQSCT 102
Query: 133 NASI------TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS 186
+ T++ T +HLA+ +G+ I+ELL + LHLA
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQ 162
Query: 187 REDVVKLLL 195
D+V LLL
Sbjct: 163 NPDLVSLLL 171
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNG-EGQTALHIASAEGDEALVKY 71
LKAT NG T LHLA+ L +V +LV G V+ Q G+TALH+A + LV
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 72 FYGAKANASITDHQG 86
A+ + +QG
Sbjct: 170 LLKCGADVNRVTYQG 184
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 20/162 (12%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
T LHLA ++ L+ G ++++ G T LH+A +G A V G +
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV----GVLTQSCT 102
Query: 82 TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 139
T H + + A + G T LH+AS G +V+ GA NA
Sbjct: 103 TPH--LHSILKATNYN----------GHTCLHLASIHGYLGIVELLVSLGADVNAQ-EPC 149
Query: 140 QDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHL 181
RT +HLA + + ++ LL K A + T + Y+ L
Sbjct: 150 NGRTALHLAVDLQNPDLVSLLL-KCGADVNRVTYQGYSPYQL 190
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVD 47
I ELL + A+ NG TALHLA ++ D+V +L+ G V+
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN 178
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 33/177 (18%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMV---RILVDYGTSVDIQNG------ 51
++ L ST+ ++ NG TAL + A D V ++LV+ G VD
Sbjct: 216 VYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE 275
Query: 52 --EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
+G+TALH A+ + +VKY G K S D Q +G+
Sbjct: 276 KYKGRTALHYAAQVSNXPIVKYLVGEKG--SNKDKQD-------------------EDGK 314
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
T + +A+ EG +V Y A+ D D T LA N H +I+++ D+ R
Sbjct: 315 TPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF-DRCRP 370
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 24/160 (15%)
Query: 89 RDIAAAGTSVLA-NCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHL 147
++ AAG V A +C + T L +A LV Y A A+ +I + +R+ +H
Sbjct: 150 KECIAAGADVNAXDC----DENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQ 205
Query: 148 AAENGH--ASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV---KLLLNK----- 197
AA N + L + K + I E + L + A D V KLL+ K
Sbjct: 206 AAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD 265
Query: 198 ------KGIENYN---VLHLAAMYSREDVVKLLLNKKGIN 228
K E Y LH AA S +VK L+ +KG N
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSN 305
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 10/186 (5%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
+ A + +T L LA R +V L G I N ++ALH A+A D Y
Sbjct: 159 VNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYX 218
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG-DEALVKYFYGAK 131
+ T +G ++ G + L + EG+ +ASA+ E K Y
Sbjct: 219 LNS------TKLKGDIEELDRNGXTALX-IVAHNEGRD--QVASAKLLVEKGAKVDYDGA 269
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
A ++ RT +H AA+ + I++ L + ++ ++ ++ + LAA R +VV
Sbjct: 270 ARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329
Query: 192 KLLLNK 197
L+ +
Sbjct: 330 XYLIQQ 335
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY--GAKANASITDH 84
AAR D VRIL+ G V+ + G T LH+A+ G +V+ GA NA T
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT-- 78
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
G T LH+A+ G +V+ A+ + D TP
Sbjct: 79 ----------------------LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITP 116
Query: 145 MHLAAENGHASIIELL---------ADKFRASIFERTKENYN 177
+HLAA GH I+E+L DKF + F+ + N N
Sbjct: 117 LHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGN 158
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 26/151 (17%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A + G T LHLAA L++V +L+ G V+ + G T LH+A+ G +V+
Sbjct: 39 DVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEV 98
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YG 129
A+ + D GI T LH+A+ G +V+ YG
Sbjct: 99 LLKNGADVNAKDDNGI----------------------TPLHLAANRGHLEIVEVLLKYG 136
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELL 160
A NA D +T ++ NG+ + E+L
Sbjct: 137 ADVNAQ--DKFGKTAFDISINNGNEDLAEIL 165
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ + A NG T LHLAA + L++V +L+ YG V+ Q+ G+TA I+ G+E
Sbjct: 101 KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 68 LVK 70
L +
Sbjct: 161 LAE 163
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
T L AA L+ V+ L+ G VD ++ EG T LH+A+ +G +V+Y
Sbjct: 46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG----- 100
Query: 82 TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQD 141
Q D+ NC G G T + A+ LVK ++ +I D+++
Sbjct: 101 ------QMDV---------NCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEE 144
Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
+H AA +G I E+L + + + LH+AA +R D V L L++
Sbjct: 145 NICLHWAAFSGCVDIAEILL-AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR 199
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 109 QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASI 168
++ LH A+ G + A AN RTP+ AAEN H ++ L K A +
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALV 70
Query: 169 FERTKENYNVLHLAAMYSREDVVKLLLNKKGIE-------NYNVLHLAAMYSREDVVKLL 221
+ E LHLAA +VV+ LL+ ++ + + A Y D+VKLL
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 222 LNK-KGINV 229
L+K IN+
Sbjct: 131 LSKGSDINI 139
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS 61
L A I+GD+ LH+AAR+ D V + + + V ++N EG+T L AS
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAA 183
VKY A A D + T +HLAA+ GH +++ L + + + + + A
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 184 MYSREDVVKLLLNK------KGIENYNVLHLAAMYSREDVVKLLLNKK 225
Y D+VKLLL+K + E LH AA D+ ++LL K
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 12/144 (8%)
Query: 20 GDTALHLAARKRDLDMVRILVDYG-TSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
G T LHLAA+K ++V+ L+ G V+ Q+ G T + A+ LVK ++
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136
Query: 79 ASITDH-QGIQRDIAA-AGTSVLANCLLMGE---------GQTALHIASAEGDEALVKYF 127
+I D+ + I AA +G +A LL + G + LHIA+ E V F
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 128 YGAKANASITDHQDRTPMHLAAEN 151
++ ++ + + TP+ A+ N
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLN 220
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 138 DHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL- 195
+HQ+ R+P+H AAE GH I +L + A+I +++ L AA + + VK L+
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLV-QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 196 -----NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ K E LHLAA +VV+ LL+ ++V
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 17 TINGDTALHLAARKRDLDMVRILVDYGTS---VDIQNGEGQTALHIASAEGDEALVKYFY 73
T +GDTALHLA + + L+ + +D+QN GQTALH+A+ G+ + V+ Y
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 74 GAKANASITDHQG-IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
A A + + G +A + C+L L + +A Y ++
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVL-------LQPRPSHPRDASDTYLTQSQD 118
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
T H P + ++ + E + +R + + + LH+A ++ ++V+
Sbjct: 119 CTPDTSH---APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175
Query: 193 LL------LNK-KGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA--LGGEDLTGRPDL 243
LL LNK + LHLA V++LLL K G + A GG G L
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPLGSALL 234
Query: 244 TVGPVQAYLYQVY 256
P+ A L + +
Sbjct: 235 RPNPILARLLRAH 247
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE---GQTALHIA 60
QL+A +G T LH+A +D +MVR+L D G D+ E G+T LH+A
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG--ADLNKPEPTCGRTPLHLA 199
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 107/253 (42%), Gaps = 24/253 (9%)
Query: 17 TINGDTALHLAARKRDLDMVRILVDYGTS---VDIQNGEGQTALHIASAEGDEALVKYFY 73
T +GDTALHLA + + L+ + +D+QN GQTALH+A+ G+ + V+ Y
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 74 GAKANASITDHQG-IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
A A + + G +A + C+L L + +A Y ++
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVL-------LQPRPSHPRDASDTYLTQSQD 118
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
T H P + ++ + E + +R + + + LH+A ++ ++V+
Sbjct: 119 CTPDTSH---APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175
Query: 193 LL------LNK-KGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA--LGGEDLTGRPDL 243
LL LNK + LHLA V++LLL K G + A GG G L
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPLGSALL 234
Query: 244 TVGPVQAYLYQVY 256
P+ A L + +
Sbjct: 235 RPNPILARLLRAH 247
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE---GQTALHIA 60
QL+A +G T LH+A +D +MVR+L D G D+ E G+T LH+A
Sbjct: 150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG--ADLNKPEPTCGRTPLHLA 199
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 12/101 (11%)
Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFE--RTKENYNVLHLAAMYSREDVVKLL 194
TD +P+HLAA+ GH S E+L RA + RTK + LH+AA ++V++L
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVL---LRAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86
Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
L N K + LH A ++ ++VV+LL+ K G +V
Sbjct: 87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLI-KYGADV 126
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G + LH+A+ G + + A + DRTP+H+AA GHA+I+E+L K A
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHGAD 92
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL 195
+ + LH A ++ ++VV+LL+
Sbjct: 93 VNAKDMLKMTALHWATEHNHQEVVELLI 120
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 26/143 (18%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKA 77
G + LHLAA+ +L+ G S D + +T LH+A++EG +V+ +GA
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
NA + L M TALH A+ + +V+ A+
Sbjct: 94 NAK--------------------DMLKM----TALHWATEHNHQEVVELLIKYGADVHTQ 129
Query: 138 DHQDRTPMHLAAENGHASIIELL 160
+T ++ +NG+ + E+L
Sbjct: 130 SKFCKTAFDISIDNGNEDLAEIL 152
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AA + DL+ + L+ +V+ QNG G+TAL + G+ + + AN + D G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTG 70
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+H A+ G ++ +A+ +I D++ P+H
Sbjct: 71 F----------------------AVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 147 LAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
LAA+ GH ++E L +++ R + LA +Y R +VV L+
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G +H AAR LD ++ L+++ V+I++ EG LH+A+ EG +V++ K A
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV--KHTA 127
Query: 80 SITDHQGIQRDIAA 93
S H+ + D A
Sbjct: 128 SNVGHRNHKGDTAC 141
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AA + DL+ + L+ +V+ QNG G+TAL + G+ + + AN + D G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTG 70
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+H A+ G ++ +A+ +I D++ P+H
Sbjct: 71 F----------------------AVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLH 108
Query: 147 LAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
LAA+ GH ++E L +++ R + LA +Y R +VV L+
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G +H AAR LD ++ L++ V+I++ EG LH+A+ EG +V++ K A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV--KHTA 127
Query: 80 SITDHQGIQRDIAA 93
S H+ + D A
Sbjct: 128 SNVGHRNHKGDTAC 141
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G + LH A EG A+V+ A ++ + D TP+HLAA +GH I++ L +++A
Sbjct: 34 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QYKAD 92
Query: 168 IFERTKENYNV-LHLAAMYSREDVVKLLL 195
I E+ NV LH A + ++ V + L+
Sbjct: 93 I-NAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 143 TPMHLAAENGHASIIELLADK-FRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGI- 200
+P+H A G ++++E+L + R ++ R + LHLAA + D+V+ LL K
Sbjct: 36 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDT--PLHLAASHGHRDIVQKLLQYKADI 93
Query: 201 ----ENYNV-LHLAAMYSREDVVKLLL 222
E+ NV LH A + ++ V + L+
Sbjct: 94 NAVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 4 LLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE 63
L T L +G + LH A R+ +V +L+ G +++ N T LH+A++
Sbjct: 18 LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 77
Query: 64 GDEALVKYFYGAKANASITDHQG 86
G +V+ KA+ + + G
Sbjct: 78 GHRDIVQKLLQYKADINAVNEHG 100
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS 80
DT LHLAA D+V+ L+ Y ++ N G LH A G + + + A S
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
Query: 81 ITDHQG 86
I + G
Sbjct: 128 ICNKYG 133
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G + LH A EG A+V+ A ++ + D TP+HLAA +GH I++ L +++A
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QYKAD 97
Query: 168 IFERTKENYNV-LHLAAMYSREDVVKLLL 195
I E+ NV LH A + ++ V + L+
Sbjct: 98 I-NAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 143 TPMHLAAENGHASIIELLADK-FRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGI- 200
+P+H A G ++++E+L + R ++ R + LHLAA + D+V+ LL K
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNRGDDT--PLHLAASHGHRDIVQKLLQYKADI 98
Query: 201 ----ENYNV-LHLAAMYSREDVVKLLL 222
E+ NV LH A + ++ V + L+
Sbjct: 99 NAVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 4 LLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE 63
L T L +G + LH A R+ +V +L+ G +++ N T LH+A++
Sbjct: 23 LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82
Query: 64 GDEALVKYFYGAKANASITDHQG 86
G +V+ KA+ + + G
Sbjct: 83 GHRDIVQKLLQYKADINAVNEHG 105
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS 80
DT LHLAA D+V+ L+ Y ++ N G LH A G + + + A S
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
Query: 81 ITDHQG 86
I + G
Sbjct: 133 ICNKYG 138
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AA + DL+ + L+ +V+ QNG G+TAL + G+ + + AN + D G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTG 70
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+H A+ G ++ +A+ +I D++ P+H
Sbjct: 71 F----------------------AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 147 LAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
LAA+ GH ++E L +++ R + LA +Y R +VV L+
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G +H AAR LD ++ L+++ V+I++ EG LH+A+ EG +V++ K A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV--KHTA 127
Query: 80 SITDHQGIQRDIAA 93
S H+ + D A
Sbjct: 128 SNVGHRNHKGDTAC 141
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G +H A+ G ++ +A+ +I D++ P+HLAA+ GH ++E L ++
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLL 194
+ R + LA +Y R +VV L+
Sbjct: 130 VGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G+ +H AAR LD ++ L+++ V+I++ EG LH+A+ EG +V++ K A
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV--KHTA 127
Query: 80 SITDHQGIQRDIAA 93
S H+ + D A
Sbjct: 128 SNVGHRNHKGDTAC 141
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 108 GQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELL----- 160
G T LH+A+ G +V+ +GA NAS D RTP+HLAA GH I+E+L
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAS--DSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 161 ----ADKFRASIFERTKENYN 177
DKF + F+ + +N N
Sbjct: 105 DVNAQDKFGKTAFDISIDNGN 125
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKA 77
G T LHLAA++ L++V +L+ +G V+ + G+T LH+A+ G +V+ YGA
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 78 NA 79
NA
Sbjct: 107 NA 108
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA D TP+HLAA+ GH I+E+L K A +
Sbjct: 24 AGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWG 80
Query: 176 YNVLHLAAMYSREDVVKLLL 195
LHLAA ++V++LL
Sbjct: 81 RTPLHLAATVGHLEIVEVLL 100
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 30/138 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
A R D VRIL+ G V+ + G T LH+A+ G +V+ +GA NAS +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDS-- 78
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDR 142
G+T LH+A+ G +V+ YGA NA D +
Sbjct: 79 ----------------------WGRTPLHLAATVGHLEIVEVLLEYGADVNAQ--DKFGK 114
Query: 143 TPMHLAAENGHASIIELL 160
T ++ +NG+ + E+L
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A+ G T LHLAA L++V +L++YG V+ Q+ G+TA I+
Sbjct: 62 IVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Query: 61 SAEGDEALVKYF 72
G+E L +
Sbjct: 121 IDNGNEDLAEIL 132
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AA + DL+ + L+ +V+ QNG G+TAL + G+ + + AN + D G
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTG 70
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+H A+ G ++ +A+ +I D++ P+H
Sbjct: 71 F----------------------AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH 108
Query: 147 LAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
LAA+ GH ++E L +++ R + LA +Y R +VV L+
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G +H AAR LD ++ L+++ V+I++ EG LH+A+ EG +V++ K A
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV--KHTA 127
Query: 80 SITDHQGIQRDIAA 93
S H+ + D A
Sbjct: 128 SNVGHRNHKGDTAC 141
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 81/197 (41%), Gaps = 20/197 (10%)
Query: 32 DLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDI 91
DL+MVR L+++ T D+++ E + A E L + A A Q+ +
Sbjct: 23 DLEMVRYLLEW-TEEDLEDAEDTVS--AADPEFCHPLCQCPKCAPA----------QKRL 69
Query: 92 AAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAEN 151
A S L + +G + LH+A+ G L+ ANA + P+HLA +
Sbjct: 70 AKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQ 129
Query: 152 GHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNV 205
GH +++ L D A ++ L A ++V LLL N +
Sbjct: 130 GHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 206 LHLAAMYSREDVVKLLL 222
LH A + VV+LLL
Sbjct: 189 LHEAVIEKHVFVVELLL 205
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
T+ +G + LH+AA D++ +L+ +G + +N + LH+A +G +VK +
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 76 KANASITDHQGIQRDIAAA--GTSVLANCLLM---------GEGQTALHIASAEGDEALV 124
A + D G I A G L LL +G TALH A E +V
Sbjct: 142 NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVV 201
Query: 125 KYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
+ A+ + + + RT + A +N + I+ELL
Sbjct: 202 ELLLLHGASVQVLNKRQRTAVDCAEQN--SKIMELL 235
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
Q + A+ G+TALH A ++ + +V +L+ +G SV + N +TA+ A
Sbjct: 173 QHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 13/81 (16%)
Query: 108 GQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELL----- 160
G T LH+A+ G +V+ +GA NAS D RTP+HLAA GH I+E+L
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNAS--DIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 161 ----ADKFRASIFERTKENYN 177
DKF + F+ + +N N
Sbjct: 105 DVNAQDKFGKTAFDISIDNGN 125
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL----ADKFRASIFER 171
+ + DE + GA NA D TP+HLAA+ GH I+E+L AD + I+ R
Sbjct: 24 AGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR 81
Query: 172 TKENYNVLHLAAMYSREDVVKLLL 195
T LHLAA ++V++LL
Sbjct: 82 TP-----LHLAATVGHLEIVEVLL 100
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A+ I G T LHLAA L++V +L++YG V+ Q+ G+TA I+
Sbjct: 62 IVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Query: 61 SAEGDEALVKYF 72
G+E L +
Sbjct: 121 IDNGNEDLAEIL 132
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKA 77
G T LHLAA++ L++V +L+ +G V+ + G+T LH+A+ G +V+ YGA
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 78 NA 79
NA
Sbjct: 107 NA 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
A R D VRIL+ G V+ + G T LH+A+ G +V+ +GA NAS
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS---- 76
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDR 142
DI G+T LH+A+ G +V+ YGA NA D +
Sbjct: 77 -----DIW---------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQ--DKFGK 114
Query: 143 TPMHLAAENGHASIIELL 160
T ++ +NG+ + E+L
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS 61
ELL + ++ T+ G + +H AAR LD +++LV++G V++ +G G +H+A
Sbjct: 58 LELLKQGASPNVQDTS--GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 115
Query: 62 AEGDEALVKYFYGAKANASITDHQGI 87
EG A+V F A+++ D +G+
Sbjct: 116 QEGHTAVVS-FLAAESDLHRRDARGL 140
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G + +H A+ G +K A+ ++ D P+HLA + GH +++ LA + +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SD 131
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLL 194
+ R L LA +D+V +L
Sbjct: 132 LHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 23/122 (18%)
Query: 39 LVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV 98
L+ G S ++Q+ G + +H A+ G +K A+ ++ D
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD--------------- 104
Query: 99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIE 158
G G +H+A EG A+V F A+++ D + TP+ LA + G +++
Sbjct: 105 -------GTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVD 156
Query: 159 LL 160
+L
Sbjct: 157 IL 158
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSV---DIQNGEGQTALHI 59
ELL ++ + L+ +G LH + + ++ L+ +V D + G T HI
Sbjct: 20 ELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 78
Query: 60 ASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
A + G+ +VK Y + + +G T LH+A +
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNK--------------------ITNQGVTCLHLAVGKK 118
Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
+ ++ A+ I D ++ P+H AA G +IELL ++++ + K+ + L
Sbjct: 119 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 180 HLAAMYSREDVVKLLLNKKGIE 201
A D LL+ K G E
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAE 200
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
L T G T LHLA K+ ++ + L++ G SV I++ Q LH A++ G L++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 73 YG-AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
G K+ + D Q G + L + L G G A+ + G E + GAK
Sbjct: 160 CGLGKSAVNWQDKQ---------GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 210
Query: 132 A 132
A
Sbjct: 211 A 211
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS 61
ELL + ++ T+ G + +H AAR LD +++LV++G V++ +G G +H+A
Sbjct: 52 LELLKQGASPNVQDTS--GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAV 109
Query: 62 AEGDEALVKYFYGAKANASITDHQGI 87
EG A+V F A+++ D +G+
Sbjct: 110 QEGHTAVVS-FLAAESDLHRRDARGL 134
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G + +H A+ G +K A+ ++ D P+HLA + GH +++ LA + +
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SD 125
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLL 194
+ R L LA +D+V +L
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 23/122 (18%)
Query: 39 LVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSV 98
L+ G S ++Q+ G + +H A+ G +K A+ ++ D
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD--------------- 98
Query: 99 LANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIE 158
G G +H+A EG A+V F A+++ D + TP+ LA + G +++
Sbjct: 99 -------GTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVD 150
Query: 159 LL 160
+L
Sbjct: 151 IL 152
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSV---DIQNGEGQTALHI 59
ELL ++ + L+ +G LH + + ++ L+ +V D + G T HI
Sbjct: 20 ELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 78
Query: 60 ASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
A + G+ +VK Y + + +G T LH+A +
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNK--------------------ITNQGVTCLHLAVGKK 118
Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
+ ++ A+ I D ++ P+H AA G +IELL ++++ + K+ + L
Sbjct: 119 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 180 HLAAMYSREDVVKLLLNKKGIE 201
A D LL+ K G E
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAE 200
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
L T G T LHLA K+ ++ + L++ G SV I++ Q LH A++ G L++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 73 YG-AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
G K+ + D Q G + L + L G G A+ + G E + GAK
Sbjct: 160 CGLGKSAVNWQDKQ---------GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 210
Query: 132 A 132
A
Sbjct: 211 A 211
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSV---DIQNGEGQTALHI 59
ELL ++ + L+ +G LH + + ++ L+ +V D + G T HI
Sbjct: 20 ELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI 78
Query: 60 ASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
A + G+ +VK Y + + +G T LH+A +
Sbjct: 79 ACSVGNLEVVKSLYDRPLKPDLNK--------------------ITNQGVTCLHLAVGKK 118
Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
+ ++ A+ I D ++ P+H AA G +IELL ++++ + K+ + L
Sbjct: 119 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Query: 180 HLAAMYSREDVVKLLLNKKGIE 201
A D LL+ K G E
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAE 200
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
L T G T LHLA K+ ++ + L++ G SV I++ Q LH A++ G L++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 73 YG-AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
G K+ + D Q G + L + L G G A+ + G E + GAK
Sbjct: 160 CGLGKSAVNWQDKQ---------GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 210
Query: 132 A 132
A
Sbjct: 211 A 211
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 72/190 (37%), Gaps = 45/190 (23%)
Query: 16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
T G+TALHLAAR D + L++ +IQ+ G+T LH A + + + +
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 76 KA-NASITDHQGIQRDIAAA------------------------GTSVL----------A 100
+A + H G I AA G S L A
Sbjct: 81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 140
Query: 101 NCLLMGEG----------QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAE 150
+L+ G +T L +A+ EG K AN ITDH DR P +A E
Sbjct: 141 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 200
Query: 151 NGHASIIELL 160
H I+ LL
Sbjct: 201 RMHHDIVRLL 210
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+TALH+A+ K A A+A+I D+ RTP+H A + ++L
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 84
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLLN 196
+ R + L LAA + E +++ L+N
Sbjct: 85 LDARMHDGTTPLILAARLAVEGMLEDLIN 113
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTS-VDIQNGEGQ-----TALHIASAEGD-EALVKY 71
NG+TALH + + +V+ L+D G VD QN G TAL + D E +++
Sbjct: 110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQL 169
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
F NA + GQTAL +A + G +VK +
Sbjct: 170 FRLGNINAKASQ-----------------------AGQTALMLAVSHGRVDVVKALLACE 206
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
A+ ++ D T + A E+GH I LL I ++ L +A + ++
Sbjct: 207 ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIA 266
Query: 192 KLLLNKKGIE 201
+L ++ I+
Sbjct: 267 SMLYSRMNIK 276
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL------- 160
G T LH+A+ G +V+ A+ + D RTP+HLAA GH I+E+L
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 161 --ADKFRASIFERTKENYN 177
DKF + F+ + +N N
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKA 77
G T LHLAA++ L++V +L+ +G V+ ++ G+T LH+A+ G +V+ YGA
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106
Query: 78 NA 79
NA
Sbjct: 107 NA 108
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA D TP+HLAA+ GH I+E+L K A + R
Sbjct: 24 AGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNARDIWG 80
Query: 176 YNVLHLAAMYSREDVVKLLL 195
LHLAA ++V++LL
Sbjct: 81 RTPLHLAATVGHLEIVEVLL 100
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 30/138 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
A R D VRIL+ G V+ + G T LH+A+ G +V+ +GA NA
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA----- 75
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDR 142
RDI G+T LH+A+ G +V+ YGA NA D +
Sbjct: 76 ----RDIW---------------GRTPLHLAATVGHLEIVEVLLEYGADVNAQ--DKFGK 114
Query: 143 TPMHLAAENGHASIIELL 160
T ++ +NG+ + E+L
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A I G T LHLAA L++V +L++YG V+ Q+ G+TA I+
Sbjct: 62 IVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Query: 61 SAEGDEALVKYF 72
G+E L +
Sbjct: 121 IDNGNEDLAEIL 132
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
+ E+L T Q+ G+T L++A D+++ + L+D G +++QN + A
Sbjct: 21 VKEILQ-DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 61 SAEGDEALVKYFYGAKANASITDHQ--GIQRDIAAAGTSVLANCLLMGE----------- 107
A+G ++ Y A + H G I AA + N L+ E
Sbjct: 80 GAQGRTEILAYML-KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138
Query: 108 -GQTAL--HIASAEGD---EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLA 161
G TAL + EG+ + +VK A+ SI D+ RT M A + G+ I ++LA
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA+ D + TP+HLAA+ H I+E+L K A + +
Sbjct: 24 AGQDDEVRILMANGADVNAN--DRKGNTPLHLAADYDHLEIVEVLL-KHGADVNAHDNDG 80
Query: 176 YNVLHLAAMYSREDVVKLLL 195
LHLAA++ ++V++LL
Sbjct: 81 STPLHLAALFGHLEIVEVLL 100
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A G+T LHLAA L++V +L+ +G V+ + +G T LH+A+ G +V+
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEV 98
Query: 72 F--YGAKANA 79
+GA NA
Sbjct: 99 LLKHGADVNA 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA 148
R + A G V AN +G T LH+A+ +V+ A+ + D+ TP+HLA
Sbjct: 31 RILMANGADVNANDR---KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLA 87
Query: 149 AENGHASIIELL---------ADKFRASIFERTKENYN 177
A GH I+E+L DKF + F+ + +N N
Sbjct: 88 ALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A +G T LHLAA L++V +L+ +G V+ Q+ G+TA I+
Sbjct: 62 IVEVLLKHGAD-VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 61 SAEGDEALVKYF 72
G+E L +
Sbjct: 121 IDNGNEDLAEIL 132
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 30/138 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA----EGDEALVKYFYGAKANASIT 82
AAR D VRIL+ G V+ + +G T LH+A+ E E L+K +GA NA
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK--HGADVNAHDN 78
Query: 83 DHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDR 142
D G T LH+A+ G +V+ A+ + D +
Sbjct: 79 D------------------------GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGK 114
Query: 143 TPMHLAAENGHASIIELL 160
T ++ +NG+ + E+L
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 71/190 (37%), Gaps = 45/190 (23%)
Query: 16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
T G+TALHLAAR D + L++ IQ+ G+T LH A + + + +
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN 77
Query: 76 KA-NASITDHQGIQRDIAAA------------------------GTSVL----------A 100
+A + H G I AA G S L A
Sbjct: 78 RATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 137
Query: 101 NCLLMGEG----------QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAE 150
+L+ G +T L +A+ EG K AN ITDH DR P +A E
Sbjct: 138 AVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 197
Query: 151 NGHASIIELL 160
H I+ LL
Sbjct: 198 RMHHDIVRLL 207
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+TALH+A+ K A A+A I D+ RTP+H A + ++L
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATD 81
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLLN 196
+ R + L LAA + E +++ L+N
Sbjct: 82 LDARMHDGTTPLILAARLALEGMLEDLIN 110
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA 148
R + A G V AN G T LH+A+ G +V+ A+ + T + RTP+HLA
Sbjct: 31 RILTANGADVNANDYW---GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLA 87
Query: 149 AENGHASIIELL---------ADKFRASIFERTKENYN 177
A H I+E+L DKF + F+ + +N N
Sbjct: 88 AWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 125
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ + AT G T LHLAA L++V +L+ +G V+ Q+ G+TA I+ G+E
Sbjct: 68 KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 68 LVKYF 72
L +
Sbjct: 128 LAEIL 132
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA+ D+ TP+HLAA GH I+E+L K A +
Sbjct: 24 AGQDDEVRILTANGADVNAN--DYWGHTPLHLAAMLGHLEIVEVLL-KNGADVNATGNTG 80
Query: 176 YNVLHLAAMYSREDVVKLLL 195
LHLAA ++V++LL
Sbjct: 81 RTPLHLAAWADHLEIVEVLL 100
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 22/134 (16%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL G V+ + G T LH+A+ G +V+ A
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA--------- 71
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
D+ A G + G+T LH+A+ +V+ A+ + D +T
Sbjct: 72 ---DVNATGNT----------GRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFD 118
Query: 147 LAAENGHASIIELL 160
++ +NG+ + E+L
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 7 TQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDE 66
T + A G T LHLAA L++V +L+ G V+ G+T LH+A+
Sbjct: 34 TANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHL 93
Query: 67 ALVKYF--YGAKANA 79
+V+ +GA NA
Sbjct: 94 EIVEVLLKHGADVNA 108
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 182 AAMYSREDVVKLL------LNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGE 235
AA ++D V++L +N + LHLAAM ++V++LL K G +V A G
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-KNGADVNATGN- 78
Query: 236 DLTGRPDLTVGPVQAYLYQVYLISKQQTAVH 266
TGR L + +L V ++ K V+
Sbjct: 79 --TGRTPLHLAAWADHLEIVEVLLKHGADVN 107
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
A NG T LHLAAR L++V++L++ G V+ Q+ G+TA I+ G+E L +
Sbjct: 34 AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL------- 160
G+ L A A G + V+ A+ + D TP+HLAA NGH +++LL
Sbjct: 7 GKKLLEAARA-GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 161 --ADKFRASIFERTKENYN 177
DKF + F+ + +N N
Sbjct: 66 NAQDKFGKTAFDISIDNGN 84
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V ++ G T LH+A+ G +VK A A+ + D G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
G T LH+A+ G +VK A A+ + D +T ++ +NG+ + E+L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
++++L A L A +G T L LAAR M+ L++ V+ + G++ALH A
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164
Query: 61 SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
+A + AN + +++ +T L +A+ EG
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNRE----------------------ETPLFLAAREGS 202
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
K AN ITDH DR P +A E H I+ LL
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+TALH+A+ K A A+A+I D+ RTP+H A + ++L
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLLN 196
+ R + L LAA + E +++ L+N
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLIN 145
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
++++L A L A +G T L LAAR M+ L++ V+ + G++ALH A
Sbjct: 106 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 165
Query: 61 SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
+A + AN + +++ +T L +A+ EG
Sbjct: 166 AAVNNVDAAVVLLKNGANKDMQNNRE----------------------ETPLFLAAREGS 203
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
K AN ITDH DR P +A E H I+ LL
Sbjct: 204 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 243
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+TALH+A+ K A A+A+I D+ RTP+H A + ++L
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 117
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLLN 196
+ R + L LAA + E +++ L+N
Sbjct: 118 LDARMHDGTTPLILAARLAVEGMLEDLIN 146
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
++++L A L A +G T L LAAR M+ L++ V+ + G++ALH A
Sbjct: 105 VFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164
Query: 61 SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
+A + AN + +++ +T L +A+ EG
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNRE----------------------ETPLFLAAREGS 202
Query: 121 EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
K AN ITDH DR P +A E H I+ LL
Sbjct: 203 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G TALH+A+A K A A+A+I D+ RTP+H A + ++L
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD 116
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLLN 196
+ R + L LAA + E +++ L+N
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLIN 145
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + DE + GA NA D TP+HLAA+ GH I+E+L K+ A + ++N
Sbjct: 24 AGQDDEVRILMANGADVNA--LDEDGLTPLHLAAQLGHLEIVEVLL-KYGADV--NAEDN 78
Query: 176 YNV--LHLAAMYSREDVVKLLL 195
+ + LHLAA+ ++V++LL
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLL 100
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 13/82 (15%)
Query: 107 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELL---- 160
+G T LH+A+ G +V+ YGA NA D+ TP+HLAA GH I+E+L
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYGADVNAE--DNFGITPLHLAAIRGHLEIVEVLLKHG 103
Query: 161 -----ADKFRASIFERTKENYN 177
DKF + F+ + +N N
Sbjct: 104 ADVNAQDKFGKTAFDISIDNGN 125
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
+G T LHLAA+ L++V +L+ YG V+ ++ G T LH+A+ G +V+ +GA
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Query: 77 ANA 79
NA
Sbjct: 106 VNA 108
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 26/136 (19%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASITDH 84
AAR D VRIL+ G V+ + +G T LH+A+ G +V+ YGA NA D+
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE--DN 78
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
GI T LH+A+ G +V+ A+ + D +T
Sbjct: 79 FGI----------------------TPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 145 MHLAAENGHASIIELL 160
++ +NG+ + E+L
Sbjct: 117 FDISIDNGNEDLAEIL 132
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
G T LHLAA + L++V +L+ +G V+ Q+ G+TA I+ G+E L +
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
A NG T LHLAAR L++V++L++ G V Q+ G+TA I+ G+E L +
Sbjct: 52 AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL------- 160
G+ L A A G + V+ A+ + D TP+HLAA NGH +++LL
Sbjct: 25 GKKLLEAARA-GQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83
Query: 161 --ADKFRASIFERTKENYN 177
DKF + F+ + +N N
Sbjct: 84 XAQDKFGKTAFDISIDNGN 102
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V ++ G T LH+A+ G +VK A A+ D G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
G T LH+A+ G +VK A A+ D +T ++ +NG+ + E+L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 22/151 (14%)
Query: 10 AEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALV 69
A L A +G T L LAAR M+ L++ V+ + G++ALH A+A +
Sbjct: 5 ATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAA 64
Query: 70 KYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG 129
AN + +++ +T L +A+ EG K
Sbjct: 65 VVLLKNGANKDMQNNK----------------------EETPLFLAAREGSYETAKVLLD 102
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELL 160
AN ITDH DR P +A E H I+ LL
Sbjct: 103 HFANRDITDHMDRLPRDIAQERMHHDIVRLL 133
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 21 DTALHLAARKRD---LDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
+TALHLA R D L +V LV ++D Q G+G TALH + +K KA
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 78 NASITDHQG 86
+ I + G
Sbjct: 230 SIEIANESG 238
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
Q + L T G TALH + + +++L+ S++I N G+T L IA
Sbjct: 193 QNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
G+G TALH + +K KA+ I + TP+ +A H ELL
Sbjct: 203 GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 108 GQTALHIASA-EGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
G+ L A A + DE + GA NA D TP+HLAA N H I+E+L K A
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAE--DKVGLTPLHLAAMNDHLEIVEVLL-KNGA 71
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLL 195
+ LHL AMY ++V++LL
Sbjct: 72 DVNAIDAIGETPLHLVAMYGHLEIVEVLL 100
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL------- 160
G T LH+A+ +V+ A+ + D TP+HL A GH I+E+L
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
Query: 161 --ADKFRASIFERTKENYN 177
DKF + F+ + +N N
Sbjct: 107 NAQDKFGKTAFDISIDNGN 125
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
G+T LHL A L++V +L+ +G V+ Q+ G+TA I+ G+E L +
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKA 77
G T LHLAA L++V +L+ G V+ + G+T LH+ + G +V+ +GA
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
Query: 78 NA 79
NA
Sbjct: 107 NA 108
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 22/134 (16%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ ++ G T LH+ A++ DH
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHL-------------------AAMNDHLE 61
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
I + G V A + G+T LH+ + G +V+ A+ + D +T
Sbjct: 62 IVEVLLKNGADVNA---IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFD 118
Query: 147 LAAENGHASIIELL 160
++ +NG+ + E+L
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIE-------NYNVLHLAAMYSREDVV 218
A + K LHLAAM ++V++LL K G + LHL AMY ++V
Sbjct: 38 ADVNAEDKVGLTPLHLAAMNDHLEIVEVLL-KNGADVNAIDAIGETPLHLVAMYGHLEIV 96
Query: 219 KLLLNKKGINVAA 231
++LL K G +V A
Sbjct: 97 EVLL-KHGADVNA 108
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 69/164 (42%), Gaps = 24/164 (14%)
Query: 19 NGDTALHLAARKRDLDMVRILVDY----GTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
+GDT LH+A + +L V LV+ G +DI N QT LH+A ++V+
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 67
Query: 75 AKANASITDHQGIQR-----------------DIAAAGTSVLANCLLMGEGQTALHIASA 117
A A+ D G D AA GT L +G TALH+A
Sbjct: 68 AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE--ARNYDGLTALHVAVN 125
Query: 118 EGDEALVKYFYGAKANASITDHQD-RTPMHLAAENGHASIIELL 160
+ V+ A+ D + R+P+ A EN S+++LL
Sbjct: 126 TECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 109 QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASI 168
QT LH+A ++V+ A A+ D +T HLA E+ + + L D
Sbjct: 47 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106
Query: 169 FERTKENYN---VLHLAAMYSREDVVKLLLNK 197
+ NY+ LH+A ++ V+LLL +
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLER 138
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVD-IQNGEGQTALHIASAEGDEALVKY 71
L+A +G TALH+A + V++L++ G +D + G++ L A ++V+
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 72 F--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG 129
+GA NA M G +ALH AS G LV+
Sbjct: 169 LLQHGANVNAQ------------------------MYSGSSALHSASGRGLLPLVRTLVR 204
Query: 130 AKANASITDHQDRTPMHLA 148
+ A++S+ + + TP+ +A
Sbjct: 205 SGADSSLKNCHNDTPLMVA 223
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
Q + A +G +ALH A+ + L +VR LV G ++N T L +A
Sbjct: 171 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 24/121 (19%)
Query: 134 ASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYN-----VLHLAAMYSRE 188
A+ D TP+H+A G+ + L + F+ R + YN LHLA + +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQG--GRELDIYNNLRQTPLHLAVITTLP 59
Query: 189 DVVKLL---------LNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTG 239
VV+LL L++ G HLA + ++ LL+ AA G DL
Sbjct: 60 SVVRLLVTAGASPMALDRHG---QTAAHLACEHRSPTCLRALLDS-----AAPGTLDLEA 111
Query: 240 R 240
R
Sbjct: 112 R 112
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
+ A +G T LHLAAR+ L++V +L+ G V+ Q+ G+TA I+ G+E L +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Query: 73 YGA 75
A
Sbjct: 88 QKA 90
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 108 GQTALHIASA-EGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL------ 160
G+ L A A + DE + GA NA D TP+HLAA GH I+E+L
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAK--DKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 161 ---ADKFRASIFERTKENYN 177
DKF + F+ + +N N
Sbjct: 61 VNAQDKFGKTAFDISIDNGN 80
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ ++ +G T LH+A+ EG +V+ A A+ + D G
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
+G T LH+A+ EG +V+ A A+ + D +T ++ +NG+ + E+L
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 33/180 (18%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G T LH A + D+V +L+ +G ++ G T +A+ G L+K F A+
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV 98
Query: 80 SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI--- 136
+ D G TA A+ G +K+ Y AN ++
Sbjct: 99 NECDFYGF----------------------TAFMEAAVYGKVKALKFLYKRGANVNLRRK 136
Query: 137 -TDHQDR------TPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRED 189
+ Q+R T + AAE GH ++++L D+ A + N L + A+ S +D
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL-IHALLSSDD 195
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 87/205 (42%), Gaps = 26/205 (12%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
NG T LAA + ++++ + G V+ + G TA A+ G +K+ Y AN
Sbjct: 71 NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130
Query: 79 ASI-----TDHQGIQR-------DIAAAGTSVLANCLL--MGE--------GQTAL-H-- 113
++ D + +++ D A G + LL MG G+ AL H
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL 190
Query: 114 IASAEGD-EALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERT 172
++S + D EA+ A+ ++ + +TP+ LA E H +++ L ++ I +
Sbjct: 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 250
Query: 173 KENYNVLHLAAMYSREDVVKLLLNK 197
+ L LA + + +LL +
Sbjct: 251 SDGKTALLLAVELKLKKIAELLCKR 275
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 32/159 (20%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G T LH A + D+V +L+ +G ++ G T +A+ G L+K F A+
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV 118
Query: 80 SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI--- 136
+ D G TA A+ G +K+ Y AN ++
Sbjct: 119 NECDFYGF----------------------TAFMEAAVYGKVKALKFLYKRGANVNLRRK 156
Query: 137 -TDHQDR------TPMHLAAENGHASIIELLADKFRASI 168
+ Q+R T + AAE GH ++++L D+ A +
Sbjct: 157 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 195
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 169 FERTKENYNVLHLAAMYSREDVVKLLL 195
F+ + + LH A SRED+V+LLL
Sbjct: 53 FQEEEGGWTPLHNAVQMSREDIVELLL 79
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 101 NCL-LMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIEL 159
NC + G T LH A+ ++V+Y A+ D P+H A GH + EL
Sbjct: 36 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 95
Query: 160 LADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
L K A + + LH AA + ++ KLLL
Sbjct: 96 LV-KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 130
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 115 ASAEGDEALVKYFYGAKA-NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTK 173
A+ GD VK ++ N + + TP+H AA S++E L + A + + K
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDK 75
Query: 174 ENYNVLHLAAMYSREDVVKLLLNKKGIEN------YNVLHLAAMYSREDVVKLLL 222
LH A Y +V +LL+ + N + LH AA + ++ KLLL
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 130
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 101 NCL-LMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIEL 159
NC + G T LH A+ ++V+Y A+ D P+H A GH + EL
Sbjct: 34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 93
Query: 160 LADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
L K A + + LH AA + ++ KLLL
Sbjct: 94 LV-KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 115 ASAEGDEALVKYFYGAKA-NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTK 173
A+ GD VK ++ N + + TP+H AA S++E L + A + + K
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDK 73
Query: 174 ENYNVLHLAAMYSREDVVKLLLNKKGIEN------YNVLHLAAMYSREDVVKLLL 222
LH A Y +V +LL+ + N + LH AA + ++ KLLL
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Query: 101 NCL-LMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIEL 159
NC + G T LH A+ ++V+Y A+ D P+H A GH + EL
Sbjct: 38 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAEL 97
Query: 160 LADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
L K A + + LH AA + ++ KLLL
Sbjct: 98 LV-KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 132
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
+G + +H AAR LD +++LV++G V+ + G +H+A EG ++V +
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 126
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 108 GQTALHIASAEG--DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR 165
G + +H A+ G D V +GA NA D P+HLA GH+S++ LA +
Sbjct: 74 GTSPVHDAARTGFLDTLKVLVEHGADVNA--LDSTGSLPIHLAIREGHSSVVSFLAPE-- 129
Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLL 194
+ + R L LA ++++ +L
Sbjct: 130 SDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
+G + +H AAR LD +++LV++G V+ + G +H+A EG ++V +
Sbjct: 75 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL 128
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 108 GQTALHIASAEG--DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR 165
G + +H A+ G D V +GA NA D P+HLA GH+S++ LA +
Sbjct: 76 GTSPVHDAARTGFLDTLKVLVEHGADVNA--LDSTGSLPIHLAIREGHSSVVSFLAPE-- 131
Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLL 194
+ + R L LA ++++ +L
Sbjct: 132 SDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+QR I L N EG TALH A G +VK+ N + D TP+H
Sbjct: 53 VQRIIYEVDDPSLPN----DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 147 LAAENGHASIIELLADKFRASIFERT 172
AA + + + L + A++F T
Sbjct: 109 CAASCNNVQVCKFLVES-GAAVFAMT 133
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
G TALH A ++V+ LV +G +V+ + +G T LH A++ + + K+
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 115 ASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE 174
+S EG+ LV+ + S+ + + T +H A GH I++ L +F ++ +
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSD 102
Query: 175 NYNVLHLAAMYSREDVVKLLL 195
+ LH AA + V K L+
Sbjct: 103 GWTPLHCAASCNNVQVCKFLV 123
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 32 DLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDI 91
+ D+V+ ++ + N EG TALH A G +VK+ N + D G
Sbjct: 49 EFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 92 AAAGTSVLANCLLMGEGQTAL 112
AA + + C + E A+
Sbjct: 109 CAASCNNVQVCKFLVESGAAV 129
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
+QR I L N EG TALH A G +VK+ N + D TP+H
Sbjct: 53 VQRIIYEVDDPSLPN----DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 147 LAAENGHASIIELLADKFRASIFERT 172
AA + + + L + A++F T
Sbjct: 109 CAASCNNVQVCKFLVES-GAAVFAMT 133
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
G TALH A ++V+ LV +G +V+ + +G T LH A++ + + K+
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 115 ASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE 174
+S EG+ LV+ + S+ + + T +H A GH I++ L +F ++ +
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSD 102
Query: 175 NYNVLHLAAMYSREDVVKLLL 195
+ LH AA + V K L+
Sbjct: 103 GWTPLHCAASCNNVQVCKFLV 123
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 32 DLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDI 91
+ D+V+ ++ + N EG TALH A G +VK+ N + D G
Sbjct: 49 EFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLH 108
Query: 92 AAAGTSVLANCLLMGEGQTAL 112
AA + + C + E A+
Sbjct: 109 CAASCNNVQVCKFLVESGAAV 129
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
E L TQ +L GDTALH AA K D+V++L+ G D++N E + A A+
Sbjct: 123 EXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATN 182
Query: 63 EGDEALVKYFYGAKA 77
+L+K G A
Sbjct: 183 AACASLLKKKQGTDA 197
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
LH A+ G+ + ++ + + D T ++ A GH I+E L + +
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 170 ERTKENYNVLHLAAMYSREDVVKLLLNK 197
++ K LH AA D+V+LLL K
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAK 162
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
T +++G L+ Y A+ SI + P+H AA+ G+ S + D R +
Sbjct: 47 TNWWKGTSKGRTGLIPSNYVAEQAESIDN-----PLHEAAKRGNLSWLRECLDN-RVGVN 100
Query: 170 ERTKENYNVLHLAAMYSREDVVKLLLNKKGIE-------NYNVLHLAAMYSREDVVKLLL 222
K L+ A +D+V+ L + IE LH AA D+V+LLL
Sbjct: 101 GLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Query: 223 NK 224
K
Sbjct: 161 AK 162
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 4 LLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE 63
+ S AEQ ++ D LH AA++ +L +R +D V+ + G TAL+ A
Sbjct: 61 IPSNYVAEQAESI----DNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG 116
Query: 64 GDEALVKYFY 73
G + +V+ +
Sbjct: 117 GHKDIVEXLF 126
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL------- 160
G T L++A+A G +V+ A+ + D TP+HLAA GH I E+L
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV 106
Query: 161 --ADKFRASIFERTKENYN 177
DKF + F+ + N N
Sbjct: 107 NAQDKFGKTAFDISIGNGN 125
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A G T LHLAA L++ +L+ +G V+ Q+ G+TA I+
Sbjct: 62 IVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 61 SAEGDEALVK 70
G+E L +
Sbjct: 121 IGNGNEDLAE 130
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 30/138 (21%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
AAR D VRIL+ G V+ ++ G T L++A+A G +V+ A+ + D G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD----EALVKYFYGAKANASITDHQDR 142
T LH+A+ G E L+K +GA NA D +
Sbjct: 81 F----------------------TPLHLAAFIGHLEIAEVLLK--HGADVNAQ--DKFGK 114
Query: 143 TPMHLAAENGHASIIELL 160
T ++ NG+ + E+L
Sbjct: 115 TAFDISIGNGNEDLAEIL 132
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 10 AEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEG 53
A L A NGDT L++AAR ++ +V L+DYG I N G
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 110/271 (40%), Gaps = 65/271 (23%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD----EALVKYFYGAKA 77
T LHLAA + +V++L+ +G V ++ G LH A + G E L+K +GA
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK--HGACV 117
Query: 78 NA----SITD-HQGIQRD--------IAAAGTSVLANCLLMGEGQTALHIA-SAEGDEAL 123
NA T H+ ++ ++ L NC G++A+ +A + E E L
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC----HGKSAVDMAPTPELRERL 173
Query: 124 VKYFYG------------AKANASIT--------DHQDRTPMHLAAENGHAS---IIELL 160
F G AK ++ T +H A + H + ELL
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL 233
Query: 161 ADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIE-------NYNVLHLAAMYS 213
K A++ E+ K+ LH+AA + DV++ +L+K G + LH AA+
Sbjct: 234 LRK-GANVNEKNKDFMTPLHVAAERAHNDVME-VLHKHGAKMNALDSLGQTALHRAALAG 291
Query: 214 REDVVKLLLNK---------KGINVAALGGE 235
+LLL+ +G A +G E
Sbjct: 292 HLQTCRLLLSYGSDPSIISLQGFTAAQMGNE 322
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
Query: 86 GIQRDIAAAGTSVLANCLLM-GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTP 144
G + + A T + NC G T LH+A+ +V+ A+ D P
Sbjct: 35 GNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVP 94
Query: 145 MHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
+H A GH + ELL K A + + LH AA +R +V LLL+
Sbjct: 95 LHNACSYGHYEVTELLL-KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS 145
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 21 DTALHLAA---RKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS--AEGDEALVKYFYGA 75
+TALH A + + +L+ G +V+ +N + T LH+A+ A D V + +GA
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 76 KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS 135
K NA L GQTALH A+ G + ++ S
Sbjct: 272 KMNA------------------------LDSLGQTALHRAALAGHLQTCRLLLSYGSDPS 307
Query: 136 ITDHQDRTPMHLAAENGHASIIELLAD 162
I Q T AA+ G+ ++ ++L++
Sbjct: 308 IISLQGFT----AAQMGNEAVQQILSE 330
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEAL 68
G TALH AA L R+L+ YG+ I + +G TA + G+EA+
Sbjct: 280 GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM----GNEAV 324
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
EG TALH A + ++V + A AN + D TP+H AA + + ++I + + A
Sbjct: 53 EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA-SCNDTVICMALVQHGA 111
Query: 167 SIFERT 172
+IF T
Sbjct: 112 AIFATT 117
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALV 69
G TALH A + +V L+ G +V+ + G T LH A++ D +
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVIC 103
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 22/137 (16%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNG-----EGQTALHIASAEGDEALVKYFYG 74
G+TALH+AA +L+ +L++ + + EGQTALHIA + LV+
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 75 AKANASITDHQGIQRDIAAAGTSVL----ANCLLMGEGQTALHIASAEGDEALVKYFYGA 130
A+ S A A SV N + GE L A+ G E +V+
Sbjct: 97 RGASVS-----------ARATGSVFHYRPHNLIYYGE--HPLSFAACVGSEEIVRLLIEH 143
Query: 131 KANASITDHQDRTPMHL 147
A+ D T +H+
Sbjct: 144 GADIRAQDSLGNTVLHI 160
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY 73
G+ L AA ++VR+L+++G + Q+ G T LHI + ++ Y
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 66/171 (38%), Gaps = 35/171 (20%)
Query: 11 EQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVK 70
E + + G TALH+A +++++VR L+ G SV SA ++
Sbjct: 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASV--------------SARATGSVFH 111
Query: 71 Y------FYGAK--ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
Y +YG + A+ + I R + G + A L G T LHI + ++
Sbjct: 112 YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL---GNTVLHILILQPNKT 168
Query: 123 LVKYFYG----------AKANASITDHQDRTPMHLAAENGHASIIELLADK 163
Y K+ + ++Q TP LA G+ + + L K
Sbjct: 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 33/160 (20%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQ---NGE-------------GQTALHIASAE 63
G TALH+A +R+ +V +LV+ G D+Q NG+ G+ L +A+
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENG--ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT 158
Query: 64 GDEALVKYFY-GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
A+VK+ + A I+ + + A V N + + T+ + +E
Sbjct: 159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXY------NEI 212
Query: 123 LVKYFYGAKANAS-----ITDHQDRTPMHLAAENGHASII 157
L+ GAK + + IT+ + TP+ LAA +G ++
Sbjct: 213 LI---LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVL 249
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 44/165 (26%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVD-------IQNGEG------QTALHIASAEGDE 66
G +ALH+A KR L V++LV+ G +V Q G+G + L +A+
Sbjct: 95 GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQW 154
Query: 67 ALVKYFYG---AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL 123
+V Y A+ TD QG +VL + + + SAE + AL
Sbjct: 155 DVVSYLLENPHQPASLQATDSQG---------NTVLHALVXISDN-------SAE-NIAL 197
Query: 124 VKYFY------GAKANAS-----ITDHQDRTPMHLAAENGHASII 157
V Y GA+ + I + QD TP+ LAA+ G I
Sbjct: 198 VTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIF 242
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
Q L A +G+TALH AA D +++L+ V N G+TAL IA
Sbjct: 214 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 178 VLHLAAMYSREDVVKLL---------LNKKGIENYNVLHLAAMYSREDVVKLLLNKKGI 227
VLHLA + + + L+ L+ K + LH AA+Y++ D +KLLL + +
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 251
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 34 DMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAA 93
+M L+++G +V+ +N EG+T L +AS G +VK A+ S D G+ + +A
Sbjct: 115 EMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASA 174
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
EG TAL A + + +N + D +TP+ + G++ + L + A
Sbjct: 67 EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GA 125
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKL 220
++ +R E L +A+ Y R ++VK LL + + + A ++ R++V+K+
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185
Query: 221 L 221
Sbjct: 186 F 186
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 28/162 (17%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ ++L+ I G TAL A + L + L+ G++V+ ++ G+T L + G
Sbjct: 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE 115
Query: 68 LVKYF---YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV 124
+ YF +GA N R++ EG+T L +AS G +V
Sbjct: 116 M-SYFLLEHGANVN---------DRNL---------------EGETPLIVASKYGRSEIV 150
Query: 125 KYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
K A+ S D T A G +I++ + RA
Sbjct: 151 KKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
Q L A +G+TALH AA D +++L+ V N G+TAL IA
Sbjct: 195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 178 VLHLAAMYSREDVVKLL---------LNKKGIENYNVLHLAAMYSREDVVKLLLNKKGI 227
VLHLA + + + L+ L+ K + LH AA+Y++ D +KLLL + +
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS 80
D+ LH AR ++ +L+D+G +N EG+ + + E L + F + S
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPE--SPLAQLFLEREGPPS 224
Query: 81 I 81
+
Sbjct: 225 L 225
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
+ +H AAR+ ++ V L+ YG ++D + T L++A A VK + A+ +
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN- 161
Query: 82 TDHQGIQRD-----IAAAGTSVLANCLLMGEG 108
QG +D +A + LA CLLM G
Sbjct: 162 ---QGKGQDSPLHAVARTASEELA-CLLMDFG 189
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 141 DRTPMHLAAENGHA-SIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
D +PMH AA +GH S+ L++ + +I T ++ + LH A + VK+LL
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 200 IEN------YNVLHLAAMYSREDVVKLLL 222
N + L A + D V LLL
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLL 89
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 141 DRTPMHLAAENGHA-SIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
D +PMH AA +GH S+ L++ + +I T ++ + LH A + VK+LL
Sbjct: 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNII--TADHVSPLHEACLGGHLSCVKILLKHGA 116
Query: 200 IEN------YNVLHLAAMYSREDVVKLLL 222
N + L A + D V LLL
Sbjct: 117 QVNGVTADWHTPLFNACVSGSWDCVNLLL 145
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE 63
D+ LH R ++ +L+D+G +N EG+ + + E
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE 265
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
+ +H AAR+ ++ V L+ YG ++D + T L++A A VK + A+ +
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN- 217
Query: 82 TDHQGIQRD-----IAAAGTSVLANCLLM 105
QG +D + + LA CLLM
Sbjct: 218 ---QGKGQDSPLHAVVRTASEELA-CLLM 242
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 25/132 (18%)
Query: 52 EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG-QT 110
EG T L A+A G A+V++ A+ L+G+G ++
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGADPQ-----------------------LLGKGRES 69
Query: 111 ALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE 170
AL +A ++G +VK + + D TP+ A H +++L + E
Sbjct: 70 ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 129
Query: 171 RTKENYNVLHLA 182
T YN + LA
Sbjct: 130 -TDSGYNSMDLA 140
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS 80
++AL LA K D+V++L+D G V+ + G T L A VK + A+ +
Sbjct: 68 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 127
Query: 81 ITDHQGIQR-DIAAA 94
I G D+A A
Sbjct: 128 IETDSGYNSMDLAVA 142
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
G TALH+AA ++V LV+ G +++++ G TAL +A
Sbjct: 109 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 25/132 (18%)
Query: 52 EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG-QT 110
EG T L A+A G A+V++ A+ L+G+G ++
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQ-----------------------LLGKGRES 71
Query: 111 ALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE 170
AL +A ++G +VK + + D TP+ A H +++L + E
Sbjct: 72 ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 131
Query: 171 RTKENYNVLHLA 182
T YN + LA
Sbjct: 132 -TDSGYNSMDLA 142
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS 80
++AL LA K D+V++L+D G V+ + G T L A VK + A+ +
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129
Query: 81 ITDHQGIQR-DIAAA 94
I G D+A A
Sbjct: 130 IETDSGYNSMDLAVA 144
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
G TALH+AA ++V LV+ G +++++ G TAL +A
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 25/132 (18%)
Query: 52 EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG-QT 110
EG T L A+A G A+V++ A+ L+G+G ++
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGADPQ-----------------------LLGKGRES 87
Query: 111 ALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE 170
AL +A ++G +VK + + D TP+ A H +++L + E
Sbjct: 88 ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE 147
Query: 171 RTKENYNVLHLA 182
T YN + LA
Sbjct: 148 -TDSGYNSMDLA 158
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS 80
++AL LA K D+V++L+D G V+ + G T L A VK + A+ +
Sbjct: 86 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 145
Query: 81 ITDHQGIQR-DIAAA 94
I G D+A A
Sbjct: 146 IETDSGYNSMDLAVA 160
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
+ ELL AE A +H AAR+ LD + +L G +D+ + G+ + +A
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118
Query: 61 SAEGDEALVKYFYGAKAN 78
+G + +Y + A +
Sbjct: 119 EEQGHRDIARYLHAATGD 136
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
ELL AE A +H AAR+ LD + +L G +D+++ G+ + +A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
Query: 63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTS 97
G + +Y A ++H I AA G S
Sbjct: 121 LGHRDVARYLRAAAGGTRGSNHARID---AAEGPS 152
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
ELL AE A +H AAR+ LD + +L G +D+++ G+ + +A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE 120
Query: 63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTS 97
G + +Y A ++H I AA G S
Sbjct: 121 LGHRDVARYLRAAAGGTRGSNHARID---AAEGPS 152
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 26/165 (15%)
Query: 25 HLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAK---ANASI 81
HLAA+ RDL + + + + D+++ ALH G + +K K S
Sbjct: 419 HLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSA 478
Query: 82 TDHQGIQRDIAAAGTSVLAN-----CLLMGEGQTALHI----------ASAEGDEALVKY 126
+D + + + +L C +G G L A E L+
Sbjct: 479 SDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDTKFRTVLIDESTQASEPECLIPI 538
Query: 127 FYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER 171
GAK + DHQ P+ L + A + + S+FER
Sbjct: 539 VKGAKQVILVGDHQQLGPVILERKAADAGL--------KQSLFER 575
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA 148
+D A G V N L G G+ LH A+ G ++++ A+ + D TP+ A
Sbjct: 19 KDYVAKGEDV--NRTLEG-GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 75
Query: 149 AENGHASIIELLADK 163
GH S ++LL K
Sbjct: 76 VYEGHVSCVKLLLSK 90
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 119 GDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV 178
GD VK + + + T R P+H AA+ G I+E L K A I K +
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITP 71
Query: 179 LHLAAMYSREDVVKLLLNK 197
L A VKLLL+K
Sbjct: 72 LLSAVYEGHVSCVKLLLSK 90
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
G+ LH A+ G L F A+ D + R P+ +A E +A I+ LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 89 RDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA 148
+D A G V N L G G+ LH A+ G ++++ A+ + D TP+ A
Sbjct: 24 KDYVAKGEDV--NRTLEG-GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80
Query: 149 AENGHASIIELLADK 163
GH S ++LL K
Sbjct: 81 VYEGHVSCVKLLLSK 95
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 119 GDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV 178
GD VK + + + T R P+H AA+ G I+E L K A I K +
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITP 76
Query: 179 LHLAAMYSREDVVKLLLNK 197
L A VKLLL+K
Sbjct: 77 LLSAVYEGHVSCVKLLLSK 95
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
G+ LH A+ G L F A+ D + R P+ +A E +A I+ LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
G+ LH A+ G L F A+ D + R P+ +A E +A I+ LL
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
>pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|B Chain B, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|C Chain C, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
pdb|1XG5|D Chain D, Structure Of Human Putative Dehydrogenase Mgc4172 In
Complex With Nadp
Length = 279
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 23 ALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASIT 82
AL + R+ M VD G ++I + G L ++ V +FY A A
Sbjct: 145 ALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLS--------VTHFYSATKYAVTA 196
Query: 83 DHQGIQRDIAAAGTSVLANCLLMG--EGQTALHIASAEGDEALVKY 126
+G+++++ A T + A C+ G E Q A + + ++A Y
Sbjct: 197 LTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATY 242
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 23 ALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
LH AA D +V+IL+ G + +G TAL+ A G+ VK F
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLF 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,325,409
Number of Sequences: 62578
Number of extensions: 318858
Number of successful extensions: 1658
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 831
Number of HSP's gapped (non-prelim): 461
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)