RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12892
(315 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 99.4 bits (248), Expect = 7e-26
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 22/146 (15%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
A +G T LHLAA L++V++L++ G V+ ++ +G+T LH+A+ G +VK
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
A+ + D +G T LH+A+ G+ +VK A+
Sbjct: 62 KGADVNARDK----------------------DGNTPLHLAARNGNLDVVKLLLKHGADV 99
Query: 135 SITDHQDRTPMHLAAENGHASIIELL 160
+ D RTP+HLAA+NGH +++LL
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLL 125
Score = 98.6 bits (246), Expect = 1e-25
Identities = 51/122 (41%), Positives = 70/122 (57%), Gaps = 7/122 (5%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
+G+T LH+A++ G +VK A+ + D+ RTP+HLAA+NGH I++LL +K A
Sbjct: 6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK-GA 64
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKL 220
+ R K+ LHLAA DVVKLLL N + + LHLAA +VVKL
Sbjct: 65 DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKL 124
Query: 221 LL 222
LL
Sbjct: 125 LL 126
Score = 97.8 bits (244), Expect = 3e-25
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 23/149 (15%)
Query: 47 DIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMG 106
+ ++ +G+T LH+A++ G +VK A+ + D+
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN---------------------- 38
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
+G+T LH+A+ G +VK A+ + D TP+HLAA NG+ +++LL A
Sbjct: 39 DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH-GA 97
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLL 195
+ R K+ LHLAA +VVKLLL
Sbjct: 98 DVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 76.3 bits (188), Expect = 3e-17
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 136 ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
D RTP+HLAA NGH +++LL + A + + + LHLAA ++VKLLL
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 196 ------NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
N + + LHLAA DVVKLLL
Sbjct: 61 EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95
Score = 50.1 bits (120), Expect = 8e-08
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 170 ERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLN 223
R ++ LHLAA +VVKLLL N K + LHLAA ++VKLLL
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61
Query: 224 KKGINVA 230
K A
Sbjct: 62 KGADVNA 68
Score = 30.8 bits (70), Expect = 0.32
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILV 40
A +G T LHLAA+ L++V++L+
Sbjct: 101 ARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 28.9 bits (65), Expect = 1.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 196 NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
N + + LHLAA +VVKLLL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLEN 29
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 67.7 bits (166), Expect = 2e-14
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 112 LHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER 171
LH+A+ G+ LVK + A + T +HLAA NG+ I++LL + A + +
Sbjct: 1 LHLAAKNGNLELVKLL--LEKGADVNLGDTDTALHLAARNGNLEIVKLLLEH-GADVNAK 57
Query: 172 TKENYNVLHLAAMYSREDVVKLLLNK 197
K+ LHLAA ++VKLLL
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLLEH 83
Score = 62.7 bits (153), Expect = 1e-12
Identities = 25/63 (39%), Positives = 44/63 (69%)
Query: 21 DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANAS 80
DTALHLAAR +L++V++L+++G V+ ++ +G TALH+A+ G+ +VK A+ +
Sbjct: 29 DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88
Query: 81 ITD 83
+ D
Sbjct: 89 LKD 91
Score = 61.9 bits (151), Expect = 2e-12
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 10/90 (11%)
Query: 146 HLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKG 199
HLAA+NG+ +++LL +K A + + LHLAA ++VKLLL N K
Sbjct: 2 HLAAKNGNLELVKLLLEK-GADV--NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 200 IENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ LHLAA ++VKLLL + G ++
Sbjct: 59 KDGNTALHLAARNGNLEIVKLLL-EHGADI 87
Score = 58.8 bits (143), Expect = 3e-11
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 28/117 (23%)
Query: 24 LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAKANASI 81
LHLAA+ +L++V++L++ G D+ G+ TALH+A+ G+ +VK +GA NA
Sbjct: 1 LHLAAKNGNLELVKLLLEKG--ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 82 TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
D G TALH+A+ G+ +VK A+ ++ D
Sbjct: 59 KD------------------------GNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 56.5 bits (137), Expect = 2e-10
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 28/109 (25%)
Query: 57 LHIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHI 114
LH+A+ G+ LVK GA N TD TALH+
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--------------------------TALHL 34
Query: 115 ASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK 163
A+ G+ +VK A+ + D T +HLAA NG+ I++LL +
Sbjct: 35 AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83
Score = 40.7 bits (96), Expect = 7e-05
Identities = 14/38 (36%), Positives = 30/38 (78%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
+ A +G+TALHLAAR +L++V++L+++G +++++
Sbjct: 54 VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 26.1 bits (58), Expect = 9.1
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 206 LHLAAMYSREDVVKLLLNKKGINV 229
LHLAA ++VKLLL KG +V
Sbjct: 1 LHLAAKNGNLELVKLLLE-KGADV 23
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 69.1 bits (168), Expect = 1e-13
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
+G LH AA K D +V++L+ G V+ ++ +G T LH+A+ G+
Sbjct: 72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIE------ 125
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
+ + + AG + N L +G T LH A+ GD +V+ A A+ + +
Sbjct: 126 --------VAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRN 177
Query: 139 HQDRTPMHLAAENGHASIIELLADK 163
T + AA+NG +++LL DK
Sbjct: 178 SYGVTALDPAAKNGRIELVKLLLDK 202
Score = 59.8 bits (144), Expect = 2e-10
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHAS-----IIELLADK- 163
LH A+++GD+ +VK + A+ + D TP+HLAA NG+ + +LL +
Sbjct: 75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134
Query: 164 -FRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIEN------YNVLHLAAMYSRED 216
R ++ LH AA+ D+V+LLL N L AA R +
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE 194
Query: 217 VVKLLLNKKGINVAA 231
+VKLLL+K
Sbjct: 195 LVKLLLDKGLHLSLL 209
Score = 49.4 bits (117), Expect = 5e-07
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 30/121 (24%)
Query: 15 ATTINGDTALHLAARK-----RDLDMVRILVDYGTSVDI---QNGEGQTALHIASAEGDE 66
A +GDT LHLAA ++++ ++L++ G +D+ ++ +G T LH A+ GD
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160
Query: 67 ALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY 126
+V+ A A+ + + G TAL A+ G LVK
Sbjct: 161 DIVELLLEAGADPNSRNS----------------------YGVTALDPAAKNGRIELVKL 198
Query: 127 F 127
Sbjct: 199 L 199
Score = 34.8 bits (79), Expect = 0.033
Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 14/121 (11%)
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
+N S + L + ++ L + R + LH AA + +
Sbjct: 31 LSNPSDKKLNLYLELALLPAASLSELLLKL--IVDRHLAARDLDGRLPLHSAASKGDDKI 88
Query: 191 VKLLL------NKKGIENYNVLHLAAMYSRE-----DVVKLLLNKKGINVAALGGEDLTG 239
VKLLL N K + LHLAA+ +V KLLL + G ++ D G
Sbjct: 89 VKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL-EAGADLDVNNLRDEDG 147
Query: 240 R 240
Sbjct: 148 N 148
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 64.6 bits (157), Expect = 1e-11
Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 33/232 (14%)
Query: 13 LKATTING-DTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+K NG DT++ L + DM++ ++D G V+I++ E +T LH A +GD +K
Sbjct: 84 IKLLIDNGVDTSI-LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKM 142
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
+ A+ +I D G +HIA ++K
Sbjct: 143 LFEYGADVNIEDDN----------------------GCYPIHIAIKHNFFDIIKLLLEKG 180
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
A A++ D+ +P+H AAE G + I+LL D I + K + LH A +++R +
Sbjct: 181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDH-GNHIMNKCKNGFTPLHNAIIHNRS-AI 238
Query: 192 KLLLNKKGI-----ENYNVLHLAAMYS-REDVVKLLL-NKKGINVAALGGED 236
+LL+N I + LH A D++ +LL +K I++ GE+
Sbjct: 239 ELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGEN 290
Score = 59.2 bits (143), Expect = 7e-10
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 33/209 (15%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASI 81
T LH A +K DL+ +++L +YG V+I++ G +HIA ++K A A++
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV 185
Query: 82 TDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQD 141
D+ G++ LH A+ GD A +K +
Sbjct: 186 KDNN----------------------GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG 223
Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS-REDVVKLLL-NKKG 199
TP+H A + S IELL + ASI ++ + LH A D++ +LL +K
Sbjct: 224 FTPLHNAIIHNR-SAIELLINN--ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD 280
Query: 200 I-----ENYNVLHLAAMY-SREDVVKLLL 222
I + N + A Y +++ V+K ++
Sbjct: 281 ISIKDNKGENPIDTAFKYINKDPVIKDII 309
Score = 46.9 bits (111), Expect = 6e-06
Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 20/161 (12%)
Query: 18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
NG +H+A + D++++L++ G ++++ G++ LH A+ GD A +K
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN 214
Query: 78 NASITDHQGIQRDIAAAGTSVLAN----CLLMG---------EGQTALHIA-SAEGDEAL 123
+ G +++ N LL+ +G T LH A + D +
Sbjct: 215 HIMNKCKNG----FTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDI 270
Query: 124 VKYFYGAKANASITDHQDRTPMHLAAE--NGHASIIELLAD 162
+ KA+ SI D++ P+ A + N I +++A+
Sbjct: 271 IDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIAN 311
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 53.8 bits (130), Expect = 6e-10
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
G TALH AA L++V+ L++ G ++ + +G TALHIA+ G+ ++K
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 49.9 bits (120), Expect = 2e-08
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
TALH A+ G LVKY + + TD T +H+AAENG+ +++LL
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 43.0 bits (102), Expect = 4e-06
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 175 NYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLL 222
LH AA+ R ++VK LL N+ + LH+AA +V+KLLL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 41.8 bits (99), Expect = 9e-06
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
RT +H AA +G +++ L +K I ++ LH+AA +V+KLLL
Sbjct: 2 RTALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 34.1 bits (79), Expect = 0.005
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 22/73 (30%)
Query: 55 TALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHI 114
TALH A+ G LVKY + + TD +G TALHI
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTD----------------------EDGNTALHI 40
Query: 115 ASAEGDEALVKYF 127
A+ G+ ++K
Sbjct: 41 AAENGNLEVLKLL 53
Score = 32.2 bits (74), Expect = 0.025
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 202 NYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLT 238
LH AA+ R ++VK LL +KG+++ + T
Sbjct: 1 GRTALHKAAISGRLELVKYLL-EKGVDINRTDEDGNT 36
Score = 30.7 bits (70), Expect = 0.10
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILV 40
T +G+TALH+AA +L+++++L+
Sbjct: 29 RTDEDGNTALHIAAENGNLEVLKLLL 54
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 56.2 bits (135), Expect = 7e-09
Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 29/216 (13%)
Query: 16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
+G + + LA + RD + +++L+ +G D++ + ++ LH A EGD V+
Sbjct: 31 EIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE----- 85
Query: 76 KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS 135
++ G A+ + +G T LH+A+ ++K A+
Sbjct: 86 --------------ELLDLGK--FADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD 129
Query: 136 ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
I + +P+HLA G IELL D +A + L +A + K+LL
Sbjct: 130 IPNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPLIIAMAKGDIAICKMLL 188
Query: 196 NKKGIENY-------NVLHLAAMYSREDVVKLLLNK 224
+ +Y L A ++ D+V+L + +
Sbjct: 189 DSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224
Score = 39.6 bits (92), Expect = 0.002
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 25/132 (18%)
Query: 142 RTPMHLAAENGHASIIELLAD--KFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
+ +H A E G +E L D KF +F K+ LHLA + + D++KLL+ +
Sbjct: 69 ESELHDAVEEGDVKAVEELLDLGKFADDVF--YKDGMTPLHLATILKKLDIMKLLIARGA 126
Query: 200 ------IENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLY 253
+ ++ LHLA M ++LL++ K A L ED G L
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK----ACLDIEDCCGCTPL---------- 172
Query: 254 QVYLISKQQTAV 265
+ ++K A+
Sbjct: 173 -IIAMAKGDIAI 183
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 53.9 bits (130), Expect = 4e-08
Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 46/230 (20%)
Query: 24 LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITD 83
L+LA R++D+V+IL+D G ++ T LH S ++TD
Sbjct: 39 LYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNI--------------KYNLTD 84
Query: 84 HQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE--GDEALVKYF--YGAKANASITDH 139
+ I + + G +V A G T L A ++ ++V+Y GA N +D
Sbjct: 85 VKEIVKLLLEYGANVNAP---DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDG 141
Query: 140 QDRTPMHLAAENGHA--SIIELLADK---------------FRASIFERTKENYNVLHLA 182
+ +HL E+ I++LL DK + I + + LH A
Sbjct: 142 E--NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYA 199
Query: 183 AMYSREDVVKLLLNKKG----IENYNV--LHLAAMYSREDVVKLLLNKKG 226
+ + VK LL+ + Y LH+A + + +++ KLLLN
Sbjct: 200 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249
Score = 50.0 bits (120), Expect = 7e-07
Identities = 43/198 (21%), Positives = 71/198 (35%), Gaps = 51/198 (25%)
Query: 30 KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE--GDEALVKYF--YGAKANASITDHQ 85
++V++L++YG +V+ + G T L A ++ ++V+Y GA N +D
Sbjct: 83 TDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD-- 140
Query: 86 GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL------------------VKYF 127
G+ LH+ L V Y
Sbjct: 141 ----------------------GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYL 178
Query: 128 --YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY 185
YG N I D TP+H A N + ++ L D A+ K LH+A +
Sbjct: 179 LSYGVPIN--IKDVYGFTPLHYAVYNNNPEFVKYLLDL-GANPNLVNKYGDTPLHIAILN 235
Query: 186 SREDVVKLLLNKKGIENY 203
+ +++ KLLLN
Sbjct: 236 NNKEIFKLLLNNGPSIKT 253
Score = 42.3 bits (100), Expect = 2e-04
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
+ G T LH A + + V+ L+D G + ++ N G T LHIA ++ + K
Sbjct: 190 VYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 249
Query: 78 NASITD 83
+
Sbjct: 250 SIKTII 255
Score = 35.4 bits (82), Expect = 0.031
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 20/87 (22%)
Query: 13 LKATTINGDTALHLAAR--KRDLDMVRILVD----------------YGTSVDIQNGEGQ 54
+ +G+ LHL K DL ++++L+D YG ++I++ G
Sbjct: 134 VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGF 193
Query: 55 TALHIASAEGDEALVKYF--YGAKANA 79
T LH A + VKY GA N
Sbjct: 194 TPLHYAVYNNNPEFVKYLLDLGANPNL 220
Score = 31.2 bits (71), Expect = 0.73
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 10/76 (13%)
Query: 173 KENYNVLHLAAMYSREDVVKLLLNK--------KGIENYNVLHLAAMYSREDVVKL--LL 222
K+ L+LA DVVK+LL+ K Y+ DV ++ LL
Sbjct: 33 KKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL 92
Query: 223 NKKGINVAALGGEDLT 238
+ G NV A +T
Sbjct: 93 LEYGANVNAPDNNGIT 108
Score = 28.9 bits (65), Expect = 3.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDI 48
GDT LH+A + ++ ++L++ G S+
Sbjct: 220 LVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 53.0 bits (127), Expect = 9e-08
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 91 IAAAGTSVLANCLLMG---------EGQTALHIASAEGDEALVKYFYGAKANASITDHQD 141
+AA+G +V A LL G +G+T LHIA A G +V+ A+ ++ D
Sbjct: 89 LAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG 148
Query: 142 RTPMHLAAENGHASIIELL 160
+TP+ LA ENG +++LL
Sbjct: 149 KTPLELAEENGFREVVQLL 167
Score = 34.5 bits (79), Expect = 0.080
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 25 HLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDH 84
LAA D RIL+ G + ++ +G+T LHIA A G +V+ A+ ++ D
Sbjct: 88 QLAASG-DAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146
Query: 85 QG 86
G
Sbjct: 147 DG 148
Score = 31.0 bits (70), Expect = 0.90
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG 64
+G T LH+A + +VR+L+++G + + +G+T L +A G
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG 159
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 52.6 bits (126), Expect = 1e-07
Identities = 69/288 (23%), Positives = 111/288 (38%), Gaps = 66/288 (22%)
Query: 24 LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY----------FY 73
LH A R+LD+V+ L+ G +V+ + T LHI E ++ +K FY
Sbjct: 41 LHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFY 100
Query: 74 GAKA-----------------------NASITDHQ------------GIQRDIAAAGTSV 98
A +I I + + + G +
Sbjct: 101 TLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI 160
Query: 99 LANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASI 156
N +G TALH A+ D+ L + YGA N I D + +P+H A ++ + I
Sbjct: 161 --NMKDRHKGNTALHYATENKDQRLTELLLSYGANVN--IPDKTNNSPLHHAVKHYNKPI 216
Query: 157 IELLADKFRASIFERTKENYNVLHLAAMYSRE-DVVKLLLN-------KKGIENYNVLHL 208
+ +L + AS R K LH++ Y ++ D++KLLL K I LH
Sbjct: 217 VHILL-ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHS 275
Query: 209 AAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVY 256
+ E +KLLL + G ++ +L LT L+ Q +
Sbjct: 276 S--IKSERKLKLLL-EYGADINSLNSYKLT---PLSSAVKQYLCINIG 317
Score = 41.4 bits (97), Expect = 4e-04
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 19/163 (11%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I +LL + A+ G+TALH A +D + +L+ YG +V+I + + LH A
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208
Query: 61 SAEGDEALVKYFYGAKANASITDHQG---------------IQRDIAAAGTSVLANCLLM 105
++ +V A+ D G I + + G V A ++
Sbjct: 209 VKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYIL 268
Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA 148
G TALH + + + YGA N + TP+ A
Sbjct: 269 --GLTALHSSIKSERKLKLLLEYGADIN--SLNSYKLTPLSSA 307
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 47.0 bits (112), Expect = 2e-07
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
AT NG+T LHLAA+ L++V+ L+ G +++++ +G TAL +A
Sbjct: 11 ATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 34.6 bits (80), Expect = 0.005
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLA 182
+ + TD TP+HLAA+ G +++ L K + R + L LA
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56
Score = 32.3 bits (74), Expect = 0.025
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLA 148
G G T LH+A+ G LV++ + ++ D T + LA
Sbjct: 14 GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 30.8 bits (70), Expect = 0.090
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 160 LADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLA 209
L + + LHLAA Y ++V+ LL N + + L LA
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 30.0 bits (68), Expect = 0.19
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 39 LVDYGT-SVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
L+++G ++ +G G T LH+A+ G LV++ + ++ D G
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDG 49
Score = 26.2 bits (58), Expect = 4.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 194 LLNKKGIENYNVLHLAAMYSREDVVKLLLNK 224
LN LHLAA Y ++V+ LL
Sbjct: 8 DLNATDGNGNTPLHLAAKYGALELVQWLLKP 38
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities. Repeats 13-24 are
especially active, with known sites of interaction for
the Na/K ATPase, Cl/HCO(3) anion exchanger,
voltage-gated sodium channel, clathrin heavy chain and
L1 family cell adhesion molecules. The ANK repeats are
found to form a contiguous spiral stack such that ion
transporters like the anion exchanger associate in a
large central cavity formed by the ANK repeat spiral,
while clathrin and cell adhesion molecules associate
with specific regions outside this cavity.
Length = 33
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
+G+T LHLAAR L++V++L++ G V+ ++
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 52 EGQTALHIASAEGDEALVKYFYGAKANASITDH 84
+G T LH+A+ G +VK A A+ + D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDH 139
+G T LH+A+ G +VK A A+ + D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 32.9 bits (76), Expect = 0.011
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 142 RTPMHLAAENGHASIIELLADKFRASIFERTK 173
TP+HLAA NGH +++LL + A + R K
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEA-GADVNARDK 33
Score = 30.6 bits (70), Expect = 0.067
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 206 LHLAAMYSREDVVKLLLNKKGINV 229
LHLAA +VVKLLL + G +V
Sbjct: 6 LHLAARNGHLEVVKLLL-EAGADV 28
Score = 29.4 bits (67), Expect = 0.16
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 179 LHLAAMYSREDVVKLLLNK 197
LHLAA +VVKLLL
Sbjct: 6 LHLAARNGHLEVVKLLLEA 24
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 48.9 bits (117), Expect = 2e-06
Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 44/218 (20%)
Query: 13 LKATTINGDTALHLAARKRD-LDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A G T LHL LD++++L+ G V+ ++ G+T LH+ Y
Sbjct: 76 VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHV-----------Y 124
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLA-NCLLMGEGQTALHI--ASAEGDEALVKYFY 128
G N + R + G V A + M T L + S + L++
Sbjct: 125 LSGFNINPKVI------RLLLRKGADVNALDLYGM----TPLAVLLKSRNANVELLRLLI 174
Query: 129 GAKANASITDHQDRTPMHLAAENGHAS------IIELLADKFRASIFERTKENYNVLHLA 182
A A+ D + R+ +H ++ +I D + T LH
Sbjct: 175 DAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNT-----PLHSM 229
Query: 183 AMYS---REDVVKLLLNKKGI--EN---YNVLHLAAMY 212
A S R V+ LL+ I N LH AA++
Sbjct: 230 ATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVF 267
Score = 43.9 bits (104), Expect = 8e-05
Identities = 49/230 (21%), Positives = 87/230 (37%), Gaps = 44/230 (19%)
Query: 20 GDTALHLAARKR---DLDMVRILVDYGTSVDIQNGEGQTALH--IASAEGDEALVKYFYG 74
G T LHL D+VR+L++ G V+ G T LH + +A ++K
Sbjct: 47 GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNAT-TLDVIKLLIK 105
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHI--ASAEGDEALVKYFYGAKA 132
A A+ V A + G+T LH+ + + +++ A
Sbjct: 106 AGAD-------------------VNAKDKV---GRTPLHVYLSGFNINPKVIRLLLRKGA 143
Query: 133 NASITDHQDRTPMHLAAENGHASI--IELLADKFRASIFERTKENYNVLHLAAMY--SRE 188
+ + D TP+ + ++ +A++ + LL D A ++ ++LH R
Sbjct: 144 DVNALDLYGMTPLAVLLKSRNANVELLRLLIDA-GADVYAVDDRFRSLLHHHLQSFKPRA 202
Query: 189 DVVKLLL------NKKGIENYNVLHLAAMYS---REDVVKLLLNKKGINV 229
+V+ L+ + LH A S R V+ LL+ IN
Sbjct: 203 RIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252
Score = 39.6 bits (93), Expect = 0.002
Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 17/160 (10%)
Query: 15 ATTINGDTALHLAARKR--DLDMVRILVDYGTSVDIQNGEGQTALHI--ASAEGDEALVK 70
A + G T L + + R +++++R+L+D G V + ++ LH S + +V+
Sbjct: 147 ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVR 206
Query: 71 YFYGAKANASITDHQGIQRDIAAA-----GTSVLANCLLMG--------EGQTALHIASA 117
A + + TD G + A S++ L+ G GQT LH A+
Sbjct: 207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV 266
Query: 118 EGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASII 157
+ + A+ + TP+ L N + +
Sbjct: 267 FNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAV 306
Score = 32.3 bits (74), Expect = 0.29
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 19/88 (21%)
Query: 175 NYNVLHLAAMYS---REDVVKLLL------NKKGIENYNVLHLAAMYS-REDVVKLLLNK 224
LHL YS +D+V+LLL N + LHL + DV+KLL+ K
Sbjct: 47 GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLI-K 105
Query: 225 KGINVAALGGEDLTGRPDLTVGPVQAYL 252
G +V A T P+ YL
Sbjct: 106 AGADVNAKDKVGRT--------PLHVYL 125
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 39.9 bits (94), Expect = 4e-05
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDI 48
+G T LHLAA +L++V++L+D G ++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 31.4 bits (72), Expect = 0.031
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 140 QDRTPMHLAAENGHASIIELLADK 163
RTP+HLAAENG+ +++LL DK
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDK 24
Score = 29.1 bits (66), Expect = 0.21
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 174 ENYNVLHLAAMYSREDVVKLLLNKKG 199
+ LHLAA +VVKLLL+K
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGA 26
Score = 29.1 bits (66), Expect = 0.21
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 201 ENYNVLHLAAMYSREDVVKLLLNKKG 226
+ LHLAA +VVKLLL+K
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGA 26
Score = 27.9 bits (63), Expect = 0.53
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 52 EGQTALHIASAEGDEALVKYFYGAKAN 78
+G+T LH+A+ G+ +VK A+
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGAD 27
Score = 27.9 bits (63), Expect = 0.53
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKAN 133
+G+T LH+A+ G+ +VK A+
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGAD 27
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 44.7 bits (106), Expect = 4e-05
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 53/182 (29%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQ-NGE-------------GQTALHIASAEGD 65
G TALHLAA +++ ++V++L++ G SV + G+ G++ L+ A+ G
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187
Query: 66 EALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD----- 120
++V D +L L G T LH+ E +
Sbjct: 188 PSIVAL--------LSED-----------PADILTADSL---GNTLLHLLVMENEFKAEY 225
Query: 121 EALVKYFY------GAKANAS-----ITDHQDRTPMHLAAENGHASIIEL-LADKFRASI 168
E L Y K S I +HQ TP+ LAA+ G + L LA K++
Sbjct: 226 EELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKK 285
Query: 169 FE 170
F
Sbjct: 286 FV 287
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 44.5 bits (105), Expect = 6e-05
Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 24/142 (16%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G T LH+AA K D V +L+ + +V I++ G TAL A + + + Y A
Sbjct: 558 GRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHF---A 614
Query: 80 SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDH 139
SI+D A +L C A+ D +K N DH
Sbjct: 615 SISDPH--------AAGDLL--CT-----------AAKRNDLTAMKELLKQGLNVDSEDH 653
Query: 140 QDRTPMHLAAENGHASIIELLA 161
Q T + +A H ++ LL
Sbjct: 654 QGATALQVAMAEDHVDMVRLLI 675
Score = 44.1 bits (104), Expect = 8e-05
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY--GA 75
GD L AA++ DL ++ L+ G +VD ++ +G TAL +A AE +V+ GA
Sbjct: 621 AAGDL-LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA 679
Query: 76 KANASITD 83
+ + TD
Sbjct: 680 DVDKANTD 687
Score = 37.2 bits (86), Expect = 0.012
Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 39/188 (20%)
Query: 48 IQNGEGQTALHIAS------AEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLAN 101
NG ++AS + G+ AL++ AK + I D
Sbjct: 514 GDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGD------------------ 555
Query: 102 CLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLA 161
+G+T LHIA+++G E V N I D T + A H I +L
Sbjct: 556 ----SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILY 611
Query: 162 DKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGI----ENYN---VLHLAAMYSR 214
S ++L AA + +K LL K+G+ E++ L +A
Sbjct: 612 HFASIS---DPHAAGDLLCTAAKRNDLTAMKELL-KQGLNVDSEDHQGATALQVAMAEDH 667
Query: 215 EDVVKLLL 222
D+V+LL+
Sbjct: 668 VDMVRLLI 675
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 41.2 bits (96), Expect = 5e-04
Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 21/229 (9%)
Query: 16 TTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--- 72
T +G+ LH+A++ + +V +L+ +G + + + +T L+ S DE + +
Sbjct: 68 TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV 127
Query: 73 -YGAKANASITDHQGIQRDIAAAGTSVLANCLLM------------GEGQTALHIASAEG 119
YGAK N S+ D +G +A S +M G+ H+ S
Sbjct: 128 QYGAKINNSV-DEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNP 186
Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAEN--GHASIIELLADKFRASIFERTKENYN 177
+ + + + S DH TP+H+ + II LL + + ++
Sbjct: 187 KASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPL 246
Query: 178 VLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
L + + + KLL I + V ++ Y R+DV++ ++N KG
Sbjct: 247 TLLIKTLSPAHLINKLLSTSNVITDQTV-NICIFYDRDDVLE-IINDKG 293
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 35.7 bits (83), Expect = 9e-04
Identities = 12/30 (40%), Positives = 24/30 (80%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDI 48
+G+T LHLAAR +L++V++L+++G ++
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 29.1 bits (66), Expect = 0.24
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 201 ENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
+ LHLAA ++VKLLL G ++ A
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLE-HGADINA 30
Score = 28.8 bits (65), Expect = 0.33
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 174 ENYNVLHLAAMYSREDVVKLLLNK 197
+ LHLAA ++VKLLL
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEH 24
Score = 28.4 bits (64), Expect = 0.38
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 142 RTPMHLAAENGHASIIELLADK 163
TP+HLAA NG+ +++LL +
Sbjct: 3 NTPLHLAARNGNLELVKLLLEH 24
Score = 26.1 bits (58), Expect = 2.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 52 EGQTALHIASAEGDEALVKYF--YGAKANA 79
+G T LH+A+ G+ LVK +GA NA
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 26.1 bits (58), Expect = 2.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 107 EGQTALHIASAEGDEALVKYF--YGAKANA 134
+G T LH+A+ G+ LVK +GA NA
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 36.6 bits (84), Expect = 0.014
Identities = 63/256 (24%), Positives = 106/256 (41%), Gaps = 35/256 (13%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I E+L A+ + A I T +H AA + + MV +L+ YG V+I + + L A
Sbjct: 160 IAEMLLEGGAD-VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECA 218
Query: 61 SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG----------QT 110
+ +K ++N + D ++ A + + LL G T
Sbjct: 219 VDSKNIDTIKAIIDNRSNINKNDLSLLK---AIRNEDLETSLLLYDAGFSVNSIDDCKNT 275
Query: 111 ALHIAS-AEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGH-----ASIIELLADKF 164
LH AS A LV A+ + + + TP++L A+NG+ ++I L AD
Sbjct: 276 PLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-- 333
Query: 165 RASIFERTKENYNV-LHLAAMYSR-EDVVKLLL------NKKGIENYNVLHLAAMYSRED 216
Y LH A+ R +D+V LL N + + +H AA+ +
Sbjct: 334 ----VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVV 389
Query: 217 VVKLLLNKKGINVAAL 232
++ LL+ G ++ AL
Sbjct: 390 IINTLLD-YGADIEAL 404
Score = 28.1 bits (62), Expect = 7.7
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 22 TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
T +H AA + ++ ++ L+DYG ++ + + TALH A
Sbjct: 377 TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 34.2 bits (78), Expect = 0.043
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 17 TINGDTALHLAARKRDLDMVRILV-DYGTSVDIQNGEGQTALHIASAEGDEALVK 70
+ GDTALHLAA +RD D+ L G + N + ++ +A D A+++
Sbjct: 95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQ 149
Score = 28.1 bits (62), Expect = 4.5
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 24/163 (14%)
Query: 5 LSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDY--GTSV----DIQNGEGQTALH 58
T E + G+ H AAR D++ + G + + GQ +H
Sbjct: 6 FMTCLEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIH 65
Query: 59 IASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE 118
IA AE EA A+ I DH + G + N M EG TALH+A+
Sbjct: 66 IA-AEKHEA----QLAAE----IIDH------LIELGADI--NAQEMLEGDTALHLAAHR 108
Query: 119 GDEALVKYF-YGAKANASITDHQDRTPMHLAAENGHASIIELL 160
D L ++ + + +++P LA +N +++++L
Sbjct: 109 RDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQIL 151
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 31.7 bits (72), Expect = 0.34
Identities = 20/110 (18%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 101 NCLLMGEGQTALH---IASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASI- 156
N +ALH + + ++K + ++ + D + +H+ N + I
Sbjct: 80 NFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRIN 139
Query: 157 -IELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNV 205
I+LL D S + +N N+L+ ++ + + L GI+
Sbjct: 140 VIKLLID-SGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINET 188
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 32.3 bits (73), Expect = 0.35
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE 63
G+T LH A R +V +L++ G+ V+I++ G T + IA E
Sbjct: 452 GETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINE 495
>gnl|CDD|239166 cd02765, MopB_4, The MopB_4 CD includes a group of related
uncharacterized bacterial and archaeal
molybdopterin-binding oxidoreductase-like domains with a
putative N-terminal iron-sulfur [4Fe-4S] cluster binding
site and molybdopterin cofactor binding site. These
members belong to the molybdopterin_binding (MopB)
superfamily of proteins.
Length = 567
Score = 29.8 bits (67), Expect = 2.3
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 215 EDVVKLLLN-----KKGINVAALGGEDLTGRPDLTVGPVQAYLYQVY 256
ED V+ +N GI AL E + R P AYL Q +
Sbjct: 494 EDYVRAFMNSDDPALDGITWEALKEEGIIMRLATPEDPYVAYLDQKF 540
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 29.4 bits (66), Expect = 2.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 129 GAKANASITDHQDRTPMHL 147
GA ANAS+T ++ PM L
Sbjct: 227 GADANASVTGNESTVPMQL 245
>gnl|CDD|182922 PRK11040, PRK11040, peptidase PmbA; Provisional.
Length = 446
Score = 29.3 bits (66), Expect = 3.1
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 5 LSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG 64
+ +Q A Q K TAL LA+ K D V + G SV + GE + +++G
Sbjct: 3 VISQVAAQRKILEEAVSTALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEF--NSDG 60
Query: 65 DEALVKYFYGAKANASITD--HQGIQRDIAAA 94
+ Y K +AS TD Q I R + AA
Sbjct: 61 ALGITVYHQQRKGSASSTDLSPQAIARTVQAA 92
>gnl|CDD|205005 pfam12668, DUF3791, Protein of unknown function (DUF3791). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 71 and 125 amino acids
in length.
Length = 62
Score = 26.3 bits (59), Expect = 4.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 154 ASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAA-MY 212
IE A K S KE YN+L + V+ + IE Y+VLH + Y
Sbjct: 5 IFCIEAYARKLGIS----GKEAYNLL------KKYGVIDYI-----IECYDVLHTQSKEY 49
Query: 213 SREDVVKLLLNK 224
ED++++L +
Sbjct: 50 IVEDIIEVLKER 61
>gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 28.8 bits (65), Expect = 4.3
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 244 TVGPVQAYLYQVYLISKQQT--AVHLVCSRQT 273
TV VQA Y+V L Q L+C+R+T
Sbjct: 12 TVVAVQANFYRVQLDEPQNLNPPSLLLCTRRT 43
>gnl|CDD|132904 cd06928, RNAP_alpha_NTD, N-terminal domain of the Alpha subunit of
Bacterial RNA polymerase. The bacterial alpha subunit
of RNA polymerase (RNAP) consists of two independently
folded domains: an amino-terminal domain (alphaNTD) and
a carboxy-terminal domain (alphaCTD). AlphaCTD is not
required for RNAP assembly but interacts with
transcription activators. AlphaNTD is essential in vivo
and in vitro for RNAP assembly and basal transcription.
It is similar to the eukaryotic RPB3/AC40/archaeal D
subunit, and contains two subdomains: one subdomain is
similar the eukaryotic Rpb11/AC19/archaeal L subunit
which is involved in dimerization; and the other is an
inserted beta sheet subdomain. The alphaNTDs of plant
plastid RNAP (PEP) are also included in this subfamily.
PEP is largely responsible for the transcription of
photosynthetic genes and is closely related to the
multi-subunit bacterial RNAP, which is a large
multi-subunit complex responsible for the synthesis of
all bacterial RNAs. The bacterial RNAP core enzyme
consists of four subunits (beta', beta, alpha and
omega). All residues in the alpha subunit that is
involved in dimerization or in the interaction with
other subunits are located within alphaNTD.
Length = 215
Score = 27.8 bits (63), Expect = 5.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 187 REDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
REDV+++LLN K I V S ++ L L KG
Sbjct: 62 REDVLEILLNLKEI----VF---KSDSEDEPQVLRLKVKG 94
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 28.1 bits (62), Expect = 6.5
Identities = 44/187 (23%), Positives = 74/187 (39%), Gaps = 42/187 (22%)
Query: 24 LHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITD 83
LH AA D +V+IL+ G + +G TAL+ A G+ VK F
Sbjct: 65 LHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLF----------- 113
Query: 84 HQGIQRDIAAAGTSVLANCLLMGEG----QTALHIASAEGDEALVKYFYGAKANASITDH 139
V N LM G +T+ + A D ++V YF ++ ++
Sbjct: 114 --------------VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL-SEIPSTFDLA 158
Query: 140 QDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKG 199
+ +H+ +NGH ++ LL D + T N ++L + +KL ++ K
Sbjct: 159 ILLSCIHITIKNGHVDMMILLLDYMTS-----TNTNNSLLFIPD-------IKLAIDNKD 206
Query: 200 IENYNVL 206
+E L
Sbjct: 207 LEMLQAL 213
>gnl|CDD|235359 PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha;
Provisional.
Length = 310
Score = 27.8 bits (63), Expect = 7.3
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 187 REDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
REDV +++LN KG+ L ++ E V L L+KKG
Sbjct: 72 REDVTEIILNLKGL----RL---KLHGDEPVT-LTLSKKGPGE 106
>gnl|CDD|136007 PRK06698, PRK06698, bifunctional
5'-methylthioadenosine/S-adenosylhomocysteine
nucleosidase/phosphatase; Validated.
Length = 459
Score = 28.1 bits (62), Expect = 7.6
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 168 IFERTKENYNVLHLAA----MYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLN 223
IF KEN +++A+ Y R V L++ E +++ + ++ ++ D+VK +LN
Sbjct: 338 IFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSIEQINSL-NKSDLVKSILN 396
Query: 224 KKGINVAALGGEDLT 238
K I AA+ G+ L+
Sbjct: 397 KYDIKEAAVVGDRLS 411
>gnl|CDD|133469 cd01414, SAICAR_synt_Sc, non-metazoan
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR) synthase. Eukaryotic,
bacterial, and archaeal group of SAICAR synthetases
represented by the Saccharomyces cerevisiae (Sc) enzyme,
mostly absent in metazoans. SAICAR synthetase catalyzes
the seventh step of the de novo biosynthesis of purine
nucleotides (also reported as eighth step). It converts
5-aminoimidazole-4-carboxyribonucleotide (CAIR), ATP,
and L-aspartate into
5-aminoimidazole-4-(N-succinylcarboxamide)
ribonucleotide (SAICAR), ADP, and phosphate.
Length = 279
Score = 27.5 bits (62), Expect = 7.8
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVD 41
E++ + A++L+ + A KR L IL D
Sbjct: 156 AVEIIGAELADELRELALALYERAAEYAAKRGL----ILAD 192
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 27.1 bits (60), Expect = 8.5
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 108 GQTALHIASAEGDEALVKYF-YGAKANASITDHQDRTPMHLAAENGHASIIELLADK 163
G T LHIA + L + N I ++ +TP ++A E A ++ +L K
Sbjct: 92 GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.132 0.363
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,606,772
Number of extensions: 1517192
Number of successful extensions: 1569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1489
Number of HSP's successfully gapped: 126
Length of query: 315
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 218
Effective length of database: 6,635,264
Effective search space: 1446487552
Effective search space used: 1446487552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)