RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12892
(315 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 157 bits (399), Expect = 6e-45
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 30/221 (13%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
+G T LH+A+ L +V+ L+ G S ++ N + +T LH+A+ G + KY
Sbjct: 9 GGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
KA + + QT LH A+ G +VK AN
Sbjct: 69 NKAKVNAKAK----------------------DDQTPLHCAARIGHTNMVKLLLENNANP 106
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
++ TP+H+AA GH + L +K AS TK+ + LH+AA Y + V +LL
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
L N G LH+A ++ D+VKLLL +G +
Sbjct: 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL-PRGGSP 205
Score = 156 bits (398), Expect = 9e-45
Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 30/221 (13%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
+ + +T LH+AAR ++ + L+ V+ + + QT LH A+ G +VK
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
AN ++ G T LHIA+ EG V +A+
Sbjct: 102 NNANPNLATT----------------------AGHTPLHIAAREGHVETVLALLEKEASQ 139
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
+ + TP+H+AA+ G + ELL ++ A K LH+A ++ D+VKLL
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
L + Y LH+AA ++ +V + LL G +
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSA 238
Score = 152 bits (387), Expect = 4e-43
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 34/223 (15%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
A NG T LH+A +LD+V++L+ G S G T LHIA+ + + +
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
YG ANA + +G T LH+A+ EG +V +A
Sbjct: 234 YGGSANA---------ESV---------------QGVTPLHLAAQEGHAEMVALLLSKQA 269
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
N ++ + TP+HL A+ GH + ++L + T+ Y LH+A+ Y +VK
Sbjct: 270 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASHYGNIKLVK 328
Query: 193 LLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
LL N K Y+ LH AA D+V LLL G +
Sbjct: 329 FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASP 370
Score = 148 bits (376), Expect = 1e-41
Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 31/225 (13%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
+ NG T LH+AA++ +++ R L+ YG S + ++ +G T LH+A+ EG +V
Sbjct: 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
+AN ++ + G T LH+ + EG +
Sbjct: 267 KQANGNLGNK----------------------SGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
T TP+H+A+ G+ +++ L +A + +TK Y+ LH AA D+V LL
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363
Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLN--KKGINVAA 231
L N+ + L +A V +L + V
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLV 408
Score = 125 bits (317), Expect = 4e-33
Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 30/202 (14%)
Query: 43 GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANC 102
G S G T LH+AS G +VK A+ ++++
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV------------------ 45
Query: 103 LLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLAD 162
+ +T LH+A+ G + KY KA + D+TP+H AA GH ++++LL +
Sbjct: 46 ----KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE 101
Query: 163 KFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSRED 216
A+ T + LH+AA + V LL + + LH+AA Y +
Sbjct: 102 N-NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 160
Query: 217 VVKLLLNKKGINVAALGGEDLT 238
V +LLL + + A G LT
Sbjct: 161 VAELLLE-RDAHPNAAGKNGLT 181
Score = 85.2 bits (212), Expect = 8e-19
Identities = 27/139 (19%), Positives = 47/139 (33%), Gaps = 25/139 (17%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
ATT G T LH+A+ ++ +V+ L+ + V+ + G + LH A+ +G +V
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
A+ + +G T L IA G ++
Sbjct: 366 NGASPNEVSS----------------------DGTTPLAIAKRLGYISVTDVLKVVTDET 403
Query: 135 SITDHQD---RTPMHLAAE 150
S D + E
Sbjct: 404 SFVLVSDKHRMSFPETVDE 422
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 143 bits (364), Expect = 2e-41
Identities = 46/221 (20%), Positives = 75/221 (33%), Gaps = 34/221 (15%)
Query: 18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
++ + +H AA +R L+ G +V+I + + LH A G + VK A
Sbjct: 1 MSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANAS 135
+ + T L A G V +GA
Sbjct: 61 QVNGVTA----------------------DWHTPLFNACVSGSWDCVNLLLQHGASVQP- 97
Query: 136 ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
+ +P+H AA GH + L +I + L+LA + VK LL
Sbjct: 98 --ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVKKLL 154
Query: 196 NK-----KGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
+G + LH A + E++ LL+ G + A
Sbjct: 155 ESGADVNQGKGQDSPLHAVARTASEELACLLM-DFGADTQA 194
Score = 134 bits (341), Expect = 4e-38
Identities = 43/223 (19%), Positives = 72/223 (32%), Gaps = 38/223 (17%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
T + + LH A L V+IL+ +G V+ + T L A G V
Sbjct: 31 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 90
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
+GA + + +H A+ G V
Sbjct: 91 HGASVQPE-------------------------SDLASPIHEAARRGHVECVNSLIAYGG 125
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
N TP++LA EN + ++ L + A + + K + LH A + E++
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLES-GADV-NQGKGQDSPLHAVARTASEELAC 183
Query: 193 LLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
LL+ K E + L S + +L L +
Sbjct: 184 LLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLE-REGPP 223
Score = 129 bits (328), Expect = 3e-36
Identities = 41/224 (18%), Positives = 69/224 (30%), Gaps = 41/224 (18%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
T + T L A D V +L+ +G SV ++ + + +H A+ G V
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIA 122
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGA 130
YG + I+ T L++A A VK GA
Sbjct: 123 YGGNIDHKISH------------------------LGTPLYLACENQQRACVKKLLESGA 158
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
N +P+H A + LL D A + E + L S +
Sbjct: 159 DVNQ---GKGQDSPLHAVARTASEELACLLMDF-GADTQAKNAEGKRPVELVPPES--PL 212
Query: 191 VKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGIN 228
+L L + + + + + KL+L +
Sbjct: 213 AQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQ 256
Score = 119 bits (301), Expect = 3e-32
Identities = 32/192 (16%), Positives = 64/192 (33%), Gaps = 32/192 (16%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
+ + +H AAR+ ++ V L+ YG ++D + T L++A A VK GA
Sbjct: 100 DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 159
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
N + LH + E L A+
Sbjct: 160 VNQG-------------------------KGQDSPLHAVARTASEELACLLMDFGADTQA 194
Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
+ + + P+ L + +L ++ + + + KL+L
Sbjct: 195 KNAEGKRPVELVPPESP--LAQLFLER-EGPPSLMQLCRLRIRKCFGIQQHHKITKLVLP 251
Query: 197 KKGIENYNVLHL 208
+ ++ + +LHL
Sbjct: 252 -EDLKQF-LLHL 261
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 139 bits (354), Expect = 3e-40
Identities = 61/224 (27%), Positives = 92/224 (41%), Gaps = 33/224 (14%)
Query: 14 KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY 73
K N + LH AA +D+ +LV G ++D + + +T L A+ VKY
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAK 131
A A D EG T LH+A+ +G +V+Y G
Sbjct: 65 KAGALVDPKDA----------------------EGSTCLHLAAKKGHYEVVQYLLSNGQ- 101
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
+ + D TPM A E H +++LL K + I R E LH AA D+
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVDIA 160
Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
++LL + I + LH+AA +R D V L L+ + +V
Sbjct: 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDV 203
Score = 133 bits (337), Expect = 8e-38
Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 29/222 (13%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
+ + T L AA L+ V+ L+ G VD ++ EG T LH+A+ +G +V+Y
Sbjct: 39 TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS 98
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
D+ G T + A+ LVK ++
Sbjct: 99 NGQ-----------MDVNCQDD----------GGWTPMIWATEYKHVDLVKLLLSKGSDI 137
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
+I D+++ +H AA +G I E+L + + + LH+AA +R D V L
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAARENRYDCVVLF 196
Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVA 230
L K E L A++ S+ + K + A
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS-KALQDSA 237
Score = 111 bits (281), Expect = 1e-29
Identities = 41/190 (21%), Positives = 69/190 (36%), Gaps = 29/190 (15%)
Query: 46 VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLM 105
+++ ++ LH A+ G + A AN
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE--------------------- 42
Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR 165
+ +T L A+ VKY A A D + T +HLAA+ GH +++ L +
Sbjct: 43 -DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ 101
Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
+ + + + A Y D+VKLLL N + E LH AA D+ +
Sbjct: 102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161
Query: 220 LLLNKKGINV 229
+LL ++
Sbjct: 162 ILLA-AKCDL 170
Score = 103 bits (259), Expect = 2e-26
Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 22/158 (13%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
+ L + + G T + A + +D+V++L+ G+ ++I++ E LH A+
Sbjct: 94 QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAF 153
Query: 63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
G + + AK + + G + LHIA+ E
Sbjct: 154 SGCVDIAEILLAAKCDLHAVNI----------------------HGDSPLHIAARENRYD 191
Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
V F ++ ++ + + TP+ A+ N +
Sbjct: 192 CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229
Score = 74.0 bits (183), Expect = 1e-15
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
N + R+P+H AAE GH I +L A+I +++ L AA + + V
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
K L+ + K E LHLAA +VV+ LL+ ++V
Sbjct: 61 KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 139 bits (353), Expect = 7e-40
Identities = 47/237 (19%), Positives = 85/237 (35%), Gaps = 33/237 (13%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
+ Q A T G+TALHLAAR D + L++ +IQ+ G+T LH A
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 61 SAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE 118
+ + + + A + H +G T L +A+
Sbjct: 98 VSADAQGVFQILIRNRA-TDLDARMH----------------------DGTTPLILAARL 134
Query: 119 GDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV 178
E +++ + A+ + D ++ +H AA + +L A+ +
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETP 193
Query: 179 LHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKG-IN 228
L LAA + K+LL + + +A D+V+LL + +
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 116 bits (293), Expect = 4e-31
Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 29/194 (14%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYG-TSVDIQNGEGQTALHIASAEGDEALVKYF- 72
G T LH A + +IL+ T +D + +G T L +A+ E +++
Sbjct: 85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144
Query: 73 -YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
A NA D G++ALH A+A +
Sbjct: 145 NSHADVNA---------VDD---------------LGKSALHWAAAVNNVDAAVVLLKNG 180
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
AN + ++++ TP+ LAA G ++L D F A+ + +A D+V
Sbjct: 181 ANKDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDRLPRDIAQERMHHDIV 239
Query: 192 KLLLNKKG-IENYN 204
+LL + +++
Sbjct: 240 RLLDLEHHHHHHHH 253
Score = 109 bits (274), Expect = 2e-28
Identities = 46/193 (23%), Positives = 74/193 (38%), Gaps = 21/193 (10%)
Query: 46 VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDH---QGIQRDIAAAGTSVLANC 102
V+++ +G T L IAS G + ++ QG +
Sbjct: 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGA--SLHNQTDR----- 55
Query: 103 LLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLAD 162
G+TALH+A+ K A A+A+I D+ RTP+H A + ++L
Sbjct: 56 ----TGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111
Query: 163 KFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSRED 216
+ R + L LAA + E +++ L+ N + LH AA + D
Sbjct: 112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD 171
Query: 217 VVKLLLNKKGINV 229
+LL K G N
Sbjct: 172 AAVVLL-KNGANK 183
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 140 bits (355), Expect = 7e-40
Identities = 48/226 (21%), Positives = 77/226 (34%), Gaps = 38/226 (16%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
L ++ + +H AA +R L+ G +V+I + + LH A G + VK
Sbjct: 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111
Query: 73 --YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--Y 128
+GA+ N D T L A G V +
Sbjct: 112 LKHGAQVNGVTAD------------------------WHTPLFNACVSGSWDCVNLLLQH 147
Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE 188
GA + +P+H AA GH + L +I + L+LA +
Sbjct: 148 GASVQP---ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQR 203
Query: 189 DVVKLLLNK-----KGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
VK LL +G + LH + E++ LL+ G +
Sbjct: 204 ACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLM-DFGADT 248
Score = 133 bits (338), Expect = 2e-37
Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 37/223 (16%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
T + + LH A L V+IL+ +G V+ + T L A G V
Sbjct: 87 IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 146
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
+GA + + +H A+ G V
Sbjct: 147 HGASVQPE-------------------------SDLASPIHEAARRGHVECVNSLIAYGG 181
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
N TP++LA EN + ++ L + A + + K + LH + E++
Sbjct: 182 NIDHKISHLGTPLYLACENQQRACVKKLLES-GADV-NQGKGQDSPLHAVVRTASEELAC 239
Query: 193 LLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
LL+ K E + L S + L ++G ++
Sbjct: 240 LLMDFGADTQAKNAEGKRPVELVPPESPLAQL--FLEREGASL 280
Score = 114 bits (289), Expect = 3e-30
Identities = 36/222 (16%), Positives = 65/222 (29%), Gaps = 38/222 (17%)
Query: 14 KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY 73
K ++G + + + +H A+ G + ++
Sbjct: 27 KQGGMDGSKPAGPRDFPGIRLLSN-------PLMGDAVSDWSPMHEAAIHGHQLSLRNLI 79
Query: 74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
+I + + LH A G + VK A
Sbjct: 80 SQGWAVNIITA----------------------DHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 134 ASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKL 193
+ TP+ A +G + LL AS+ + + + +H AA + V
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASV-QPESDLASPIHEAARRGHVECVNS 175
Query: 194 LL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
L+ + K L+LA + VK LL G +V
Sbjct: 176 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-SGADV 216
Score = 64.8 bits (159), Expect = 3e-12
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 20/127 (15%)
Query: 114 IASAEGDEALVKYF--YGAKANA---SITDHQDRTPMHLAAENGHASIIELLADKFRASI 168
+ S+ G+ + P G LL++ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI----RLLSN----PL 52
Query: 169 FERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLL 222
+++ +H AA++ + ++ L+ N ++ + LH A + VK+LL
Sbjct: 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112
Query: 223 NKKGINV 229
K G V
Sbjct: 113 -KHGAQV 118
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 139 bits (354), Expect = 8e-40
Identities = 46/227 (20%), Positives = 69/227 (30%), Gaps = 27/227 (11%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
G TALHLAA + V L G V + G TALH+A
Sbjct: 40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF---YG 129
+D Q T + S E + +
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDT-----------SHAPAAVDSQPNPENEEEPRDEDWR 148
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN-YNVLHLAAMYSRE 188
+ A ++ TP+H+A + A ++ LL D A + + LHLA
Sbjct: 149 LQLEA--ENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAA 205
Query: 189 DVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
V++LLL + L A + + +LL G
Sbjct: 206 SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA-HGAPE 251
Score = 128 bits (324), Expect = 2e-35
Identities = 55/243 (22%), Positives = 85/243 (34%), Gaps = 48/243 (19%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYG---TSVDIQNGEGQTALHIASAEGDEALV 69
T +GDTALHLA + + L+ + +D+QN GQTALH+A+ G+ + V
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 70 KYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF-- 127
+ Y A A + + G TALH+A
Sbjct: 62 EKLYAAGAGVLVAER----------------------GGHTALHLACRVRAHTCACVLLQ 99
Query: 128 YGAKANASITD-----------HQDRTPMHLAA-ENGHASIIELLADKFRASIFERTKEN 175
+D P + + N D R + +
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW-RLQLEAENYDG 158
Query: 176 YNVLHLAAMYSREDVVKLLL------NKKGIEN-YNVLHLAAMYSREDVVKLLLNKKGIN 228
+ LH+A ++ ++V+LL NK LHLA V++LLL K G +
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL-KAGAD 217
Query: 229 VAA 231
A
Sbjct: 218 PTA 220
Score = 102 bits (257), Expect = 9e-26
Identities = 30/191 (15%), Positives = 59/191 (30%), Gaps = 27/191 (14%)
Query: 9 TAEQLKATTINGDTALHLAARKR-DLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ T + ++ + + D+ ++ +N +G T LH+A D
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE 172
Query: 68 LVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
+V+ GA N G+T LH+A ++++
Sbjct: 173 MVRLLRDAGADLNKPEPTC-----------------------GRTPLHLAVEAQAASVLE 209
Query: 126 YFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY 185
A A+ + + RTP+ A + + LL A E + + +
Sbjct: 210 LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSD 268
Query: 186 SREDVVKLLLN 196
S D
Sbjct: 269 SDSDNRDEGDE 279
Score = 69.5 bits (171), Expect = 6e-14
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 26/112 (23%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
G T LHLA + ++ +L+ G + G+T L A + L + A
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD----EALVKY 126
+ + + ++ D + +Y
Sbjct: 251 EPEDGG----------------------DKLSPCSSSGSDSDSDNRDEGDEY 280
Score = 60.6 bits (148), Expect = 7e-11
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD----EALVK 70
A G T L A + + + R+L +G G+ + + ++ D + +
Sbjct: 220 ARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Query: 71 Y 71
Y
Sbjct: 280 Y 280
Score = 31.0 bits (71), Expect = 0.46
Identities = 3/29 (10%), Positives = 7/29 (24%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYG 43
+ + + D D +Y
Sbjct: 253 EDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 138 bits (350), Expect = 9e-40
Identities = 43/220 (19%), Positives = 80/220 (36%), Gaps = 30/220 (13%)
Query: 20 GDTALHLAARKRDLDMVR-ILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
+ LH A + + V+ +L + + ++ +G+ LH + + + + N
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASI 136
++ D+ G T HIA + G+ +VK K + +
Sbjct: 62 VNLDDYPD-------------------DSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102
Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL- 195
+Q T +HLA + + L + AS+ + K N LH AA +++LL
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCG 161
Query: 196 ------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
N + + + L A D LL+ K G
Sbjct: 162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201
Score = 135 bits (342), Expect = 1e-38
Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 40/236 (16%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNG---EGQTAL 57
+ ELL ++ + L +G LH + + ++ L+ +V++ + G T
Sbjct: 18 VQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPF 76
Query: 58 HIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIA 115
HIA + G+ +VK K + + + +G T LH+A
Sbjct: 77 HIACSVGNLEVVKSLYDRPLKPDLNKITN----------------------QGVTCLHLA 114
Query: 116 SAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN 175
+ + ++ A+ I D ++ P+H AA G +IELL ++++ + K+
Sbjct: 115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG 174
Query: 176 YNVLHLAAMYSREDVVKLLLNKKGIENYNV--------LHLAAMYSREDVVKLLLN 223
+ L A D LL+ K G Y++ +A E V K LN
Sbjct: 175 WTPLFHALAEGHGDAAVLLVEKYGA-EYDLVDNKGAKAEDVAL---NEQVKKFFLN 226
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 139 bits (354), Expect = 9e-40
Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 46/233 (19%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
G T LH A + D+V +L+ +G ++ G T +A+ G L+K F GA
Sbjct: 38 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANA 134
N G TA A+ G +K+ GA N
Sbjct: 98 VNECDFY------------------------GFTAFMEAAVYGKVKALKFLYKRGANVNL 133
Query: 135 SITDHQD--------RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS 186
+D T + AAE GH ++++L D+ A + N L A + S
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193
Query: 187 R----EDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
E + LLL N +G L LA +V+ LL ++ I +
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246
Score = 136 bits (345), Expect = 2e-38
Identities = 51/229 (22%), Positives = 83/229 (36%), Gaps = 30/229 (13%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
NG T LAA + ++++ + G V+ + G TA A+ G +K+ Y
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF---YGAK 131
AN ++ ++ G TAL A+ +G ++K GA
Sbjct: 127 RGANVNLRRKTKEDQERLRK------------GGATALMDAAEKGHVEVLKILLDEMGAD 174
Query: 132 ANASITDHQDRTPMHLAAENGHAS----IIELLADKFRASIFERTKENYNVLHLAAMYSR 187
NA D+ R + A + S I LL D A + R + L LA
Sbjct: 175 VNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKH 231
Query: 188 EDVVKLLL-------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+V+ LL N + L LA + + +LL +G +
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK-RGAST 279
Score = 131 bits (332), Expect = 2e-36
Identities = 53/236 (22%), Positives = 84/236 (35%), Gaps = 48/236 (20%)
Query: 17 TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYF--Y 73
+ + L A + D+D+V+ L++ G +V+ Q E G T LH A E +V+ +
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
GA + G T +A+ G L+K F A+
Sbjct: 62 GADPVLRKKN------------------------GATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 134 ASITDHQDRTPMHLAAENGHASIIELL---------ADKFRASIFERTKENYNVLHLAAM 184
+ D T AA G ++ L K + K L AA
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 185 YSREDVVKLLLNKKGI-------ENYNVLHLAAMYSR----EDVVKLLLNKKGINV 229
+V+K+LL++ G N L A + S E + LLL+ G +V
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADV 212
Score = 92.1 bits (230), Expect = 6e-22
Identities = 41/160 (25%), Positives = 60/160 (37%), Gaps = 36/160 (22%)
Query: 11 EQLKATTINGDTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGD---- 65
E + G TAL AA K +++++IL+D G V+ + G+ AL A D
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198
Query: 66 EALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL 123
EA+ +GA N R G+T L +A + L
Sbjct: 199 EAITHLLLDHGADVNV---------RGE---------------RGKTPLILAVEKKHLGL 234
Query: 124 VKYF---YGAKANASITDHQDRTPMHLAAENGHASIIELL 160
V+ + N TD +T + LA E I ELL
Sbjct: 235 VQRLLEQEHIEIND--TDSDGKTALLLAVELKLKKIAELL 272
Score = 71.0 bits (175), Expect = 2e-14
Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 34/140 (24%)
Query: 4 LLSTQTAEQLKATTINGDTALHLAARK----RDLDMVRILVDYGTSVDIQNGEGQTALHI 59
LL A+ + A G AL A + +L+D+G V+++ G+T L +
Sbjct: 167 LLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225
Query: 60 ASAEGDEALVKYF---YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIAS 116
A + LV+ + N TD +G+TAL +A
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEIND--TDS----------------------DGKTALLLAV 261
Query: 117 AEGDEALVKYF--YGAKANA 134
+ + + GA +
Sbjct: 262 ELKLKKIAELLCKRGASTDC 281
Score = 39.4 bits (93), Expect = 7e-04
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 4 LLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
LL + E + T +G TAL LA + + +L G S D +
Sbjct: 238 LLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 137 bits (348), Expect = 1e-39
Identities = 36/235 (15%), Positives = 69/235 (29%), Gaps = 34/235 (14%)
Query: 10 AEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALV 69
++ G + A + L + T +++G L+
Sbjct: 2 SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61
Query: 70 KYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYG 129
Y A+ LH A+ G+ + ++
Sbjct: 62 PSNYVAEQA---------------------------ESIDNPLHEAAKRGNLSWLRECLD 94
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRED 189
+ + D T ++ A GH I+E+L + + ++ K LH AA D
Sbjct: 95 NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYAD 154
Query: 190 VVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLT 238
+V+LLL + + IE +A + ++K ED
Sbjct: 155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAEDYL 208
Score = 92.3 bits (230), Expect = 2e-22
Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 23/140 (16%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGDEALVKYFY 73
G TAL+ A D+V +L ++ QN G TALH A+ +G +V+
Sbjct: 101 GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Query: 74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
A + + E + A +A+ +L+K G A
Sbjct: 161 AKGARTDLRNI----------------------EKKLAFDMATNAACASLLKKKQGTDAV 198
Query: 134 ASITDHQDRTPMHLAAENGH 153
++++ +D + H
Sbjct: 199 RTLSNAEDYLDDEDSDLEHH 218
Score = 74.2 bits (183), Expect = 6e-16
Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 22/117 (18%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
E+L TQ +L GDTALH AA K D+V++L+ G D++N E + A +A+
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182
Query: 63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
+L+K G A ++++ E + E
Sbjct: 183 AACASLLKKKQGTDAVRTLSNA----------------------EDYLDDEDSDLEH 217
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 136 bits (345), Expect = 6e-39
Identities = 47/219 (21%), Positives = 80/219 (36%), Gaps = 30/219 (13%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
T LHLA +VR+LV G S + GQTA H+A ++
Sbjct: 41 IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD 100
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
A + R+ +G TALH+A + V+ A
Sbjct: 101 SAAPGTLDLEA-----RNY---------------DGLTALHVAVNTECQETVQLLLERGA 140
Query: 133 NASITDHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
+ D + R+P+ A EN S+++LL A++ + + LH A+ +V
Sbjct: 141 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-GANVNAQMYSGSSALHSASGRGLLPLV 199
Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
+ L+ + K N L +A D+++ +
Sbjct: 200 RTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238
Score = 131 bits (333), Expect = 4e-37
Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 39/230 (16%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDY----GTSVDIQNGEGQTALHIASAEGDEALVK 70
+GDT LH+A + +L V LV+ G +DI N QT LH+A ++V+
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63
Query: 71 YFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--Y 128
A A+ D GQTA H+A ++
Sbjct: 64 LLVTAGASPMALDR----------------------HGQTAAHLACEHRSPTCLRALLDS 101
Query: 129 GAKANASI--TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN-YNVLHLAAMY 185
A + ++ T +H+A ++LL ++ A I ++ + L A
Sbjct: 102 AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLIHAVEN 160
Query: 186 SREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ +V+LLL N + + LH A+ +V+ L+ + G +
Sbjct: 161 NSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV-RSGADS 209
Score = 105 bits (266), Expect = 2e-27
Identities = 45/198 (22%), Positives = 74/198 (37%), Gaps = 37/198 (18%)
Query: 46 VDIQNGEGQTALHIASAEGD----EALVKYFYGAKANASITDHQGIQRDIAAAGTSVLAN 101
+ +G T LHIA +G+ LV F I ++
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----------------- 44
Query: 102 CLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLA 161
QT LH+A ++V+ A A+ D +T HLA E+ + + L
Sbjct: 45 -----LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 99
Query: 162 DK---FRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIEN-YNVLHLAAM 211
D + R + LH+A ++ V+LLL + I++ + L A
Sbjct: 100 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159
Query: 212 YSREDVVKLLLNKKGINV 229
+ +V+LLL + G NV
Sbjct: 160 NNSLSMVQLLL-QHGANV 176
Score = 73.6 bits (182), Expect = 2e-15
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
+G + L A L MV++L+ +G +V+ Q G +ALH AS G LV+ + A+
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD 208
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
+S+ + T L +A + +++ A+
Sbjct: 209 SSLKNC----------------------HNDTPLMVARSRRVIDILRGKATRPAS 241
Score = 63.2 bits (155), Expect = 6e-12
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
A +G +ALH A+ + L +VR LV G ++N T L +A + +++
Sbjct: 178 AQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT 237
Query: 75 AKAN 78
A+
Sbjct: 238 RPAS 241
Score = 32.8 bits (76), Expect = 0.10
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 194 LLNKKGIENYNVLHLAAMYSREDVVKLLLN---KKGINV 229
+ + + LH+A + V L+N + G +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL 39
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 135 bits (343), Expect = 8e-39
Identities = 53/244 (21%), Positives = 87/244 (35%), Gaps = 36/244 (14%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
+ Q A T G+TALHLAAR D + L++ +IQ+ G+T LH A
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 61 SAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE 118
+ + + + A D+ A M +G T L +A+
Sbjct: 66 VSADAQGVFQILIRNRAT-------------DLDAR----------MHDGTTPLILAARL 102
Query: 119 GDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY 176
E +++ A NA D ++ +H AA + +L A+ +
Sbjct: 103 AVEGMLEDLINSHADVNA--VDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREE 159
Query: 177 NVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVA 230
L LAA + K+LL + + +A D+V+LL +
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219
Query: 231 ALGG 234
L G
Sbjct: 220 QLHG 223
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 135 bits (342), Expect = 5e-38
Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 26/212 (12%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
+ LH AA D +V+IL+ G + +G TAL+ A G+ VK F
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
G +T+ + A D ++V YF + +
Sbjct: 121 LMFYGKTG---------------------WKTSFYHAVMLNDVSIVSYFLSEIPS-TFDL 158
Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY-NVLHLAAMYSREDVVKLLLNK 197
+ +H+ +NGH ++ LL D S + + LA ++++ L K
Sbjct: 159 AILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF-K 216
Query: 198 KGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
I Y+ + ++ K+++ K +
Sbjct: 217 YDINIYSANLENVLLDDAEIAKMIIE-KHVEY 247
Score = 128 bits (325), Expect = 2e-35
Identities = 40/224 (17%), Positives = 76/224 (33%), Gaps = 37/224 (16%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
++G +A + A ++ +V L++ G ++ + LH A+ D +VK
Sbjct: 26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLF 83
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
+ + S D +G TAL+ A G+ VK F +
Sbjct: 84 SGLDDSQFDD----------------------KGNTALYYAVDSGNMQTVKLFVKKNWRL 121
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
+T + A SI+ + S + +H+ D++
Sbjct: 122 MFY-GKTGWKTSFYHAVMLNDVSIVSYFLSE-IPST-FDLAILLSCIHITIKNGHVDMMI 178
Query: 193 LLL------NKKGIENY-NVLHLAAMYSREDVVKLLLNKKGINV 229
LLL N + + LA ++++ L K IN+
Sbjct: 179 LLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF-KYDINI 221
Score = 114 bits (287), Expect = 5e-30
Identities = 31/210 (14%), Positives = 67/210 (31%), Gaps = 33/210 (15%)
Query: 26 LAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQ 85
++ + + G +A + A A+ + LV A A ++ +
Sbjct: 5 SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-- 61
Query: 86 GIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPM 145
+ LH A+ D +VK + + S D + T +
Sbjct: 62 ----------------------NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL 99
Query: 146 HLAAENGHASIIELLADKFRASIFERTKENYN-VLHLAAMYSREDVVKLLL-----NKKG 199
+ A ++G+ ++L K + K + + A M + +V L
Sbjct: 100 YYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL 158
Query: 200 IENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ +H+ D++ LLL+ +
Sbjct: 159 AILLSCIHITIKNGHVDMMILLLD-YMTST 187
Score = 106 bits (266), Expect = 6e-27
Identities = 27/226 (11%), Positives = 63/226 (27%), Gaps = 43/226 (19%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEG-QTALHIASAEGDEALVKYF- 72
G+TAL+ A ++ V++ V + G +T+ + A D ++V YF
Sbjct: 90 QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149
Query: 73 -YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
+ + + +HI G ++
Sbjct: 150 SEIP-STFDLAI------------------------LLSCIHITIKNGHVDMMILLLDYM 184
Query: 132 ANASITDHQDRTP-MHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
+ + + P + LA +N +++ L +I Y+ + ++
Sbjct: 185 TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINI-------YSANLENVLLDDAEI 236
Query: 191 VKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVA 230
K+++ + L +N
Sbjct: 237 AKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCV 282
Score = 80.3 bits (199), Expect = 1e-17
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 13/128 (10%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G I + +K F + + D + + A + + ++ L + A
Sbjct: 1 GMDLSRINT--WKSKQLKSF-LSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA-GAL 56
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
EN LH AA +VK+LL ++ + L+ A VKL
Sbjct: 57 K--NLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF 114
Query: 222 LNKKGINV 229
+ KK +
Sbjct: 115 V-KKNWRL 121
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 134 bits (339), Expect = 6e-38
Identities = 55/221 (24%), Positives = 83/221 (37%), Gaps = 35/221 (15%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
+ A + + R LV+ G V + E T LH A+ LVKY+ GA
Sbjct: 8 YSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
+ D T LH A+ +G ++V A+ S+
Sbjct: 68 VDQLGGDL-----------------------NSTPLHWATRQGHLSMVVQLMKYGADPSL 104
Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS-REDVVKLLL 195
D + + +HLAA+ GH SI+ L K + + L AA + D +LLL
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 196 ----NKKGIENYN---VLHLAAMYSREDVVKLLLNKKGINV 229
+ + Y+ LH A + V+ LLL G NV
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANV 203
Score = 132 bits (334), Expect = 2e-37
Identities = 49/220 (22%), Positives = 80/220 (36%), Gaps = 32/220 (14%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYFY 73
T LH AA +D+V+ + G VD G+ T LH A+ +G ++V
Sbjct: 37 QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM 96
Query: 74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
A+ S+ D EG + +H+A+ G ++V Y +
Sbjct: 97 KYGADPSLIDG----------------------EGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 134 ASITDHQDRTPMHLAAENGH-ASIIELLADKFRASIFERTKEN-YNVLHLAAMYSREDVV 191
+ D TP+ AA H LL S+ K + LH A + V+
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYHKNTALHWAVLAGNTTVI 193
Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
LLL + + I+ + L LA ++ L +
Sbjct: 194 SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233
Score = 120 bits (303), Expect = 8e-33
Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 25/188 (13%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
T LH A R+ L MV L+ YG + +GEG + +H+A+ G ++V Y +
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD 134
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA-LVKYFYGAKANASIT 137
+ D G T L A+ + + ++
Sbjct: 135 VDMMDQ----------------------NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172
Query: 138 DHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
D T +H A G+ ++I LL + A++ + + + L LA ++ L
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKNVWMINHLQE 231
Query: 197 KKGIENYN 204
+ + Y+
Sbjct: 232 ARQAKGYD 239
Score = 107 bits (269), Expect = 8e-28
Identities = 40/193 (20%), Positives = 63/193 (32%), Gaps = 34/193 (17%)
Query: 46 VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLM 105
+ + + A+ G + A + D
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK--------------------- 40
Query: 106 GEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADK 163
E T LH A+ LVKY+ GA + D + TP+H A GH S++ L
Sbjct: 41 -ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL-NSTPLHWATRQGHLSMVVQLMKY 98
Query: 164 FRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYS-RED 216
A E + +HLAA + +V L+ + L AA + D
Sbjct: 99 -GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 217 VVKLLLNKKGINV 229
+LLL ++V
Sbjct: 158 PTRLLL-TFNVSV 169
Score = 71.7 bits (177), Expect = 7e-15
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
+ + D + A + G L + + + KEN +LH AA+ +R D+VK
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVK 59
Query: 193 LLL------NKKGIE-NYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ ++ G + N LH A +V L+ G +
Sbjct: 60 YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK-YGADP 102
Score = 67.1 bits (165), Expect = 3e-13
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 14 KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFY 73
+ +TALH A + ++ +L++ G +VD QN +G++AL +A + ++ +
Sbjct: 171 LGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230
Query: 74 GAKAN 78
A+
Sbjct: 231 EARQA 235
Score = 36.3 bits (85), Expect = 0.008
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
A I G++AL LA +++++ M+ L + + N
Sbjct: 205 AQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 135 bits (343), Expect = 2e-37
Identities = 34/237 (14%), Positives = 72/237 (30%), Gaps = 38/237 (16%)
Query: 15 ATTINGDTALHLAAR--KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
G TALH L+M++ILV G S ++ +T L A + +
Sbjct: 133 VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLM 192
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
+ + + + +G + LH A E + F
Sbjct: 193 --------------MDTVPSKSSLRLDYAN---KQGNSHLHWAILINWEDVAMRFVEMGI 235
Query: 133 NASITDHQDRTPMHLAAENGHASIIELL------------ADKFRASIFERTKENYNVLH 180
+ ++ D++ P++L+ + + L ++ + +
Sbjct: 236 DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVP 295
Query: 181 LAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
AA S+++V++LL + + V ++ L V
Sbjct: 296 AAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA-PSAPVRT 351
Score = 131 bits (331), Expect = 1e-35
Identities = 43/227 (18%), Positives = 73/227 (32%), Gaps = 49/227 (21%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
+ +H+AARK D VR L++ G S IQN G TALH+A G KY
Sbjct: 15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS 74
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
S+ GQ +H+A LV
Sbjct: 75 VGEVHSLWH------------------------GQKPIHLAVMANKTDLVVALVEGAKE- 109
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMY--SREDVVK 192
+ + P L E + E+ + + + LH +++K
Sbjct: 110 -----RGQMPESLLNECDEREVNEIGSH-------VKHCKGQTALHWCVGLGPEYLEMIK 157
Query: 193 LLL------NKKGIENYNVLHLAAMYSREDVVKLLLN----KKGINV 229
+L+ K + L A + + + L+++ K + +
Sbjct: 158 ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL 204
Score = 119 bits (300), Expect = 3e-31
Identities = 27/219 (12%), Positives = 58/219 (26%), Gaps = 47/219 (21%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTS-----VDIQNGEGQTALHIASAEGDEALV 69
A +T L A R+ + + +++D S +D N +G + LH A E +
Sbjct: 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227
Query: 70 KYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF-- 127
F + ++ D+ E L+++ L K
Sbjct: 228 MRFVEMGIDVNMEDN----------------------EHTVPLYLSVRAAMVLLTKELLQ 265
Query: 128 YGAK-----------ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENY 176
+ AA+ +++LL +K +
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK-LDEVVRSLNTGA 324
Query: 177 NVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLA 209
+ V ++ L + ++
Sbjct: 325 GGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 102 bits (257), Expect = 4e-25
Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 34/186 (18%)
Query: 46 VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLM 105
+ E +H+A+ +G V+ + +I +
Sbjct: 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR--------------------- 51
Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR 165
G TALH+A G KY S+ + P+HLA ++ L
Sbjct: 52 -FGCTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVAL----- 103
Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMY--SREDVVKLLLN 223
+ + L +V ++ + K + LH +++K+L+
Sbjct: 104 --VEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ 161
Query: 224 KKGINV 229
G +
Sbjct: 162 -LGASP 166
Score = 76.4 bits (189), Expect = 6e-16
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRED 189
K N +D ++ +H+AA G + L + S + + LHLA + D
Sbjct: 9 PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVD 67
Query: 190 VVKLLL----NKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
K L +HLA M ++ D+V L+
Sbjct: 68 TAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGA 107
Score = 52.9 bits (128), Expect = 4e-08
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 160 LADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYS 213
+ D + + + EN +H+AA + D V+ L+ + LHLA +
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64
Query: 214 REDVVKLLLNKKGINVAALGGE 235
D K L + G + G+
Sbjct: 65 CVDTAKYLAS-VGEVHSLWHGQ 85
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 131 bits (331), Expect = 5e-37
Identities = 51/228 (22%), Positives = 84/228 (36%), Gaps = 40/228 (17%)
Query: 14 KATTINGDTALHLAARK----RDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALV 69
+ T +GD+ LHLA ++++R + ++ QN QT LH+A +
Sbjct: 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61
Query: 70 KYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF-- 127
+ GA + + D G T LH+A +G A V
Sbjct: 62 EALLGAGCDPELRDF----------------------RGNTPLHLACEQGCLASVGVLTQ 99
Query: 128 YGAKANAS----ITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN-YNVLHLA 182
+ T++ T +HLA+ +G+ I+ELL A + + N LHLA
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLA 158
Query: 183 AMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
D+V LLL N+ + Y+ L + + L
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206
Score = 121 bits (307), Expect = 2e-33
Identities = 40/225 (17%), Positives = 75/225 (33%), Gaps = 25/225 (11%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
+ + A L T LHLA ++ L+ G ++++ G T LH+A
Sbjct: 27 VIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA 85
Query: 61 SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
+G A V + + + A G T LH+AS G
Sbjct: 86 CEQGCLASVGVLTQSCTT------PHLHSILKATNY----------NGHTCLHLASIHGY 129
Query: 121 EALVKYFYGAKANASITDHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVL 179
+V+ A+ + + + RT +HLA + + ++ LL A + T + Y+
Sbjct: 130 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPY 188
Query: 180 HLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVV 218
L + + L + E+ + +
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233
Score = 88.8 bits (221), Expect = 5e-21
Identities = 30/152 (19%), Positives = 47/152 (30%), Gaps = 23/152 (15%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNG-EGQTALHIASAEGDE 66
LKAT NG T LHLA+ L +V +LV G V+ Q G+TALH+A +
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP 164
Query: 67 ALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY 126
LV A+ + + +G + + + +
Sbjct: 165 DLVSLLLKCGADVNRVTY----------------------QGYSPYQLTWGRPSTRIQQQ 202
Query: 127 FYGAKANASITDHQDRTPMHLAAENGHASIIE 158
+ E+ E
Sbjct: 203 LGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 128 bits (324), Expect = 3e-36
Identities = 42/219 (19%), Positives = 73/219 (33%), Gaps = 36/219 (16%)
Query: 17 TINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAK 76
T L A ++ + IL D VD + EG T L+IA D + K
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANA 134
A+ ++ + + A A+G ++ Y + +
Sbjct: 63 ADINLQNS----------------------ISDSPYLYAGAQGRTEILAYMLKHAT-PDL 99
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSR-----ED 189
+ + + AAE GH ++LL + R I + Y L A +D
Sbjct: 100 NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159
Query: 190 VVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLL 222
+VKLL+ + K + A ++ K+L
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Score = 105 bits (265), Expect = 1e-27
Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 35/194 (18%)
Query: 48 IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGE 107
++ E L A+ + + + D E
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT----------------------E 38
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G T L+IA D + K A+ ++ + +P A G I+ +
Sbjct: 39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL-------NKKGIENYNVLHLAAMYSR-----E 215
+ + + N L AA D VKLLL + + Y L A +
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 216 DVVKLLLNKKGINV 229
D+VKLL+ G +
Sbjct: 159 DIVKLLME-NGADQ 171
Score = 104 bits (261), Expect = 5e-27
Identities = 30/189 (15%), Positives = 64/189 (33%), Gaps = 32/189 (16%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
G+T L++A D+++ + L+D G +++QN + A A+G ++ Y
Sbjct: 34 EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLK 93
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGA-K 131
+ + + + G AL A+ +G VK +
Sbjct: 94 HAT-PDLNKHNR----------------------YGGNALIPAAEKGHIDNVKLLLEDGR 130
Query: 132 ANASITDHQDRTPMHLAA-----ENGHASIIELLADKFRASIFERTKENYNVLHLAAMYS 186
+ + T + A + I++LL + A + + A
Sbjct: 131 EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKDNSGRTAMDYANQKG 189
Query: 187 REDVVKLLL 195
++ K+L
Sbjct: 190 YTEISKILA 198
Score = 66.7 bits (164), Expect = 2e-13
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 28/130 (21%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTS-VDIQNGEGQTALHIA- 60
+ L G AL AA K +D V++L++ G +D QN G TAL A
Sbjct: 89 AYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV 148
Query: 61 ----SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIAS 116
+ + +VK A+ SI D G+TA+ A+
Sbjct: 149 GLREGNQLYQDIVKLLMENGADQSIKD----------------------NSGRTAMDYAN 186
Query: 117 AEGDEALVKY 126
+G + K
Sbjct: 187 QKGYTEISKI 196
Score = 31.3 bits (72), Expect = 0.30
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDY 42
+G TA+ A +K ++ +IL Y
Sbjct: 173 IKDNSGRTAMDYANQKGYTEISKILAQY 200
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 124 bits (315), Expect = 2e-35
Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 23/179 (12%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
++H A + ++ + ++ ++ + EG T L A+A G A+V++ A+
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
+ ++AL +A ++G +VK + + D
Sbjct: 62 PQLLGK----------------------GRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99
Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
TP+ A H +++L + A T YN + LA V +++ +
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157
Score = 112 bits (282), Expect = 1e-30
Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 30/187 (16%)
Query: 51 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQT 110
G ++H +A+G+ + + + TD EG T
Sbjct: 1 GANSLSVHQLAAQGEMLYLATRIEQENVINHTDE----------------------EGFT 38
Query: 111 ALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFE 170
L A+A G A+V++ A+ + + + LA G+ I+++L D + E
Sbjct: 39 PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNE 97
Query: 171 RTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
L A + VK+LL + YN + LA V +++ +
Sbjct: 98 YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES- 156
Query: 225 KGINVAA 231
+ +
Sbjct: 157 HLLKLLQ 163
Score = 105 bits (266), Expect = 4e-28
Identities = 31/160 (19%), Positives = 53/160 (33%), Gaps = 23/160 (14%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
T G T L AA + +V L+ G + ++AL +A ++G +VK
Sbjct: 31 HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLD 90
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
+ + D G T L A VK + A+
Sbjct: 91 CGVDVNEYDW----------------------NGGTPLLYAVHGNHVKCVKMLLESGADP 128
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKE 174
+I M LA G+ S+ +++ + + KE
Sbjct: 129 TIETDSGYNSMDLAVALGYRSVQQVIESH-LLKLLQNIKE 167
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 129 bits (326), Expect = 4e-35
Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 52/244 (21%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
A+ T LHLAA + +V++L+ +G V ++ G LH A + G + +
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLK 112
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
A + D T LH A+++ + A+
Sbjct: 113 HGACVNAMDL----------------------WQFTPLHEAASKNRVEVCSLLLSHGADP 150
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKF--------------------RASIFERTKE 174
++ + ++ + +A + F++ +
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210
Query: 175 NYNVLHLAAM---YSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
+ LH A R+ V +LLL N+K + LH+AA + DV+++L K
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH-KH 269
Query: 226 GINV 229
G +
Sbjct: 270 GAKM 273
Score = 126 bits (320), Expect = 3e-34
Identities = 39/220 (17%), Positives = 66/220 (30%), Gaps = 34/220 (15%)
Query: 15 ATTINGDTALHLAARKRDLD-MVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF- 72
T L AAR + + ++ +L + +G T LH+A+ +V+
Sbjct: 19 LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78
Query: 73 -YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
+GA +A G LH A + G + +
Sbjct: 79 QHGADVHAKDKG------------------------GLVPLHNACSYGHYEVTELLLKHG 114
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
A + D TP+H AA + LL A + + +A + +
Sbjct: 115 ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERL 173
Query: 192 KLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
+ L AA + VK L + IN
Sbjct: 174 TYEFKG------HSLLQAAREADLAKVKKTLALEIINFKQ 207
Score = 123 bits (312), Expect = 4e-33
Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 45/226 (19%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
A + T LH AA K +++ +L+ +G + N G++A+ +A + Y +
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF- 177
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
+G + L A+ E D A VK +
Sbjct: 178 --------------------------------KGHSLLQ-AAREADLAKVKKTLALEIIN 204
Query: 135 SITDHQDRTPMHLAAENGHAS---IIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
T +H A + H + ELL K A++ E+ K+ LH+AA + DV+
Sbjct: 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVM 263
Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
++L N LH AA+ +LLL+ G + +
Sbjct: 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS-YGSDPSI 308
Score = 113 bits (285), Expect = 3e-29
Identities = 42/223 (18%), Positives = 66/223 (29%), Gaps = 43/223 (19%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD-EALVKYFYGAKA 77
G +AL LA D + + L A+ G+ E L+
Sbjct: 3 FGKSALDLA-------------DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV 49
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
N +D G T LH+A+ +V+ A+
Sbjct: 50 NCHASD----------------------GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 138 DHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL-- 195
D P+H A GH + ELL A + + LH AA +R +V LLL
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 196 ----NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGG 234
+ + +A + + + AA
Sbjct: 147 GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREA 189
Score = 95.3 bits (238), Expect = 1e-22
Identities = 40/201 (19%), Positives = 67/201 (33%), Gaps = 38/201 (18%)
Query: 18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEAL---VKYFYG 74
G + L AAR+ DL V+ + Q +TALH A A +
Sbjct: 177 FKGHSLLQ-AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
AN + + + T LH+A+ +++ +GAK
Sbjct: 236 KGANVNEKNK----------------------DFMTPLHVAAERAHNDVMEVLHKHGAKM 273
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
NA D +T +H AA GH LL + + + + + E V +
Sbjct: 274 NA--LDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAAQMGN----EAVQQ 326
Query: 193 LLL---NKKGIENYNVLHLAA 210
+L + + L A+
Sbjct: 327 ILSESTPMRTSDVDYRLLEAS 347
Score = 80.6 bits (200), Expect = 2e-17
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 29/138 (21%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
+ T LH+AA + D++ +L +G ++ + GQTALH A+ G +
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
++ SI Q G TA + + + L +
Sbjct: 302 YGSDPSIISLQ----------------------GFTAAQMGNEAVQQILSE---STPMRT 336
Query: 135 SITDHQDRTPMHLAAENG 152
S D + A++ G
Sbjct: 337 SDVD----YRLLEASKAG 350
Score = 40.2 bits (95), Expect = 6e-04
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD 65
++ G TA + + V+ ++ T + + + + L AS GD
Sbjct: 308 IISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDYR--LLEASKAGD 351
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 127 bits (322), Expect = 2e-34
Identities = 49/251 (19%), Positives = 84/251 (33%), Gaps = 53/251 (21%)
Query: 3 ELLSTQTAEQLK-------ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQT 55
E L A++ A + +T L LA R +V L+ G I N ++
Sbjct: 142 EDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201
Query: 56 ALHIASAEGDEALVKY-----FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQT 110
ALH A+A D ++ Y G T
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEEL------------------------DRNGMT 237
Query: 111 ALHIASAEGDE---ALVKYF--YGAKANASITDHQD------RTPMHLAAENGHASIIEL 159
AL I + A K GAK + +D RT +H AA+ + I++
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297
Query: 160 LADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYS 213
L + ++ ++ ++ + LAA R +VV L+ ++ LA +
Sbjct: 298 LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN 357
Query: 214 REDVVKLLLNK 224
++V +
Sbjct: 358 HHNIVDIFDRC 368
Score = 119 bits (301), Expect = 3e-31
Identities = 37/238 (15%), Positives = 57/238 (23%), Gaps = 46/238 (19%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
+ + E LH A G A+ + N
Sbjct: 60 YSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVN 118
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV--------KYFYGA 130
H +T LH ++ K A
Sbjct: 119 IIDPRH-----------------------NRTVLHWIASNSSAEKSEDLIVHEAKECIAA 155
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
A+ + D + TP+ LA ++ L A K + LH AA +
Sbjct: 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGM 214
Query: 191 VKLLL---------NKKGIENYNVLHLAAMYSRED---VVKLLLNKKGINVAALGGED 236
+ +L + L + A D KLL+ KG V G
Sbjct: 215 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE-KGAKVDYDGAAR 271
Score = 110 bits (276), Expect = 8e-28
Identities = 34/226 (15%), Positives = 61/226 (26%), Gaps = 48/226 (21%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
+ +L A+ + R + + G++ L + +
Sbjct: 36 SSQHSLLEASYDGYIKRQRNELQHY---------SLYPNPQGYGNGNDFLGDFNHTNLQI 86
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
+ + E LH A G A+ + N
Sbjct: 87 PTEPEP----------------------ESPIKLHTE-AAGSYAITEPITRESVNIIDPR 123
Query: 139 HQDRTPMHLAAENGHASIIELLADKFR-------ASIFERTKENYNVLHLAAMYSREDVV 191
H +RT +H A N A E L A + + L LA + R +V
Sbjct: 124 H-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV 182
Query: 192 KLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKK--GINV 229
L+ + LH AA ++ +LN ++
Sbjct: 183 AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 228
Score = 70.0 bits (172), Expect = 9e-14
Identities = 26/138 (18%), Positives = 42/138 (30%), Gaps = 16/138 (11%)
Query: 101 NCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
N + Q +L AS +G K + H P NG+ + +
Sbjct: 30 NHQSITSSQHSLLEASYDGY---------IKRQRNELQHYSLYPNPQGYGNGNDFLGDFN 80
Query: 161 ADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK-----KGIENYNVLHLAAMYSRE 215
E E+ LH A S + + + + N VLH A S
Sbjct: 81 HTN-LQIPTEPEPESPIKLHTEAAGSYA-ITEPITRESVNIIDPRHNRTVLHWIASNSSA 138
Query: 216 DVVKLLLNKKGINVAALG 233
+ + L+ + A G
Sbjct: 139 EKSEDLIVHEAKECIAAG 156
Score = 35.7 bits (83), Expect = 0.015
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVD 47
A TA LA ++V I +
Sbjct: 341 AVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 121 bits (307), Expect = 4e-34
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 23/190 (12%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ + + L AAR D VRIL+ G V+ ++ G T LH+A+ G
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61
Query: 68 LVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF 127
+V+ A+ + DH G T L +A+ G +V+
Sbjct: 62 IVEVLLKNGADVNAVDH----------------------AGMTPLRLAALFGHLEIVEVL 99
Query: 128 YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSR 187
A+ + D + TP+HLAA GH I+E+L A + + K ++
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGN 158
Query: 188 EDVVKLLLNK 197
ED+ ++L
Sbjct: 159 EDLAEILQKL 168
Score = 95.5 bits (239), Expect = 4e-24
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
L A+ G + V+ A+ + D TP+HLAA NGH I+E+L A
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-GAD 72
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
+ L LAA++ ++V++LL N +E + LHLAAM+ ++V++L
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Query: 222 LNKKGINV 229
L K G +V
Sbjct: 133 L-KNGADV 139
Score = 30.0 bits (69), Expect = 0.60
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 194 LLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ G + L AA R+D V++L+ G +V
Sbjct: 6 HHHHHGSDLGKKLLEAARAGRDDEVRILMA-NGADV 40
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 118 bits (299), Expect = 7e-33
Identities = 37/179 (20%), Positives = 64/179 (35%), Gaps = 24/179 (13%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGT-SVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
++H A + +LD ++ + G V+ + G T L ASA G+ V++ A+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
I E ++AL +AS G +V + +I D
Sbjct: 62 PHILAK----------------------ERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
TP+ A H +E L + A + Y + LA V +++ N
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157
Score = 104 bits (262), Expect = 1e-27
Identities = 31/174 (17%), Positives = 59/174 (33%), Gaps = 26/174 (14%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
+ + + G T L A+ +++ VR L+++G I E ++AL +AS
Sbjct: 19 KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAST 78
Query: 63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
G +V + +I D G T L A
Sbjct: 79 GGYTDIVGLLLERDVDINIYDW----------------------NGGTPLLYAVRGNHVK 116
Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL----ADKFRASIFERT 172
V+ A+ + TPM LA G+ + +++ F++++
Sbjct: 117 CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170
Score = 81.7 bits (203), Expect = 5e-19
Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 22/130 (16%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
++AL LA+ D+V +L++ ++I + G T L A V+
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
A+ + G T + +A A G + +
Sbjct: 124 RGADLTTEAD----------------------SGYTPMDLAVALGYRKVQQVIENHILKL 161
Query: 135 SITDHQDRTP 144
++ P
Sbjct: 162 FQSNLVPADP 171
Score = 71.3 bits (176), Expect = 3e-15
Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 141 DRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL----- 195
D +H A G ++ K + + + + L A+ + + V+ LL
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 196 -NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ E + L LA+ D+V LLL ++ +++
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLL-ERDVDI 95
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 118 bits (299), Expect = 1e-32
Identities = 39/212 (18%), Positives = 76/212 (35%), Gaps = 39/212 (18%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
NG+ + K + L + ++ +T L +A G E + K
Sbjct: 7 NGEIVEKIKDEKSINQNLDFLRN------YRDSYNRTPLMVACMLGMENAIDKLVENFDK 60
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
+DI EG TAL A + + +N +
Sbjct: 61 LED---------KDI---------------EGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL- 195
D +TP+ + G++ + L + A++ +R E L +A+ Y R ++VK LL
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155
Query: 196 -----NKKGIENYNVLHLAAMYSREDVVKLLL 222
+ + + A ++ R++V+K+
Sbjct: 156 LGADISARDLTGLTAEASARIFGRQEVIKIFT 187
Score = 116 bits (293), Expect = 8e-32
Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 32/198 (16%)
Query: 3 ELLSTQTAEQLK-ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS 61
E Q + L+ T L +A + + LV+ ++ ++ EG TAL A
Sbjct: 17 EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV 76
Query: 62 AEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
+ + G+ N +D G+T L + G
Sbjct: 77 KNNRLGIAEKLLSKGSNVNT---------KDF---------------SGKTPLMWSIIFG 112
Query: 120 DEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYN 177
+ + +GA N + + TP+ +A++ G + I++ L + A I R
Sbjct: 113 YSEMSYFLLEHGANVND--RNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLT 169
Query: 178 VLHLAAMYSREDVVKLLL 195
A ++ R++V+K+
Sbjct: 170 AEASARIFGRQEVIKIFT 187
Score = 100 bits (251), Expect = 1e-25
Identities = 29/188 (15%), Positives = 60/188 (31%), Gaps = 36/188 (19%)
Query: 48 IQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGE 107
+ G+ I + + + + +
Sbjct: 3 HMDKNGEIVEKIKDEKSINQNLDFLRNYRDS----------------------------Y 34
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
+T L +A G E + D + T + A +N I E L K ++
Sbjct: 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSN 93
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
+ + L + ++ ++ LL N + +E L +A+ Y R ++VK L
Sbjct: 94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 222 LNKKGINV 229
L + G ++
Sbjct: 154 L-ELGADI 160
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 118 bits (298), Expect = 2e-31
Identities = 41/217 (18%), Positives = 75/217 (34%), Gaps = 36/217 (16%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
+ A D + V L++ G ++ N +G TALH A + + +VK+ AN
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
+ D+ EG LH A++ G + +Y A+ +
Sbjct: 99 INQPDN----------------------EGWIPLHAAASCGYLDIAEYLISQGAHVGAVN 136
Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL--- 195
+ TP+ +A E +++ ++ I D + L
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA-------RKEEERIMLRDARQWLNSGH 189
Query: 196 ---NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ LH+AA +V+KLL+ +V
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDV 225
Score = 117 bits (297), Expect = 3e-31
Identities = 41/215 (19%), Positives = 71/215 (33%), Gaps = 29/215 (13%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
L + V ++ +G A + GD V GA
Sbjct: 7 KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGAD 65
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
N + D G TALH A + + +VK+ AN +
Sbjct: 66 INYANVD------------------------GLTALHQACIDDNVDMVKFLVENGANINQ 101
Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
D++ P+H AA G+ I E L + A + E L +A + E++++ +N
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 197 KKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
++G++ D + L + IN
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNS-GHINDVR 194
Score = 114 bits (287), Expect = 7e-30
Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 36/223 (16%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
G LH AA LD+ L+ G V N EG T L IA E E L++
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
+ + + A ++ N
Sbjct: 161 RQGV----------------------------DIEAARKEEERIMLRDARQWLNSGHIND 192
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
T +H+AA G+ +++LL R + + + + LH AA + +E+ ++L
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251
Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
+ +A + +L K+ + +
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADEDILGYLEELQK-KQNLLHSE 293
Score = 103 bits (259), Expect = 7e-26
Identities = 26/190 (13%), Positives = 66/190 (34%), Gaps = 30/190 (15%)
Query: 46 VDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLM 105
+ + + + + + G E ++ + +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF---------------------- 38
Query: 106 GEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFR 165
+ A + GD V A+ + + T +H A + + +++ L +
Sbjct: 39 -DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN-G 96
Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
A+I + E + LH AA D+ + L+ E L +A + E++++
Sbjct: 97 ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 220 LLLNKKGINV 229
+N++G+++
Sbjct: 157 NEVNRQGVDI 166
Score = 68.7 bits (169), Expect = 2e-13
Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 25/140 (17%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
+ L++ +G TALH+AA K +++++L+ V+I++ +G T LH A+
Sbjct: 183 QWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241
Query: 63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
G E + + + GQTA +A +
Sbjct: 242 WGKEEACRILVENLCDMEAVNK----------------------VGQTAFDVADEDILGY 279
Query: 123 LVKYFYGAKANASITDHQDR 142
L + K N ++ +++
Sbjct: 280 LEE--LQKKQNLLHSEKREK 297
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 114 bits (287), Expect = 4e-31
Identities = 33/193 (17%), Positives = 61/193 (31%), Gaps = 24/193 (12%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYG-TSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
+ R+ + VR+ +D ++ + G + LH A EG A+V+ A
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
++ + T LH+A++ G +V+ KA+ +
Sbjct: 64 RINVMNR----------------------GDDTPLHLAASHGHRDIVQKLLQYKADINAV 101
Query: 138 DHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
+ P+H A G + E L A + K + A RE + +
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160
Query: 198 KGIENYNVLHLAA 210
N
Sbjct: 161 GQNLNRIPYKDTF 173
Score = 103 bits (259), Expect = 5e-27
Identities = 39/184 (21%), Positives = 66/184 (35%), Gaps = 29/184 (15%)
Query: 52 EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTA 111
E + EG+ V+ + N D+ G +
Sbjct: 4 EFMDDIFTQCREGNAVAVRLWLDNTEN-----------DLNQGDD----------HGFSP 42
Query: 112 LHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFER 171
LH A EG A+V+ A ++ + D TP+HLAA +GH I++ L +A I
Sbjct: 43 LHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAV 101
Query: 172 TKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKK 225
+ LH A + ++ V + L+ + + A RE + + K
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE-KM 160
Query: 226 GINV 229
G N+
Sbjct: 161 GQNL 164
Score = 100 bits (251), Expect = 7e-26
Identities = 31/158 (19%), Positives = 54/158 (34%), Gaps = 22/158 (13%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
L T L +G + LH A R+ +V +L+ G +++ N T LH+A++
Sbjct: 22 RLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 81
Query: 63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
G +V+ KA+ + + G LH A G +
Sbjct: 82 HGHRDIVQKLLQYKADINAVNE----------------------HGNVPLHYACFWGQDQ 119
Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
+ + A SI + P+ A + E
Sbjct: 120 VAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157
Score = 87.5 bits (218), Expect = 5e-21
Identities = 29/141 (20%), Positives = 41/141 (29%), Gaps = 32/141 (22%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
DT LHLAA D+V+ L+ Y ++ N G LH A G + + +
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA 126
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
A SI + G+ + A A E L + G
Sbjct: 127 NGALVSICNK----------------------YGEMPVDKAKAPLRELLRERAEKMGQNL 164
Query: 133 NASITDHQDRTPMHLAAENGH 153
N P G
Sbjct: 165 NR--------IPYKDTFWKGT 177
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 112 bits (284), Expect = 7e-31
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 27/181 (14%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
L AA + DL+ + L+ +V+ QNG G+TAL + G+ + + GA
Sbjct: 4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGAN 62
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
+ G +H A+ G ++ +A+ +I
Sbjct: 63 PDLKDRT------------------------GFAVIHDAARAGFLDTLQTLLEFQADVNI 98
Query: 137 TDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
D++ P+HLAA+ GH ++E L +++ R + LA +Y R +VV L+
Sbjct: 99 EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158
Query: 197 K 197
Sbjct: 159 N 159
Score = 87.4 bits (218), Expect = 3e-21
Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
Query: 105 MGE-GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK 163
M E L A+A GD + N + + RT + + G+ I L +
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59
Query: 164 FRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDV 217
A+ + + + V+H AA D ++ LL N + E LHLAA V
Sbjct: 60 -GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118
Query: 218 VKLLLNKKGINV 229
V+ L+ NV
Sbjct: 119 VEFLVKHTASNV 130
Score = 87.1 bits (217), Expect = 4e-21
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 26/148 (17%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
A G TAL + ++ R L+ G + D+++ G +H A+ G ++
Sbjct: 33 AQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
+A+ +I D+ EG LH+A+ EG +V++ + A +
Sbjct: 92 FQADVNIEDN----------------------EGNLPLHLAAKEGHLRVVEFLVKHTA-S 128
Query: 133 NASITDHQDRTPMHLAAENGHASIIELL 160
N +H+ T LA G ++ L+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 67.8 bits (167), Expect = 5e-14
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 27/120 (22%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
G +H AAR LD ++ L+++ V+I++ EG LH+A+ EG +V++
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGA 130
+ A +N +H +G TA +A G +V GA
Sbjct: 125 HTA-SNVGHRNH----------------------KGDTACDLARLYGRNEVVSLMQANGA 161
Score = 37.7 bits (89), Expect = 0.001
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYG 43
E L TA + GDTA LA ++V ++ G
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 113 bits (286), Expect = 2e-30
Identities = 53/244 (21%), Positives = 86/244 (35%), Gaps = 49/244 (20%)
Query: 18 INGDTALHLAARKRDLDMV-RILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAK 76
+ ++ L LAA++ D+ + ++L G V + G+TALHIA+ + A
Sbjct: 1 MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANA 134
+ EGQTALHIA + LV+ GA +A
Sbjct: 61 PE--LVFEPMTSELY---------------EGQTALHIAVINQNVNLVRALLARGASVSA 103
Query: 135 -----------SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAA 183
+ P+ AA G I+ LL + A I + VLH+
Sbjct: 104 RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILI 162
Query: 184 MYSREDVV----KLLL------NKKGIENYN------VLHLAAMYSREDVVKLLLNKKGI 227
+ + LLL + K +E LA + + + L+ K
Sbjct: 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ-KRK 221
Query: 228 NVAA 231
++AA
Sbjct: 222 HIAA 225
Score = 106 bits (266), Expect = 1e-27
Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 32/215 (14%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYG-----TSVDIQNGEGQT 55
+ +LL + E + G+TALH+AA +L+ +L++ + + EGQT
Sbjct: 19 LSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQT 77
Query: 56 ALHIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALH 113
ALHIA + LV+ GA +A T L+ G+ L
Sbjct: 78 ALHIAVINQNVNLVRALLARGASVSARATG-----------SVFHYRPHNLIYYGEHPLS 126
Query: 114 IASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGH----ASIIELLADK---- 163
A+ G E +V+ +GA A D T +H+ + + LL
Sbjct: 127 FAACVGSEEIVRLLIEHGADIRA--QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184
Query: 164 -FRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
++ + LA + + + L+ K
Sbjct: 185 HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
Score = 70.7 bits (174), Expect = 1e-14
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 26/136 (19%)
Query: 7 TQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDE 66
+ + G+ L AA ++VR+L+++G + Q+ G T LHI + ++
Sbjct: 108 SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNK 167
Query: 67 ALVKYF------YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
Y + + +G T +A EG+
Sbjct: 168 TFACQMYNLLLSYDGGDHLKSLELVPNN------------------QGLTPFKLAGVEGN 209
Query: 121 EALVKYF--YGAKANA 134
+ ++ A
Sbjct: 210 IVMFQHLMQKRKHIAA 225
Score = 37.2 bits (87), Expect = 0.004
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQ 54
G T LA + ++ M + L+ + +
Sbjct: 196 QGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 113 bits (283), Expect = 4e-30
Identities = 51/221 (23%), Positives = 83/221 (37%), Gaps = 32/221 (14%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
T + TALH A ++V L+ G V+ ++ G + LHIA++ G + +VK
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV 94
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
A+ + + G T LH A+++ + AN
Sbjct: 95 KGAHVNAVNQ----------------------NGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
DH D T MH AA G+ ++ +L +AS + E LHLA R + K L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 195 L------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ + E L +A ++ L +G
Sbjct: 192 VTQGASIYIENKEEKTPLQVAK--GGLGLILKRLA-EGEEA 229
Score = 112 bits (281), Expect = 1e-29
Identities = 42/213 (19%), Positives = 80/213 (37%), Gaps = 29/213 (13%)
Query: 18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
++ +LA + ++ ++ + + + +TALH A + G +V++
Sbjct: 5 VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
+ D G + LHIA++ G + +VK A+ +
Sbjct: 65 PVNDKDD----------------------AGWSPLHIAASAGXDEIVKALLVKGAHVNAV 102
Query: 138 DHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL-- 195
+ TP+H AA I +L + A+ + + +H AA +V +LL
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161
Query: 196 ----NKKGIENYNVLHLAAMYSREDVVKLLLNK 224
N + E LHLA R + K L+ +
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194
Score = 69.5 bits (170), Expect = 4e-14
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 24/149 (16%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
+ A NG T LH AA K ++ +L++ G + D ++ TA+H A+A+G+ +V
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
KA+ +I D EG T LH+A E K+
Sbjct: 158 LLFYKASTNIQDT----------------------EGNTPLHLACDEERVEEAKFLVTQG 195
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELL 160
A+ I + +++TP+ +A G +I
Sbjct: 196 ASIYIENKEEKTPLQVAK--GGLGLILKR 222
Score = 51.0 bits (122), Expect = 8e-08
Identities = 30/93 (32%), Positives = 40/93 (43%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
A TA+H AA K +L MV IL+ Y S +IQ+ EG T LH+A E K+
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLL 104
A+ I + + A G L L
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223
Score = 30.2 bits (68), Expect = 0.62
Identities = 4/33 (12%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 197 KKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ + N + +LA +++ + +L
Sbjct: 2 EGCVSNIMICNLAYSGKLDELKERILA-DKSLA 33
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 110 bits (277), Expect = 8e-30
Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 26/178 (14%)
Query: 20 GDTALHLAARKRDLDMVRILVD-YGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
L AA + D+ VR L+ D N G+TAL + G A+ A+
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGAS 60
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
++ D G + +H A+ G +K A+ ++ D
Sbjct: 61 PNVQDT----------------------SGTSPVHDAARTGFLDTLKVLVEHGADVNVPD 98
Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
P+HLA + GH +++ LA + + + R L LA +D+V +L
Sbjct: 99 GTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 92.5 bits (231), Expect = 3e-23
Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 25/158 (15%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
LL + A G TAL + + L+ G S ++Q+ G + +H A+
Sbjct: 20 RLLHRELVH-PDALNRFGKTALQVMMFGS-TAIALELLKQGASPNVQDTSGTSPVHDAAR 77
Query: 63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
G +K A+ ++ D G +H+A EG A
Sbjct: 78 TGFLDTLKVLVEHGADVNVPDG----------------------TGALPIHLAVQEGHTA 115
Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
+V + A+++ D + TP+ LA + G ++++L
Sbjct: 116 VVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 84.8 bits (211), Expect = 2e-20
Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 13/132 (9%)
Query: 108 GQTALHIASAEGDEALVKYF---YGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
L A+A GD V+ +A + +T + + G +I L +
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMM-FGSTAIALELLKQ- 57
Query: 165 RASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVV 218
AS + + +H AA D +K+L+ N +HLA VV
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117
Query: 219 KLLLNKKGINVA 230
L + ++
Sbjct: 118 SFLAAESDLHRR 129
Score = 32.4 bits (75), Expect = 0.093
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVD 41
G T L LA ++ D+V IL
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQG 154
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 111 bits (280), Expect = 2e-29
Identities = 43/228 (18%), Positives = 73/228 (32%), Gaps = 31/228 (13%)
Query: 18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
I G +L R + +G V L +S EG+ LV+
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
+ S+ + EG TALH A G +VK+ N +
Sbjct: 62 DPSLPND----------------------EGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99
Query: 138 DHQDRTPMHLAAENGHASIIELLADKFRASIFERTK---ENYNVLHLAAMYSREDVVKLL 194
D TP+H AA + + + L + A++F T + + L
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Query: 195 LNK---KGIENYNVLHLAAMYSREDVVKLLLNKK-GINVAALGGEDLT 238
GI N V++ Y ++ +L + + + + ED
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEI 206
Score = 98.5 bits (246), Expect = 1e-24
Identities = 37/207 (17%), Positives = 72/207 (34%), Gaps = 35/207 (16%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
L ++ + + D+V+ ++ + N EG TALH A G +VK+ +G
Sbjct: 36 LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANA 134
NA+ +D G T LH A++ + + K+ GA A
Sbjct: 96 VNAADSD------------------------GWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 135 -SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK- 192
+ +D Q E G+ + L + + K L + +++
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMK 190
Query: 193 ----LLLNKKGIENYNVLHLAAMYSRE 215
+ + + E+ A + +E
Sbjct: 191 EGDCMTIIHREDEDEIEWWWARLNDKE 217
Score = 88.4 bits (220), Expect = 7e-21
Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 36/201 (17%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
G TALH A ++V+ LV +G +V+ + +G T LH A++ + + K+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
+ A + + EG ++ YG +
Sbjct: 125 SGAAVFAMTYSD-------------------MQTAADKCEEMEEGYTQCSQFLYGVQEKM 165
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
I + + EL + + ++H ED ++
Sbjct: 166 GIMNKGVIYALWDYEPQNDD---ELPMKE---------GDCMTIIHRED----EDEIEWW 209
Query: 195 L-NKKGIENYNVLHLAAMYSR 214
E Y +L +Y R
Sbjct: 210 WARLNDKEGYVPRNLLGLYPR 230
Score = 26.8 bits (60), Expect = 9.7
Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
+ L + + AL + D D + + ++ + E + A
Sbjct: 156 QFLYGVQEK-MGIMNKGVIYALWDYEPQND-DELPMKEGDCMTIIHREDEDEIEWWWARL 213
Query: 63 EGDEALV 69
E V
Sbjct: 214 NDKEGYV 220
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 108 bits (272), Expect = 6e-29
Identities = 32/208 (15%), Positives = 56/208 (26%), Gaps = 41/208 (19%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-YGAKA 77
G + + V E +T A+ + DE +
Sbjct: 13 EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLEDRDV 69
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
+A D G+TAL + G + V+ A A+
Sbjct: 70 DA---------VD---------------ENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 105
Query: 138 DHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
D + T +H+AA ++E L + A I + L LA +
Sbjct: 106 DMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNP-- 162
Query: 197 KKGIENYNVLHLAAMYSREDVVKLLLNK 224
+ E V+ +L +
Sbjct: 163 ---------MQFGRRIGLEKVINVLEGQ 181
Score = 101 bits (253), Expect = 4e-26
Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 37/191 (19%)
Query: 49 QNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG 108
GEG I +G A+ ++ E
Sbjct: 10 TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD-------------------------VVSEY 44
Query: 109 QTALHIASAEGDEALVKYF-YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
+T A+ + DE + +A D RT + A G + LLA+ A
Sbjct: 45 ETPWWTAARKADEQALSQLLEDRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEA-GAD 101
Query: 168 IFER-TKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKL 220
+ R + LH+AA Y R +VV+ L+ + L LA +
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGN 161
Query: 221 LLNKKGINVAA 231
+ + G +
Sbjct: 162 PM-QFGRRIGL 171
Score = 73.7 bits (182), Expect = 5e-16
Identities = 31/150 (20%), Positives = 46/150 (30%), Gaps = 40/150 (26%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYFY 73
A NG TAL A VR+L + G +D ++ G TALH+A+ +V+
Sbjct: 71 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 130
Query: 74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
A+ + D G TAL +A
Sbjct: 131 ELGADIEVEDE----------------------RGLTALELAREILKTTPKG-------- 160
Query: 134 ASITDHQDRTPMHLAAENGHASIIELLADK 163
PM G +I +L +
Sbjct: 161 ---------NPMQFGRRIGLEKVINVLEGQ 181
Score = 65.2 bits (160), Expect = 6e-13
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 10/104 (9%)
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
K S T + + ++GH+ + A + E AA + E
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AADV---VSEYETPWWTAARKADEQA 59
Query: 191 VKLLL-----NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ LL + L A + V+LL + G ++
Sbjct: 60 LSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADL 102
Score = 26.7 bits (60), Expect = 8.8
Identities = 4/45 (8%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 189 DVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALG 233
+V K++ ++ E + +V +
Sbjct: 1 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSY-IAADVVSEY 44
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 109 bits (276), Expect = 7e-29
Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 29/211 (13%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
+T AARK D + L++ VD + G+TAL + G + V+ A A+
Sbjct: 44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITD 138
D +G G TALH+A+ +V+ A+ + D
Sbjct: 103 LDHRDMRG---------------------GLTALHMAAGYVRPEVVEALVELGADIEVED 141
Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK 198
+ T + LA E + I E + ++ +V +++ +
Sbjct: 142 ERGLTALELAREILKTTPKGNPMQF-GRRIGL---EKVINVLEGQVFEYAEVDEIVEKRG 197
Query: 199 GIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ +V +L D +
Sbjct: 198 --KGKDVEYLVRWKDGGDCEWVKG-VHVAED 225
Score = 109 bits (275), Expect = 1e-28
Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 34/219 (15%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-YGAKA 77
G + + V E +T A+ + DE +
Sbjct: 14 EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLEDRDV 70
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
+A D G+TAL + G + V+ A A+
Sbjct: 71 DA---------VDE---------------NGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106
Query: 138 DHQD-RTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLLN 196
D + T +H+AA ++E L + A I + L LA + +
Sbjct: 107 DMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILKTTPKGNPMQ 165
Query: 197 K---KGIENYNVLHLAAMYSREDVVKLLLNKKGINVAAL 232
G+E + ++ +V +++ K+G
Sbjct: 166 FGRRIGLEKVINVLEGQVFEYAEVDEIVE-KRGKGKDVE 203
Score = 105 bits (264), Expect = 4e-27
Identities = 37/220 (16%), Positives = 62/220 (28%), Gaps = 56/220 (25%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANA 79
G+ + +R GEG I +G A+
Sbjct: 1 GEVNKIIGSRT-------------------AGEGAMEYLIEWKDGHSPSWVPSSYIAAD- 40
Query: 80 SITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF-YGAKANASITD 138
++ E +T A+ + DE + +A D
Sbjct: 41 ------------------------VVSEYETPWWTAARKADEQALSQLLEDRDVDA--VD 74
Query: 139 HQDRTPMHLAAENGHASIIELLADKFRASIFERTKEN-YNVLHLAAMYSREDVVKLLL-- 195
RT + A G + LLA+ A + R LH+AA Y R +VV+ L+
Sbjct: 75 ENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL 133
Query: 196 ----NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
+ L LA + + + G +
Sbjct: 134 GADIEVEDERGLTALELAREILKTTPKGNPM-QFGRRIGL 172
Score = 94.6 bits (236), Expect = 4e-23
Identities = 34/203 (16%), Positives = 61/203 (30%), Gaps = 43/203 (21%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE-GQTALHIASAEGDEALVKYFY 73
A NG TAL A VR+L + G +D ++ G TALH+A+ +V+
Sbjct: 72 AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131
Query: 74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAK 131
A+ + D G TAL +A +G +
Sbjct: 132 ELGADIEVEDE----------------------RGLTALELAREILKTTPKGNPMQFGRR 169
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
+ + +A + E++ + + +V +L D
Sbjct: 170 IG-----LEKVINVLEGQVFEYAEVDEIVEKR---------GKGKDVEYLVRWKDGGDCE 215
Query: 192 KLLLNKKGIEN----YNVLHLAA 210
+ + + L A
Sbjct: 216 WVKGVHVAEDVAKDYEDGLEYAV 238
Score = 80.0 bits (198), Expect = 9e-18
Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 12/140 (8%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
G TALH+AA ++V LV+ G +++++ G TAL +A +G +
Sbjct: 110 GGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 169
Query: 77 ANASITDHQGIQRDIAAA--GTSVLANCLLM-GEGQTALHIASAEGDEALVKYFYGAKAN 133
+ + + + + + G+G+ ++ + A
Sbjct: 170 IG-----LEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224
Query: 134 ASITDHQDRTPMHLAAENGH 153
D++ + A
Sbjct: 225 DVAKDYE--DGLEYAVAESV 242
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 106 bits (267), Expect = 2e-28
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 32/180 (17%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
+ L AAR D VRIL+ G + G + LH+A+ G + + G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANA 134
+A R +T LH+A++EG +V+ +GA NA
Sbjct: 60 RDA---------RTK---------------VDRTPLHMAASEGHANIVEVLLKHGADVNA 95
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
D T +H A E+ H ++ELL A + ++K ++ ED+ ++L
Sbjct: 96 --KDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 100 bits (252), Expect = 3e-26
Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 34/178 (19%)
Query: 52 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
+ L A+ G + V+ GA G
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTTDW-------------------------LGT 35
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
+ LH+A+ G + + A + DRTP+H+AA GHA+I+E+L A +
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH-GADVN 94
Query: 170 ERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
+ LH A ++ ++VV+LL+ + + ++ ED+ ++L
Sbjct: 95 AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 96.3 bits (241), Expect = 1e-24
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 13/131 (9%)
Query: 107 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
+ L A+ G + V+ GA D +P+HLAA+ GH S E+L
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRA- 56
Query: 165 RASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVV 218
S RTK + LH+AA ++V++LL N K + LH A ++ ++VV
Sbjct: 57 GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV 116
Query: 219 KLLLNKKGINV 229
+LL+ K G +V
Sbjct: 117 ELLI-KYGADV 126
Score = 94.8 bits (237), Expect = 4e-24
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 30/150 (20%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
T G + LHLAA+ +L+ G S D + +T LH+A++EG +V+
Sbjct: 29 TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGA 130
+GA NA +D+ TALH A+ + +V+ YGA
Sbjct: 89 HGADVNA---------KDM---------------LKMTALHWATEHNHQEVVELLIKYGA 124
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELL 160
+ +T ++ +NG+ + E+L
Sbjct: 125 DVHT--QSKFCKTAFDISIDNGNEDLAEIL 152
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 106 bits (266), Expect = 2e-27
Identities = 42/210 (20%), Positives = 64/210 (30%), Gaps = 33/210 (15%)
Query: 18 INGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKA 77
+N L AA +L++V+ V N EG TALH A + ++V + A A
Sbjct: 19 LNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78
Query: 78 NASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASIT 137
N + D G T LH A++ D + A T
Sbjct: 79 NVNSPDS----------------------HGWTPLHCAASCNDTVICMALVQHGAAIFAT 116
Query: 138 DHQD-RTPMHLAA--ENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLL 194
D T G+A LAD S+ L + D +
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSGAVYALWDYS-AEFGDELSFR 174
Query: 195 L------NKKGIENYNVLHLAAMYSREDVV 218
++ AA++ +E V
Sbjct: 175 EGESVTVLRRDGPEETDWWWAALHGQEGYV 204
Score = 91.2 bits (227), Expect = 7e-22
Identities = 42/214 (19%), Positives = 67/214 (31%), Gaps = 35/214 (16%)
Query: 36 VRILVDYGTSVDIQN---GEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIA 92
+R ++ S L A+ G+ +V+ + S +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-------- 52
Query: 93 AAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENG 152
EG TALH A + ++V + A AN + D TP+H AA
Sbjct: 53 --------------EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN 98
Query: 153 HASIIELLADKFRASIFERTKEN-YNVLHLAAMYSR--EDVVKLLLN---KKGIENYNVL 206
I L A+IF T + Y D L + G+ N +
Sbjct: 99 DTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAV 157
Query: 207 HLAAMYSRE--DVVKLLLNKKGINVAALGGEDLT 238
+ YS E D + + + V G + T
Sbjct: 158 YALWDYSAEFGDELSFREG-ESVTVLRRDGPEET 190
Score = 87.7 bits (218), Expect = 1e-20
Identities = 27/143 (18%), Positives = 43/143 (30%), Gaps = 26/143 (18%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNG-EGQTALHIASA--EGDEALVKYFYGA 75
+G T LH AA D + LV +G ++ +G TA EG Y
Sbjct: 86 HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145
Query: 76 KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANAS 135
+ + + + AL SAE + + + G
Sbjct: 146 EQSMGLMNS----------------------GAVYALWDYSAEFGD-ELSFREGESVTVL 182
Query: 136 ITDHQDRTPMHLAAENGHASIIE 158
D + T AA +G +
Sbjct: 183 RRDGPEETDWWWAALHGQEGYVP 205
Score = 64.6 bits (158), Expect = 2e-12
Identities = 28/147 (19%), Positives = 39/147 (26%), Gaps = 26/147 (17%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRD--LDMVRILVDYGTSVDIQNGEGQTALHIA 60
L A T +G TA R+ D L D S+ + N AL
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163
Query: 61 SAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
SAE + + + G D G +T A+ G
Sbjct: 164 SAEFGD-ELSFREGESVTVLRRD----------------------GPEETDWWWAALHGQ 200
Query: 121 EALVKYFY-GAKANASITDHQDRTPMH 146
E V Y G + + H
Sbjct: 201 EGYVPRNYFGLFPRVKPQRSKVKHHHH 227
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 102 bits (257), Expect = 2e-27
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 26/147 (17%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
NG T LHLAAR L++V++L++ G V+ ++ G+T LH+A+ G +VK GA
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
NA + G+T LH+A+ G +VK A A+ +
Sbjct: 61 VNAKDKN------------------------GRTPLHLAARNGHLEVVKLLLEAGADVNA 96
Query: 137 TDHQDRTPMHLAAENGHASIIELLADK 163
D RTP+HLAA NGH +++LL +
Sbjct: 97 KDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 95.1 bits (238), Expect = 1e-24
Identities = 49/123 (39%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+T LH+A+ G +VK A A+ + D RTP+HLAA NGH +++LL + A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAD 60
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
+ + K LHLAA +VVKLLL N K LHLAA +VVKLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 222 LNK 224
L
Sbjct: 121 LEA 123
Score = 73.9 bits (183), Expect = 1e-16
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 22/112 (19%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
A NG T LHLAAR L++V++L++ G V+ ++ G+T LH+A+ G +VK
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY 126
A A+ + D G+T LH+A+ G +VK
Sbjct: 90 AGADVNAKDK----------------------NGRTPLHLAARNGHLEVVKL 119
Score = 46.2 bits (111), Expect = 9e-07
Identities = 26/57 (45%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 179 LHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
LHLAA +VVKLLL N K LHLAA +VVKLLL + G +V
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADV 61
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 106 bits (265), Expect = 4e-27
Identities = 41/226 (18%), Positives = 65/226 (28%), Gaps = 41/226 (18%)
Query: 19 NGDTALHLA---ARKRDLDMVRILVDYGTSVDIQ-----------NGEGQTALHIASAEG 64
G T L A D + +L+D D +GQTALHIA
Sbjct: 53 TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112
Query: 65 DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV 124
+ LV A+ + + G+ L +A+ A+V
Sbjct: 113 NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF--------GELPLSLAACTNQLAIV 164
Query: 125 KYFY---GAKANASITDHQDRTPMHLAAENGHASIIELLA---------------DKFRA 166
K+ A+ S D T +H E ++
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK 224
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMY 212
++ L LAA + V+ +L + I H AA +
Sbjct: 225 LEEITNRKGLTPLALAASSGKIGVLAYILQ-REIHEPECRHAAAHH 269
Score = 102 bits (255), Expect = 1e-25
Identities = 45/261 (17%), Positives = 73/261 (27%), Gaps = 62/261 (23%)
Query: 14 KATTINGDTALHLAARKRDLDMVRILVDY-------GTSVDIQNGE-GQTALHIASA--- 62
K + ++ A + + + L+ + T + ++ E G+T L A
Sbjct: 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66
Query: 63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLM-GEGQTALHIASAEGDE 121
G + + V A+ +GQTALHIA +
Sbjct: 67 NGQNDTIALLLDVAR------------KTDSLKQFVNASYTDSYYKGQTALHIAIERRNM 114
Query: 122 ALVKYF--YGAKANA------------SITDHQDRTPMHLAAENGHASIIELLADK--FR 165
LV GA A + P+ LAA +I++ L
Sbjct: 115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP 174
Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLLN-----------KKGIENYNV--------- 205
A I R VLH + V K +
Sbjct: 175 ADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL 234
Query: 206 --LHLAAMYSREDVVKLLLNK 224
L LAA + V+ +L +
Sbjct: 235 TPLALAASSGKIGVLAYILQR 255
Score = 80.2 bits (198), Expect = 1e-17
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 18/138 (13%)
Query: 20 GDTALHLAARKRDLDMVRILVDYGTS---VDIQNGEGQTALHIASAEGDEALVKYFYGAK 76
G+ L LAA L +V+ L+ + ++ G T LH D + +
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMG-EGQTALHIASAEGDEALVKYFYGAKANAS 135
I A L + +G T L +A++ G ++ Y + +
Sbjct: 208 MYNEILIL-------GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-- 258
Query: 136 ITDHQDRTPMHLAAENGH 153
+ H AA + H
Sbjct: 259 -----EPECRHAAAHHHH 271
Score = 55.6 bits (134), Expect = 4e-09
Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 28/129 (21%)
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASI-------FERTKENYNVLHLA 182
A DR + A + +E L + S F+ + L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 183 AMYSR---EDVVKLLL-----------------NKKGIENYNVLHLAAMYSREDVVKLLL 222
+ D + LLL + LH+A +V LL+
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLV 121
Query: 223 NKKGINVAA 231
+ G +V A
Sbjct: 122 -ENGADVQA 129
Score = 49.0 bits (117), Expect = 5e-07
Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 45/123 (36%)
Query: 15 ATTINGDTALHLAARKRDLDMVRI----------------LVDYGTSVDIQNGEGQTALH 58
A G+T LH D + L +I N +G T L
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238
Query: 59 IASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAE 118
+A++ G ++ Y +QR+I H A+
Sbjct: 239 LAASSGKIGVLAYI--------------LQREI---------------HEPECRHAAAHH 269
Query: 119 GDE 121
Sbjct: 270 HHH 272
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 102 bits (257), Expect = 7e-27
Identities = 44/185 (23%), Positives = 66/185 (35%), Gaps = 35/185 (18%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDI--QNGEGQTALHIASAEGDEALVKYF--YG 74
D L AA+ D++ V+ L SV+ G T LH A+ ++V+Y +G
Sbjct: 7 EADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAKA 132
A +A D G LH A + G + + +GA
Sbjct: 66 ADVHA--KDK----------------------GGLVPLHNACSYGHYEVAELLVKHGAVV 101
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVK 192
N D TP+H AA G I +LL A ++ ++ L L D+
Sbjct: 102 NV--ADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVK-DGDTDIQD 157
Query: 193 LLLNK 197
LL
Sbjct: 158 LLRGD 162
Score = 95.1 bits (238), Expect = 4e-24
Identities = 43/186 (23%), Positives = 60/186 (32%), Gaps = 39/186 (20%)
Query: 50 NGEGQTALHIASAEGDEALVKYF---YGAKANASITDHQGIQRDIAAAGTSVLANCLLMG 106
N E L A+ GD VK + G
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD---------IE---------------G 40
Query: 107 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
T LH A+ ++V+Y +GA +A D P+H A GH + ELL
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHA--KDKGGLVPLHNACSYGHYEVAELLVKH- 97
Query: 165 RASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVV 218
A + + LH AA + ++ KLLL KK + L L D+
Sbjct: 98 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQ 156
Query: 219 KLLLNK 224
LL
Sbjct: 157 DLLRGD 162
Score = 91.7 bits (229), Expect = 9e-23
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query: 107 EGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKF 164
E L A+ GD VK + N + + TP+H AA S++E L
Sbjct: 7 EADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH- 64
Query: 165 RASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVV 218
A + + K LH A Y +V +LL+ N + + LH AA + ++
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC 124
Query: 219 KLLLNKKGINV 229
KLLL + G +
Sbjct: 125 KLLL-QHGADP 134
Score = 85.5 bits (213), Expect = 2e-20
Identities = 35/161 (21%), Positives = 57/161 (35%), Gaps = 32/161 (19%)
Query: 4 LLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAE 63
L + Q+ + T LH AA + +V L+ +G V ++ G LH A +
Sbjct: 27 LCTVQSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY 85
Query: 64 GDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDE 121
G + + +GA N + T LH A+A+G
Sbjct: 86 GHYEVAELLVKHGAVVNVADLW------------------------KFTPLHEAAAKGKY 121
Query: 122 ALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELL 160
+ K +GA + TP+ L +G I +LL
Sbjct: 122 EICKLLLQHGADPTK--KNRDGNTPLDLVK-DGDTDIQDLL 159
Score = 72.8 bits (180), Expect = 7e-16
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE 188
GA N+ + + AA+ G ++ L + + LH AA Y+R
Sbjct: 1 GAMGNS-----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV 55
Query: 189 DVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
VV+ LL + K LH A Y +V +LL+ K G V
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVV 101
Score = 65.5 bits (161), Expect = 3e-13
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 29/120 (24%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
A G LH A ++ +LV +G V++ + T LH A+A+G + K
Sbjct: 70 AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 73 YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGA 130
+GA ++ +G T L + +GD + A
Sbjct: 130 HGADPTK---------KNR---------------DGNTPLDLV-KDGDTDIQDLLRGDAA 164
Score = 35.4 bits (83), Expect = 0.009
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 196 NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLT 238
N + L AA + VK L + +N + G T
Sbjct: 5 NSEA---DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST 44
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 100 bits (252), Expect = 3e-26
Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 28/177 (15%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
++ L AA + ++ VR L++ G + + N G+ + + G + +
Sbjct: 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLL 65
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
A + D +H A+ EG + + A A
Sbjct: 66 HGAEPNCADPAT---------------------LTRPVHDAAREGFLDTLVVLHRAGARL 104
Query: 135 SITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVV 191
+ D R P+ LA E GH + L + A D+
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNH-----ARIDAAEGPSDIP 155
Score = 88.3 bits (220), Expect = 1e-21
Identities = 30/176 (17%), Positives = 49/176 (27%), Gaps = 26/176 (14%)
Query: 45 SVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLL 104
+ L A+A G V+ A AN + +
Sbjct: 4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS-------------------- 43
Query: 105 MGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRT-PMHLAAENGHASIIELLADK 163
G+ + + G + + A + D T P+H AA G + +L
Sbjct: 44 --YGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100
Query: 164 FRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK-GIENYNVLHLAAMYSREDVV 218
A + R + LA DV + L G N + A D+
Sbjct: 101 -GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGPSDIP 155
Score = 84.5 bits (210), Expect = 3e-20
Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 9/125 (7%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
L A+A G V+ A AN + + R P+ + G A + ELL A
Sbjct: 11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLH-GA 68
Query: 167 SIFERTKENYNV-LHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
+H AA D + +L + + + LA DV +
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128
Query: 220 LLLNK 224
L
Sbjct: 129 YLRAA 133
Score = 80.2 bits (199), Expect = 1e-18
Identities = 19/147 (12%), Positives = 40/147 (27%), Gaps = 33/147 (22%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQT-ALHIASAEGDEALVKYFY 73
A G + + + +L+ +G + + T +H A+ EG + +
Sbjct: 40 APNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98
Query: 74 GAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--YGAK 131
A A + D G+ + +A G + +Y
Sbjct: 99 RAGARLDVRDA----------------------WGRLPVDLAEELGHRDVARYLRAAAGG 136
Query: 132 ANASITDHQDRTPMHLAAENGHASIIE 158
+ A G + I +
Sbjct: 137 TRG-------SNHARIDAAEGPSDIPD 156
Score = 62.1 bits (152), Expect = 4e-12
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 9/101 (8%)
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDV 190
+ A + + AA G + L + A+ + + M S V
Sbjct: 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMMMGSAR-V 59
Query: 191 VKLLL------NKKGIENYNV-LHLAAMYSREDVVKLLLNK 224
+LLL N +H AA D + +L
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 99.4 bits (249), Expect = 5e-26
Identities = 30/149 (20%), Positives = 54/149 (36%), Gaps = 26/149 (17%)
Query: 14 KATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF- 72
T G+T LH+A+ K D+ V L+ G+ ++++ G T LH A G +V+
Sbjct: 4 PFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 73 -YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
+ A N + + LH A+ G +VK
Sbjct: 64 QHKALVNTTGYQ------------------------NDSPLHDAAKNGHVDIVKLLLSYG 99
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + + P+ + S++ L
Sbjct: 100 ASRNAVNIFGLRPVDYTDDESMKSLLLLP 128
Score = 92.5 bits (231), Expect = 2e-23
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+T LHIAS +GD V+Y ++ ++ DH TP+H A +GH ++ELL +A
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KAL 68
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
+ +N + LH AA D+VKLLL N I + S + ++ L
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128
Query: 222 LNKKGINVA 230
+ + +
Sbjct: 129 EKNESSSAS 137
Score = 88.6 bits (221), Expect = 6e-22
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 23/147 (15%)
Query: 50 NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
N G+T LHIAS +GD V+Y ++ ++ DH G
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH----------------------AGW 44
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
T LH A G +V+ KA + T +Q+ +P+H AA+NGH I++LL AS
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRN 103
Query: 170 ERTKENYNVLHLAAMYSREDVVKLLLN 196
+ S + ++ L
Sbjct: 104 AVNIFGLRPVDYTDDESMKSLLLLPEK 130
Score = 73.6 bits (182), Expect = 2e-16
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE 188
G T+H+ T +H+A+ G +E L + + + LH A +
Sbjct: 1 GIDPF---TNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHGHL 56
Query: 189 DVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
VV+LLL N G +N + LH AA D+VKLLL G +
Sbjct: 57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL-SYGASR 102
Score = 29.3 bits (67), Expect = 0.74
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYG 43
A I G + + ++ +
Sbjct: 104 AVNIFGLRPVDYTDDESMKSLLLLPEKNE 132
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 96.4 bits (241), Expect = 6e-25
Identities = 29/146 (19%), Positives = 48/146 (32%), Gaps = 22/146 (15%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
+ D L AA + ++ VR L++ G + N G+ + + G + +
Sbjct: 7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAELLLL 65
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANA 134
A + D +H A+ EG + + A A
Sbjct: 66 HGAEPNCADPAT---------------------LTRPVHDAAREGFLDTLVVLHRAGARL 104
Query: 135 SITDHQDRTPMHLAAENGHASIIELL 160
+ D R P+ LA E GH I L
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYL 130
Score = 87.1 bits (217), Expect = 2e-21
Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 25/156 (16%)
Query: 43 GTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANC 102
+ + G L A+A G V+ A A+ + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR------------------ 43
Query: 103 LLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRT-PMHLAAENGHASIIELLA 161
G+ + + G + + A + D T P+H AA G + +L
Sbjct: 44 ----FGRRPIQVM-MMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH 98
Query: 162 DKFRASIFERTKENYNVLHLAAMYSREDVVKLLLNK 197
A + + LA D+ + L
Sbjct: 99 RA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 87.1 bits (217), Expect = 2e-21
Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 9/125 (7%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
L A+A G V+ A A+ + + R P+ + G A + ELL A
Sbjct: 11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLH-GA 68
Query: 167 SIFERTKENYNV-LHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
+H AA D + +L + + LA D+ +
Sbjct: 69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128
Query: 220 LLLNK 224
L
Sbjct: 129 YLHAA 133
Score = 63.2 bits (155), Expect = 1e-12
Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 9/102 (8%)
Query: 130 AKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRED 189
+ + AA G + L + A + + +
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMM-MGSAQ 58
Query: 190 VVKLLL------NKKGIENYNV-LHLAAMYSREDVVKLLLNK 224
V +LLL N +H AA D + +L
Sbjct: 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 95.5 bits (239), Expect = 1e-24
Identities = 27/142 (19%), Positives = 44/142 (30%), Gaps = 26/142 (18%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
D A + DLD V+ V G V+ G+ LH A+ G ++++ GA
Sbjct: 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
NA T L A EG + VK A+ ++
Sbjct: 66 INAPDKH------------------------HITPLLSAVYEGHVSCVKLLLSKGADKTV 101
Query: 137 TDHQDRTPMHLAAENGHASIIE 158
T ++++
Sbjct: 102 KGPDGLTAFEATDNQAIKALLQ 123
Score = 87.5 bits (218), Expect = 1e-21
Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 7/118 (5%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
A GD VK + + + T R P+H AA+ G I+E L K A
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GAD 65
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVK 219
I K + L A VKLLL KG + + + +++
Sbjct: 66 INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 82.1 bits (204), Expect = 1e-19
Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 23/143 (16%)
Query: 50 NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
A GD VK + + + T G+
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----------------------GGR 41
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIF 169
LH A+ G ++++ A+ + D TP+ A GH S ++LL K A
Sbjct: 42 KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKT 100
Query: 170 ERTKENYNVLHLAAMYSREDVVK 192
+ + + + +++
Sbjct: 101 VKGPDGLTAFEATDNQAIKALLQ 123
Score = 72.4 bits (179), Expect = 4e-16
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 22/111 (19%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYG 74
T G LH AA L+++ L+ G ++ + T L A EG + VK
Sbjct: 35 RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 94
Query: 75 AKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
A+ ++ +G TA + +AL++
Sbjct: 95 KGADKTVKGP----------------------DGLTAFEATDNQAIKALLQ 123
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 97.2 bits (242), Expect = 6e-24
Identities = 33/236 (13%), Positives = 60/236 (25%), Gaps = 51/236 (21%)
Query: 19 NGDTALHLAA---RKRDLDMVRILVDYG-----------TSVDIQNGEGQTALHIASAEG 64
G T L A + + L+ + +G +ALHIA +
Sbjct: 42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR 101
Query: 65 DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV 124
VK A+ + + G+ L +A+ +V
Sbjct: 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCF---------YFGELPLSLAACTKQWDVV 152
Query: 125 KY---FYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHL 181
Y A+ TD T +H + L +
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIAD------------------NSPENSALVI 194
Query: 182 AAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAA 231
+ L + L LAA + ++ + +L + + AA
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ-REFSGAA 249
Score = 83.3 bits (206), Expect = 7e-19
Identities = 28/161 (17%), Positives = 46/161 (28%), Gaps = 42/161 (26%)
Query: 6 STQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGT---SVDIQNGEGQTALHIASA 62
+ G+ L LAA + D+V L++ S++ + G T LH
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181
Query: 63 EGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEA 122
D +AL I +G
Sbjct: 182 IADN---------------------------------------SPENSALVIHMYDGLLQ 202
Query: 123 LVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK 163
+ I++HQ TP+ LAA+ G I + +
Sbjct: 203 MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
Score = 63.3 bits (154), Expect = 9e-12
Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 41/173 (23%)
Query: 108 GQTALHIASAEGDEALVKYF--YGAKANASITDHQD------RTPMHLAA---ENGHASI 156
+ L + G + Y + +TD +T + A ++G +
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61
Query: 157 IELLADKFR----------ASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGI 200
I L + A + + ++ LH+A VKLL+ + +
Sbjct: 62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121
Query: 201 ENYNV-------------LHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGR 240
+ L LAA + DVV LL + A+L D G
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL-ENPHQPASLEATDSLGN 173
Score = 56.3 bits (136), Expect = 2e-09
Identities = 15/74 (20%), Positives = 29/74 (39%)
Query: 13 LKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
+ A ++AL + L M L +I N +G T L +A+ EG + ++
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240
Query: 73 YGAKANASITDHQG 86
+ + + H
Sbjct: 241 LQREFSGAAAHHHH 254
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 91.3 bits (228), Expect = 6e-23
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 26/155 (16%)
Query: 8 QTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ + + L AAR D VRIL+ G V+ ++ G T L++A+A G
Sbjct: 2 RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61
Query: 68 LVKYF--YGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVK 125
+V+ GA NA D G T LH+A+ G + +
Sbjct: 62 IVEVLLKNGADVNA---------VDA---------------IGFTPLHLAAFIGHLEIAE 97
Query: 126 YFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
A+ + D +T ++ NG+ + E+L
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 87.1 bits (217), Expect = 2e-21
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
L A+ G + V+ A+ + D TP++LA +GH I+E+L A
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN-GAD 72
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLHLAAMYSREDVVKLL 221
+ + LHLAA ++ ++LL N + ++ ED+ ++L
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Query: 222 L 222
Sbjct: 133 Q 133
Score = 80.5 bits (200), Expect = 5e-19
Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 32/158 (20%)
Query: 43 GTSVDIQNG-EGQTALHIASAEGDEALVKYF--YGAKANASITDHQGIQRDIAAAGTSVL 99
G+ +G + L A+ G + V+ GA NA +D
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNA---------KDE-------- 45
Query: 100 ANCLLMGEGQTALHIASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASII 157
G T L++A+A G +V+ GA NA D TP+HLAA GH I
Sbjct: 46 -------YGLTPLYLATAHGHLEIVEVLLKNGADVNA--VDAIGFTPLHLAAFIGHLEIA 96
Query: 158 ELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL 195
E+L A + + K ++ ED+ ++L
Sbjct: 97 EVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 68.2 bits (168), Expect = 2e-14
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 143 TPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------N 196
+ AA G + +L A + + + L+LA + ++V++LL N
Sbjct: 16 KKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 197 KKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ LHLAA ++ ++LL K G +V
Sbjct: 75 AVDAIGFTPLHLAAFIGHLEIAEVLL-KHGADV 106
Score = 27.7 bits (63), Expect = 2.4
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 195 LNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
+ G + L AA ++D V++L+ G +V
Sbjct: 7 HHHHGSDLGKKLLEAARAGQDDEVRILMA-NGADV 40
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 92.4 bits (230), Expect = 7e-23
Identities = 20/198 (10%), Positives = 46/198 (23%), Gaps = 37/198 (18%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGE---GQTALHIASAEGDEALVKY 71
+ ++ + AA + L + G + L + E + +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMF 60
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG------DEALVK 125
A+ EG T G L K
Sbjct: 61 LINKGADIKSRTK----------------------EGTTLFFPLFQGGGNDITGTTELCK 98
Query: 126 YFYGAKANASITDHQDRTPMHLAAENGHAS------IIELLADKFRASIFERTKENYNVL 179
F A+ + + + N + +L+ + + + K L
Sbjct: 99 IFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158
Query: 180 HLAAMYSREDVVKLLLNK 197
+ +K++ +
Sbjct: 159 EFVKRCQKPIALKMMEDY 176
Score = 79.3 bits (196), Expect = 5e-18
Identities = 20/197 (10%), Positives = 46/197 (23%), Gaps = 40/197 (20%)
Query: 52 EGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTA 111
+ A+ G + + + + +L
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLK---------------SNILY----DV 45
Query: 112 LHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASI------IELLADKFR 165
L + E + + A+ + T + G I ++ +K
Sbjct: 46 LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-G 104
Query: 166 ASIFERTKENYNVLHLAAMYSRED------VVKLLLNKKGI-------ENYNVLHLAAMY 212
A I K V+ D + KL+ ++ G+ L
Sbjct: 105 ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164
Query: 213 SREDVVKLLLNKKGINV 229
+ +K++
Sbjct: 165 QKPIALKMME-DYIKKY 180
Score = 65.5 bits (160), Expect = 5e-13
Identities = 16/128 (12%), Positives = 30/128 (23%), Gaps = 23/128 (17%)
Query: 15 ATTINGDTALHLAARK------RDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEAL 68
+ T G T + ++ +I ++ G + + +
Sbjct: 70 SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDE 129
Query: 69 VKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF- 127
+ K I G+ + G TAL +K
Sbjct: 130 NEMIPLYKL---IFSQSGL--QLLIKDK----------WGLTALEFVKRCQKPIALKMME 174
Query: 128 -YGAKANA 134
Y K N
Sbjct: 175 DYIKKYNL 182
Score = 40.0 bits (94), Expect = 3e-04
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN 50
+++L+ +Q+ QL G TAL R + ++++ DY +++
Sbjct: 135 LYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 28.5 bits (64), Expect = 2.2
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 198 KGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGED 236
+ Y + AAM + L +KG +
Sbjct: 2 NAMSEYRTVSAAAMLGTYEDFLELF-EKGYEDKESVLKS 39
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 95.0 bits (236), Expect = 2e-22
Identities = 29/234 (12%), Positives = 63/234 (26%), Gaps = 22/234 (9%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQN--GEGQTALHIA 60
L E + A LAA L ++ L + + E A A
Sbjct: 146 RLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205
Query: 61 SAE-GDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG 119
+ G ++ + + + + + + + E A +++ +G
Sbjct: 206 AVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG 265
Query: 120 DEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL-------ADKFRASIFERT 172
LV + + +++ + K A
Sbjct: 266 VFDLVTKSECLQGF---------YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP 316
Query: 173 KENYNVLHLAAMYSREDVVKLLLNKKGIENY---NVLHLAAMYSREDVVKLLLN 223
+ +L LA + LLL+ + N ++ R D+ + L
Sbjct: 317 GDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALE 370
Score = 87.3 bits (216), Expect = 1e-19
Identities = 35/247 (14%), Positives = 71/247 (28%), Gaps = 50/247 (20%)
Query: 8 QTAEQLKATTINGDTALHLAAR---KRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEG 64
Q I + +AA LD + +L+ V + E A +A+ G
Sbjct: 80 QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG 139
Query: 65 DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV 124
++ + Q E A +A+ G ++
Sbjct: 140 HLHVLNRLCELAPTEIMAMIQ--------------------AENYHAFRLAAENGHLHVL 179
Query: 125 KYFY--GAKANASITDHQDRTPMHLAA-ENGHASIIELLAD------------------- 162
++ ++ AA GH ++I L D
Sbjct: 180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 239
Query: 163 --KFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKL 220
F A R KE ++ L+ + + V L+ + ++ + +L + E ++
Sbjct: 240 VNPFIARHVNRLKEMHDAFKLS---NPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDD 296
Query: 221 LLNKKGI 227
+ I
Sbjct: 297 IRFLLSI 303
Score = 28.4 bits (63), Expect = 3.2
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 173 KENYNVLHLAAMYSREDVVKLL--LNKKGIENYNVLHLAAMYSRE---DVVKLLLNKKGI 227
++ +L L + + +L +KKGI++ + +AA+ D + LLL
Sbjct: 61 EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLT-SDE 119
Query: 228 NVAALGGEDLT 238
V + E+
Sbjct: 120 IVKVIQAENYQ 130
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 90.6 bits (225), Expect = 2e-21
Identities = 35/216 (16%), Positives = 63/216 (29%), Gaps = 40/216 (18%)
Query: 19 NGDTALHLAA---RKRDLDMVRILVDYGTSVDI-----------QNGEGQTALHIASAEG 64
G T L A D + IL+D GQTALHIA
Sbjct: 45 TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR 104
Query: 65 DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALV 124
+ V+ A+ + G G+ L +A+ +V
Sbjct: 105 CKHYVELLVEKGADVHAQARGRFFQPKDEGG--------YFYFGELPLSLAACTNQPHIV 156
Query: 125 KYF---YGAKANASITDHQDRTPMHLAAENGHAS-------------IIELLADKFRASI 168
Y +A+ D + T +H + ++ A F +
Sbjct: 157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216
Query: 169 FERTKENYNV--LHLAAMYSREDVVKLLLNKKGIEN 202
E N + L +AA + + + ++ ++ +
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252
Score = 68.3 bits (167), Expect = 2e-13
Identities = 31/201 (15%), Positives = 55/201 (27%), Gaps = 60/201 (29%)
Query: 53 GQTALHIASAEGD----EALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEG 108
+ L + G E L+ + K + + + G
Sbjct: 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPS------------------TG 46
Query: 109 QTALHIA---SAEGDEALVKYFYGAKA---------NASITDHQDR--TPMHLAAENGHA 154
+T L A + G + N+ D R T +H+A E
Sbjct: 47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCK 106
Query: 155 SIIELLADKFRASIFERTKENYNV--------------LHLAAMYSREDVVKLLL----- 195
+ELL +K A + + + + L LAA ++ +V L
Sbjct: 107 HYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165
Query: 196 ----NKKGIENYNVLHLAAMY 212
++ VLH
Sbjct: 166 QADLRRQDSRGNTVLHALVAI 186
Score = 67.1 bits (164), Expect = 4e-13
Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 11/132 (8%)
Query: 14 KATTINGDTALHLAARKRDLDMVRILVDYGTS---VDIQNGEGQTALHIASAEGDEALVK 70
G+ L LAA +V L + G + Q+ G T LH A D
Sbjct: 134 GGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTREN 193
Query: 71 YFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF--Y 128
+ K + + ++L N +G + L +A+ G + ++
Sbjct: 194 TKFVTKMYDLLLIK-CAKLFPDTNLEALLNN-----DGLSPLMMAAKTGKIGIFQHIIRR 247
Query: 129 GAKANASITDHQ 140
A+ H
Sbjct: 248 EIADAAAHHHHH 259
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 83.5 bits (206), Expect = 1e-18
Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 32/196 (16%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD-------EALVKY 71
+G+T LH +L++V+ LV +G++ + G++ L A + EAL+ Y
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 189
Query: 72 FYG---------------AKANASITDHQGIQRDIAAAGTSVLANCL---------LMGE 107
Y + +T + +
Sbjct: 190 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 249
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
+ + + + + D T +++AA G+ SI++ L D A
Sbjct: 250 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GAD 308
Query: 168 IFERTKENYNVLHLAA 183
F K + A
Sbjct: 309 PFIANKSGLRPVDFGA 324
Score = 77.0 bits (189), Expect = 3e-16
Identities = 37/251 (14%), Positives = 80/251 (31%), Gaps = 54/251 (21%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQ-NGEGQTALHIAS 61
L+ ++ + + H++ ++ + +++I + G T LH +
Sbjct: 80 TSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT 139
Query: 62 AEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD- 120
+ + LVK+ +N D+ G++ L A +
Sbjct: 140 SIANLELVKHLVKHGSNRLYGDN----------------------MGESCLVKAVKSVNN 177
Query: 121 ------EALVKYFYGAKANASITDHQDRTPMHLAAENGHAS------------IIELLAD 162
EAL+ Y Y + D +RT +H + ++ +
Sbjct: 178 YDSGTFEALLDYLY---PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234
Query: 163 KFRASIFERTKENYNVLHLAAMYSREDVVKLL---------LNKKGIENYNVLHLAAMYS 213
K I T E + + ++ +++ L LN + L++AA
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294
Query: 214 REDVVKLLLNK 224
+V LL+
Sbjct: 295 NISIVDALLDY 305
Score = 69.3 bits (169), Expect = 1e-13
Identities = 28/164 (17%), Positives = 51/164 (31%), Gaps = 31/164 (18%)
Query: 19 NGDTALHLAARKR---DLDMVRILVDY-GTSVDIQNGEGQTALHIA----SAEGDEALVK 70
G++ L A + D L+DY + +++ +T LH G A K
Sbjct: 163 MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 222
Query: 71 YF----------YGAKANASITDHQGIQRDIAAAGTSVLANCLLMG-------------E 107
Y+ + S T+ + + + L
Sbjct: 223 YYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAEN 151
G T L+IA+ G+ ++V A+ I + P+ A
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326
Score = 62.0 bits (150), Expect = 4e-11
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGD 65
NGDT L++AAR ++ +V L+DYG I N G + A +
Sbjct: 282 NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG-AGLE 327
Score = 49.3 bits (117), Expect = 5e-07
Identities = 15/110 (13%), Positives = 31/110 (28%), Gaps = 27/110 (24%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTS----VDIQNGEGQTALHIASAEGDEALVK 70
+ N + D + +D ++ Q+ G T L+IA+ G+ ++V
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD 300
Query: 71 YFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGD 120
A+ I + G + A +
Sbjct: 301 ALLDYGADPFIANK----------------------SGLRPVDFG-AGLE 327
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 77.8 bits (193), Expect = 2e-18
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
G+T LH+A+ G +VK A A+ + D RTP+HLAA NGH +++LL + A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAD 60
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLLLNK 197
+ + K LHLAA +VVKLLL
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 73.5 bits (182), Expect = 8e-17
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 22/108 (20%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
NG T LHLAAR L++V++L++ G V+ ++ G+T LH+A+ G +VK A A+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKY 126
+ D G+T LH+A+ G +VK
Sbjct: 61 VNAKDK----------------------NGRTPLHLAARNGHLEVVKL 86
Score = 59.3 bits (145), Expect = 1e-11
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
A NG T LHLAAR L++V++L++ G V+ ++ G+T LH+A+ G +VK
Sbjct: 30 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Score = 33.1 bits (77), Expect = 0.021
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYG 43
A NG T LHLAAR L++V++L++ G
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 78.2 bits (194), Expect = 3e-18
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
+G T LH A+ G VK A+ + TP+HLAA+NGHA I++LL K A
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-GA 66
Query: 167 SIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIENYNVLH 207
+ R+K+ HLA ++VKLL N + + + H
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 77.0 bits (191), Expect = 6e-18
Identities = 32/130 (24%), Positives = 49/130 (37%), Gaps = 26/130 (20%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF--YGAK 76
+G+T LH AA+ + V+ L+ G V+ ++ +G T LH+A+ G +VK GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASI 136
NA D G T H+A G +VK A+ +
Sbjct: 68 VNARSKD------------------------GNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Query: 137 TDHQDRTPMH 146
H
Sbjct: 104 RSWGSSHHHH 113
Score = 73.2 bits (181), Expect = 2e-16
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 23/134 (17%)
Query: 47 DIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMG 106
+ +G T LH A+ G VK A+ +
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK---------------------- 40
Query: 107 EGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRA 166
+G T LH+A+ G +VK A+ + TP HLA +NGH I++LL K A
Sbjct: 41 DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GA 99
Query: 167 SIFERTKENYNVLH 180
+ R+ + + H
Sbjct: 100 DVNARSWGSSHHHH 113
Score = 70.9 bits (175), Expect = 1e-15
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 134 ASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKL 193
TP+H AA+NGHA ++ L K A + R+K+ LHLAA ++VKL
Sbjct: 2 HMWGSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 194 LL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
LL N + + HLA ++VKLL KG +V
Sbjct: 61 LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD-AKGADV 101
Score = 61.2 bits (150), Expect = 3e-12
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF-- 72
A + +G+T LHLAA+ ++V++L+ G V+ ++ +G T H+A G +VK
Sbjct: 37 ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 73 YGAKANA 79
GA NA
Sbjct: 97 KGADVNA 103
Score = 47.8 bits (115), Expect = 2e-07
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALH 58
A + +G+T HLA + ++V++L G V+ ++ H
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 74.5 bits (184), Expect = 6e-17
Identities = 25/134 (18%), Positives = 45/134 (33%), Gaps = 25/134 (18%)
Query: 27 AARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQG 86
+ LV G+ + + L A+ G + V+ A+ + D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-- 55
Query: 87 IQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMH 146
G T LH+A+ G +VK A A+ D +T
Sbjct: 56 --------------------NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95
Query: 147 LAAENGHASIIELL 160
++ +NG+ + E+L
Sbjct: 96 ISIDNGNEDLAEIL 109
Score = 70.7 bits (174), Expect = 1e-15
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRAS 167
L A+ G + V+ A+ + D TP+HLAA NGH +++LL + A
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA-GAD 82
Query: 168 IFERTKENYNVLHLAAMYSREDVVKLL 194
+ + K ++ ED+ ++L
Sbjct: 83 VXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 66.8 bits (164), Expect = 3e-14
Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 14/115 (12%)
Query: 115 ASAEGDEALVKYF--YGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERT 172
S+ G+ + + AA G + +L A + +
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS-----DLGKKLLEAARAGQDDEVRILMAN-GADVAAKD 54
Query: 173 KENYNVLHLAAMYSREDVVKLLLNK------KGIENYNVLHLAAMYSREDVVKLL 221
K LHLAA +VVKLLL + ++ ED+ ++L
Sbjct: 55 KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 65.7 bits (161), Expect = 8e-14
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 22/109 (20%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAKAN 78
+ L AAR D VRIL+ G V ++ G T LH+A+ G +VK A A+
Sbjct: 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 79 ASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYF 127
D G+TA I+ G+E L +
Sbjct: 83 VXAQDK----------------------FGKTAFDISIDNGNEDLAEIL 109
Score = 56.0 bits (136), Expect = 2e-10
Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 11/97 (11%)
Query: 148 AAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSREDVVKLLL------NKKGIE 201
+ + H L + + + + L AA ++D V++L+ K
Sbjct: 1 GSSHHHHHHSSGLVPR-GSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 202 NYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLT 238
LHLAA +VVKLLL + G +V A T
Sbjct: 57 GSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKT 92
Score = 50.3 bits (121), Expect = 2e-08
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 15 ATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYF 72
A NG T LHLAAR L++V++L++ G V Q+ G+TA I+ G+E L +
Sbjct: 52 AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 4e-13
Identities = 48/226 (21%), Positives = 73/226 (32%), Gaps = 52/226 (23%)
Query: 37 RILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY-FYGAKANASITDH-Q--------- 85
RI +Y + +G+ E +E Y F K S T Q
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 86 ---------GIQRDIAAAGTSVLANCLLMGEGQTAL-HIASAEGDEALVK--YFYG-AKA 132
I D AG S+ GE AL +A E+LV+ ++ G
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSL-------GE-YAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 133 NASITDHQDRTPMHLAAENGHASIIELLADKFR---ASIFERTKE-----NYN------V 178
A D R+ + A N + + + +RT NYN V
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 179 L--HLAAMYSREDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLL 222
L A+ D V +LN ++ +++ L S E+V L
Sbjct: 1855 AAGDLRAL----DTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 51.6 bits (123), Expect = 2e-07
Identities = 42/244 (17%), Positives = 78/244 (31%), Gaps = 85/244 (34%)
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKF----- 164
TA +++ L + F N + + + AA++ + EL+ KF
Sbjct: 24 TASFFIASQ----LQEQF-----NKILPEPTEG----FAADDEPTTPAELVG-KFLGYVS 69
Query: 165 ---------------RASI--FERT--KENYNVLH-LAAMYSREDVVKLLLNKKGIENYN 204
+ FE + N ++ H LAA +E+ L+ K+ I+NY
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGN-DI-HALAAKLLQENDTTLVKTKELIKNY- 126
Query: 205 VLHLAAMYSREDVVK----LLL---NKKGINVAAL-GGEDLTGRPDLTVGPVQAY----- 251
A + ++ K L + + A+ GG+ G Y
Sbjct: 127 --ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ----------GNTDDYFEELR 174
Query: 252 -LYQVYLISKQQTAVHLVCSRQTGTATSILRALLSTAGREIRMTVDGTLILYYRGKDSKA 310
LYQ Y V + + L L+ T + ++ +G +
Sbjct: 175 DLYQTY-----HVLVGDLIKF----SAETLSELIRTTLDAEK--------VFTQGLNILE 217
Query: 311 QIEE 314
+E
Sbjct: 218 WLEN 221
Score = 49.3 bits (117), Expect = 1e-06
Identities = 59/318 (18%), Positives = 94/318 (29%), Gaps = 102/318 (32%)
Query: 4 LLSTQT---AEQLKAT----------TINGD----TALHLAARKRDLDMVRILVDYGTSV 46
L+ T + A QL+ D T L + L V LV+
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGYVSSLVE----- 73
Query: 47 DIQNGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGI--QRDI-AAAGTSVLANCL 103
+ G+ L + F DI A A
Sbjct: 74 PSKVGQFDQVL--------NLCLTEF-----------ENCYLEGNDIHALAAK------- 107
Query: 104 LMGEGQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHL-AAENGHASIIELLAD 162
L+ E T L + L+K + A+ A + A G+A ++
Sbjct: 108 LLQENDTTL-----VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV----- 157
Query: 163 KFRASIF------ERT-KENYNVLHLAAMYSR-EDVVKLLLNKKGIENYNVL-HLAAMYS 213
+IF + +E L +Y +V L+ L L +
Sbjct: 158 ----AIFGGQGNTDDYFEE------LRDLYQTYHVLVGDLIKFSA----ETLSELIR--T 201
Query: 214 REDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYLYQVY----LISKQQTAVHLVC 269
D K+ +G+N+ L P T P + YL + LI Q A ++V
Sbjct: 202 TLDAEKVF--TQGLNILEW----LEN-PSNT--PDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 270 SRQTGTATSILRALLSTA 287
++ G LR+ L A
Sbjct: 253 AKLLGFTPGELRSYLKGA 270
Score = 45.4 bits (107), Expect = 2e-05
Identities = 49/243 (20%), Positives = 77/243 (31%), Gaps = 81/243 (33%)
Query: 85 QGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEG----DEALVKYF---YGAKANASIT 137
QG Q G MG L+ S + A +F YG SI
Sbjct: 1624 QGSQE----QG---------MGM---DLYKTSKAAQDVWNRAD-NHFKDTYG----FSIL 1662
Query: 138 DHQDRTP----MHLAAENGH-------ASIIELLADKFRAS--IFERTKENYN------- 177
D P +H E G A I E + D + IF+ E+
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 178 --VLHL-----AAMYSREDVVKLLLNKKGIENYNVL---H-------LAAM---YSREDV 217
+L A+ E L KG+ + H LA++ S E +
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 218 VKLLLNKKGINVAALGGEDLTGRPD---LTVGPVQAYLYQVYLISKQQTAVHLVC---SR 271
V+ ++ +G+ + D GR + + + P + S Q A+ V +
Sbjct: 1783 VE-VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV------AASFSQEALQYVVERVGK 1835
Query: 272 QTG 274
+TG
Sbjct: 1836 RTG 1838
Score = 36.6 bits (84), Expect = 0.010
Identities = 60/316 (18%), Positives = 98/316 (31%), Gaps = 89/316 (28%)
Query: 2 WELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIAS 61
WE + + G + A L IL D ++N EG + + S
Sbjct: 289 WESFFVSVRKAITVLFFIG-VRCYEAYPNTSLP-PSILEDS-----LENNEGVPS-PMLS 340
Query: 62 AEG--DEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIA-SAE 118
E + Y K N+ + + ++ I+ L N G L ++ +
Sbjct: 341 ISNLTQEQVQDYV--NKTNSHLPAGKQVE--IS------LVN------GAKNLVVSGPPQ 384
Query: 119 GDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNV 178
L AKA + + D Q R P F ER + N
Sbjct: 385 SLYGLNLTLRKAKAPSGL-D-QSRIP-------------------FS----ERKLKFSNR 419
Query: 179 -L------HLAAMYSREDVVKLLLNKKGIENYNVLHLA-AMYSREDVVKLLLNKKGINVA 230
L H + D++ L K + +N + +Y D G ++
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVS-FNAKDIQIPVYDTFD---------GSDLR 469
Query: 231 ALGGEDLTGR--PDLTVGPV--QAYLYQVYLISKQQTAVHLVCSRQTGT-ATSILRALLS 285
L G ++ R + PV + + Q A H++ G S L L
Sbjct: 470 VLSGS-ISERIVDCIIRLPVKWET--------TTQFKATHILD---FGPGGASGLGVLTH 517
Query: 286 --TAGREIRMTVDGTL 299
G +R+ V GTL
Sbjct: 518 RNKDGTGVRVIVAGTL 533
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 61.9 bits (150), Expect = 3e-11
Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 19/111 (17%)
Query: 50 NGEGQTALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQ 109
+ +TALH+A D + N+ D Q G+G
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-------------------TGKGS 206
Query: 110 TALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
TALH + +K KA+ I + TP+ +A H ELL
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257
Score = 60.0 bits (145), Expect = 1e-10
Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 25/118 (21%)
Query: 19 NGDTALHLAARKRD---LDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
+TALHLA R D L +V LV ++D Q G+G TALH + +K
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG 227
Query: 76 KANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
KA+ I + G+T L IA E + A +
Sbjct: 228 KASIEIANE----------------------SGETPLDIAKRLKHEHCEELLTQALSG 263
Score = 59.2 bits (143), Expect = 3e-10
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 1 IWELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIA 60
I + L Q + L T G TALH + + +++L+ S++I N G+T L IA
Sbjct: 187 IVDFL-VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245
Query: 61 SAEGDEALVKYFYGAKANASITDHQGIQRD 90
E + A + H ++ +
Sbjct: 246 KRLKHEHCEELLTQALSGRF-NSHVHVEYE 274
Score = 41.1 bits (96), Expect = 2e-04
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 133 NASITDHQDRTPMHLAAENG---HASIIELLADKFRASIFERTKENYNVLHLAAMYSRED 189
+ D T +HLA + I++ L ++ ++T + LH + +
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHYCCLTDNAE 219
Query: 190 VVKLLL-NKKGIENYNV-----LHLAAMYSREDVVKLLLN 223
+KLLL K IE N L +A E +LL
Sbjct: 220 CLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 58.5 bits (141), Expect = 5e-10
Identities = 25/149 (16%), Positives = 41/149 (27%), Gaps = 39/149 (26%)
Query: 25 HLAARKRDLDMVRILVDYGTSVDIQNGE------GQTALHIASAEGD-------EALVKY 71
A RDL V G + LH+A + + +++
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN 215
Query: 72 FYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAK 131
G +A +G TALH A+ +K +
Sbjct: 216 --GGHLDA------------------------KAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 132 ANASITDHQDRTPMHLAAENGHASIIELL 160
A + T + +A + H ELL
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELL 278
Score = 56.5 bits (136), Expect = 3e-09
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 25/117 (21%)
Query: 20 GDTALHLAARKRD---LDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGAK 76
+ LHLA + + L +V ++ G +D + +G TALH A+ +K +
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 249
Query: 77 ANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKAN 133
A + G+TAL IA + + + A+A
Sbjct: 250 ALVGTVN----------------------EAGETALDIARKKHHKECEELLEQAQAG 284
Score = 54.2 bits (130), Expect = 1e-08
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 3 ELLSTQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASA 62
+ + Q L A +G+TALH AA D +++L+ V N G+TAL IA
Sbjct: 210 DFI-IQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268
Query: 63 EGDEALVKYFYGAKAN 78
+ + + A+A
Sbjct: 269 KHHKECEELLEQAQAG 284
Score = 37.3 bits (86), Expect = 0.004
Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 113 HIASAEGDEALVKYFYGAKANASITDHQ----DRTPMHLAAENGHAS---IIELLADKFR 165
I + + L + G + + +HLA + + + +++ + +
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNG 216
Query: 166 ASIFERTKENYNVLHLAAMYSREDVVKLLLNKK---GIENYN---VLHLAAMYSREDVVK 219
+ + + LH AA+Y++ D +KLLL + G N L +A ++ +
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 276
Query: 220 LL 221
LL
Sbjct: 277 LL 278
Score = 30.3 bits (68), Expect = 0.74
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 179 LHLAAMYSRED---VVKLLL------NKKGIENYNVLHLAAMYSREDVVKLLLNKKGINV 229
LHLA + + +V ++ + K + LH AA+Y++ D +KLLL K V
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALV 252
Query: 230 AALGGEDLT 238
+ T
Sbjct: 253 GTVNEAGET 261
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 57.2 bits (138), Expect = 2e-09
Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 19 NGDTALHLAARKRD---LDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKYFYGA 75
+ LHLA + + L +V ++ G +D + +G TALH A+ +K
Sbjct: 170 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 229
Query: 76 KANASITDHQG-----IQRDIAAAGTSVLANCLLMGEGQTALHI 114
+A + G I R L G LH+
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHV 273
Score = 51.4 bits (123), Expect = 2e-07
Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 39/150 (26%)
Query: 24 LHLAARKRDLDMVRIL----VDYGTSVDIQNGE--GQTALHIASAEGD-------EALVK 70
L A RDL V D+G + + + + LH+A + + +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 71 YFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGA 130
+ G TALH A+ +K
Sbjct: 196 N----GGHLDAKAADG----------------------NTALHYAALYNQPDCLKLLLKG 229
Query: 131 KANASITDHQDRTPMHLAAENGHASIIELL 160
+A + T + +A + H ELL
Sbjct: 230 RALVGTVNEAGETALDIARKKHHKECEELL 259
Score = 45.3 bits (107), Expect = 1e-05
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 12 QLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEALVKY 71
L A +G+TALH AA D +++L+ V N G+TAL IA + + +
Sbjct: 199 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEEL 258
Query: 72 FYGAKAN 78
A+A
Sbjct: 259 LEQAQAG 265
Score = 39.9 bits (93), Expect = 8e-04
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 112 LHIASAEGDEALVKYFY--GAKANASI----TDHQDRTPMHLAAENGHAS---IIELLAD 162
L A D V + G + + +HLA + + + +++ +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII- 194
Query: 163 KFRASIFERTKENYNVLHLAAMYSREDVVKLLLNKK 198
+ + + + LH AA+Y++ D +KLLL +
Sbjct: 195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR 230
Score = 30.6 bits (69), Expect = 0.63
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 155 SIIELLA--DKFRASIFERTKEN--YNVLHLAAMYSRED---VVKLLL------NKKGIE 201
S++E A F + + VLHLA + + +V ++ + K +
Sbjct: 147 SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD 206
Query: 202 NYNVLHLAAMYSREDVVKLLLNKK 225
LH AA+Y++ D +KLLL +
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGR 230
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 56.7 bits (136), Expect = 2e-09
Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 24/157 (15%)
Query: 6 STQTAEQLKATTINGDTALHLAARKRDLDMVRILVDYGTSVDIQNG--EGQTALHIASAE 63
+ + + G + L + + +G V+ NG + T L A+A
Sbjct: 186 KPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA 245
Query: 64 GDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTALHIASAEGDEAL 123
++ AN + D G+ LH A+ G L
Sbjct: 246 NSLLACEFLLQNGANVNQADS----------------------AGRGPLHHATILGHTGL 283
Query: 124 VKYFYGAKANASITDHQDRTPMHLAAENGHASIIELL 160
F A+ D + R P+ +A E +A I+ LL
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320
Score = 44.0 bits (103), Expect = 3e-05
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 7/100 (7%)
Query: 129 GAKANASITDHQDRTPMHLAAENGHASIIELLADKFRASIFERTKENYNVLHLAAMYSRE 188
GA N + TP+ A E L + A++ + LH A +
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLL-QNGANVNQADSAGRGPLHHATILGHT 281
Query: 189 DVVKLLLNKK---GIENYN---VLHLAAMYSREDVVKLLL 222
+ L L + G + L +A + D+V LL
Sbjct: 282 GLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 1e-07
Identities = 38/312 (12%), Positives = 91/312 (29%), Gaps = 67/312 (21%)
Query: 1 IWELLS--TQTAEQLKATTINGD-----TALHLAARKRDLDMVRILVDYGTSVDIQNGEG 53
W LLS + ++ + + + + R+ + Y D +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM----YIEQRDRLYNDN 123
Query: 54 Q--TALHIASAEGDEALVKYFYGAKANASITDHQGIQRDIAAAGTSVLANCLLMGEGQTA 111
Q +++ + L + + ++ G+ +G + +A + +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GV----LGSGKTWVALDVCLSYKVQC 178
Query: 112 --------LHIASAEGDEALVK-----YFYGAKANASITDHQDRTPMHLAAENGHASIIE 158
L++ + E +++ + S +DH + I
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR----------IH 228
Query: 159 LLADKFRASIFERTKEN--------YNVLHLAA--------MYSREDVVKLLLNKKGIEN 202
+ + R + + EN N A + +R V L+ +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 203 YNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTVGPVQAYL---------Y 253
++ H + + ++V LLL L E LT P + + + +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNW 347
Query: 254 QVYLISKQQTAV 265
+ K T +
Sbjct: 348 KHVNCDKLTTII 359
Score = 36.4 bits (83), Expect = 0.014
Identities = 23/184 (12%), Positives = 57/184 (30%), Gaps = 57/184 (30%)
Query: 157 IELLADKF--RASIFERTKENYNVLHLAAMYSREDVVKLL-LNKKGIENYNVL------- 206
+ ++ +K + + ++ KE+ + + + + L++ +++YN+
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 207 ----------------HLAAMYSREDVV---KLLLN-----KKGINVAALGGEDLTGRPD 242
HL + E + + L+ +K + + +
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 243 LTVGPVQAYLYQVYLISK---------------QQTAVHLVCSRQTGTATSILRALLSTA 287
L Q Y+ Y+ + +L+CS+ T +LR L
Sbjct: 524 LQ----QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY----TDLLRIALMAE 575
Query: 288 GREI 291
I
Sbjct: 576 DEAI 579
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 32.8 bits (74), Expect = 0.14
Identities = 5/49 (10%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 19 NGDTALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALHIASAEGDEA 67
+ L + +++L + + S + T ++ + G+++
Sbjct: 481 HSFGPLDYESLQQELALKETVW-KKVSPESNEDISTTVVYRMESLGEKS 528
Score = 30.9 bits (69), Expect = 0.56
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 108 GQTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHAS 155
L S + + AL + + K + + T ++ G S
Sbjct: 482 SFGPLDYESLQQELALKETVW-KKVSPESNEDISTTVVYRMESLGEKS 528
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 2.4
Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 24/142 (16%)
Query: 28 ARKRDLDMVRILVDYGTSVDIQN------GEG--------QTALHIASAEGDEALVKYFY 73
A K + + I+ T+ D G+G +++ AS + K
Sbjct: 1194 ALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKYASPNLNMKYRK-RQ 1252
Query: 74 GAKANASITDHQGIQRD-IAAAGTSVLANCLLMGEGQTALHIASAEGDEALVKYFYGAKA 132
A I D + + + + + + + + E A+
Sbjct: 1253 LVTREAQIKDWVENELEALKLEAEEIPSE----DQNEFL-LERTREIHNEAESQLRAAQQ 1307
Query: 133 NASITDHQDR---TPMHLAAEN 151
++ P+ A
Sbjct: 1308 QWGNDFYKRDPRIAPLRGALAT 1329
>2a6h_A DNA-directed RNA polymerase alpha chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: d.74.3.1
d.181.1.1 PDB: 1smy_A* 1zyr_A* 1iw7_A* 2a69_A* 2a6e_A
2a68_A* 2be5_A* 2cw0_A 2o5i_A 2o5j_A* 2ppb_A* 3aoh_A*
3aoi_A* 3dxj_A* 3eql_A* 1i6v_A* 1ynj_A* 1l9z_A 1l9u_A*
1ynn_A* ...
Length = 315
Score = 28.6 bits (65), Expect = 2.6
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 187 REDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
+EDVV+++LN K L + + V LLL +G
Sbjct: 72 KEDVVEIILNLKE------LVVRFLNPSLQTVTLLLKAEG 105
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda
repressor, protein oligomerization, DNA-looping; 2.91A
{Enterobacteria phage lambda} SCOP: b.87.1.1
Length = 109
Score = 27.3 bits (61), Expect = 3.1
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 11/75 (14%)
Query: 2 WELLSTQTAEQLKATTINGD---TALHLAARKRDLDMVRILVDYGTSVDIQNGEGQTALH 58
+ + + ++ + G+ D ++ LVD ++ G+
Sbjct: 2 SHMTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLI--LVD--PEQAVEPGD----FC 53
Query: 59 IASAEGDEALVKYFY 73
IA GDE K
Sbjct: 54 IARLGGDEFTFKKLI 68
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 27.1 bits (60), Expect = 4.2
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 26/111 (23%)
Query: 148 AAENGHASIIELLADKFRASIFERTKENYNVLH------------------LAAMYSRED 189
+ + E+ +++ + K+ + V+H LA +
Sbjct: 4 GSSGKFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETK 63
Query: 190 VVKLLLNKKGIENYNVLHLAAM--YSREDVVKLLLNKKGINVAALGGEDLT 238
VK ++N IE+Y+ L + Y + I + GG +L
Sbjct: 64 FVKAIVN-SCIEHYHDNCLPTIFVYKNGQIEGKF-----IGIIECGGINLK 108
>3lu0_A DNA-directed RNA polymerase subunit alpha; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_A
Length = 329
Score = 27.8 bits (63), Expect = 4.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 187 REDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
+ED++++LLN KG+ + + +D V L LNK G
Sbjct: 75 QEDILEILLNLKGL----AVRVQG----KDEVILTLNKSG 106
>1bdf_A RNA polymerase alpha subunit; nucleotidyltransferase, assemble;
2.50A {Escherichia coli} SCOP: d.74.3.1 d.181.1.1
Length = 235
Score = 27.4 bits (62), Expect = 4.7
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 8/40 (20%)
Query: 187 REDVVKLLLNKKGIENYNVLHLAAMYSREDVVKLLLNKKG 226
+ED++++LLN KG+ + +++V+ L LNK G
Sbjct: 75 QEDILEILLNLKGLA-------VRVQGKDEVI-LTLNKSG 106
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase;
2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A
3ih9_A 3iha_A* 3ihb_A 2dfw_A
Length = 456
Score = 27.4 bits (60), Expect = 6.4
Identities = 6/55 (10%), Positives = 10/55 (18%)
Query: 109 QTALHIASAEGDEALVKYFYGAKANASITDHQDRTPMHLAAENGHASIIELLADK 163
Q + AE + P A A++
Sbjct: 332 QGVIRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGG 386
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 27.2 bits (61), Expect = 8.3
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 233 GGEDLTGRPDLTVGPVQAYL 252
GG ++T P+ T V+
Sbjct: 72 GGREVTLIPEATPSTVRMVT 91
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 27.3 bits (61), Expect = 8.7
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 194 LLNKKGIENYNVLHLAAMYSREDVVKLLLNKKGINVAALGGEDLTGRPDLTV 245
+L KG + N+ +Y E ++ + G E + D TV
Sbjct: 58 VLQAKGNQGDNI-----IYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTV 104
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A
{Enterobacteria phage lambda}
Length = 236
Score = 26.9 bits (59), Expect = 9.6
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 2 WELLSTQTAEQLKATTINGDTALHLAARKRDL-DMVRILVDYGTSVDIQNGEGQTALHIA 60
W + + ++ + G++ K D + ILVD ++ G+ IA
Sbjct: 129 WVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVD--PEQAVEPGD----FCIA 182
Query: 61 SAEGDEALVKYFY 73
GDE K
Sbjct: 183 RLGGDEFTFKKLI 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.363
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,637,805
Number of extensions: 285771
Number of successful extensions: 2181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 923
Number of HSP's successfully gapped: 329
Length of query: 315
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 222
Effective length of database: 4,105,140
Effective search space: 911341080
Effective search space used: 911341080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.4 bits)