RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12894
(124 letters)
>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase,
innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila
melanogaster}
Length = 408
Score = 113 bits (285), Expect = 2e-31
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 18 DFNVDDLTTINSSMNHCNCACGQVERNQRIVGGNVTKLHEFPWIAAL----TKKGKFYCG 73
N+ + + S N CG +QR+ G KL PW+A L + +F CG
Sbjct: 91 SANIQHNSKVMSLFKDENFDCGNF-LSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCG 149
Query: 74 ATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESVP 114
+I++R++LTAAHC+ G+ ++ LGEH ++ +
Sbjct: 150 GAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDCRQ 190
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 109 bits (273), Expect = 1e-29
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 29 SSMNHCNCACGQVERN--QRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAA 86
S+ C CG R +I GG K +FPW + G L+ VLTAA
Sbjct: 142 KSLPVCEPVCGLSARTTGGQIYGGQKAKPGDFPWQVLI--LGGTTAAGALLYDNWVLTAA 199
Query: 87 HCIEG--VNPKEIKVTLGEHDRLSKNESVP----VIIH 118
H + + + + +G RLS + + V IH
Sbjct: 200 HAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIH 237
>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating
factor-I, PPAF-I, serine proteas hydrolase; HET: NAG;
1.70A {Holotrichia diomphalia}
Length = 278
Score = 104 bits (262), Expect = 8e-29
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 28 NSSMNHCNCACGQVERNQRIVGGNVTKLHEFPWIAALTKKG-----KFYCGATLIAKRHV 82
N CG +I+ G+ T EFPW A + K +F CG +LI R++
Sbjct: 4 NRRPELLPNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYI 63
Query: 83 LTAAHCIEG----VNPKEIKVTLGEHDRLSKNE 111
+TAAHC+ G V KV LGE + + +
Sbjct: 64 VTAAHCVAGRVLRVVGALNKVRLGEWNTATDPD 96
>2bdy_A Thrombin; thrombin, complex structure, hydrolase,
hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo
sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E*
1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A*
1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A*
1zgi_A* 1zgv_A* 1zrb_A* ...
Length = 289
Score = 104 bits (262), Expect = 1e-28
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 28 NSSMNHCNCACGQVERNQRIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTA 85
S + + + RIV G+ ++ PW L +K + CGA+LI+ R VLTA
Sbjct: 12 KSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTA 71
Query: 86 AHCI------EGVNPKEIKVTLGEHDRLSKNESVP-------VIIH--FSVSNT 124
AHC+ + ++ V +G+H R ++ + IH ++
Sbjct: 72 AHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWREN 125
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 104 bits (262), Expect = 5e-28
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 28 NSSMNHCNCACGQVERNQRIVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTA 85
S + + + RIV G+ ++ PW L +K + CGA+LI+ R VLTA
Sbjct: 147 KSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTA 206
Query: 86 AHCIE------GVNPKEIKVTLGEHDRLSKNESVP-------VIIH--FSVSNT 124
AHC+ ++ V +G+H R ++ + IH ++
Sbjct: 207 AHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWREN 260
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes
scabiei type hominis}
Length = 235
Score = 99 bits (250), Expect = 2e-27
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
I+GG + + + PW + K +CG +++ V+TAA C++G P +I + G R
Sbjct: 1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYR 60
Query: 107 LSKNESVPV--IIH 118
+K SV I
Sbjct: 61 TTKGTSVMAKKIYI 74
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 101 bits (253), Expect = 7e-27
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 22/106 (20%)
Query: 35 NCACGQVERNQ---RIVGG-NVTKLHEFPWIAALTKKG--------KFYCGATLIAKRHV 82
CG +I G N + EFPW+ A+ K + CG +LIA V
Sbjct: 115 PSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVV 174
Query: 83 LTAAHCIEGV--NPKEIKVTLGEHDRLSKNESVP--------VIIH 118
LT AHC+ N IK+ GE D L++ E +P VIIH
Sbjct: 175 LTGAHCVNSYQSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIH 220
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG;
0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A
1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A*
1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E
1pqa_A*
Length = 224
Score = 98.0 bits (245), Expect = 8e-27
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
IVGG +FP+I ++++ G +CG +L+ VLTAAHC+ G ++ G R
Sbjct: 1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSR 60
Query: 107 LSKNESVPV---IIH 118
S + + +H
Sbjct: 61 TSGGITSSLSSVRVH 75
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor,
disease mutation glycoprotein, hydrolase, zymogen,
secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP:
b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A*
1hne_E 2rg3_A* 1b0f_A*
Length = 218
Score = 97.6 bits (244), Expect = 1e-26
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
IVGG + H +P++ +L +G +CGATLIA V++AAHC+ VN + ++V LG H+
Sbjct: 1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHN- 59
Query: 107 LSKNE------SVPVIIH 118
LS+ E +V I
Sbjct: 60 LSRREPTRQVFAVQRIFE 77
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor,
hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB:
1ybw_A 2r0k_A
Length = 283
Score = 98.9 bits (247), Expect = 1e-26
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 15/117 (12%)
Query: 22 DDLTTINSSMNHCNCACGQ-----VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATL 76
D L T+ + ACG+ RI+GG+ + PW+AA+ G +C +L
Sbjct: 6 DLLATLPEPASPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAGSL 64
Query: 77 IAKRHVLTAAHCIEG-VNPKEIKVTLGEHDRLSKNESVP------VIIH--FSVSNT 124
+ V++AAHC + V LG+H + I + +SV N
Sbjct: 65 VHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYTLYSVFNP 121
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation,
pyroglutamation, eight-membered R peptide bond,
hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Length = 238
Score = 97.7 bits (244), Expect = 2e-26
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 47 IVGGNVTKLHEFPWIAALTKK--GKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH 104
IVGG + +EFPW ++ +K +CG ++I R V+ AAHC++G P + + +GEH
Sbjct: 1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEH 60
Query: 105 DRLSKNESVP------VIIH 118
D + + + ++
Sbjct: 61 DSSAASTVRQTHDVDSIFVN 80
>1z8g_A Serine protease hepsin; serine protease hepsin, protease,
hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A
{Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A
1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Length = 372
Score = 100 bits (250), Expect = 2e-26
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 35 NCACGQ-VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEG-- 91
CG+ RIVGG T L +PW +L G CG +L++ VLTAAHC
Sbjct: 105 CQDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERN 164
Query: 92 VNPKEIKVTLGEHDRLSKNE-SVPV---IIH 118
+V G + S + + V + H
Sbjct: 165 RVLSRWRVFAGAVAQASPHGLQLGVQAVVYH 195
>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S
3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*
Length = 235
Score = 97.3 bits (243), Expect = 2e-26
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
+VGG K +FPW L K +CG +++ ++ ++TAAHC+E +I V GEH+
Sbjct: 1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVE--TGVKITVVAGEHNI 58
Query: 107 LSKNESVP------VIIH 118
+ +I H
Sbjct: 59 EETEHTEQKRNVIRIIPH 76
>2jde_A Urokinase-type plasminogen activator; plasminogen activation,
EGF-like domain, blood coagulation, inhibitor complex,
UPA, kringle, zymogen; 2.2A {Homo sapiens} PDB: 2vnt_A*
Length = 276
Score = 97.8 bits (244), Expect = 3e-26
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 14/99 (14%)
Query: 34 CNCACGQ--VERNQRIVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAA 86
CGQ + +I+GG T + PW AA+ ++ + + CG +L++ V++A
Sbjct: 9 LKFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISAT 68
Query: 87 HCIEG-VNPKEIKVTLGEHDRLSKNESVP------VIIH 118
HC ++ V LG S + +I+H
Sbjct: 69 HCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVENLILH 107
>1md8_A C1R complement serine protease; innate immunity, activation,
substrate specificity, hydrolase; 2.80A {Homo sapiens}
SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
Length = 329
Score = 98.6 bits (246), Expect = 4e-26
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 34 CNCACGQ----VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCI 89
C CG+ VE+ QRI+GG K+ FPW G G L+ R +LTAAH +
Sbjct: 73 CLPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTL 130
Query: 90 EG-----VNPKEIKVTLGEHDRLSKNESVP-----VIIH 118
+ + V LG + + V +H
Sbjct: 131 YPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVH 169
>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
...
Length = 254
Score = 96.9 bits (242), Expect = 4e-26
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 105
IVGG V E PW L G CG TLI V++AAHC + + N + + LGEHD
Sbjct: 1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHD 60
Query: 106 RLSKNESVP------VIIH 118
+ VII
Sbjct: 61 LSEHDGDEQSRRVAQVIIP 79
>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase;
1.90A {Homo sapiens} PDB: 1ekb_B
Length = 235
Score = 96.1 bits (240), Expect = 6e-26
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEG--VNPKEIKVTLGEH 104
IVGG+ K +PW+ L + CGA+L++ +++AAHC+ G + P + LG H
Sbjct: 1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLH 60
Query: 105 DRLSKNESVP-------VIIH 118
+ + ++I+
Sbjct: 61 MKSNLTSPQTVPRLIDEIVIN 81
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin
binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2
PDB: 1ae5_A* 1fy3_A* 1fy1_A*
Length = 225
Score = 94.9 bits (237), Expect = 1e-25
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
IVGG + +FP++A++ +G+ +CG LI R V+TAA C + NP V LG +D
Sbjct: 1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYD- 59
Query: 107 LSKNES 112
L + E
Sbjct: 60 LRRRER 65
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 97.2 bits (242), Expect = 3e-25
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 34 CNCACGQ----VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCI 89
C CG+ VE+ Q+I+GG K+ FPW G G L+ R +LTAAH +
Sbjct: 141 CLPVCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTL 198
Query: 90 EG-----VNPKEIKVTLGEHDRLSKNESVP-----VIIH 118
+ + V LG + + V +H
Sbjct: 199 YPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVH 237
>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR
sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo
sapiens} SCOP: b.47.1.2 g.18.1.1
Length = 333
Score = 96.4 bits (240), Expect = 3e-25
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 16/101 (15%)
Query: 29 SSMNHCNCACGQ----VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLT 84
+ C CG E QRI+GG+ + FPW + G LI + VLT
Sbjct: 61 PELPKCVPVCGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLT 117
Query: 85 AAHCIEGVNPKEIKVTLGEHDRLSKNESVP-------VIIH 118
AAH +EG +E + +G + + V IH
Sbjct: 118 AAHVVEG--NREPTMYVGSTSVQTSRLAKSKMLTPEHVFIH 156
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen,
secreted, protease, hydrolase, polymorphism,
glycoprotein, gamma-carboxyglutamic acid; HET: BI7;
1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A*
2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D
2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B*
1lqd_B* 1nfu_A* 1nfw_A* ...
Length = 241
Score = 93.8 bits (234), Expect = 5e-25
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 47 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 105
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G+ +
Sbjct: 1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLY--QAKRFKVRVGDRN 58
Query: 106 RLSKNESVP------VIIH 118
+ VI H
Sbjct: 59 TEQEEGGEAVHEVEVVIKH 77
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro
evolution, specific inhibitor, allostery, hydrolase;
1.28A {Homo sapiens}
Length = 242
Score = 93.5 bits (233), Expect = 8e-25
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEG--VNPKEIKVTLGEH 104
I GG K +FPW + G L+ VLTAAH + + + + +G
Sbjct: 1 IYGGQKAKPGDFPWQVLI--LGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTL 58
Query: 105 DRLSKNESVP----VIIH 118
RLS + + V IH
Sbjct: 59 KRLSPHYTQAWSEAVFIH 76
>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood
coagulation, BLOO clotting, convertion of fibrinogen to
fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB:
1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H*
1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H*
1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...
Length = 259
Score = 92.4 bits (230), Expect = 3e-24
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 47 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCIEG------VNPKEIK 98
IV G+ ++ PW L +K + CGA+LI+ R VLTAAHC+ ++
Sbjct: 1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLL 60
Query: 99 VTLGEHDRLSKNESVP-------VIIH--FSVSNT 124
V +G+H R ++ + IH ++
Sbjct: 61 VRIGKHSRTRYERNIEKISMLEKIYIHPRYNWREN 95
>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease
(elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2
Length = 241
Score = 91.5 bits (228), Expect = 4e-24
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 47 IVGGNVTKLHEFPWIAALTKKG---KFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 103
++GG EFPW + ++ CGA+L++ L+A+HC++GV P I+V G
Sbjct: 1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60
Query: 104 HDRLSKNESVP-----VIIH 118
+ + + +H
Sbjct: 61 WQQSDTSGTQTANVDSYTMH 80
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen;
HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A
3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A
Length = 224
Score = 90.7 bits (226), Expect = 5e-24
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 105
+VGG EFP++ L CG L A+ VLTAAHC+ G N I T G D
Sbjct: 1 VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 106 RLSKNE-SVPV---IIH 118
S + V +
Sbjct: 57 LQSSSAVKVRSTKVLQA 73
>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase;
2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A
Length = 240
Score = 91.1 bits (227), Expect = 6e-24
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 46 RIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEG-VNPKEIKVTLGEH 104
I+GG H P++A++ G CG LI + VLTAAHC + V LG H
Sbjct: 2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAH 61
Query: 105 DRLSKNES 112
LSKNE+
Sbjct: 62 S-LSKNEA 68
>2xw9_A Complement factor D; immune system, hydrolase, serine protease,
alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB:
2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A
1fdp_A 2xwa_A 1dst_A 4d9q_A
Length = 228
Score = 90.7 bits (226), Expect = 7e-24
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
I+GG + H P++A++ G CG L+A++ VL+AAHC+E +++V LG H
Sbjct: 1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHS- 59
Query: 107 LSKNES 112
LS+ E
Sbjct: 60 LSQPEP 65
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 93.9 bits (233), Expect = 8e-24
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 34 CNCACGQVERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV- 92
+ CG + N + PW + K + C LI+ + VLTAAHC
Sbjct: 216 TDTICGV-----GNMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGN 270
Query: 93 NPKEIKVTLGEHDRLSKNES--VPVIIH 118
+ +V +G+ E +I
Sbjct: 271 DHSLWRVNVGDPKSQWGKEFLIEKAVIS 298
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 90.8 bits (226), Expect = 1e-23
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 9/79 (11%)
Query: 47 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 105
++ G +T+ + PW L K K CGA LI VLTAAHC++ K++ V LGE+D
Sbjct: 1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMD--ESKKLLVRLGEYD 58
Query: 106 RLSKNESVP------VIIH 118
+ V +H
Sbjct: 59 LRRWEKWELDLDIKEVFVH 77
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody,
allosteric inhibitor, EGF-like DO glycoprotein,
hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo
sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*
Length = 248
Score = 89.6 bits (223), Expect = 2e-23
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEG-VNPKEIKVTLGEHD 105
I+GG+ + PW+AA+ G +C +L+ V++AAHC + V LG+H
Sbjct: 1 IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHF 59
Query: 106 RLSKNESVP------VIIH--FSVSNT 124
+ I + +SV N
Sbjct: 60 FNRTTDVTQTFGIEKYIPYTLYSVFNP 86
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine
proteinases, trypsin-like serine protease, tumor marker,
hydrolase; 1.61A {Homo sapiens}
Length = 232
Score = 89.6 bits (223), Expect = 2e-23
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 105
IVGG + E+PW A+L G CGATLI +++AAHC NP + G
Sbjct: 1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTI 60
Query: 106 RLSKNESVPV---IIH 118
+ + I+H
Sbjct: 61 K-PSKMKRGLRRIIVH 75
>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS;
1.70A {Solenopsis invicta} SCOP: b.47.1.2
Length = 222
Score = 89.1 bits (222), Expect = 2e-23
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHD 105
IVGG + ++P+ +L G CGA+++ +VLTAAHC++G+ N +KV +G +
Sbjct: 1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNY 60
Query: 106 RLSKNESVPV---IIH 118
+ V +++
Sbjct: 61 LSESGDVYDVEDAVVN 76
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein,
zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo
sapiens} SCOP: b.47.1.2
Length = 221
Score = 88.7 bits (221), Expect = 3e-23
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 47 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 103
IVGG+ + H P++A+L G +CG TLI VLTAAHC+ + + + V LG
Sbjct: 1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60
Query: 104 HDRLSKNES 112
H+ + E
Sbjct: 61 HN-VRTQEP 68
>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase,
secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A
2zgj_A
Length = 240
Score = 88.8 bits (221), Expect = 4e-23
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
I+GG H P++A+L + G CG L+ + VLTAAHC+ ++++ LG H
Sbjct: 1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQ-RMAQLRLVLGLHTL 59
Query: 107 LSKNESVPV---IIH 118
S + + I H
Sbjct: 60 DSPGLTFHIKAAIQH 74
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B
1qrz_A
Length = 247
Score = 88.8 bits (221), Expect = 5e-23
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 13/94 (13%)
Query: 38 CGQ-----VERNQRIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEG 91
CG+ + R+VGG V H +PW +L T+ G +CG TLI+ VLTAAHC+E
Sbjct: 4 CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63
Query: 92 -VNPKEIKVTLGEHDRLSKNESVP------VIIH 118
P KV LG H ++ V + +
Sbjct: 64 SPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 97
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 91.5 bits (227), Expect = 5e-23
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 29 SSMNHCNCACGQ----VERNQRIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLT 84
+CG R +RIVGG +L + PW A+ CG I +LT
Sbjct: 300 IKSLLPKLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILT 359
Query: 85 AAHCIEGVNPKEIKVTLGEHDRLSKNESVP-------VIIH 118
AAHC+ ++ D + + +I H
Sbjct: 360 AAHCLRASKTHRYQIWTTVVDWIHPDLKRIVIEYVDRIIFH 400
>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine
proteinase, C-terminal peptidase; 2.35A {Bos taurus}
SCOP: b.47.1.2
Length = 251
Score = 88.8 bits (221), Expect = 6e-23
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 38 CG----QVERNQRIVGGNVTKLHEFPWIAAL----TKKGKFYCGATLIAKRHVLTAAHCI 89
CG Q + R+VGG H +PW +L + CG TLI HVLTAAHCI
Sbjct: 1 CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60
Query: 90 EGVNPKEIKVTLGEHDRLSKNES----VPV---IIH 118
N +V LG+++ ++E+ V V +H
Sbjct: 61 S--NTLTYRVALGKNNLEVEDEAGSLYVGVDTIFVH 94
>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease,
fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens}
SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*
Length = 252
Score = 88.5 bits (220), Expect = 7e-23
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGK------FYCGATLIAKRHVLTAAHCIEG-VNPKEIKV 99
I GG + PW AA+ K + F CG LI+ +L+AAHC + P + V
Sbjct: 1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTV 60
Query: 100 TLGEHDRLSKNESVP------VIIH 118
LG R+ E I+H
Sbjct: 61 ILGRTYRVVPGEEEQKFEVEKYIVH 85
>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic
resolution, hydrolase/hydrolase inhibitor complex; 1.20A
{Pontastacus leptodactylus} SCOP: b.47.1.2
Length = 237
Score = 87.7 bits (218), Expect = 1e-22
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 47 IVGGNVTKLHEFPWIAAL----TKKGKFYCGATLIAKRHVLTAAHCIEG---VNPKEIKV 99
IVGG L EFP+ + +CGA++ + + +TA HC+ G NP +++
Sbjct: 1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQI 60
Query: 100 TLGEHDRLSKNESVP------VIIH 118
GE D S +I+H
Sbjct: 61 VAGELDMSVNEGSEQIITVSKIILH 85
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 90.7 bits (225), Expect = 1e-22
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 29 SSMNHCNCACGQVERNQRIVGGNVTKLHEFPWIAALTKKG---KFYCGATLIAKRHVLTA 85
+ + RIVGG + E+PW L + CG ++I + +LTA
Sbjct: 370 TLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTA 429
Query: 86 AHCIEGV-NPKEIKVTLGEHDRLSKNESVP------VIIH 118
AHC GV +PK ++V G ++ E +IIH
Sbjct: 430 AHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIH 469
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 86.8 bits (216), Expect = 2e-22
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
IVGG + +P AAL ++CG +LI+ +LTAAHC++G + V LG H+
Sbjct: 1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDG--AGFVDVVLGAHN- 57
Query: 107 LSKNESVPVIIHFS 120
+ ++E+ V I +
Sbjct: 58 IREDEATQVTIQST 71
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes,
fibrinogen binding, glycosylati hydrolase; 1.43A
{Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A*
Length = 234
Score = 86.8 bits (216), Expect = 2e-22
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
++GG+ ++E + A F+C TLI + VLTAAHC + ++ LG H +
Sbjct: 1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHC----DNTNFQMKLGVHSK 56
Query: 107 LSKNES------VPVIIH 118
NE I
Sbjct: 57 KVLNEDEQTRNPKEKFIC 74
>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
complement pathway like domain, glycoprotein, hydrolase,
hydroxylation, immune response; 2.60A {Homo sapiens}
SCOP: b.47.1.2
Length = 242
Score = 86.5 bits (215), Expect = 3e-22
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEG-----VNPKEIKVTL 101
I+GG K+ FPW G G L+ R +LTAAH + + + V L
Sbjct: 1 IIGGQKAKMGNFPWQVFTNIHG--RGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFL 58
Query: 102 GEHDRLSKNESVP-----VIIH 118
G + + V +H
Sbjct: 59 GHTNVEELMKLGNHPIRRVSVH 80
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase,
hydroxy immune response, innate immunity, sushi,
coagulation, compl pathway; 2.55A {Homo sapiens} PDB:
4djz_B
Length = 251
Score = 87.0 bits (216), Expect = 3e-22
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 21/93 (22%)
Query: 47 IVGGNVTKLHEFPWIAALTK-KGKFYCGATLIAKRHVLTAAHCIEG-------------- 91
I G + PWIA L+ G+ +CG +L+ ++TAAHC+
Sbjct: 1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDL 60
Query: 92 VNPKEIKVTLGEHDRLSKNESVP------VIIH 118
++P + K+ LG+H RL +E+ +H
Sbjct: 61 LSPSDFKIILGKHWRLRSDENEQHLGVKHTTLH 93
>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase -
serine proteinase (GAM inactive serine proteinase
(alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP:
b.47.1.2
Length = 240
Score = 86.5 bits (215), Expect = 3e-22
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 46 RIVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 105
V V + PW A+ + K+ CG L+ + VLTAAHC + +V LG+++
Sbjct: 3 PPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCY----NDKYQVWLGKNN 58
Query: 106 RLSKNESVPVI 116
L S
Sbjct: 59 FLEDEPSDQHR 69
>1fxy_A Coagulation factor XA-trypsin chimera; protease,
chloromethylketone, hydrolase-hydrolase I complex; HET:
0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2
Length = 228
Score = 86.0 bits (214), Expect = 4e-22
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 47 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 105
IVGG K E PW A L ++ + +CG T++++ ++LTAAHC+ K KV +G+ +
Sbjct: 1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLY--QAKRFKVRVGDRN 58
Query: 106 RLSKNESVPVI 116
+ V
Sbjct: 59 TEQEEGGEAVH 69
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor
complex, serine proteinase, benzamidine phosphonate,
serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens}
PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A*
3p8g_A* 3p8f_A*
Length = 241
Score = 86.1 bits (214), Expect = 4e-22
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKF-YCGATLIAKRHVLTAAHCIEG------VNPKEIKV 99
+VGG E+PW +L G+ CGA+LI+ +++AAHC +P +
Sbjct: 1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTA 60
Query: 100 TLGEHDRLSKNESVP-------VIIH 118
LG HD+ ++ +I H
Sbjct: 61 FLGLHDQSQRSAPGVQERRLKRIISH 86
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor;
mutagenically deglycosyalted human plasma kallikrein
protease domain; HET: BAM; 1.40A {Homo sapiens} PDB:
2anw_A*
Length = 241
Score = 86.1 bits (214), Expect = 4e-22
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 47 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 102
IVGG + E+PW +L + CG +LI + VLTAAHC +G+ ++ G
Sbjct: 1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSG 60
Query: 103 EHDRLSKNESVP------VIIH 118
+ + P +IIH
Sbjct: 61 ILELSDITKDTPFSQIKEIIIH 82
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin
membrane, disulfide bond, glycoprotein, hydrolase,
membrane protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 86.6 bits (215), Expect = 4e-22
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEG-VNPKEIKVTLGEHD 105
I GG+ ++PW ++T +G CG +L++++ VL+AAHC + + +V LG H
Sbjct: 1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQ 60
Query: 106 RLSKNESVP------VIIH 118
S +E +I H
Sbjct: 61 LDSYSEDAKVSTLKDIIPH 79
>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2
PDB: 2kai_A 1hia_A
Length = 80
Score = 81.4 bits (202), Expect = 7e-22
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
I+GG + + PW A+ F CG L+ + VLTAAHC +V LG H+
Sbjct: 1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCK----NDNYEVWLGRHN- 55
Query: 107 LSKNES 112
L +NE+
Sbjct: 56 LFENEN 61
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation,
fibrinolysis, plasminogen activation; HET: ABV; 1.45A
{Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U*
1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U*
2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U*
1vj9_U* 1sc8_U* ...
Length = 247
Score = 85.4 bits (212), Expect = 9e-22
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGK-----FYCGATLIAKRHVLTAAHCIEG-VNPKEIKVT 100
I+GG T + PW AA+ ++ + + CG +LI+ V++A HC ++ V
Sbjct: 1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVY 60
Query: 101 LGEHDRLSKNESVP------VIIH 118
LG S + +I+H
Sbjct: 61 LGRSRLNSNTQGEMKFEVENLILH 84
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG;
1.70A {Homo sapiens}
Length = 238
Score = 85.3 bits (212), Expect = 1e-21
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
IVGG + H PW AAL F CG L+ ++ VLTAAHCI ++ LG H+
Sbjct: 1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISD----NYQLWLGRHNL 56
Query: 107 LSKNESVPVI 116
+ +
Sbjct: 57 FDDENTAQFV 66
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6,
benzamidine, protease, brain serine protease,
myelencephalon specific protease, MSP, ZYME; 1.56A {Homo
sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*
Length = 223
Score = 84.9 bits (211), Expect = 1e-21
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
+V G P+ AAL G CG LI VLTAAHC ++V LG+H+
Sbjct: 1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHC----KKPNLQVFLGKHNL 56
Query: 107 LSKNESVPVI 116
+ S
Sbjct: 57 RQRESSQEQS 66
>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural
proteo europe, spine, structural genomics, hydrolase;
HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*
Length = 223
Score = 84.9 bits (211), Expect = 1e-21
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
I+ G H PW AAL + + +C L+ + VL+AAHC + LG H
Sbjct: 1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCF----QNSYTIGLGLHSL 56
Query: 107 LSKNES 112
+ E
Sbjct: 57 EADQEP 62
>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A
Length = 234
Score = 84.5 bits (210), Expect = 2e-21
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
I+GGN H P++ L+ K C LIAK VLTAAHC K +V LG H
Sbjct: 1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLN---KRSQVILGAHS- 56
Query: 107 LSKNES 112
+++ E
Sbjct: 57 ITREEP 62
>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus
musculus} SCOP: b.47.1.2
Length = 225
Score = 84.5 bits (210), Expect = 2e-21
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
I+ G H PW AAL + + CG L+ R VLTAAHC ++ V LG+H
Sbjct: 1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHC----KKQKYSVRLGDHSL 56
Query: 107 LSKNESVPVI 116
S+++ I
Sbjct: 57 QSRDQPEQEI 66
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate
conformations, alternative splicing, glycoprotein,
hydrolase, protease, secreted; HET: K7J; 1.00A {Homo
sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A
Length = 224
Score = 84.1 bits (209), Expect = 2e-21
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
I+ G PW AL + +CG L+ +R VLTAAHC E V LG
Sbjct: 1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHC----KMNEYTVHLGSDTL 56
Query: 107 LSKNE-SVPV---IIH 118
+ + H
Sbjct: 57 GDRRAQRIKASKSFRH 72
>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation,
hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC;
1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A*
2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A*
3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*
Length = 245
Score = 84.6 bits (210), Expect = 2e-21
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFY---CGATLIAKRHVLTAAHCIEG--VNPKEIKVTL 101
IVGG ++PW +L + +++ CG +LI + VLTAAHC+ + ++V L
Sbjct: 1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQL 60
Query: 102 GEHDRLSKNESVPV---IIH 118
E +++ +PV I+H
Sbjct: 61 REQHLYYQDQLLPVSRIIVH 80
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes
scabiei type hominis}
Length = 228
Score = 84.2 bits (209), Expect = 2e-21
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 49 GGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 105
GG T + + PW A+ + CG ++++ VLTAAHC+ P+ I + +
Sbjct: 2 GGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTN 61
Query: 106 RLSKNESVP----VIIH 118
+
Sbjct: 62 LWEDPGKSDPYVSHVYL 78
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA
inhibitor complex, covalent inhibitor, alternative
splicing, blood coagulation; HET: INH; 1.60A {Homo
sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A*
1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A*
1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A*
2fda_A* ...
Length = 238
Score = 83.8 bits (208), Expect = 3e-21
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 47 IVGGNVTKLHEFPWIAALTKKG---KFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLG 102
IVGG + E+PW L + CG ++I + +LTAAHC GV +PK ++V G
Sbjct: 1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSG 60
Query: 103 EHDRLSKNESVP------VIIH 118
++ E +IIH
Sbjct: 61 ILNQSEIKEDTSFFGVQEIIIH 82
>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase;
1.42A {Equus caballus} SCOP: b.47.1.2
Length = 237
Score = 83.4 bits (207), Expect = 4e-21
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
I+GG + H PW A+ +G F CG L+ + VLTAAHC+ + ++ LG H+
Sbjct: 1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM----SDDYQIWLGRHNL 56
Query: 107 LSKNESVPVI 116
++
Sbjct: 57 SKDEDTAQFH 66
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI,
protein-protein interaction, non-cognate binding, S1
pocket, primary specificity; 1.70A {Bos taurus} SCOP:
b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E
1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A
1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...
Length = 245
Score = 83.8 bits (208), Expect = 4e-21
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 38 CGQ------VERNQRIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIE 90
CG + RIV G +PW +L K G +CG +LI + V+TAAHC
Sbjct: 1 CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHC-- 58
Query: 91 GVNPKEIKVTLGEHDRLSKNESVP------VIIH 118
V GE D+ S +E + V +
Sbjct: 59 -GVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKN 91
>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation;
1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A
Length = 230
Score = 82.6 bits (205), Expect = 9e-21
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 47 IVGGNVTKLHEFPWIAAL----TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 102
I+ G FP+ A L + + +CG +LI + +LTAAHC+ + V LG
Sbjct: 1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHD--AVSVVVYLG 58
Query: 103 EHDRLSKNESVPV---IIH 118
+ V I H
Sbjct: 59 SAVQYEGEAVVNSERIISH 77
>2zch_P Prostate-specific antigen; human PSA, kallikrein related
peptidases, antibodies, prostate cancer, glycoprotein,
hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens}
PDB: 2zck_P* 2zcl_P* 3qum_P*
Length = 237
Score = 82.7 bits (205), Expect = 1e-20
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
IVGG + H PW + +G+ CG L+ + VLTAAHCI + + LG H
Sbjct: 1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCI----RNKSVILLGRHSL 56
Query: 107 LSKNESVPVI 116
++ V
Sbjct: 57 FHPEDTGQVF 66
>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC
MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB:
1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A
Length = 227
Score = 81.8 bits (203), Expect = 1e-20
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 47 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 103
I+GG+ K H P++A L +K CG LI VLTAAHC I VTLG
Sbjct: 1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCW----GSSINVTLGA 56
Query: 104 HDRLSKNES 112
H+ + + E
Sbjct: 57 HN-IKEQEP 64
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A,
LUNG; chymotrypsin homology, hormone/growth factor
complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A
Length = 240
Score = 81.5 bits (202), Expect = 3e-20
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
+V G T+ W+ +L + K CG +LI + VLTA C + K+ + LG HD
Sbjct: 1 VVNGIPTR-TNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHD- 58
Query: 107 LSKNESVPVIIHFSVSN 123
+ +VS
Sbjct: 59 VHGRGDEKCKQVLNVSQ 75
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation,
hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG;
2.30A {Homo sapiens} PDB: 2psy_A*
Length = 227
Score = 81.1 bits (201), Expect = 3e-20
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 47 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 105
I+ G+ +H PW AAL + + YCGA L+ + +LTAAHC K +V LG +
Sbjct: 1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHC----RKKVFRVRLGHYS 56
Query: 106 RLSKNES 112
ES
Sbjct: 57 LSPVYES 63
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine
esterase, glycosylation, extracellular; HET: NAG; 1.75A
{Agkistrodon halys}
Length = 238
Score = 81.1 bits (201), Expect = 3e-20
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 47 IVGGNVTKLHEFPWIAAL--TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH 104
I+GG+ ++E ++ AL ++ +CG TLI + VLTAAHC + K ++ LG H
Sbjct: 1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHC----DRKNFRIKLGMH 56
Query: 105 DRLSKNESVPVII 117
+ NE +
Sbjct: 57 SKKVPNEDEQTRV 69
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET:
NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*
Length = 237
Score = 81.1 bits (201), Expect = 4e-20
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
+VGG + + PW A+ + + CG L+ + VLTAAHC + +V LG++
Sbjct: 1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCY----VDQYEVWLGKNKL 56
Query: 107 LSKNESVPVI 116
+ S
Sbjct: 57 FQEEPSAQHR 66
>1cgh_A Cathepsin G; inflammation, specificity, serine protease,
hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A
{Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A*
1kyn_A*
Length = 224
Score = 80.6 bits (200), Expect = 4e-20
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 47 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 103
I+GG ++ H P++A L + G+ CG L+ + VLTAAHC I VTLG
Sbjct: 1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW----GSNINVTLGA 56
Query: 104 HDRLSKNES 112
H+ + + E+
Sbjct: 57 HN-IQRREN 64
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double
six-stranded beta-barrels, hydrola glycosylation; HET:
NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB:
3s9b_A* 3s9a_A* 3sbk_A*
Length = 234
Score = 80.7 bits (200), Expect = 5e-20
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 47 IVGGNVTKLHEFPWIAALTKKG--KFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEH 104
+VGG+ ++E P++ AL +C LI + VLTAAHC + + I++ LG H
Sbjct: 1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHC----DRRNIRIKLGMH 56
Query: 105 DRLSKNESVPVII 117
+ +NE + +
Sbjct: 57 SKNIRNEDEQIRV 69
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET:
NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB:
2aip_A*
Length = 231
Score = 80.3 bits (199), Expect = 6e-20
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
++GG+ ++E ++A + CG TLI + VLTA HC + +++ LG H+
Sbjct: 1 VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHC----DRGNMRIYLGMHNL 55
Query: 107 LSKNES 112
N+
Sbjct: 56 KVLNKD 61
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 81.3 bits (201), Expect = 7e-20
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 47 IVGGNVTKLHEFPWIAAL------TKKGKFYCGATLIAKRHVLTAAHCIEG-VNPKEIKV 99
I+GG +PW+ +L + CG +L+ + +LTAAHC + ++
Sbjct: 1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRL 60
Query: 100 TLGEHDRLSKNESVP-----------VIIH 118
G + +IIH
Sbjct: 61 IFGAKEVEWGTNKPVKPPLQERYVEKIIIH 90
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 82.3 bits (203), Expect = 9e-20
Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 19 FNVDDLTTINSSMNHC------NCACGQVERNQRIVGGNVTKLHEFPWIAAL----TKKG 68
V D+ + CG T H+ PW A + KG
Sbjct: 186 CKVKDMECLEDVFYQMIDESQSLSLCGM-----VWEHRKGTDYHKQPWQAKISVIRPSKG 240
Query: 69 KFYCGATLIAKRHVLTAAHCIEGV-NPKEIKVTLGEHDRLSKNESVPVIIH 118
C ++++ VLTAAHC IKV++G R + E V+ H
Sbjct: 241 HESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEV--VLFH 289
>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos
taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B*
1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B
1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...
Length = 131
Score = 77.2 bits (191), Expect = 1e-19
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 47 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 105
IV G +PW +L K G +CG +LI + V+TAAHC V GE D
Sbjct: 1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV---TTSDVVVAGEFD 57
Query: 106 RLSKNESVP------VIIH 118
+ S +E + V +
Sbjct: 58 QGSSSEKIQKLKIAKVFKN 76
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 79.1 bits (196), Expect = 1e-19
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 47 IVGGNVTKLHEFPWIAAL----TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 102
I+GG + H P++A L K + CG LI+++ VLTAAHC +EI V LG
Sbjct: 1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCK----GREITVILG 56
Query: 103 EHDRLSKNES 112
HD + K ES
Sbjct: 57 AHD-VRKRES 65
>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG;
2.40A {Bos taurus} SCOP: b.47.1.2
Length = 227
Score = 79.1 bits (196), Expect = 2e-19
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 8/69 (11%)
Query: 47 IVGGNVTKLHEFPWIAAL---TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGE 103
I+GG+ K H P++A L T CG L+ + VLTAAHC+ I VTLG
Sbjct: 1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL----GSSINVTLGA 56
Query: 104 HDRLSKNES 112
H+ + + E
Sbjct: 57 HN-IMERER 64
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A*
4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A*
2hvx_A* 3s0n_A* 2rdl_A
Length = 226
Score = 79.1 bits (196), Expect = 2e-19
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 47 IVGGNVTKLHEFPWIAAL----TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 102
I+GG K H P++A L + +CG LI + VLTAAHC + I VTLG
Sbjct: 1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCA----GRSITVTLG 56
Query: 103 EHDRLSKNES 112
H+ +++ E
Sbjct: 57 AHN-ITEEED 65
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2
Length = 236
Score = 79.2 bits (196), Expect = 2e-19
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGK----FYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 102
+VGG V + + +PW +L K CG +LI + V+TAAHC++ + + +V LG
Sbjct: 1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVD--SARTWRVVLG 58
Query: 103 EHDRLSKNESVP------VIIH 118
EH+ + V IH
Sbjct: 59 EHNLNTNEGKEQIMTVNSVFIH 80
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus
scrofa} SCOP: b.47.1.2
Length = 241
Score = 79.2 bits (196), Expect = 2e-19
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 47 IVGGNVTKLHEFPWIAAL----TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 102
+VGG + + +PW +L + + + CG TL+ + VLTAAHCI + + +V LG
Sbjct: 1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCIS--SSRTYRVVLG 58
Query: 103 EHDRLSKNESVP------VIIH 118
H + +++H
Sbjct: 59 RHSLSTNEPGSLAVKVSKLVVH 80
>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease,
zymogen; 2.50A {Mus musculus} PDB: 3g01_A
Length = 227
Score = 78.3 bits (194), Expect = 3e-19
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 47 IVGGNVTKLHEFPWIAAL----TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 102
I+GGN H P++A K +CG L+ + VLTAAHC + + VTLG
Sbjct: 1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCK----GRSMTVTLG 56
Query: 103 EHDRLSKNES 112
H+ + E
Sbjct: 57 AHN-IKAKEE 65
>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease,
catalytic intermediate, atomic resolution,
hydrolase-hydrolase inhibitor complex; 0.94A {Sus
scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B*
1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A*
1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A*
1esa_A 1esb_A* 1est_A* ...
Length = 240
Score = 78.4 bits (194), Expect = 4e-19
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 47 IVGGNVTKLHEFPWIAAL----TKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLG 102
+VGG + + +P +L CG TLI + V+TAAHC++ +V +G
Sbjct: 1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD--RELTFRVVVG 58
Query: 103 EHDRLSKNESVP------VIIH 118
EH+ N + +++H
Sbjct: 59 EHNLNQNNGTEQYVGVQKIVVH 80
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage,
salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar}
SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A
2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A
2eek_A
Length = 222
Score = 77.9 bits (193), Expect = 4e-19
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
IVGG K + P +L G +CG +L+ + V++AAHC ++V LGEH+
Sbjct: 1 IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY----KSRVEVRLGEHNI 55
Query: 107 LSKNESVPVI 116
S I
Sbjct: 56 KVTEGSEQFI 65
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP:
b.47.1.2
Length = 235
Score = 77.6 bits (192), Expect = 8e-19
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
IVGG + + PW A+ ++ CG LI V+TAAHC +V LG ++
Sbjct: 1 IVGGYKCEKNSQPWQVAVI--NEYLCGGVLIDPSWVITAAHCY----SNNYQVLLGRNNL 54
Query: 107 LSKNESVPVI 116
Sbjct: 55 FKDEPFAQRR 64
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus}
PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A
1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A*
1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A
...
Length = 223
Score = 76.8 bits (190), Expect = 1e-18
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 47 IVGGNVTKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHDR 106
IVGG + P+ +L G +CG +LI + V++AAHC I+V LGE +
Sbjct: 1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCY----KSGIQVRLGEDNI 55
Query: 107 LSKNESVPVI 116
+ I
Sbjct: 56 NVVEGNEQFI 65
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 76.3 bits (188), Expect = 5e-18
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 34 CNCACGQVE---RNQRIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCI 89
+ C + L + PW L +GK +CG +I + VLT A C
Sbjct: 37 DHKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCS 96
Query: 90 EGVNPKEIKVTLGEHDRLSKNESVPV---IIH 118
+ I V + + + +H
Sbjct: 97 LL--HRNITVKTYFNRTSQDPLMIKITHVHVH 126
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 75.9 bits (187), Expect = 9e-18
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 32 NHCNCACGQVERNQRIVGGNVTKLHEFPWIAALT-KKGKFYCGATLIAKRHVLTAAHCIE 90
+ Q L + PW LT +GK +CG +I + VLT A C
Sbjct: 79 HKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSL 138
Query: 91 GVNPKEIKVTLGEHDRLSKNESVPV---IIH 118
+ I V + + + +H
Sbjct: 139 L--HRNITVKTYFNRTSQDPLMIKITHVHVH 167
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I*
3hs0_D* 2ok5_A* 2xwb_F*
Length = 741
Score = 76.7 bits (188), Expect = 1e-17
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 18/111 (16%)
Query: 19 FNVDDLTTINSSMNH------CNCACGQVERNQRIVGGNVTKLHEFPWIAAL----TKKG 68
F V D+ + CG T H+ PW A + KG
Sbjct: 428 FKVKDMENLEDVFYQMIDESQSLSLCGM-----VWEHRKGTDYHKQPWQAKISVIRPSKG 482
Query: 69 KFYCGATLIAKRHVLTAAHCIEG-VNPKEIKVTLGEHDRLSKNESVPVIIH 118
C ++++ VLTAAHC IKV++G R + E V+ H
Sbjct: 483 HESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEV--VLFH 531
>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease;
1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C
Length = 240
Score = 70.7 bits (174), Expect = 3e-16
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 50 GNVTKLHEFPWIAALTKKGKF----YCGATLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 105
G + + W +L + CG +LIA V+TA HCI + +V LGE+D
Sbjct: 2 GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS--TSRTYQVVLGEYD 59
Query: 106 RLSKNESVP--------VIIH 118
R S + +H
Sbjct: 60 RSVLEGSEQVIPINAGDLFVH 80
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 68.8 bits (169), Expect = 1e-15
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 47 IVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAAHCIEG--VNPKEIKVTLGE 103
+VGG+ PW +L ++G+ +CG +L+ ++ +LTA C + +V LG
Sbjct: 1 VVGGH---PGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGT 57
Query: 104 HDRLSKNESVPVIIHFSVSN 123
+ P + V+
Sbjct: 58 LF-QNPQHGEPSLQRVPVAK 76
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 69.3 bits (169), Expect = 3e-15
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 28 NSSMNHCNCACGQVERNQRIVGGNVTKLHEFPWIAAL-TKKGKFYCGATLIAKRHVLTAA 86
S + + R+VGG V H +PW +L T+ G +CG TLI+ VLTAA
Sbjct: 543 APSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAA 602
Query: 87 HCIEG-VNPKEIKVTLGEHDRLSKNESVP------VIIH 118
HC+E P KV LG H ++ V + +
Sbjct: 603 HCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLE 641
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus
intermedius} SCOP: b.47.1.1 PDB: 1p3e_A
Length = 215
Score = 47.7 bits (113), Expect = 9e-08
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 47 IVGGN-----VTKLHEFPWIA-ALTKKGKFYCGATLIAKRHVLTAAHCIE----GVNPKE 96
+V G+ V P+ + A G C TLIA +LT HC+ +
Sbjct: 1 VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAK 60
Query: 97 IKVTLGEHDRLSKNESVPV 115
V G +D + N S +
Sbjct: 61 GSVYPGMNDSTAVNGSANM 79
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme,
hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1
PDB: 1qy6_A
Length = 274
Score = 46.7 bits (110), Expect = 3e-07
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 47 IVGGN----VTKLHEFPW-----IAALTKKGKFYCGATLIAKRHVLTAAHCIEGVN--PK 95
I+ N +T + I G F ++ K +LT H ++ + P
Sbjct: 2 ILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPH 61
Query: 96 EIKVTLGEHD 105
+K +
Sbjct: 62 ALKAFPSAIN 71
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A
{Staphylococcus aureus} SCOP: b.47.1.1
Length = 268
Score = 44.3 bits (104), Expect = 2e-06
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 47 IVGGN----VTKLHEFPW-----IAALTKKGKFYCGATLIAKRHVLTAAHCIEGVN--PK 95
I+ N +T + I G F ++ K +LT H ++ + P
Sbjct: 2 ILPNNDRHQITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPH 61
Query: 96 EIKVTLGEHD 105
+K +
Sbjct: 62 ALKAFPSAIN 71
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A
{Nesterenkonia abyssinica}
Length = 218
Score = 40.5 bits (94), Expect = 3e-05
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 59 PWIAAL---TKKGKFYCGATLIA---KRHVLTAAHCI 89
P I + T +G F C A ++A + V TA HC+
Sbjct: 7 PHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCL 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.007
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 31/96 (32%)
Query: 3 ISS---SHFLSDSSDVIVDFNVDDLTTINSSMNHCNCACGQVE-----RNQRIVGGNVTK 54
++S SH L +SD+I DL N S N + V + R++ G++++
Sbjct: 423 VASPFHSHLLVPASDLI----NKDLVKNNVSFNAKDIQI-PVYDTFDGSDLRVLSGSISE 477
Query: 55 LH-----EFP--WIAALTKKGKFYCGATLIAKRHVL 83
P W AT H+L
Sbjct: 478 RIVDCIIRLPVKWETTTQ------FKAT-----HIL 502
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase;
2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A
Length = 246
Score = 32.6 bits (74), Expect = 0.020
Identities = 7/49 (14%), Positives = 13/49 (26%)
Query: 53 TKLHEFPWIAALTKKGKFYCGATLIAKRHVLTAAHCIEGVNPKEIKVTL 101
+ + + KG LI K ++T H +
Sbjct: 31 NARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIF 79
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A
{Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*
Length = 268
Score = 28.9 bits (63), Expect = 0.36
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 61 IAALTKKGKFYCGATLI------AKRHVLTAAHCIEGVNP 94
+ A +K G C +L+ K + LTA HC G
Sbjct: 25 VGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTAS 64
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure
initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 28.7 bits (63), Expect = 0.48
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 1 MIISSSHFLSDSSDVIVDFNVDDLTTINSSMNHCNC 36
++I +F +D S V V D IN + C
Sbjct: 34 LLIYGENFGTDVSKVKVKIGGKDAIVINVKSTYVYC 69
>3k6y_A Serine protease, possible membrane-associated serine protease;
oxidative stress, disulfide, BENT helix, HY protease;
1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A
Length = 237
Score = 28.5 bits (64), Expect = 0.48
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 77 IAKRHVLTAAHCIEGVNPKEIKVTLG 102
I+ V+T AH + G N + V G
Sbjct: 65 ISPDRVMTNAHVVAGSN--NVTVYAG 88
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 28.5 bits (63), Expect = 0.60
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 1 MIISSSHFLSDSSDVIVDFNVDDLTTINSSMN 32
M++ +F SD S + V D + +
Sbjct: 34 MLLYGENFGSDISKIKVTIGGQDSKVVGAKGK 65
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus
aureus} PDB: 2w7u_A
Length = 200
Score = 27.8 bits (62), Expect = 0.80
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 2/36 (5%)
Query: 77 IAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNES 112
+ K ++T H + + K + H
Sbjct: 29 VGKNTIVTNKHIAKSND--IFKNRVSAHHSSKGKGG 62
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}
Length = 204
Score = 27.1 bits (60), Expect = 1.4
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 76 LIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESVP 114
++ K +LT H + + D+ +
Sbjct: 28 VVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSI 66
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second
tetrahedral inter tetrapeptide, beta barrels, alpha
helix, hydrolase; HET: GOL; 1.18A {Streptomyces
griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E
1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E*
2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E
1sgp_E 1cso_E 1ct0_E ...
Length = 185
Score = 26.7 bits (59), Expect = 1.9
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 72 CGATLIAKRHVLTAAHCIEG 91
+ + LTA HC +G
Sbjct: 18 FNVRSGSTYYFLTAGHCTDG 37
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A
{Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A
1exf_A 1due_A
Length = 242
Score = 26.4 bits (58), Expect = 2.3
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 76 LIAKRHVLTAAHCIEGVNPKEIKVTLGEHDRLSKNESVPV 115
LI K VLT H + N KV+ N +
Sbjct: 61 LIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTET 100
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol
protease, RNA replication, ribosomal frameshifting,
catalytic triad, membrane; 2.00A {Human astrovirus 1}
Length = 163
Score = 25.8 bits (57), Expect = 4.1
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 77 IAKRHVLTAAHCIEGVNPKEIKVTLG 102
+ ++TAAH + + V
Sbjct: 27 FSGNDIVTAAHVVGNN--TFVNVCYE 50
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 25.6 bits (57), Expect = 5.2
Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 49 GGNVTKLHEFPWIAALTKKGKFYCGATLIAKR--HVLTAAHCIEGVNPKEIKVTLGEHD 105
L W AL G + KR + A + EGV +K +
Sbjct: 250 LEEHLALKA--WQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPYARVKEAFAQRG 306
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A
{Staphylococcus aureus}
Length = 210
Score = 25.5 bits (56), Expect = 5.5
Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 76 LIAKRHVLTAAHCIEG-VNPKEIKVTLGEHDRLSKNESVPVIIH 118
+I K ++T H + I + I
Sbjct: 29 VIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISD 72
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for
infectious disease, hydrolase; 1.70A {Coccidioides
immitis}
Length = 158
Score = 24.8 bits (54), Expect = 8.2
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 7/51 (13%)
Query: 62 AALTKKGKFYCGA-------TLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 105
AA++ G+ + G A+ VL A I E
Sbjct: 56 AAISDDGRVFSGVNVYHFNGGPCAELVVLGVAAAAGATKLTHIVAIANEGR 106
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family,
zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus}
SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A
2z3i_A*
Length = 130
Score = 24.4 bits (53), Expect = 9.1
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 62 AALTKKGKFYCGA-------TLIAKRHVLTAAHCIEGVNPKEIKVTLGEHD 105
AAL+ G+ + G A+ VL A N I E+
Sbjct: 32 AALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAAAAGNLTCIVAIGNENR 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.401
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,859,552
Number of extensions: 98738
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 112
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)