Query psy12898
Match_columns 64
No_of_seqs 108 out of 923
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:34:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0047|consensus 100.0 5.4E-30 1.2E-34 183.1 4.8 63 2-64 173-235 (505)
2 COG0753 KatE Catalase [Inorgan 100.0 1.9E-29 4.1E-34 181.6 6.9 63 2-64 165-227 (496)
3 cd08156 catalase_clade_3 Clade 99.9 1.7E-27 3.6E-32 170.6 7.6 63 2-64 109-171 (429)
4 PLN02609 catalase 99.9 2.4E-27 5.1E-32 171.9 7.5 63 2-64 166-228 (492)
5 cd08154 catalase_clade_1 Clade 99.9 3E-27 6.4E-32 170.7 7.5 63 2-64 151-213 (469)
6 cd00328 catalase Catalase heme 99.9 8.5E-27 1.8E-31 167.1 7.5 63 2-64 109-171 (433)
7 cd08155 catalase_clade_2 Clade 99.9 1.4E-26 2.9E-31 166.4 7.5 63 2-64 112-178 (443)
8 PRK11249 katE hydroperoxidase 99.9 3.5E-26 7.5E-31 171.8 7.2 62 3-64 231-292 (752)
9 cd08157 catalase_fungal Fungal 99.9 8.2E-24 1.8E-28 152.2 7.4 63 2-64 125-187 (451)
10 PF00199 Catalase: Catalase; 99.8 7.3E-19 1.6E-23 124.0 5.1 63 2-64 149-211 (384)
11 cd08153 srpA_like Catalase-lik 99.7 2.2E-16 4.9E-21 107.9 7.3 62 2-64 117-178 (295)
12 cd08150 catalase_like Catalase 99.6 4.6E-16 1E-20 105.8 6.5 60 2-63 104-163 (283)
13 cd08151 AOS Allene oxide synth 99.4 6.3E-13 1.4E-17 92.4 5.9 52 11-64 132-183 (328)
14 cd08152 y4iL_like Catalase-lik 98.5 1.4E-07 3E-12 65.1 4.4 55 5-64 117-179 (305)
15 PF13511 DUF4124: Domain of un 91.0 0.22 4.7E-06 26.3 2.1 15 44-58 14-28 (60)
16 PF03456 uDENN: uDENN domain; 86.5 0.86 1.9E-05 24.4 2.5 19 40-58 41-59 (65)
17 PF00393 6PGD: 6-phosphoglucon 77.0 0.53 1.2E-05 33.0 -0.8 19 38-56 269-287 (291)
18 smart00800 uDENN Domain always 75.2 3.9 8.4E-05 23.2 2.6 17 42-58 67-83 (89)
19 PHA02446 hypothetical protein 73.5 4.7 0.0001 25.6 2.9 31 3-33 120-150 (166)
20 PLN02350 phosphogluconate dehy 69.8 1.9 4E-05 32.1 0.5 18 39-56 458-475 (493)
21 PF00379 Chitin_bind_4: Insect 69.1 10 0.00022 19.4 3.2 17 45-61 30-46 (52)
22 KOG2653|consensus 65.0 4.8 0.0001 29.9 1.8 23 39-61 452-474 (487)
23 PRK09287 6-phosphogluconate de 64.7 2.1 4.5E-05 31.5 -0.1 18 39-56 435-452 (459)
24 PTZ00142 6-phosphogluconate de 61.6 2.1 4.6E-05 31.5 -0.5 18 39-56 449-466 (470)
25 PF08447 PAS_3: PAS fold; Int 61.4 20 0.00043 19.0 3.6 18 45-62 57-74 (91)
26 TIGR00873 gnd 6-phosphoglucona 60.9 2.8 6.1E-05 30.8 0.0 15 39-53 443-457 (467)
27 KOG3343|consensus 55.0 13 0.00029 24.4 2.4 23 39-61 5-27 (175)
28 COG2334 Putative homoserine ki 50.3 39 0.00084 23.9 4.3 50 10-61 7-56 (331)
29 cd00836 FERM_C FERM_C domain. 47.9 25 0.00054 19.8 2.6 20 40-59 1-20 (92)
30 PF01217 Clat_adaptor_s: Clath 47.7 23 0.00049 21.4 2.5 19 43-61 2-20 (141)
31 PF12570 DUF3750: Protein of u 47.5 26 0.00056 22.0 2.8 25 39-63 16-40 (128)
32 COG0362 Gnd 6-phosphogluconate 45.3 9.9 0.00021 28.5 0.8 18 39-56 447-464 (473)
33 PF06832 BiPBP_C: Penicillin-B 41.9 34 0.00074 19.0 2.5 21 40-60 69-89 (89)
34 PF15644 Tox-PL: Papain fold t 41.7 23 0.0005 20.8 1.9 37 22-58 63-103 (111)
35 PF06582 DUF1136: Repeat of un 38.5 25 0.00055 16.3 1.4 14 13-26 5-18 (28)
36 cd01224 PH_Collybistin Collybi 35.6 44 0.00095 20.3 2.4 16 43-58 72-87 (109)
37 COG5030 APS2 Clathrin adaptor 35.0 55 0.0012 21.1 2.9 20 42-61 1-20 (152)
38 PF11008 DUF2846: Protein of u 34.9 74 0.0016 18.7 3.4 22 42-63 83-104 (117)
39 PF14598 PAS_11: PAS domain; P 34.1 83 0.0018 18.3 3.4 19 45-63 68-86 (111)
40 PF03230 Antirestrict: Antires 33.4 35 0.00076 20.1 1.7 16 7-22 75-90 (94)
41 PRK11768 serine/threonine prot 31.3 1.2E+02 0.0025 20.8 4.3 48 11-61 8-57 (325)
42 PF08481 GBS_Bsp-like: GBS Bsp 30.7 54 0.0012 19.0 2.2 19 39-58 70-88 (95)
43 PF14005 YpjP: YpjP-like prote 30.0 1.5E+02 0.0033 18.8 5.1 50 7-64 47-96 (136)
44 PHA01399 membrane protein P6 28.8 32 0.0007 23.4 1.1 21 7-27 164-187 (242)
45 PRK06737 acetolactate synthase 27.9 38 0.00082 19.2 1.2 21 11-31 8-28 (76)
46 PF08565 CDC37_M: Cdc37 Hsp90 27.9 41 0.00088 21.8 1.5 19 1-19 56-76 (173)
47 PF10902 DUF2693: Protein of u 27.7 92 0.002 18.0 2.8 18 42-59 1-18 (83)
48 PF10030 DUF2272: Uncharacteri 27.0 62 0.0013 21.3 2.2 23 15-37 41-63 (183)
49 PF11453 DUF2950: Protein of u 26.5 53 0.0012 23.1 1.9 21 31-55 223-243 (271)
50 COG3159 Uncharacterized protei 26.3 76 0.0016 21.7 2.6 32 2-33 3-34 (218)
51 cd02966 TlpA_like_family TlpA- 26.1 33 0.00071 18.3 0.7 17 42-58 97-113 (116)
52 COG5350 Predicted protein tyro 26.1 20 0.00042 23.6 -0.3 26 7-34 82-107 (172)
53 PF05952 ComX: Bacillus compet 25.8 56 0.0012 17.7 1.5 16 8-23 5-20 (57)
54 PF14120 YhzD: YhzD-like prote 25.1 89 0.0019 17.3 2.3 20 38-57 39-58 (61)
55 PF06124 DUF960: Staphylococca 25.0 60 0.0013 19.0 1.7 14 43-56 37-50 (94)
56 PF04910 Tcf25: Transcriptiona 24.5 84 0.0018 22.4 2.7 28 3-30 24-54 (360)
57 PF07243 Phlebovirus_G1: Phleb 24.5 84 0.0018 24.1 2.7 19 41-59 95-113 (526)
58 KOG4342|consensus 23.6 84 0.0018 25.4 2.6 28 33-60 427-454 (1078)
59 cd02964 TryX_like_family Trypa 23.4 1.6E+02 0.0035 17.0 5.1 13 45-57 102-114 (132)
60 PF06903 VirK: VirK protein; 22.8 1.8E+02 0.004 17.4 3.6 21 30-51 34-54 (100)
61 PF11333 DUF3135: Protein of u 22.4 98 0.0021 17.8 2.2 22 2-23 3-24 (83)
62 COG5122 TRS23 Transport protei 21.6 1.3E+02 0.0027 18.9 2.7 18 42-59 2-19 (134)
63 PF13174 TPR_6: Tetratricopept 21.5 52 0.0011 14.0 0.8 12 7-18 22-33 (33)
64 KOG3545|consensus 21.5 1.4E+02 0.003 20.8 3.1 36 29-64 62-97 (249)
65 PF02672 CP12: CP12 domain; I 21.2 41 0.00089 18.8 0.4 17 3-19 48-64 (71)
66 cd07245 Glo_EDI_BRP_like_9 Thi 21.0 1.5E+02 0.0032 15.6 2.9 29 27-55 83-111 (114)
67 smart00727 STI1 Heat shock cha 20.9 35 0.00076 16.3 0.1 14 4-17 23-36 (41)
68 PF12581 DUF3756: Protein of u 20.8 60 0.0013 16.4 1.0 17 20-36 22-38 (41)
69 PF14327 CSTF2_hinge: Hinge do 20.6 1.4E+02 0.0031 16.8 2.7 23 3-25 44-66 (84)
70 PF00328 His_Phos_2: Histidine 20.5 2.6E+02 0.0056 18.3 5.1 50 13-62 295-346 (347)
71 cd04895 ACT_ACR_1 ACT domain-c 20.5 1.2E+02 0.0026 16.8 2.3 42 13-54 9-53 (72)
72 PRK11251 DNA-binding transcrip 20.2 2.1E+02 0.0047 17.2 5.1 42 18-62 41-84 (109)
No 1
>KOG0047|consensus
Probab=99.96 E-value=5.4e-30 Score=183.07 Aligned_cols=63 Identities=65% Similarity=1.243 Sum_probs=61.9
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
|+||+++|||++.+|||+||+++||||||||++||||+|||+||||+||++|+.+|||||||+
T Consensus 173 lkD~~m~wDf~t~~pEslHqv~~lFsDrGtP~~yrhM~Gyg~hTyk~vNk~G~~~YvkfH~kt 235 (505)
T KOG0047|consen 173 LKDPDMFWDFLTLRPESLHQVMFLFSDRGTPDGYRHMNGYGSHTYKMVNKEGKAHYVKFHFKT 235 (505)
T ss_pred ccCcchhHHHhhcCHhhhhheeeeeccCCCCcccccccccccceEEEEccCCceEEEEEEEec
Confidence 789999999999999999999999999999999999999999999999999999999999986
No 2
>COG0753 KatE Catalase [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-29 Score=181.61 Aligned_cols=63 Identities=59% Similarity=1.070 Sum_probs=61.5
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
|+|++++|||++.+|||+||++|++||||||+|||+|+|||+|||+|||++||.+||||||++
T Consensus 165 l~~~~~~wDF~s~~PES~H~vt~l~SDrGiP~syR~M~GfgvHtf~~vN~~Ge~~~VKfH~k~ 227 (496)
T COG0753 165 LRDADTFWDFWSLNPESLHQVTWLMSDRGIPASYRHMEGFGVHTFKFVNAKGKRVWVKFHFKP 227 (496)
T ss_pred cccchhhhhhhhcCcHHHHHHHHHhcCCCCChhhhcCCCccceeEEEEcCCCCEEEEEEEEEe
Confidence 678899999999999999999999999999999999999999999999999999999999986
No 3
>cd08156 catalase_clade_3 Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.
Probab=99.94 E-value=1.7e-27 Score=170.58 Aligned_cols=63 Identities=68% Similarity=1.205 Sum_probs=61.4
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.|||++||++|++++||+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 109 ~~d~~~~~df~~~~Pes~h~~~~l~s~rg~P~sy~~~~~~gvhtf~~vn~~G~~~~Vk~h~~p 171 (429)
T cd08156 109 LKDPDMFWDFWSLSPESLHQVTILFSDRGIPDGYRHMNGYGSHTFSLVNAKGERFWVKFHFKT 171 (429)
T ss_pred CCCHHHHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCccccceEEEEcCCCCEEEEEEEEEe
Confidence 579999999999999999999999999999999999999999999999999999999999985
No 4
>PLN02609 catalase
Probab=99.94 E-value=2.4e-27 Score=171.89 Aligned_cols=63 Identities=46% Similarity=0.878 Sum_probs=61.5
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.|||++||++|+|+++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 166 ~~dp~~~~dF~~~~PEs~h~~~~l~s~rg~P~syr~~~~~gvhtF~~vn~~G~~~~Vk~h~~p 228 (492)
T PLN02609 166 IQEPWRILDFLSHHPESLHMFTFLFDDRGIPQDYRHMEGFGVHTYKLINKAGKAHYVKFHWKP 228 (492)
T ss_pred CCChhHHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCcccccceEEECCCCCEEEEEEEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999985
No 5
>cd08154 catalase_clade_1 Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.94 E-value=3e-27 Score=170.68 Aligned_cols=63 Identities=44% Similarity=0.870 Sum_probs=61.4
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.|||++||++|++|+||+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 151 ~~dp~~~~dF~~~~PEs~h~~~~l~s~rg~P~sy~~~~g~gvhtf~~vn~~G~~~~VK~h~~p 213 (469)
T cd08154 151 IQDPNRIFDFFSHVPESTHMLTFLYSDWGTPASYRHMDGSGVHTYKWVNAEGKVVYVKYHWKP 213 (469)
T ss_pred CCCHHHHHHHHHcChHHHHHHHHHhcCCCCCCCcccCCccccceeEEEcCCCCEEEEEEEEEe
Confidence 579999999999999999999999999999999999999999999999999999999999985
No 6
>cd00328 catalase Catalase heme-binding enzyme. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Most catalases exist as tetramers of 65KD subunits containing a protoheme IX group buried deep inside the structure. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.94 E-value=8.5e-27 Score=167.06 Aligned_cols=63 Identities=63% Similarity=1.147 Sum_probs=61.4
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.|||++||++|++++||+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 109 ~~d~~~~~~f~~~~Pes~h~~~~~~s~r~~P~sy~~~~~~gvhtf~~vn~~G~~~~vk~~~~p 171 (433)
T cd00328 109 LPDADRFWDFLSLRPESLHQVSFLFSDRGIPAAYRHMNGYGSHTFKLVNANGKVHYVKFHWKT 171 (433)
T ss_pred CCCHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCcccCCccccceEEEEcCCCCEEEEEEEEEe
Confidence 579999999999999999999999999999999999999999999999999999999999985
No 7
>cd08155 catalase_clade_2 Clade 2 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 2 catalases are mostly found in bacteria and fungi; they have a large subunit size of 75 to 84 kDa, and bind a heme d group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=99.93 E-value=1.4e-26 Score=166.40 Aligned_cols=63 Identities=48% Similarity=0.973 Sum_probs=60.1
Q ss_pred CCCc----hhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDW----DAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~----~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++|| +++|||++.|||++||++|++++||+|+|||+|+|||+|||+|||++|+++||||||++
T Consensus 112 ~~dp~~~~~~~~dF~~~~Pes~h~~~~l~s~rg~P~sy~~~~~~gvhtf~~vna~G~~~~Vk~~~~p 178 (443)
T cd08155 112 MPQAQSAHDTFWDFVSLQPESAHMVMWAMSDRAIPRSYRMMEGFGVHTFRLVNAQGKSTFVKFHWKP 178 (443)
T ss_pred CCCcchhhhhHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCcccccceEEEcCCCCEEEEEEEEEe
Confidence 4676 66999999999999999999999999999999999999999999999999999999985
No 8
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.93 E-value=3.5e-26 Score=171.78 Aligned_cols=62 Identities=47% Similarity=1.017 Sum_probs=60.0
Q ss_pred CCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 3 QDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 3 ~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
+||+++|||++.|||++||++|++|+||+|+|||+|+|||||||+|||++|+.+||||||++
T Consensus 231 ~~~~~~~dF~s~~Pes~h~~~~~~s~r~~P~s~r~~~gfgvhtF~~vna~G~~~~VKfh~kP 292 (752)
T PRK11249 231 SAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKP 292 (752)
T ss_pred CChHHHHHHHhcChHHHHHHHHHhcCCCCCCCcccCCcccccceEEEcCCCCEEEEEEEEEE
Confidence 36899999999999999999999999999999999999999999999999999999999984
No 9
>cd08157 catalase_fungal Fungal catalases similar to yeast catalases A and T. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. This family of fungal catalases has a relatively small subunit size, and binds a protoheme IX (heme b) group buried deep inside the structure. Fungal catalases also bind NADPH as a second redox-active cofactor. They form tetramers; in eukaryotic cells, catalases are typically located in peroxisomes. Saccharomyces cerevisiae catalase T is found in the cytoplasm, though.
Probab=99.90 E-value=8.2e-24 Score=152.22 Aligned_cols=63 Identities=52% Similarity=0.985 Sum_probs=61.3
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.+||++|+++|+++++|+|+||++|+|||+|||+|||++|+.+||||||++
T Consensus 125 ~~d~~~~~df~~~~Pes~~~~~~l~s~~g~p~sy~~~~~~g~htf~~vn~~G~~~~vK~~~~P 187 (451)
T cd08157 125 LKDSTMFWDYLSQNPESIHQVMILFSDRGTPASYRSMNGYSGHTYKWVNPDGSFKYVQFHLKS 187 (451)
T ss_pred CCChHHHHHHHhhChHHHHHHHHHhccCCCCCCcccCCccccceeEEECCCCCEEEEEEEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999984
No 10
>PF00199 Catalase: Catalase; InterPro: IPR011614 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. Based on a phylogenetic analysis, catalases can be classified into clade 1, 2 and 3. Clade 1 contains small subunit catalases from plants and a subset of bacteria; clade 2 contains large subunit catalases from fungi and a second subset of bacteria; and clade 3 contains small subunit catalases from bacteria, fungi, protists, animals, and plants [, ]. This entry represent the core-forming domain of mono-functional, haem-containing catalases. It does not cover the region that carries an immune-responsive amphipathic octa-peptide that is found in the C-terminal of some catalases (IPR010582 from INTERPRO).; GO: 0004096 catalase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 7CAT_A 3NWL_D 4BLC_D 1TH3_D 1TH4_A 1TGU_B 1TH2_D 3RGS_D 3RE8_D 3RGP_C ....
Probab=99.76 E-value=7.3e-19 Score=124.02 Aligned_cols=63 Identities=43% Similarity=0.750 Sum_probs=59.3
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++|++++++|++.|||+++++.++.+++++|.||++++|||+|||+|+|++|+.+||||+|+.
T Consensus 149 ~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~p~s~~~~~y~s~~tf~~~~~~G~~~~vK~~~~P 211 (384)
T PF00199_consen 149 LPDPNRLWAFLAAHPEALHQVAWLFSDRPTPASYAHMNYYSIHTFKFTNADGERRYVKYRLVP 211 (384)
T ss_dssp SBCHHHHHHHHHHSGGGHHHHHHHHSGGGSBSSGGGS-EEEESEEEEEETTSEEEEEEEEEEE
T ss_pred ccChHHHHHHhhcChhhhhhhhhhhccCCCCCCccCCCcEeeeeEEeccccCcccEEEEEecC
Confidence 468999999999999999999999988999999999999999999999999999999999973
No 11
>cd08153 srpA_like Catalase-like heme-binding proteins similar to the uncharacterized srpA. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to the Synechococcus elongatus PCC 7942 periplasmic protein srpA, of mostly bacterial origin. The plasmid-encoded srpA is regulated by sulfate, but does not seem to function in its uptake or metabolism.
Probab=99.67 E-value=2.2e-16 Score=107.94 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=57.5
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
.+||+++++|++.|||+.+++.|+.+ +++|.||++++|||+|+|+|+|++|+.++|||+|+.
T Consensus 117 ~~~~~~~~~f~~~~P~~~~~~~~~~~-~~~p~s~~~~~y~s~~~f~f~~~~G~~~~vk~~~~P 178 (295)
T cd08153 117 KPDPAKLKAFLAAHPEAAAFLAWIKT-APPPASFANTTYYGVNAFYFTNANGKRQPVRWRFVP 178 (295)
T ss_pred CCCHHHHHHHHhhCHHHHHHHHHHcC-CCCCCCcccCCccceeeEEEECCCCCEEEEEEEEEE
Confidence 35788999999999999999999975 589999999999999999999999999999999973
No 12
>cd08150 catalase_like Catalase-like heme-binding proteins and protein domains. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity.
Probab=99.64 E-value=4.6e-16 Score=105.80 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=57.1
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEe
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 63 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~ 63 (64)
++|++++++|++.|||+++++.++++ ++|.||++++|||+|||+|+|++|+.+||||+++
T Consensus 104 ~~~~~~~~~~~~~~p~~~~~~~~~~~--~~p~s~~~~~y~s~~~f~f~~~~gk~~~vr~~~~ 163 (283)
T cd08150 104 EPPLDFIAWYVEKRPEDLPNLLGARS--QVPDSYAAARYFSQVTFAFINGAGKYRVVRSKDN 163 (283)
T ss_pred CCChHHHHHHHHhChhHHHHHHHHhC--CCCCCccccceEeeeeEEEeccCCEEEEEEEEec
Confidence 46899999999999999999999985 8999999999999999999999999999999986
No 13
>cd08151 AOS Allene oxide synthase. Allene oxide synthase converts a fatty acid hydroperoxide to an allene oxide, which is an unstable epoxide. In corals, the enzyme is part of a eiconaosid synthesis pathway that is initiated by a lipoxygenase, which generates the fatty acid hydroperoxides in the first step. The structure of allene oxide synthase closely resembles that of catalase, but allene oxide synthase does not have catalase activity.
Probab=99.39 E-value=6.3e-13 Score=92.40 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=44.0
Q ss_pred HHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 11 FISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 11 f~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
+...||++..+ .|. +.+++|.||++++|||+|||+|+|++|+.+||||+|+.
T Consensus 132 ~~~~~p~~~~~-~~~-~~~~~p~s~~~~~y~s~~~f~f~~~~G~~~~vK~~~~P 183 (328)
T cd08151 132 AKLRGPLARYA-VWA-SLRRAPDSYTDLHYYSQICYEFVALDGKSRYARFRLLP 183 (328)
T ss_pred hhhcCHHHHhh-hhh-cccCCCCCcccccceeEeeEEEECCCCCEEEEEEEEEE
Confidence 33468888755 333 56799999999999999999999999999999999973
No 14
>cd08152 y4iL_like Catalase-like heme-binding proteins similar to the uncharacterized y4iL. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to Rhizobium sp. NGR234 y4iL, of mostly bacterial origin.
Probab=98.52 E-value=1.4e-07 Score=65.06 Aligned_cols=55 Identities=9% Similarity=-0.026 Sum_probs=43.9
Q ss_pred chhHHHHHhc-CchHHHHHHHHHhC-------CCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 5 WDAFWDFISL-LPETTHQVMILFSD-------RGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 5 ~~~~~df~~~-~Pes~~~~~~~~s~-------~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
+++..+|+.. +|+....+.++... ..+|.||++++|||+|+|+|+|. +|||+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~y~s~~~fr~g~~-----~vk~~~~P 179 (305)
T cd08152 117 PDGAKAALSAPLRGALRVLEAAGGESPTLKLGGHPPAHPLGETYWSQAPYRFGDY-----VAKYSVVP 179 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCccccceecccceeEcce-----eEEEEEEE
Confidence 4566677777 88888888776421 35789999999999999999876 99999873
No 15
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=91.02 E-value=0.22 Score=26.31 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=13.2
Q ss_pred eeeEEEcCCCCeEEE
Q psy12898 44 HTFKLVNKDNEPVYC 58 (64)
Q Consensus 44 htfk~vn~~G~~~~V 58 (64)
--|||++++|+.+|-
T Consensus 14 ~vYk~~D~~G~v~ys 28 (60)
T PF13511_consen 14 EVYKWVDENGVVHYS 28 (60)
T ss_pred cEEEEECCCCCEEEC
Confidence 579999999999883
No 16
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=86.50 E-value=0.86 Score=24.42 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=14.0
Q ss_pred cccceeeEEEcCCCCeEEE
Q psy12898 40 GYGSHTFKLVNKDNEPVYC 58 (64)
Q Consensus 40 ~~gvhtfk~vn~~G~~~~V 58 (64)
-=..|+|-++|.+|++.|+
T Consensus 41 ~~~~f~FvLT~~~G~r~Yg 59 (65)
T PF03456_consen 41 PPQFFSFVLTDEDGSRLYG 59 (65)
T ss_dssp SSCEEEEEEE-TTS-EEEE
T ss_pred CCeEEEEEEECCCCCEEEE
Confidence 3467899999999999885
No 17
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=77.04 E-value=0.53 Score=33.02 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=13.4
Q ss_pred CccccceeeEEEcCCCCeE
Q psy12898 38 MHGYGSHTFKLVNKDNEPV 56 (64)
Q Consensus 38 ~~~~gvhtfk~vn~~G~~~ 56 (64)
-++||.|||+-++++|.++
T Consensus 269 RDyFGaHtyeR~D~~g~fH 287 (291)
T PF00393_consen 269 RDYFGAHTYERIDKEGSFH 287 (291)
T ss_dssp HHHHH---EEBSSSSSEE-
T ss_pred HHHhcCcceeecCCCCCcC
Confidence 4799999999999999854
No 18
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=75.19 E-value=3.9 Score=23.19 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.6
Q ss_pred cceeeEEEcCCCCeEEE
Q psy12898 42 GSHTFKLVNKDNEPVYC 58 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~V 58 (64)
..|+|-+++.||++.|.
T Consensus 67 ~~f~FvLT~~dG~r~yG 83 (89)
T smart00800 67 QFFSFVLTDIDGSRRYG 83 (89)
T ss_pred cEEEEEEECCCCCEEEE
Confidence 56789999999999875
No 19
>PHA02446 hypothetical protein
Probab=73.46 E-value=4.7 Score=25.58 Aligned_cols=31 Identities=32% Similarity=0.678 Sum_probs=24.9
Q ss_pred CCchhHHHHHhcCchHHHHHHHHHhCCCCCC
Q psy12898 3 QDWDAFWDFISLLPETTHQVMILFSDRGIPD 33 (64)
Q Consensus 3 ~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~ 33 (64)
.|.-.+|||+.+-||.....+.+..-.|+|+
T Consensus 120 gdsl~vw~ylt~lpe~~rtqllmaalagipd 150 (166)
T PHA02446 120 GDSLGVWDYLTKLPEDQRTQLLMAALAGIPD 150 (166)
T ss_pred CCcccHHHHHhhCCchHHHHHHHHHHcCCCC
Confidence 4666799999999999887666666679986
No 20
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=69.78 E-value=1.9 Score=32.14 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=16.0
Q ss_pred ccccceeeEEEcCCCCeE
Q psy12898 39 HGYGSHTFKLVNKDNEPV 56 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G~~~ 56 (64)
++||.|||+-++.+|.++
T Consensus 458 d~FGaH~~~r~d~~g~~h 475 (493)
T PLN02350 458 DYFGAHTYERVDRPGSFH 475 (493)
T ss_pred HHhCCCceeeCCCCCCCc
Confidence 689999999999999754
No 21
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=69.14 E-value=10 Score=19.42 Aligned_cols=17 Identities=6% Similarity=0.346 Sum_probs=15.4
Q ss_pred eeEEEcCCCCeEEEEEE
Q psy12898 45 TFKLVNKDNEPVYCKFH 61 (64)
Q Consensus 45 tfk~vn~~G~~~~Vr~~ 61 (64)
.|.++++||+..-|+|.
T Consensus 30 sY~y~~pdG~~~~V~Y~ 46 (52)
T PF00379_consen 30 SYSYIDPDGQTRTVTYV 46 (52)
T ss_pred EEEEECCCCCEEEEEEE
Confidence 79999999999999874
No 22
>KOG2653|consensus
Probab=64.96 E-value=4.8 Score=29.89 Aligned_cols=23 Identities=17% Similarity=0.538 Sum_probs=20.2
Q ss_pred ccccceeeEEEcCCCCeEEEEEE
Q psy12898 39 HGYGSHTFKLVNKDNEPVYCKFH 61 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G~~~~Vr~~ 61 (64)
+|||-|||.+...+|+..-++|.
T Consensus 452 DYFGAHtye~l~~~~~~~HtnWt 474 (487)
T KOG2653|consen 452 DYFGAHTYELLGEPGKAIHTNWT 474 (487)
T ss_pred HhhccceeeecCCCcceeeeeec
Confidence 69999999999999988777773
No 23
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=64.69 E-value=2.1 Score=31.53 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.8
Q ss_pred ccccceeeEEEcCCCCeE
Q psy12898 39 HGYGSHTFKLVNKDNEPV 56 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G~~~ 56 (64)
++||.|||+-++++|.++
T Consensus 435 d~FGaH~~~r~d~~g~~h 452 (459)
T PRK09287 435 DYFGAHTYERTDKEGFFH 452 (459)
T ss_pred hHhCCCCcccCCCCCCCc
Confidence 799999999999998644
No 24
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=61.61 E-value=2.1 Score=31.54 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.8
Q ss_pred ccccceeeEEEcCCCCeE
Q psy12898 39 HGYGSHTFKLVNKDNEPV 56 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G~~~ 56 (64)
++||.|||+-++++|.++
T Consensus 449 d~FGaH~~~r~d~~g~~h 466 (470)
T PTZ00142 449 DYFGAHTYKRLDRPGAFH 466 (470)
T ss_pred HHhCCCCcccCCCCCCCC
Confidence 689999999999999754
No 25
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=61.40 E-value=20 Score=18.99 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=16.1
Q ss_pred eeEEEcCCCCeEEEEEEE
Q psy12898 45 TFKLVNKDNEPVYCKFHF 62 (64)
Q Consensus 45 tfk~vn~~G~~~~Vr~~~ 62 (64)
.|++++++|+..+++.+.
T Consensus 57 e~R~~~~~G~~~wi~~~~ 74 (91)
T PF08447_consen 57 EYRIRRKDGEYRWIEVRG 74 (91)
T ss_dssp EEEEEGTTSTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEEE
Confidence 899999999999998764
No 26
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=60.90 E-value=2.8 Score=30.84 Aligned_cols=15 Identities=27% Similarity=0.596 Sum_probs=14.2
Q ss_pred ccccceeeEEEcCCC
Q psy12898 39 HGYGSHTFKLVNKDN 53 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G 53 (64)
++||.|||+-++++|
T Consensus 443 d~FGaH~~~r~d~~g 457 (467)
T TIGR00873 443 DYFGAHTYERTDKPR 457 (467)
T ss_pred HHhccccccccCCCC
Confidence 699999999999999
No 27
>KOG3343|consensus
Probab=54.98 E-value=13 Score=24.41 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=20.2
Q ss_pred ccccceeeEEEcCCCCeEEEEEE
Q psy12898 39 HGYGSHTFKLVNKDNEPVYCKFH 61 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G~~~~Vr~~ 61 (64)
.-|.+.++-+.+.+|++.++||.
T Consensus 5 sly~vk~iliLD~~G~Ri~aKYY 27 (175)
T KOG3343|consen 5 SLYTVKAILILDSDGKRILAKYY 27 (175)
T ss_pred chhhhheEEEEcCCCCEeeeeec
Confidence 45788899999999999999984
No 28
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
Probab=50.28 E-value=39 Score=23.91 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=38.9
Q ss_pred HHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEE
Q psy12898 10 DFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61 (64)
Q Consensus 10 df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~ 61 (64)
.|..-.++.+...+.- .+.|+..++...+.+--.+|++...+|+. .+|++
T Consensus 7 ~~~~~~~~~~~~~l~~-~~~g~~~~~~~l~s~eN~~f~~~~~~g~~-iLki~ 56 (331)
T COG2334 7 VFTPLTSDEAAAALEA-YHYGLDGSLRGLNSEENSNFRVQTEDGRY-ILKIY 56 (331)
T ss_pred cccCcChHHHHHHHHh-cCcCccccccccccccCceEEEEecCCCe-EEEEe
Confidence 3444556666665544 46899999999999888899999999998 88875
No 29
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=47.94 E-value=25 Score=19.76 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=16.6
Q ss_pred cccceeeEEEcCCCCeEEEE
Q psy12898 40 GYGSHTFKLVNKDNEPVYCK 59 (64)
Q Consensus 40 ~~gvhtfk~vn~~G~~~~Vr 59 (64)
.||++-|...|.+|...++-
T Consensus 1 ~YGv~~~~vkd~~g~~~~lG 20 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLG 20 (92)
T ss_pred CCCeeeEEEECCCCCeEEEE
Confidence 58999999999998776654
No 30
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=47.66 E-value=23 Score=21.41 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=17.3
Q ss_pred ceeeEEEcCCCCeEEEEEE
Q psy12898 43 SHTFKLVNKDNEPVYCKFH 61 (64)
Q Consensus 43 vhtfk~vn~~G~~~~Vr~~ 61 (64)
|+++-+.|.+|+..+.||.
T Consensus 2 I~~i~i~n~~G~~i~~k~y 20 (141)
T PF01217_consen 2 IKAILILNSQGKRILSKYY 20 (141)
T ss_dssp EEEEEEEETTSEEEEEEES
T ss_pred EEEEEEEcCCCCEEEehhc
Confidence 6888899999999999984
No 31
>PF12570 DUF3750: Protein of unknown function (DUF3750); InterPro: IPR022224 This family of proteins is found in bacteria. Proteins in this family are typically between 175 and 265 amino acids in length.
Probab=47.52 E-value=26 Score=22.01 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=22.5
Q ss_pred ccccceeeEEEcCCCCeEEEEEEEe
Q psy12898 39 HGYGSHTFKLVNKDNEPVYCKFHFR 63 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G~~~~Vr~~~~ 63 (64)
..|++|+--.+.++|..+|-||.+.
T Consensus 16 G~fAvH~Wiv~K~~~a~~y~ryeV~ 40 (128)
T PF12570_consen 16 GIFAVHTWIVVKEAGASQYTRYEVV 40 (128)
T ss_pred EEEEEEeEEEEeeCCCCceeEEEEe
Confidence 3789999999999999999999875
No 32
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=45.29 E-value=9.9 Score=28.47 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.7
Q ss_pred ccccceeeEEEcCCCCeE
Q psy12898 39 HGYGSHTFKLVNKDNEPV 56 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G~~~ 56 (64)
+|||-|||.-++++|.++
T Consensus 447 DyFGAHtyeR~D~~~~fH 464 (473)
T COG0362 447 DYFGAHTYERTDKEGFFH 464 (473)
T ss_pred HhhcccceeecCCCCccc
Confidence 699999999999999543
No 33
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=41.91 E-value=34 Score=19.02 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.0
Q ss_pred cccceeeEEEcCCCCeEEEEE
Q psy12898 40 GYGSHTFKLVNKDNEPVYCKF 60 (64)
Q Consensus 40 ~~gvhtfk~vn~~G~~~~Vr~ 60 (64)
.=|-|+...+|++|+..=|+|
T Consensus 69 ~~G~h~l~vvD~~G~~~~V~~ 89 (89)
T PF06832_consen 69 RPGEHTLTVVDAQGRSASVRF 89 (89)
T ss_pred CCeeEEEEEEcCCCCEEEEEC
Confidence 668899999999999887764
No 34
>PF15644 Tox-PL: Papain fold toxin 1; PDB: 3B21_A.
Probab=41.66 E-value=23 Score=20.77 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=19.9
Q ss_pred HHHHHhCCCCCCCcCCCcccc----ceeeEEEcCCCCeEEE
Q psy12898 22 VMILFSDRGIPDGFRHMHGYG----SHTFKLVNKDNEPVYC 58 (64)
Q Consensus 22 ~~~~~s~~g~P~s~~~~~~~g----vhtfk~vn~~G~~~~V 58 (64)
+.-++.+.|.-..+.=+..+. .|+|-.++.+|+.+|+
T Consensus 63 i~~~l~~~~~gsr~~v~~~~~gg~~gHa~nvv~~~G~i~~~ 103 (111)
T PF15644_consen 63 IEDLLRDLGPGSRAIVSVSWKGGGPGHAFNVVNQNGKIVFL 103 (111)
T ss_dssp HHHHHHHS-TT-EEEEEETT-----TTEEEEEEE-SSEEEE
T ss_pred HHHHHHhCCCCcEEEEEEEEeccccceEEEEEeCCCeEEEE
Confidence 333334444444333333332 9999999999996554
No 35
>PF06582 DUF1136: Repeat of unknown function (DUF1136); InterPro: IPR010939 This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with IPR007110 from INTERPRO.
Probab=38.47 E-value=25 Score=16.31 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=12.3
Q ss_pred hcCchHHHHHHHHH
Q psy12898 13 SLLPETTHQVMILF 26 (64)
Q Consensus 13 ~~~Pes~~~~~~~~ 26 (64)
++||+++-.+..|-
T Consensus 5 TQhp~~lekIq~LE 18 (28)
T PF06582_consen 5 TQHPESLEKIQELE 18 (28)
T ss_pred ccCHHHHHHHHHHH
Confidence 68999999999885
No 36
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=35.63 E-value=44 Score=20.30 Aligned_cols=16 Identities=13% Similarity=0.391 Sum_probs=12.8
Q ss_pred ceeeEEEcCCCCeEEE
Q psy12898 43 SHTFKLVNKDNEPVYC 58 (64)
Q Consensus 43 vhtfk~vn~~G~~~~V 58 (64)
-|+|++++.+++.-|+
T Consensus 72 knafkl~~~~~~~~~~ 87 (109)
T cd01224 72 KNSLKIYSESTDEWYL 87 (109)
T ss_pred EEEEEEEEcCCCeEEE
Confidence 6899999999775554
No 37
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=35.00 E-value=55 Score=21.12 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=17.5
Q ss_pred cceeeEEEcCCCCeEEEEEE
Q psy12898 42 GSHTFKLVNKDNEPVYCKFH 61 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~Vr~~ 61 (64)
.|+.+=+.|.+|+.+.+||.
T Consensus 1 ~i~~vli~nrqgk~RL~K~y 20 (152)
T COG5030 1 MIKFVLIFNRQGKPRLVKWY 20 (152)
T ss_pred CeEEEEEEcCCCceeeeEee
Confidence 36778889999999999996
No 38
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=34.92 E-value=74 Score=18.66 Aligned_cols=22 Identities=9% Similarity=0.351 Sum_probs=19.4
Q ss_pred cceeeEEEcCCCCeEEEEEEEe
Q psy12898 42 GSHTFKLVNKDNEPVYCKFHFR 63 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~Vr~~~~ 63 (64)
+.....+.-+.|+.+|+|..++
T Consensus 83 ~~~~l~~~~~~G~~yy~r~~~~ 104 (117)
T PF11008_consen 83 GANSLDVTVEAGKTYYVRQDIS 104 (117)
T ss_pred CccEEEEEEcCCCEEEEEEEec
Confidence 5689999999999999998765
No 39
>PF14598 PAS_11: PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=34.07 E-value=83 Score=18.32 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=14.9
Q ss_pred eeEEEcCCCCeEEEEEEEe
Q psy12898 45 TFKLVNKDNEPVYCKFHFR 63 (64)
Q Consensus 45 tfk~vn~~G~~~~Vr~~~~ 63 (64)
.|+|..++|...+|+-.+.
T Consensus 68 ~yR~~~k~g~~vwvqt~~~ 86 (111)
T PF14598_consen 68 YYRFRTKNGGYVWVQTKAT 86 (111)
T ss_dssp EEEEE-TTSSEEEEEEEEE
T ss_pred eEEEEecCCcEEEEEEEEE
Confidence 4999999999999886653
No 40
>PF03230 Antirestrict: Antirestriction protein; InterPro: IPR004914 This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of Escherichia coli [].; PDB: 2WJ9_B 2KMG_A.
Probab=33.39 E-value=35 Score=20.15 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.2
Q ss_pred hHHHHHhcCchHHHHH
Q psy12898 7 AFWDFISLLPETTHQV 22 (64)
Q Consensus 7 ~~~df~~~~Pes~~~~ 22 (64)
++.||..+|||+..-+
T Consensus 75 ~Lr~ya~~HpE~~~I~ 90 (94)
T PF03230_consen 75 QLRDYALQHPESSAIF 90 (94)
T ss_dssp HHHHHHHCSTTHHHHH
T ss_pred HHHHHHHhChhHHHHH
Confidence 5889999999987643
No 41
>PRK11768 serine/threonine protein kinase; Provisional
Probab=31.26 E-value=1.2e+02 Score=20.85 Aligned_cols=48 Identities=19% Similarity=0.430 Sum_probs=35.4
Q ss_pred HHhcCchHHHHHHHHHhCCCCC--CCcCCCccccceeeEEEcCCCCeEEEEEE
Q psy12898 11 FISLLPETTHQVMILFSDRGIP--DGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61 (64)
Q Consensus 11 f~~~~Pes~~~~~~~~s~~g~P--~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~ 61 (64)
|-+..|+.+--+. ...|+. ......++|--..|++..++|+...+|++
T Consensus 8 ~~~l~p~~~~~a~---~~~g~~~~~~~~~l~s~eN~vy~v~~~~~~~~vlKv~ 57 (325)
T PRK11768 8 FQTLTPDLILDAL---ESLGLRVDGRLLALNSYENRVYQFGDEDGRRVVAKFY 57 (325)
T ss_pred CCCCChHHHHHHH---HHcCCCCccceEeeccccceEEEEecCCCCEEEEEEc
Confidence 5556676666555 334664 45677888888899999999999999974
No 42
>PF08481 GBS_Bsp-like: GBS Bsp-like repeat; InterPro: IPR013688 This repeat is found in a number of Streptococcus proteins including some hypothetical proteins and Bsp. Bsp is a protein of group B Streptococcus (GBS) which might control cell morphology [].
Probab=30.69 E-value=54 Score=18.95 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=15.5
Q ss_pred ccccceeeEEEcCCCCeEEE
Q psy12898 39 HGYGSHTFKLVNKDNEPVYC 58 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G~~~~V 58 (64)
.-|-||+| .++.+|+...+
T Consensus 70 G~Y~vhvY-~~~~~G~~~~l 88 (95)
T PF08481_consen 70 GTYHVHVY-ITDADGKMIGL 88 (95)
T ss_pred cEEEEEEE-EEcCCCcEEEE
Confidence 45889999 88999987765
No 43
>PF14005 YpjP: YpjP-like protein
Probab=29.97 E-value=1.5e+02 Score=18.81 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=35.6
Q ss_pred hHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 7 AFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 7 ~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
.+.+.+++.|+... . ++--|=....++|=+-|.+.|.+-.....|||++.
T Consensus 47 ~I~~~~~~~~~~~~--~------~l~ise~p~~g~gEKIFhiy~~~tg~d~lRFHVrr 96 (136)
T PF14005_consen 47 AIEDLLEQYPEDDL--Q------GLEISEAPSIGQGEKIFHIYNKKTGEDVLRFHVRR 96 (136)
T ss_pred HHHHHHHhCChhhc--c------ccccccCCCCCCCceEEEEecCCCCCeeEEEEecc
Confidence 45667777777731 1 22234445678999999999977777999999863
No 44
>PHA01399 membrane protein P6
Probab=28.75 E-value=32 Score=23.40 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=15.8
Q ss_pred hHHHHHhcCchHHH---HHHHHHh
Q psy12898 7 AFWDFISLLPETTH---QVMILFS 27 (64)
Q Consensus 7 ~~~df~~~~Pes~~---~~~~~~s 27 (64)
-+|||+..|||-.. ...||-.
T Consensus 164 g~wdfik~npel~agg~a~~wlgk 187 (242)
T PHA01399 164 GIWDFIKDNPELIAGGAAAAWLGK 187 (242)
T ss_pred hHHHHhccCHHHHhhhHHHHHhCC
Confidence 48999999999764 4556643
No 45
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=27.95 E-value=38 Score=19.15 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=18.3
Q ss_pred HHhcCchHHHHHHHHHhCCCC
Q psy12898 11 FISLLPETTHQVMILFSDRGI 31 (64)
Q Consensus 11 f~~~~Pes~~~~~~~~s~~g~ 31 (64)
+..++|+.+..+.-+|+.||.
T Consensus 8 ~v~n~pGVL~Ri~~lf~rRgf 28 (76)
T PRK06737 8 VIHNDPSVLLRISGIFARRGY 28 (76)
T ss_pred EEecCCCHHHHHHHHHhccCc
Confidence 457899999999999998876
No 46
>PF08565 CDC37_M: Cdc37 Hsp90 binding domain; InterPro: IPR013874 Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the Hsp90 chaperone (heat shock protein 90) binding domain of Cdc37 []. It is found between the N-terminal Cdc37 domain IPR013855 from INTERPRO, which is predominantly involved in kinase binding, and the C-terminal domain of Cdc37 IPR013873 from INTERPRO whose function is unclear. ; PDB: 1US7_B 2W0G_A 2K5B_B.
Probab=27.85 E-value=41 Score=21.78 Aligned_cols=19 Identities=26% Similarity=0.414 Sum_probs=14.1
Q ss_pred CCC--CchhHHHHHhcCchHH
Q psy12898 1 MLQ--DWDAFWDFISLLPETT 19 (64)
Q Consensus 1 ~l~--D~~~~~df~~~~Pes~ 19 (64)
||+ |.+...+||..||+-+
T Consensus 56 ~i~~~dy~~S~~fL~~hp~l~ 76 (173)
T PF08565_consen 56 MIPSGDYEDSEQFLLEHPELL 76 (173)
T ss_dssp C----SHHHHHHHHHHCGGG-
T ss_pred CCCCCCHHHHHHHHHhCcccc
Confidence 466 8889999999999754
No 47
>PF10902 DUF2693: Protein of unknown function (DUF2693); InterPro: IPR024401 This family of proteins is found in bacteria and bacteriophages. Its function is unknown.
Probab=27.72 E-value=92 Score=18.04 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.7
Q ss_pred cceeeEEEcCCCCeEEEE
Q psy12898 42 GSHTFKLVNKDNEPVYCK 59 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~Vr 59 (64)
|+|.|.|..+||..+-.+
T Consensus 1 G~h~~~feK~DGtiR~a~ 18 (83)
T PF10902_consen 1 GEHEFVFEKVDGTIRVAK 18 (83)
T ss_pred CcEEEEEEecCCCEEEEE
Confidence 689999999999876543
No 48
>PF10030 DUF2272: Uncharacterized protein conserved in bacteria (DUF2272); InterPro: IPR019262 This is a domain of unknown function found in proteins of unknown function.
Probab=27.04 E-value=62 Score=21.25 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHhCCCCCCCcCC
Q psy12898 15 LPETTHQVMILFSDRGIPDGFRH 37 (64)
Q Consensus 15 ~Pes~~~~~~~~s~~g~P~s~~~ 37 (64)
.|=|+.|+.|+|...|+|..|..
T Consensus 41 ~pWSAaFISwVMr~AG~~~~f~~ 63 (183)
T PF10030_consen 41 EPWSAAFISWVMRKAGVPERFPY 63 (183)
T ss_pred CchhHHHHHHHHHHcCCCCCCCC
Confidence 88899999999999999985443
No 49
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=26.48 E-value=53 Score=23.08 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=15.6
Q ss_pred CCCCcCCCccccceeeEEEcCCCCe
Q psy12898 31 IPDGFRHMHGYGSHTFKLVNKDNEP 55 (64)
Q Consensus 31 ~P~s~~~~~~~gvhtfk~vn~~G~~ 55 (64)
.|..|.. -||+|| +||.+|..
T Consensus 223 wPa~YG~---TGVmtF-~Vn~~g~V 243 (271)
T PF11453_consen 223 WPAEYGE---TGVMTF-MVNQDGQV 243 (271)
T ss_pred eehhhCC---CceEEE-EECCCCcE
Confidence 3666655 489999 89999874
No 50
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.29 E-value=76 Score=21.67 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=24.5
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPD 33 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~ 33 (64)
--|+..+-||+..|||-.-+-.-+...-++|.
T Consensus 3 ~lda~~VadyL~~hPeFf~~h~~Ll~~L~lph 34 (218)
T COG3159 3 ELDAEDVADYLRQHPEFFIQHAELLEELRLPH 34 (218)
T ss_pred cCCHHHHHHHHHhCcHHHHhCHHHHHHcCCCC
Confidence 35888999999999998766666655567764
No 51
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=26.10 E-value=33 Score=18.31 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=12.8
Q ss_pred cceeeEEEcCCCCeEEE
Q psy12898 42 GSHTFKLVNKDNEPVYC 58 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~V 58 (64)
++-++.++|++|+..+.
T Consensus 97 ~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 97 GLPTTFLIDRDGRIRAR 113 (116)
T ss_pred ccceEEEECCCCcEEEE
Confidence 44577899999987654
No 52
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=26.07 E-value=20 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.0
Q ss_pred hHHHHHhcCchHHHHHHHHHhCCCCCCC
Q psy12898 7 AFWDFISLLPETTHQVMILFSDRGIPDG 34 (64)
Q Consensus 7 ~~~df~~~~Pes~~~~~~~~s~~g~P~s 34 (64)
.+.||....|+..+.+..-. .|+++|
T Consensus 82 ~i~DF~~~wp~~apllIHC~--aGISRS 107 (172)
T COG5350 82 AIIDFADEWPRFAPLLIHCY--AGISRS 107 (172)
T ss_pred HHHHHHhcCccccceeeeec--cccccc
Confidence 68899999999999988765 588776
No 53
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=25.82 E-value=56 Score=17.72 Aligned_cols=16 Identities=13% Similarity=0.316 Sum_probs=13.6
Q ss_pred HHHHHhcCchHHHHHH
Q psy12898 8 FWDFISLLPETTHQVM 23 (64)
Q Consensus 8 ~~df~~~~Pes~~~~~ 23 (64)
+-.|+-+|||.+.++.
T Consensus 5 iV~YLv~nPevl~kl~ 20 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLK 20 (57)
T ss_pred HHHHHHHChHHHHHHH
Confidence 5579999999998876
No 54
>PF14120 YhzD: YhzD-like protein
Probab=25.11 E-value=89 Score=17.25 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=16.5
Q ss_pred CccccceeeEEEcCCCCeEE
Q psy12898 38 MHGYGSHTFKLVNKDNEPVY 57 (64)
Q Consensus 38 ~~~~gvhtfk~vn~~G~~~~ 57 (64)
..++.-||-+.|++.||..+
T Consensus 39 Ek~~~~~THR~v~~~GKLiL 58 (61)
T PF14120_consen 39 EKGYEEKTHRCVSSSGKLIL 58 (61)
T ss_pred HCChhhcceeeeCCCCcEEE
Confidence 35678899999999999765
No 55
>PF06124 DUF960: Staphylococcal protein of unknown function (DUF960); InterPro: IPR009303 This family consists of several hypothetical proteins from several species of bacteria. The function of this family is unknown.; PDB: 2R41_C.
Probab=24.96 E-value=60 Score=19.02 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=12.2
Q ss_pred ceeeEEEcCCCCeE
Q psy12898 43 SHTFKLVNKDNEPV 56 (64)
Q Consensus 43 vhtfk~vn~~G~~~ 56 (64)
+|.|+++|.+|+.+
T Consensus 37 l~~F~l~~~~~~l~ 50 (94)
T PF06124_consen 37 LQIFKLINNKGKLT 50 (94)
T ss_dssp EEEEEEEEETTEEE
T ss_pred eEEEEeEccCCeEE
Confidence 78999999999865
No 56
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=24.52 E-value=84 Score=22.36 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCchhHHHHHhcCc---hHHHHHHHHHhCCC
Q psy12898 3 QDWDAFWDFISLLP---ETTHQVMILFSDRG 30 (64)
Q Consensus 3 ~D~~~~~df~~~~P---es~~~~~~~~s~~g 30 (64)
.||+.+.+++.++| +++.|+.-++...|
T Consensus 24 ~Dp~~l~~ll~~~PyHidtLlqls~v~~~~g 54 (360)
T PF04910_consen 24 HDPNALINLLQKNPYHIDTLLQLSEVYRQQG 54 (360)
T ss_pred cCHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence 39999999999999 77777776654333
No 57
>PF07243 Phlebovirus_G1: Phlebovirus glycoprotein G1; InterPro: IPR010826 This domain is found in several Phlebovirus glycoprotein G1 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].; GO: 0016021 integral to membrane, 0019012 virion
Probab=24.48 E-value=84 Score=24.12 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=16.6
Q ss_pred ccceeeEEEcCCCCeEEEE
Q psy12898 41 YGSHTFKLVNKDNEPVYCK 59 (64)
Q Consensus 41 ~gvhtfk~vn~~G~~~~Vr 59 (64)
-|++++.++|.+||..-+|
T Consensus 95 ~g~~~~~yin~~GKl~~~k 113 (526)
T PF07243_consen 95 NGIRGVHYINDKGKLSHSK 113 (526)
T ss_pred CCceeEEEEcCCCCEeEEE
Confidence 4788999999999998876
No 58
>KOG4342|consensus
Probab=23.57 E-value=84 Score=25.45 Aligned_cols=28 Identities=14% Similarity=0.304 Sum_probs=25.6
Q ss_pred CCcCCCccccceeeEEEcCCCCeEEEEE
Q psy12898 33 DGFRHMHGYGSHTFKLVNKDNEPVYCKF 60 (64)
Q Consensus 33 ~s~~~~~~~gvhtfk~vn~~G~~~~Vr~ 60 (64)
-||.+.|.|--|||.|..-||....|.+
T Consensus 427 LSWNniNSFPhsTFnW~glDGSqvl~Hm 454 (1078)
T KOG4342|consen 427 LSWNNINSFPHSTFNWEGLDGSQVLVHM 454 (1078)
T ss_pred ccccccCcCCccceeeeeccCceEEEec
Confidence 4999999999999999999999988864
No 59
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=23.44 E-value=1.6e+02 Score=17.04 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=10.3
Q ss_pred eeEEEcCCCCeEE
Q psy12898 45 TFKLVNKDNEPVY 57 (64)
Q Consensus 45 tfk~vn~~G~~~~ 57 (64)
|..+++++|+...
T Consensus 102 t~~lid~~G~iv~ 114 (132)
T cd02964 102 TLVVLKPDGDVVT 114 (132)
T ss_pred EEEEECCCCCEEc
Confidence 7789999998653
No 60
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=22.76 E-value=1.8e+02 Score=17.38 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=13.2
Q ss_pred CCCCCcCCCccccceeeEEEcC
Q psy12898 30 GIPDGFRHMHGYGSHTFKLVNK 51 (64)
Q Consensus 30 g~P~s~~~~~~~gvhtfk~vn~ 51 (64)
|+|.| ..--|..|.+|++++.
T Consensus 34 ~~~~s-~t~Gg~~i~ayrI~~D 54 (100)
T PF06903_consen 34 GTPPS-KTRGGLRIDAYRITPD 54 (100)
T ss_pred CCCCc-ccCcccceeeEEEeCC
Confidence 44443 3336788888877765
No 61
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=22.42 E-value=98 Score=17.77 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=16.0
Q ss_pred CCCchhHHHHHhcCchHHHHHH
Q psy12898 2 LQDWDAFWDFISLLPETTHQVM 23 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~ 23 (64)
|||.+.+.+.....||..-++.
T Consensus 3 lp~FD~L~~LA~~dPe~fe~lr 24 (83)
T PF11333_consen 3 LPDFDELKELAQNDPEAFEQLR 24 (83)
T ss_pred CCCHHHHHHHHHhCHHHHHHHH
Confidence 6778887777888887765543
No 62
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=21.62 E-value=1.3e+02 Score=18.92 Aligned_cols=18 Identities=17% Similarity=0.423 Sum_probs=15.1
Q ss_pred cceeeEEEcCCCCeEEEE
Q psy12898 42 GSHTFKLVNKDNEPVYCK 59 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~Vr 59 (64)
.+|+|-+||+.|...|-|
T Consensus 2 ave~~~iINksGglifqr 19 (134)
T COG5122 2 AVEQFFIINKSGGLIFQR 19 (134)
T ss_pred ceeEEEEEecCCcEEEEE
Confidence 478999999999887755
No 63
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=21.50 E-value=52 Score=14.00 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=8.1
Q ss_pred hHHHHHhcCchH
Q psy12898 7 AFWDFISLLPET 18 (64)
Q Consensus 7 ~~~df~~~~Pes 18 (64)
.+..++..+|+|
T Consensus 22 ~~~~~~~~~P~s 33 (33)
T PF13174_consen 22 YFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHSTTS
T ss_pred HHHHHHHHCcCC
Confidence 356777777764
No 64
>KOG3545|consensus
Probab=21.48 E-value=1.4e+02 Score=20.79 Aligned_cols=36 Identities=11% Similarity=0.046 Sum_probs=28.6
Q ss_pred CCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 29 RGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 29 ~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
..+|.+|+.....=-+...+-|+.+....|||.+++
T Consensus 62 ~~lp~~~~gTg~VVynGs~yynk~~t~~ivky~l~~ 97 (249)
T KOG3545|consen 62 YRLPYSWDGTGHVVYNGSLYYNKAGTRNIIKYDLET 97 (249)
T ss_pred EeCCCCccccceEEEcceEEeeccCCcceEEEEeec
Confidence 467888888766666666777999999999999864
No 65
>PF02672 CP12: CP12 domain; InterPro: IPR003823 This entry represents an uncharacterised domain in proteins of unknown function. This domain is found associated with CBS domains in some proteins IPR000644 from INTERPRO.; PDB: 3B1K_I 3B1J_D 3RVD_N 3QV1_I 2LJ9_A.
Probab=21.15 E-value=41 Score=18.79 Aligned_cols=17 Identities=18% Similarity=0.144 Sum_probs=13.2
Q ss_pred CCchhHHHHHhcCchHH
Q psy12898 3 QDWDAFWDFISLLPETT 19 (64)
Q Consensus 3 ~D~~~~~df~~~~Pes~ 19 (64)
+|++.+..|...|||+.
T Consensus 48 ~~~~~lE~yC~~nPea~ 64 (71)
T PF02672_consen 48 KDKTPLELYCDENPEAD 64 (71)
T ss_dssp --TTCHHHHHHHSTTST
T ss_pred CCCCHHHHHHHHCCCcH
Confidence 47889999999999863
No 66
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=20.99 E-value=1.5e+02 Score=15.55 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=21.1
Q ss_pred hCCCCCCCcCCCccccceeeEEEcCCCCe
Q psy12898 27 SDRGIPDGFRHMHGYGSHTFKLVNKDNEP 55 (64)
Q Consensus 27 s~~g~P~s~~~~~~~gvhtfk~vn~~G~~ 55 (64)
...|+.-........+..++.+.+.+|..
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ 111 (114)
T cd07245 83 KAAGVPYTESDVPGDGVRQLFVRDPDGNR 111 (114)
T ss_pred HHcCCCcccccCCCCCccEEEEECCCCCE
Confidence 45777655555556777889999999974
No 67
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=20.88 E-value=35 Score=16.33 Aligned_cols=14 Identities=14% Similarity=0.207 Sum_probs=5.7
Q ss_pred CchhHHHHHhcCch
Q psy12898 4 DWDAFWDFISLLPE 17 (64)
Q Consensus 4 D~~~~~df~~~~Pe 17 (64)
||+.+..++..+|+
T Consensus 23 nP~~~~~~~~~nP~ 36 (41)
T smart00727 23 NPDMLAQMLQENPQ 36 (41)
T ss_pred CHHHHHHHHHhCHH
Confidence 34444444433443
No 68
>PF12581 DUF3756: Protein of unknown function (DUF3756); InterPro: IPR022230 This domain family is found in viruses, and is approximately 40 amino acids in length. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0070008 serine-type exopeptidase activity
Probab=20.77 E-value=60 Score=16.37 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=13.2
Q ss_pred HHHHHHHhCCCCCCCcC
Q psy12898 20 HQVMILFSDRGIPDGFR 36 (64)
Q Consensus 20 ~~~~~~~s~~g~P~s~~ 36 (64)
....|.+|..++|++|.
T Consensus 22 ~~aewalstepppaGY~ 38 (41)
T PF12581_consen 22 YAAEWALSTEPPPAGYA 38 (41)
T ss_pred eechhhhccCCCCcccc
Confidence 34568888889999885
No 69
>PF14327 CSTF2_hinge: Hinge domain of cleavage stimulation factor subunit 2; PDB: 4EBA_G.
Probab=20.58 E-value=1.4e+02 Score=16.80 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=13.9
Q ss_pred CCchhHHHHHhcCchHHHHHHHH
Q psy12898 3 QDWDAFWDFISLLPETTHQVMIL 25 (64)
Q Consensus 3 ~D~~~~~df~~~~Pes~~~~~~~ 25 (64)
.||+...+++.+||.-...+.-.
T Consensus 44 ~~p~~ar~lL~~nPqLa~Al~qa 66 (84)
T PF14327_consen 44 QNPEQARQLLQQNPQLAYALFQA 66 (84)
T ss_dssp ----HHHHHHHS-THHHHHHHHH
T ss_pred hCHHHHHHHHHHCcHHHHHHHHH
Confidence 58899999999999877655443
No 70
>PF00328 His_Phos_2: Histidine phosphatase superfamily (branch 2); InterPro: IPR000560 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated. Acid phosphatases (3.1.3.2 from EC) are a heterogeneous group of proteins that hydrolyse phosphate esters, optimally at low pH. It has been shown [] that a number of acid phosphatases, from both prokaryotes and eukaryotes, share two regions of sequence similarity, each centred around a conserved histidine residue. These two histidines seem to be involved in the enzymes' catalytic mechanism [, ]. The first histidine is located in the N-terminal section and forms a phosphohistidine intermediate while the second is located in the C-terminal section and possibly acts as proton donor. Enzymes belonging to this family are called 'histidine acid phosphatases' and include: Escherichia coli pH 2.5 acid phosphatase (gene appA). E. coli glucose-1-phosphatase (3.1.3.10 from EC) (gene agp). Yeast constitutive and repressible acid phosphatases (genes PHO3 and PHO5). Schizosaccharomyces pombe acid phosphatase (gene pho1). Aspergillus awamori phytases A and B (3.1.3.8 from EC) (gene phyA and phyB). Mammalian lysosomal and prostatic acid phosphatase. Several Caenorhabditis elegans hypothetical proteins. ; GO: 0003993 acid phosphatase activity; PDB: 1DKN_A 1DKQ_A 1DKL_B 1DKP_A 1DKM_A 1DKO_A 2GFI_B 3IT1_B 3IT0_B 3IT3_B ....
Probab=20.52 E-value=2.6e+02 Score=18.27 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=30.3
Q ss_pred hcCchHHHHHHHHHhCCCCCCCc-CCCccccce-eeEEEcCCCCeEEEEEEE
Q psy12898 13 SLLPETTHQVMILFSDRGIPDGF-RHMHGYGSH-TFKLVNKDNEPVYCKFHF 62 (64)
Q Consensus 13 ~~~Pes~~~~~~~~s~~g~P~s~-~~~~~~gvh-tfk~vn~~G~~~~Vr~~~ 62 (64)
+.|-+++..++-++.-..-..++ ....-||.| .|.+...+++..|||+.+
T Consensus 295 s~HD~tl~~ll~~Lgl~~~~~~~~~~~pp~as~l~fEl~~~~~~~~~Vr~~y 346 (347)
T PF00328_consen 295 SGHDTTLMPLLSALGLDNYSPPYQSYWPPYASNLVFELYRDSGKNYYVRVLY 346 (347)
T ss_dssp EE-HHHHHHHHHHTTCTTTSTTTHSSCSSTT-EEEEEEEEETTTEEEEEEEE
T ss_pred ecCHHHHHHHHHHhCCCccCccccCCCCCccceeEEEEEEeCCCcEEEEEEE
Confidence 34556666666554322222233 677889999 888887555559999864
No 71
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.51 E-value=1.2e+02 Score=16.78 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=33.6
Q ss_pred hcCchHHHHHHHHHhCCCCCCCcCCCccccc---eeeEEEcCCCC
Q psy12898 13 SLLPETTHQVMILFSDRGIPDGFRHMHGYGS---HTFKLVNKDNE 54 (64)
Q Consensus 13 ~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gv---htfk~vn~~G~ 54 (64)
..+|--++.+.-.+.+.|+--..++...+|- .+|..++.+|+
T Consensus 9 ~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~ 53 (72)
T cd04895 9 ARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGN 53 (72)
T ss_pred CCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCC
Confidence 3578888888888888999877777777764 48989888876
No 72
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=20.18 E-value=2.1e+02 Score=17.18 Aligned_cols=42 Identities=26% Similarity=0.256 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCcCCC--ccccceeeEEEcCCCCeEEEEEEE
Q psy12898 18 TTHQVMILFSDRGIPDGFRHM--HGYGSHTFKLVNKDNEPVYCKFHF 62 (64)
Q Consensus 18 s~~~~~~~~s~~g~P~s~~~~--~~~gvhtfk~vn~~G~~~~Vr~~~ 62 (64)
+..++..++ |.|.+=..+ .-...+.|.+.+.+|+.+..-..|
T Consensus 41 Tr~qV~~~l---GtP~~~~~~~~~~~t~w~Yv~~~~~g~~~~~tV~F 84 (109)
T PRK11251 41 TRQQVAQIA---GKPSSEVSMIHARGTCQTYILGNRDGKAQTYFVSF 84 (109)
T ss_pred CHHHHHHHc---CCCCccceeecCCCcceeEEEecCCCceEEEEEEE
Confidence 556777664 788754333 446678899999988876554443
Done!