Query psy12898
Match_columns 64
No_of_seqs 108 out of 923
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:34:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e4w_A Putative uncharacterize 99.9 1.3E-25 4.4E-30 155.0 3.9 63 2-64 131-193 (320)
2 2isa_A Catalase; peroxidase, h 99.9 3.9E-25 1.3E-29 159.1 6.3 63 2-64 154-216 (483)
3 1m7s_A Catalase; beta barrel, 99.9 4.6E-25 1.6E-29 158.8 6.3 63 2-64 152-214 (484)
4 1gwe_A Catalase; oxidoreductas 99.9 4.8E-25 1.6E-29 159.3 6.2 63 2-64 161-223 (503)
5 1dgf_A Catalase; heme, NADPH, 99.9 4.9E-25 1.7E-29 159.0 6.0 63 2-64 172-234 (497)
6 1si8_A Catalase; N-terminal AR 99.9 5.6E-25 1.9E-29 158.3 6.2 63 2-64 155-217 (484)
7 2j2m_A Catalase; functional cl 99.9 5.1E-25 1.8E-29 158.7 5.7 63 2-64 157-219 (491)
8 3ttv_A Catalase HPII; heme ori 99.9 5.2E-25 1.8E-29 164.4 5.9 60 5-64 236-295 (753)
9 3ej6_A Catalase-3; heme, hydro 99.9 6.7E-25 2.3E-29 162.7 6.3 60 5-64 179-238 (688)
10 1qwl_A KATA catalase; beta bar 99.9 7.1E-25 2.4E-29 158.4 6.1 63 2-64 157-219 (505)
11 2xq1_A Peroxisomal catalase; o 99.9 8.4E-25 2.9E-29 158.2 6.1 63 2-64 168-230 (509)
12 1a4e_A Catalase A; oxidoreduct 99.9 8.3E-25 2.9E-29 157.6 5.8 63 2-64 157-221 (488)
13 2iuf_A Catalase; oxidoreductas 99.9 1.1E-23 3.9E-28 156.2 6.3 60 5-64 171-230 (688)
14 1sy7_A Catalase 1; heme oxidat 99.9 2.3E-23 7.8E-28 154.9 5.8 60 5-64 179-238 (715)
15 1u5u_A Allene oxide synthase-l 99.8 3.3E-21 1.1E-25 135.2 5.6 58 5-64 159-216 (374)
16 3dy5_A Allene oxide synthase-l 99.8 2.9E-20 1E-24 142.6 5.9 59 4-64 158-216 (1066)
17 3tjz_C Coatomer subunit zeta-1 65.1 7 0.00024 23.7 3.3 24 38-61 8-31 (153)
18 3f7w_A Putative fructosamine-3 59.3 8.5 0.00029 24.3 3.0 22 39-60 25-46 (288)
19 1pgj_A 6PGDH, 6-PGDH, 6-phosph 57.7 1.2 4E-05 31.4 -1.4 18 38-55 453-470 (478)
20 2iz1_A 6-phosphogluconate dehy 55.6 1.2 3.9E-05 31.3 -1.7 19 38-56 449-467 (474)
21 2zyd_A 6-phosphogluconate dehy 50.7 1.6 5.4E-05 30.8 -1.6 19 38-56 457-475 (480)
22 1i5g_A Tryparedoxin II; electr 50.5 30 0.001 19.0 5.5 14 44-57 110-124 (144)
23 4gwg_A 6-phosphogluconate dehy 47.8 2 6.9E-05 30.6 -1.4 16 39-54 449-464 (484)
24 1o8x_A Tryparedoxin, TRYX, TXN 47.6 34 0.0012 18.8 5.5 13 45-57 111-124 (146)
25 1b69_A Protein (integrase); in 44.4 19 0.00066 19.4 2.5 16 44-59 23-38 (69)
26 2pgd_A 6-phosphogluconate dehy 44.0 2.6 8.8E-05 29.5 -1.4 18 37-54 445-462 (482)
27 3h9w_A Diguanylate cyclase wit 41.6 35 0.0012 17.3 3.6 18 45-62 69-86 (115)
28 3euj_B Chromosome partition pr 39.2 11 0.00038 23.4 1.1 47 7-53 91-139 (152)
29 1o73_A Tryparedoxin; electron 38.4 48 0.0016 17.9 5.7 13 45-57 111-124 (144)
30 2p4q_A 6-phosphogluconate dehy 38.0 4.3 0.00015 28.8 -1.0 19 38-56 454-480 (497)
31 2vgl_S AP-2 complex subunit si 37.7 34 0.0012 19.9 3.1 19 43-61 2-20 (142)
32 2k7r_A Primosomal protein DNAI 37.4 13 0.00044 21.0 1.1 50 2-53 29-92 (106)
33 3b1j_C CP12; alpha/beta fold, 34.9 13 0.00044 16.4 0.7 16 4-19 3-18 (26)
34 4gbs_A Putative lipoprotein; P 34.8 32 0.0011 21.1 2.8 21 42-64 159-179 (200)
35 3f1p_B ARYL hydrocarbon recept 34.3 50 0.0017 16.9 3.6 19 44-62 76-94 (121)
36 3nk4_A ZONA pellucida 3; ferti 34.3 32 0.0011 22.4 2.8 29 34-62 219-247 (297)
37 1w63_Q Adapter-related protein 33.6 44 0.0015 19.9 3.2 19 43-61 2-20 (158)
38 3f1p_A Endothelial PAS domain- 30.4 58 0.002 16.4 3.5 18 45-62 73-90 (117)
39 2kdk_A ARYL hydrocarbon recept 27.8 65 0.0022 16.2 3.6 18 45-62 78-95 (121)
40 2ggt_A SCO1 protein homolog, m 26.9 85 0.0029 17.2 3.8 14 45-58 129-142 (164)
41 3ia1_A THIO-disulfide isomeras 25.5 89 0.003 17.0 3.5 17 42-58 109-125 (154)
42 3tw8_A DENN domain-containing 25.4 50 0.0017 22.8 2.7 16 43-58 69-84 (391)
43 2j3w_A Sedlin, trafficking pro 24.7 74 0.0025 18.6 3.1 18 42-59 5-22 (142)
44 2r39_A FIXG-related protein; s 24.7 86 0.0029 17.5 3.3 19 45-63 36-54 (118)
45 1q42_A MTR2, mRNA transport re 24.4 1.1 3.9E-05 29.1 -5.4 42 5-57 88-129 (201)
46 2kzk_A Uncharacterized protein 23.6 57 0.0019 18.8 2.3 17 42-58 76-92 (107)
47 3rtl_A Iron-regulated surface 23.0 64 0.0022 19.0 2.5 30 33-63 20-49 (121)
48 2ipq_X Hypothetical protein ST 22.5 1.3E+02 0.0045 17.9 6.2 55 2-59 42-107 (135)
49 2kzb_A Autophagy-related prote 22.4 69 0.0024 18.7 2.5 18 42-59 82-99 (118)
50 3icy_A Sensor protein; sensory 21.7 84 0.0029 15.4 3.6 18 45-62 80-97 (118)
51 2kp6_A Uncharacterized protein 21.6 34 0.0012 19.1 1.0 13 4-16 23-35 (82)
52 1yd6_A UVRC; DNA binding prote 21.1 74 0.0025 17.8 2.4 15 45-59 18-32 (99)
53 2lj9_A CP12 domain-containing 20.1 35 0.0012 19.7 0.9 16 4-19 77-92 (99)
No 1
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase, peroxidase, oxidoreductase; HET: HEM; 1.80A {Mycobacterium avium subsp} PDB: 3e4y_A*
Probab=99.91 E-value=1.3e-25 Score=155.01 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=61.0
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.+||++||++|+++++|+|+||++|+|||+|||+|+|++|+.+||||||++
T Consensus 131 ~~d~~~~~df~~~~Pes~h~~~~l~s~rg~p~s~~~~~~~s~htf~~~n~~G~~~~vK~~~~p 193 (320)
T 3e4w_A 131 LTTPLRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSARFVRYHLVP 193 (320)
T ss_dssp TTHHHHHHHHHHHCHHHHTTHHHHHHHTCEESCGGGSCEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhCHhHHHHHHHHhccCCCCCCcccCCccccccEEEEcCCCCEEEEEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999984
No 2
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB: 1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A* 1h6n_A* 3hb6_A*
Probab=99.91 E-value=3.9e-25 Score=159.11 Aligned_cols=63 Identities=54% Similarity=1.007 Sum_probs=61.4
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.+||++||++|+++++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 154 ~~d~~~~~df~s~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~htf~~vn~~G~~~~VK~h~~P 216 (483)
T 2isa_A 154 MRSAKNNWDFWTSLPEALHQVTIVMSDRGIPATYRHMHGFGSHTFSFINSDNERYWVKFHFVS 216 (483)
T ss_dssp SBCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSSGGGSCEECCSCEEEECTTCCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhChhHhhHHHHhhccCCCCCCcccccccccCceeEEcCCCCEEEEEEEEEe
Confidence 679999999999999999999999999999999999999999999999999999999999984
No 3
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET: HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Probab=99.91 E-value=4.6e-25 Score=158.77 Aligned_cols=63 Identities=41% Similarity=0.803 Sum_probs=61.3
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.+||++||++|++|++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 152 ~~d~~~~~df~s~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~htf~~vn~~G~~~~VK~h~~P 214 (484)
T 1m7s_A 152 LDNDSRRFDFFSHVPEATRTLTLLYSNEGTPAGYRFMDGNGVHAYKLVNAKGEVHYVKFHWKS 214 (484)
T ss_dssp SCCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEEECTTSCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhChhHhhHHHHhhccCCCCCccccccccccCceeeEcCCCCEEEEEEEEEe
Confidence 678999999999999999999999999999999999999999999999999999999999984
No 4
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus} SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Probab=99.91 E-value=4.8e-25 Score=159.26 Aligned_cols=63 Identities=44% Similarity=0.810 Sum_probs=61.4
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.+||++||++|+++++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 161 ~~d~~~~wdf~s~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~htf~~vn~~G~~~~VKfh~~P 223 (503)
T 1gwe_A 161 LRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYHFIS 223 (503)
T ss_dssp CBCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEEECTTCCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhChhhhhHHHHhhccCCCCCCcccccccccCceEEEcCCCCEEEEEEEEEe
Confidence 679999999999999999999999999999999999999999999999999999999999984
No 5
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A* 1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A* 3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A* 8cat_A*
Probab=99.91 E-value=4.9e-25 Score=159.02 Aligned_cols=63 Identities=70% Similarity=1.240 Sum_probs=61.3
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.+||++||++|+++++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 172 ~~d~~~~wdf~s~~PEs~h~~~~l~sdrg~P~s~r~m~g~g~htf~~vn~~G~~~~VKfh~~P 234 (497)
T 1dgf_A 172 LKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFHYKT 234 (497)
T ss_dssp SBCHHHHHHHHHHCGGGHHHHHHHTSGGGSBSSSTTSCEECCSCEEEECTTSCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhCchhhhHHHHHhccCCCCCCccccccccccceEEEcCCCCEEEEEEEEEe
Confidence 679999999999999999999999999999999999999999999999999999999999984
No 6
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping region, terminal helical region, tetramer, heme group, oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis} SCOP: e.5.1.1
Probab=99.91 E-value=5.6e-25 Score=158.32 Aligned_cols=63 Identities=59% Similarity=1.013 Sum_probs=61.4
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.+||++||++|+++++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 155 ~~d~~~~wdf~s~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~htf~~vn~~G~~~~VK~h~~P 217 (484)
T 1si8_A 155 LKSPEAVWDFWSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKT 217 (484)
T ss_dssp SBCHHHHHHHHHTCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEEECTTCCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhCchhHHHHHHHhccCCCCCCcccccccccCceEEEcCCCCEEEEEEEEEe
Confidence 679999999999999999999999999999999999999999999999999999999999984
No 7
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A {Exiguobacterium oxidotolerans}
Probab=99.91 E-value=5.1e-25 Score=158.75 Aligned_cols=63 Identities=43% Similarity=0.859 Sum_probs=61.4
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.+||++|+++|+++++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 157 ~~d~~~~wdf~s~~Pes~h~~~~l~sdrg~P~syr~m~g~g~htf~~vn~~G~~~~VK~h~~P 219 (491)
T 2j2m_A 157 IQDPDRYWDFMTLRPESTNMLMHIFTDEGIPASYRKMRGSSVHSFKWVNAHGNTVYIKLRWVP 219 (491)
T ss_dssp SCCHHHHHHHHHHSGGGHHHHHHHTSGGGSBSCGGGCCEECCSCEEEECTTCCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhCchHHhHHHHHhccCCCCCChhhccCccccceeeEcCCCCEEEEEEEEEe
Confidence 679999999999999999999999999999999999999999999999999999999999984
No 8
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=99.91 E-value=5.2e-25 Score=164.44 Aligned_cols=60 Identities=48% Similarity=1.051 Sum_probs=58.4
Q ss_pred chhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 5 WDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 5 ~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++++|||++.|||++||++|++|+||+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 236 ~~~~wdF~s~~PEs~h~~~~l~sdrg~P~Syr~m~g~g~htf~~vn~~G~~~~VKfh~~p 295 (753)
T 3ttv_A 236 HDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWKP 295 (753)
T ss_dssp SHHHHHHHHHCGGGHHHHHHHHSGGGSBSCGGGSCEECCSCEEEECTTCCEEEEEEEEEE
T ss_pred hHHHHHHHHhCHHHHHHHHHHhccCCCCCCcccCCcccccceEEEcCCCCEEEEEEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999984
No 9
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=99.91 E-value=6.7e-25 Score=162.73 Aligned_cols=60 Identities=40% Similarity=0.847 Sum_probs=58.1
Q ss_pred chhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 5 WDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 5 ~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++++|||++.|||++||++|++|++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 179 ~~~~wdF~s~~PEs~h~~~~l~sdrg~P~Syr~m~g~g~htf~~vn~~G~~~~VKfh~~p 238 (688)
T 3ej6_A 179 HDSAWDFFSSQPSALHTLFWAMSGNGIPRSYRHMDGFGIHTFRLVTEDGKSKLVKWHWKT 238 (688)
T ss_dssp SHHHHHHHHHSGGGHHHHHHHHSGGGSBSCSTTCCEECCSCEEEECTTSCEEEEEEEEEE
T ss_pred hhHHHHHHHhChhhHHHHHHHhccCCCCCCcccCCcccccceEEEeCCCCEEEEEEEEEE
Confidence 378999999999999999999999999999999999999999999999999999999984
No 10
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex, oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori} SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Probab=99.91 E-value=7.1e-25 Score=158.41 Aligned_cols=63 Identities=52% Similarity=0.962 Sum_probs=61.4
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.+||++||++|+++++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 157 ~~d~~~~wdf~s~~PEs~h~~~~l~sdrg~P~syr~m~g~g~htf~~vn~~G~~~~VKfh~~P 219 (505)
T 1qwl_A 157 LPNHDMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFHT 219 (505)
T ss_dssp SCCHHHHHHHHHHCGGGHHHHHHHHSGGGSBSSGGGSCEECCSCEEEECTTCCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhChhHHHHHHHHhccCCCCCCcccccccccCceeEEcCCCCEEEEEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999984
No 11
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Probab=99.91 E-value=8.4e-25 Score=158.15 Aligned_cols=63 Identities=46% Similarity=0.858 Sum_probs=61.3
Q ss_pred CCCchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++.+||++||++|+++++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 168 ~~d~~~~~df~s~~Pes~h~~~~l~sdrg~P~syr~m~g~g~htf~~vn~~G~~~~VKfh~~P 230 (509)
T 2xq1_A 168 LKDPNMFWDYLTANDESLHQVMYLFSNRGTPASYRTMNGYSGHTYKWYNSKGEWVYVQVHFIA 230 (509)
T ss_dssp SBCHHHHHHHHHHSGGGHHHHHHHHSGGGSBSCSTTCCEECCSCEEEECTTSCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHhChhhhhhHHHhhccCCCCCChhhccCccccceeeecCCCCEEEEEEEEEe
Confidence 678999999999999999999999999999999999999999999999999999999999984
No 12
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A {Saccharomyces cerevisiae} SCOP: e.5.1.1
Probab=99.90 E-value=8.3e-25 Score=157.56 Aligned_cols=63 Identities=49% Similarity=0.913 Sum_probs=61.3
Q ss_pred CCCchhHHHHHhc--CchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 2 LQDWDAFWDFISL--LPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 2 l~D~~~~~df~~~--~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++||+++|||++. +||++||++|+++++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 157 ~~d~~~~wdf~s~~~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~htf~~vn~~G~~~~VKfh~~P 221 (488)
T 1a4e_A 157 LRDADMFWDFLTTPENQVAIHQVMILFSDRGTPANYRSMHGYSGHTYKWSNKNGDWHYVQVHIKT 221 (488)
T ss_dssp SCCHHHHHHHHTSGGGGGGHHHHHHHHSGGGSBSCGGGCCEECCSCEEEECTTSCEEEEEEEEEE
T ss_pred CCCHHHHHHHHhccCChHHhhHHHHhhccCCCCCCccccccccccceEEEcCCCCEEEEEEEEEE
Confidence 6789999999999 99999999999999999999999999999999999999999999999984
No 13
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=99.89 E-value=1.1e-23 Score=156.20 Aligned_cols=60 Identities=40% Similarity=0.854 Sum_probs=58.2
Q ss_pred chhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 5 WDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 5 ~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++++|||++.+||++||++|++|++|+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 171 ~~~~~df~s~~Pes~h~~~~l~sdrg~P~s~r~m~g~g~htf~~vn~~G~~~~VKfh~~P 230 (688)
T 2iuf_A 171 HDSAWDFFSQQPSVLHTLLWAXAGHGIPRSFRHVNGFGVHTFRLVTDDGKTKLVKFHWKG 230 (688)
T ss_dssp SHHHHHHHHHSGGGHHHHHHHHTGGGSBSCGGGCCEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred HHHHHHHHHhCcchHHHHHHHccCCCCCCCcccCCcccccceEEEccCCCEEEEEEEEEe
Confidence 479999999999999999999999999999999999999999999999999999999984
No 14
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=99.88 E-value=2.3e-23 Score=154.95 Aligned_cols=60 Identities=37% Similarity=0.721 Sum_probs=58.3
Q ss_pred chhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 5 WDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 5 ~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
++++|||++.+||++||++|++|+||+|+|||+|+|||+|||+|||++|+.+||||||++
T Consensus 179 ~~~~~df~~~~Pes~h~~~~~~sdr~~p~s~r~m~~~g~htf~~vn~~G~~~~vk~~~~p 238 (715)
T 1sy7_A 179 HNNFWDFQFNHTEATHMFTWAMSDRAIPRSLRMMQGFGVNTYTLINAQGKRHFVKFHWTP 238 (715)
T ss_dssp SHHHHHHHHHCGGGHHHHHHHTSGGGSBSCGGGSCEECCSCEEEECTTSCEEEEEEEEEE
T ss_pred hhHHHHHHhhCchhHHHHHHhccCCCCCcccccccccccCCceeEcCCCcEEEEEeeEEc
Confidence 489999999999999999999999999999999999999999999999999999999984
No 15
>1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme, eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura homomalla} SCOP: e.5.1.2
Probab=99.83 E-value=3.3e-21 Score=135.24 Aligned_cols=58 Identities=24% Similarity=0.338 Sum_probs=55.3
Q ss_pred chhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 5 WDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 5 ~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
|+++|||++.+||+++++ ++++||+|.||++|+|||+|||+|+|++|+.+||||||++
T Consensus 159 p~~~~df~~~~Pes~~~~--l~s~r~~P~s~~~~~y~s~htf~~vn~~G~~~~vK~~~~P 216 (374)
T 1u5u_A 159 GDAAEEYVYKNPYYYYNL--VEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALP 216 (374)
T ss_dssp THHHHHHHTTCHHHHHHH--HHHCEESCSCGGGCCEECCSCEEEECTTCCEEEEEEEEEE
T ss_pred hHHHHHHHhhCHHHHHHH--HhCcCCCCCCcccCCccccceEEEECCCCCEEEEEEEEEe
Confidence 689999999999999987 7799999999999999999999999999999999999984
No 16
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla}
Probab=99.80 E-value=2.9e-20 Score=142.61 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=56.5
Q ss_pred CchhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEEEEEEEeC
Q psy12898 4 DWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 4 D~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
.|+++|||++.|||+ +++|+++++|+|+|||+|+|||+|||+|+|++|+.+||||||++
T Consensus 158 kp~~~~df~~~~Pes--~~~~l~sdr~~P~s~~~m~~~s~htf~~~n~~G~~~~VKf~~~P 216 (1066)
T 3dy5_A 158 EGDAAEEYVYKNPYY--YYNLVEALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRALP 216 (1066)
T ss_dssp TTHHHHHHHTSSHHH--HHTHHHHBCSSCSCGGGCCEECCSCEEEECTTCCEEEEEEEEEE
T ss_pred CchHHHHHHhhCcHH--HHHHHhccCCCCCCcccCCcccccceEEEcCCCCEEEEEEEEEE
Confidence 368999999999999 89999999999999999999999999999999999999999984
No 17
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=65.11 E-value=7 Score=23.66 Aligned_cols=24 Identities=13% Similarity=0.373 Sum_probs=21.3
Q ss_pred CccccceeeEEEcCCCCeEEEEEE
Q psy12898 38 MHGYGSHTFKLVNKDNEPVYCKFH 61 (64)
Q Consensus 38 ~~~~gvhtfk~vn~~G~~~~Vr~~ 61 (64)
..-|.|+++-+.|.+|+....||.
T Consensus 8 ~sl~mI~~ililn~~Gk~~lsK~Y 31 (153)
T 3tjz_C 8 PSLYTVKAILILDNDGDRLFAKYY 31 (153)
T ss_dssp CCSBCEEEEEEECTTSCEEEEEEC
T ss_pred ccHHHheEEEEECCCCCEEEEEeC
Confidence 456789999999999999999984
No 18
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=59.28 E-value=8.5 Score=24.26 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.3
Q ss_pred ccccceeeEEEcCCCCeEEEEE
Q psy12898 39 HGYGSHTFKLVNKDNEPVYCKF 60 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G~~~~Vr~ 60 (64)
.|.+..+|++..+||+..+||.
T Consensus 25 ~G~~~~vyrv~l~DG~~~~vK~ 46 (288)
T 3f7w_A 25 HSHRWHLYRVELADGTPLFVKA 46 (288)
T ss_dssp EETTEEEEEEEETTSCEEEEEE
T ss_pred CCCCeEEEEEEECCCCEEEEEE
Confidence 4677789999999999999996
No 19
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=57.74 E-value=1.2 Score=31.39 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=15.6
Q ss_pred CccccceeeEEEcCCCCe
Q psy12898 38 MHGYGSHTFKLVNKDNEP 55 (64)
Q Consensus 38 ~~~~gvhtfk~vn~~G~~ 55 (64)
-+|||-|||.-++++|..
T Consensus 453 rd~fg~h~~~~~~~~~~~ 470 (478)
T 1pgj_A 453 RDVFGRHGYERVDKDGRE 470 (478)
T ss_dssp HHHHHCCCEEBSSSSSEE
T ss_pred HHhccCceeeecCCCCce
Confidence 479999999999999843
No 20
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=55.58 E-value=1.2 Score=31.28 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.2
Q ss_pred CccccceeeEEEcCCCCeE
Q psy12898 38 MHGYGSHTFKLVNKDNEPV 56 (64)
Q Consensus 38 ~~~~gvhtfk~vn~~G~~~ 56 (64)
-++||.|||+-++++|..+
T Consensus 449 rd~fg~h~~~r~~~~~~~h 467 (474)
T 2iz1_A 449 RDYFGAHTYERTDKAGIFH 467 (474)
T ss_dssp HHHHHCCCBCBSSSSSCBC
T ss_pred HHhcCCccceecCCCCeee
Confidence 4799999999999998554
No 21
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=50.70 E-value=1.6 Score=30.81 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.2
Q ss_pred CccccceeeEEEcCCCCeE
Q psy12898 38 MHGYGSHTFKLVNKDNEPV 56 (64)
Q Consensus 38 ~~~~gvhtfk~vn~~G~~~ 56 (64)
-++||.|||+-++++|..+
T Consensus 457 Rd~FG~H~~~r~~~~~~~h 475 (480)
T 2zyd_A 457 RDYFGAHTYKRIDKEGVFH 475 (480)
T ss_dssp HHHHHCCCBCBSSSCSCBC
T ss_pred HHhcCCCcceecCCCCccc
Confidence 4799999999999998554
No 22
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=50.49 E-value=30 Score=18.97 Aligned_cols=14 Identities=14% Similarity=0.062 Sum_probs=11.2
Q ss_pred eeeEEEc-CCCCeEE
Q psy12898 44 HTFKLVN-KDNEPVY 57 (64)
Q Consensus 44 htfk~vn-~~G~~~~ 57 (64)
=|+-+++ ++|+..+
T Consensus 110 P~~~lid~~~G~i~~ 124 (144)
T 1i5g_A 110 PTLVGVEADSGNIIT 124 (144)
T ss_dssp SEEEEEETTTCCEEE
T ss_pred CEEEEEECCCCcEEe
Confidence 3788999 8998754
No 23
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A
Probab=47.85 E-value=2 Score=30.60 Aligned_cols=16 Identities=31% Similarity=0.711 Sum_probs=14.7
Q ss_pred ccccceeeEEEcCCCC
Q psy12898 39 HGYGSHTFKLVNKDNE 54 (64)
Q Consensus 39 ~~~gvhtfk~vn~~G~ 54 (64)
++||.|||+-++++|+
T Consensus 449 d~FGaH~~~r~d~~g~ 464 (484)
T 4gwg_A 449 DYFGAHTYELLAKPGQ 464 (484)
T ss_dssp HHHHCCCEEETTEEEE
T ss_pred HhhCCcceEecCCCCC
Confidence 8999999999998885
No 24
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=47.64 E-value=34 Score=18.82 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=10.8
Q ss_pred eeEEEc-CCCCeEE
Q psy12898 45 TFKLVN-KDNEPVY 57 (64)
Q Consensus 45 tfk~vn-~~G~~~~ 57 (64)
|+-+++ ++|+..+
T Consensus 111 t~~lid~~~G~i~~ 124 (146)
T 1o8x_A 111 TLIGVDADSGDVVT 124 (146)
T ss_dssp EEEEEETTTCCEEE
T ss_pred EEEEEECCCCeEEE
Confidence 788999 8998754
No 25
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=44.43 E-value=19 Score=19.44 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.4
Q ss_pred eeeEEEcCCCCeEEEE
Q psy12898 44 HTFKLVNKDNEPVYCK 59 (64)
Q Consensus 44 htfk~vn~~G~~~~Vr 59 (64)
=.|+++++.|+.++|=
T Consensus 23 Y~yry~d~~Gkr~~vY 38 (69)
T 1b69_A 23 YLYKYIDSFGEPQFVY 38 (69)
T ss_dssp EEEEEECTTSSEEEEE
T ss_pred EEEEEEcCCCCEEEEE
Confidence 4679999999998873
No 26
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=44.02 E-value=2.6 Score=29.55 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=15.4
Q ss_pred CCccccceeeEEEcCCCC
Q psy12898 37 HMHGYGSHTFKLVNKDNE 54 (64)
Q Consensus 37 ~~~~~gvhtfk~vn~~G~ 54 (64)
.-++||.|||+-++++|+
T Consensus 445 ~rd~fG~h~~~r~~~~~~ 462 (482)
T 2pgd_A 445 QRDYFGAHTYELLAKPGQ 462 (482)
T ss_dssp HHHHHHCCCBCCSSSTTC
T ss_pred HHhhcCCceeeecCCCCC
Confidence 347999999999999884
No 27
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=41.59 E-value=35 Score=17.32 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=14.9
Q ss_pred eeEEEcCCCCeEEEEEEE
Q psy12898 45 TFKLVNKDNEPVYCKFHF 62 (64)
Q Consensus 45 tfk~vn~~G~~~~Vr~~~ 62 (64)
-|+++.++|+..+|+.+.
T Consensus 69 e~r~~~~dG~~~w~~~~~ 86 (115)
T 3h9w_A 69 DYRALHRDGHYVWIRDVV 86 (115)
T ss_dssp EEEEECTTSCEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEEE
Confidence 688999999998887654
No 28
>3euj_B Chromosome partition protein MUKF; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_E*
Probab=39.23 E-value=11 Score=23.36 Aligned_cols=47 Identities=9% Similarity=0.183 Sum_probs=26.6
Q ss_pred hHHHHHhcCchHHHHHH-HHHhCCCCCCCcCCCccccce-eeEEEcCCC
Q psy12898 7 AFWDFISLLPETTHQVM-ILFSDRGIPDGFRHMHGYGSH-TFKLVNKDN 53 (64)
Q Consensus 7 ~~~df~~~~Pes~~~~~-~~~s~~g~P~s~~~~~~~gvh-tfk~vn~~G 53 (64)
-+.||++++|.+.||-. .+.-|..+--|++..++-|+. -..-||+-|
T Consensus 91 VLrdyL~~yP~~~HFDvARivVDQAVrLG~a~~D~~~~~p~Wq~INd~G 139 (152)
T 3euj_B 91 VLQEQLARYPQSRHFDVARIIVDQAVKLGMASQDHQAVYPVWQPIDDFS 139 (152)
T ss_dssp HHHHHTTTSCGGGHHHHHHHHHHHHHHTCCCSGGGGTCCCCCEEETTTT
T ss_pred HHHHHHHhCcHhhhhhHHHHHHHHHHHhccchhhhccCCccchhHhhcc
Confidence 36799999999999832 222233333344444444444 344455554
No 29
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=38.43 E-value=48 Score=17.94 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=10.7
Q ss_pred eeEEEc-CCCCeEE
Q psy12898 45 TFKLVN-KDNEPVY 57 (64)
Q Consensus 45 tfk~vn-~~G~~~~ 57 (64)
|+-+++ ++|+..+
T Consensus 111 t~~lid~~~G~i~~ 124 (144)
T 1o73_A 111 TLITINADTGAIIG 124 (144)
T ss_dssp EEEEEETTTCCEEE
T ss_pred EEEEEECCCCeEEe
Confidence 788999 8998764
No 30
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=37.96 E-value=4.3 Score=28.80 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=15.2
Q ss_pred CccccceeeEEE--------cCCCCeE
Q psy12898 38 MHGYGSHTFKLV--------NKDNEPV 56 (64)
Q Consensus 38 ~~~~gvhtfk~v--------n~~G~~~ 56 (64)
-++||.|||+-+ +++|..+
T Consensus 454 Rd~FG~H~~~r~~~~~~~~~~~~~~~h 480 (497)
T 2p4q_A 454 RDYFGAHTFRVLPECASDNLPVDKDIH 480 (497)
T ss_dssp HHHHSCCCBCCCGGGCCSSSCTTSCBC
T ss_pred HHhcCCcceeeccccccccCCCCCeee
Confidence 479999999999 7777543
No 31
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=37.71 E-value=34 Score=19.88 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=16.9
Q ss_pred ceeeEEEcCCCCeEEEEEE
Q psy12898 43 SHTFKLVNKDNEPVYCKFH 61 (64)
Q Consensus 43 vhtfk~vn~~G~~~~Vr~~ 61 (64)
|+++-+.|.+|+....||.
T Consensus 2 I~~i~i~~~~Gk~~l~k~y 20 (142)
T 2vgl_S 2 IRFILIQNRAGKTRLAKWY 20 (142)
T ss_dssp EEEEEEEETTSCEEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEeC
Confidence 6788899999999999984
No 32
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=37.43 E-value=13 Score=21.03 Aligned_cols=50 Identities=14% Similarity=0.039 Sum_probs=29.6
Q ss_pred CCCchhHHHHHhcCch----------HHHHHHHHHhCCCCCCCcC---C-CccccceeeEEEcCCC
Q psy12898 2 LQDWDAFWDFISLLPE----------TTHQVMILFSDRGIPDGFR---H-MHGYGSHTFKLVNKDN 53 (64)
Q Consensus 2 l~D~~~~~df~~~~Pe----------s~~~~~~~~s~~g~P~s~~---~-~~~~gvhtfk~vn~~G 53 (64)
|.||+ +.+|+..||+ ......|+-..... .+.. . -+-.-+|.-+++-.+|
T Consensus 29 l~dP~-V~~Fl~~h~~~l~~~~I~~s~~kL~ey~~e~~~c-~~~~gl~~C~~~~kGy~p~L~~~~g 92 (106)
T 2k7r_A 29 MKDQD-VQAFLKENEEVIDQKMIEKSLNKLYEYIEQSKNC-SYCSEDENCNNLLEGYHPKLVVNGR 92 (106)
T ss_dssp TTCHH-HHHHHHHSTTTCCHHHHHHTHHHHHHHHHSCSSC-TTTSCCTTSCCSSTTEEEEEEEETT
T ss_pred HcCHH-HHHHHHHChhhCCHHHHHhhHHHHHHHHHHHHhh-ccCcccccCCCcCCCcccEEEecCC
Confidence 56777 8999999995 34556666433333 2222 3 3335666666666544
No 33
>3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*
Probab=34.85 E-value=13 Score=16.40 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=12.9
Q ss_pred CchhHHHHHhcCchHH
Q psy12898 4 DWDAFWDFISLLPETT 19 (64)
Q Consensus 4 D~~~~~df~~~~Pes~ 19 (64)
+++++..|...|||+.
T Consensus 3 ~~t~lE~yC~enPea~ 18 (26)
T 3b1j_C 3 TEPFFGDYCSENPDAA 18 (26)
T ss_dssp -CTTHHHHHHHCTTST
T ss_pred cccHHHHHHHHCCCcH
Confidence 5778999999999874
No 34
>4gbs_A Putative lipoprotein; PF14064 family, transport, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MLY; 2.48A {Bacteroides fragilis}
Probab=34.83 E-value=32 Score=21.10 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=15.5
Q ss_pred cceeeEEEcCCCCeEEEEEEEeC
Q psy12898 42 GSHTFKLVNKDNEPVYCKFHFRQ 64 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~Vr~~~~~ 64 (64)
..|.|-+..+||+ |+|+++.+
T Consensus 159 ~~~vyVirtadG~--YaKlq~~s 179 (200)
T 4gbs_A 159 SNXVYLLRMXDDT--MAAIRLVS 179 (200)
T ss_dssp CCCCEEEECTTSC--EEEEEEEE
T ss_pred CCcEEEEEeCCCC--EEEEEEEE
Confidence 3467888888886 78887753
No 35
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=34.34 E-value=50 Score=16.89 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=15.7
Q ss_pred eeeEEEcCCCCeEEEEEEE
Q psy12898 44 HTFKLVNKDNEPVYCKFHF 62 (64)
Q Consensus 44 htfk~vn~~G~~~~Vr~~~ 62 (64)
..|++..++|+..+|..+.
T Consensus 76 ~e~r~~~~dG~~~w~~~~~ 94 (121)
T 3f1p_B 76 VMFRFRSKNQEWLWMRTSS 94 (121)
T ss_dssp EEEEEECTTSCEEEEEEEE
T ss_pred EEEEEEecCCCEEEEEEEE
Confidence 3688999999999888764
No 36
>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A*
Probab=34.31 E-value=32 Score=22.41 Aligned_cols=29 Identities=10% Similarity=0.327 Sum_probs=21.8
Q ss_pred CcCCCccccceeeEEEcCCCCeEEEEEEE
Q psy12898 34 GFRHMHGYGSHTFKLVNKDNEPVYCKFHF 62 (64)
Q Consensus 34 s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~ 62 (64)
+-.+...|++.+|+|++.+....|+.=++
T Consensus 219 ~~~~~~rF~~~~F~F~~~~~~~vylhC~v 247 (297)
T 3nk4_A 219 PREDVLRFRIDVFRFAGDNRNLIYITCHL 247 (297)
T ss_dssp SSTTEEEEEEECCEETTCSSCEEEEEEEE
T ss_pred CCCceEEEEEEeEeccCCCCCeEEEEEEE
Confidence 33466789999999999877778775443
No 37
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=33.60 E-value=44 Score=19.90 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=16.8
Q ss_pred ceeeEEEcCCCCeEEEEEE
Q psy12898 43 SHTFKLVNKDNEPVYCKFH 61 (64)
Q Consensus 43 vhtfk~vn~~G~~~~Vr~~ 61 (64)
|+++-+.|.+|+....||.
T Consensus 2 I~~i~Il~~~Gk~~lsk~y 20 (158)
T 1w63_Q 2 MRFMLLFSRQGKLRLQKWY 20 (158)
T ss_dssp EEEEEEECSSSCEEEEEES
T ss_pred eEEEEEECCCCCEEEEEeC
Confidence 6788899999999999983
No 38
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=30.40 E-value=58 Score=16.44 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=14.8
Q ss_pred eeEEEcCCCCeEEEEEEE
Q psy12898 45 TFKLVNKDNEPVYCKFHF 62 (64)
Q Consensus 45 tfk~vn~~G~~~~Vr~~~ 62 (64)
.|++..++|+..+|....
T Consensus 73 e~r~~~~dG~~~w~~~~~ 90 (117)
T 3f1p_A 73 QYRMLAKHGGYVWLETQG 90 (117)
T ss_dssp CEEEECTTSSEEEEEEEE
T ss_pred EEEEEecCCCEEEEEEee
Confidence 688999999988887654
No 39
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=27.77 E-value=65 Score=16.21 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=14.0
Q ss_pred eeEEEcCCCCeEEEEEEE
Q psy12898 45 TFKLVNKDNEPVYCKFHF 62 (64)
Q Consensus 45 tfk~vn~~G~~~~Vr~~~ 62 (64)
.++++.++|+..+|....
T Consensus 78 e~r~~~~dG~~~~~~~~~ 95 (121)
T 2kdk_A 78 SYKFRAKDGSFVTLKSQW 95 (121)
T ss_dssp EEEEECSSSCEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEEE
Confidence 577889999988886654
No 40
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=26.87 E-value=85 Score=17.24 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=11.2
Q ss_pred eeEEEcCCCCeEEE
Q psy12898 45 TFKLVNKDNEPVYC 58 (64)
Q Consensus 45 tfk~vn~~G~~~~V 58 (64)
+.-+|+++|+....
T Consensus 129 ~~~lid~~G~i~~~ 142 (164)
T 2ggt_A 129 IMYLIGPDGEFLDY 142 (164)
T ss_dssp EEEEECTTSCEEEE
T ss_pred eEEEECCCCeEEEE
Confidence 56699999997764
No 41
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=25.54 E-value=89 Score=17.01 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=12.5
Q ss_pred cceeeEEEcCCCCeEEE
Q psy12898 42 GSHTFKLVNKDNEPVYC 58 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~V 58 (64)
++=++-+++++|+..+.
T Consensus 109 ~~P~~~lid~~G~i~~~ 125 (154)
T 3ia1_A 109 GQPWTFVVDREGKVVAL 125 (154)
T ss_dssp SSCEEEEECTTSEEEEE
T ss_pred cccEEEEECCCCCEEEE
Confidence 33477899999987653
No 42
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=25.38 E-value=50 Score=22.81 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=13.7
Q ss_pred ceeeEEEcCCCCeEEE
Q psy12898 43 SHTFKLVNKDNEPVYC 58 (64)
Q Consensus 43 vhtfk~vn~~G~~~~V 58 (64)
.++|-+++.||+++|+
T Consensus 69 ~fsFVLTd~dG~r~yg 84 (391)
T 3tw8_A 69 HFTFVLTDIESKQRFG 84 (391)
T ss_dssp EEEEEEECTTSCEEEE
T ss_pred eEEEEEecCCCCEEEE
Confidence 5588999999999886
No 43
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=24.71 E-value=74 Score=18.59 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=16.0
Q ss_pred cceeeEEEcCCCCeEEEE
Q psy12898 42 GSHTFKLVNKDNEPVYCK 59 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~Vr 59 (64)
|++.+.+||++|+.-|.|
T Consensus 5 ~i~~~~Ii~~~~~ply~~ 22 (142)
T 2j3w_A 5 GSFYFVIVGHHDNPVFEM 22 (142)
T ss_dssp CCEEEEEECTTSCEEEEE
T ss_pred eEEEEEEEeCCCCEEEEE
Confidence 478999999999998876
No 44
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=24.69 E-value=86 Score=17.50 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=15.4
Q ss_pred eeEEEcCCCCeEEEEEEEe
Q psy12898 45 TFKLVNKDNEPVYCKFHFR 63 (64)
Q Consensus 45 tfk~vn~~G~~~~Vr~~~~ 63 (64)
++|++|+.++.+-+++.+.
T Consensus 36 tlki~Nkt~~~~~~~l~v~ 54 (118)
T 2r39_A 36 TLKVINKTQQVQEYNLDVK 54 (118)
T ss_dssp EEEEEECSSSCEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEe
Confidence 6789999999888777653
No 45
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=24.38 E-value=1.1 Score=29.09 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=28.1
Q ss_pred chhHHHHHhcCchHHHHHHHHHhCCCCCCCcCCCccccceeeEEEcCCCCeEE
Q psy12898 5 WDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVY 57 (64)
Q Consensus 5 ~~~~~df~~~~Pes~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~vn~~G~~~~ 57 (64)
++.+.+++..-|.+.|++.-+ ..++|| |--|| +|++.|+.+|
T Consensus 88 r~~fqk~w~~lP~SqHqL~Sl-DahpIp---------Gq~T~-lI~asGkVrF 129 (201)
T 1q42_A 88 KLQFQKKWLQTPLSSHQLTSY-DGHLIP---------GTGTF-VVHFSAKVRF 129 (201)
T ss_dssp HHHHHHHHHTSCCEEEEEEEE-EEEEET---------TTTEE-EEEEEEEEEE
T ss_pred HHHHHHHHHhCCCcceeeeee-ecceeC---------CCcEE-EEEEeEEEEE
Confidence 456778888888888887765 346777 33355 6777776554
No 46
>2kzk_A Uncharacterized protein YOL083W; selective autophagy, ATG34, alpha-mannosidase, ATG19, protei transport; NMR {Saccharomyces cerevisiae}
Probab=23.60 E-value=57 Score=18.76 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=14.2
Q ss_pred cceeeEEEcCCCCeEEE
Q psy12898 42 GSHTFKLVNKDNEPVYC 58 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~V 58 (64)
+.-|-+.+|.+|+..+|
T Consensus 76 s~~T~~i~NQ~GE~I~~ 92 (107)
T 2kzk_A 76 SNYTMKVVNQDGETILV 92 (107)
T ss_dssp TTCCCEEECTTSCEEEE
T ss_pred cCCeEEEEecCCcEEEE
Confidence 45688999999999876
No 47
>3rtl_A Iron-regulated surface determinant protein B; heme protein, NEAT domain, heme uptake, heme binding, cell W metal transport; HET: HEM; 1.45A {Staphylococcus aureus subsp} PDB: 3rur_A*
Probab=22.98 E-value=64 Score=19.03 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=23.9
Q ss_pred CCcCCCccccceeeEEEcCCCCeEEEEEEEe
Q psy12898 33 DGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 63 (64)
Q Consensus 33 ~s~~~~~~~gvhtfk~vn~~G~~~~Vr~~~~ 63 (64)
..--.|++|-.|-.+++-++|+ .+|.+.++
T Consensus 20 ~e~S~m~~Y~~kPA~v~v~ngk-~~V~mTl~ 49 (121)
T 3rtl_A 20 NNESMMDTFVKHPIKTGMLNGK-KYMVMETT 49 (121)
T ss_dssp SSBCGGGGGBCSCCEEEEETTE-EEEEEEEE
T ss_pred CccchhhhhccCCeEEEEECCE-EEEEEEEe
Confidence 3445789999999999999888 77877664
No 48
>2ipq_X Hypothetical protein STY4665; structural genomics, unknown function, PSI, protein structur initiative; 2.20A {Salmonella typhi} SCOP: a.4.5.74
Probab=22.47 E-value=1.3e+02 Score=17.86 Aligned_cols=55 Identities=15% Similarity=0.066 Sum_probs=35.5
Q ss_pred CCCchhHHHHHhcCchH----------HHHHHHHHhCCCCCCCcCCCccccceeeEE-EcCCCCeEEEE
Q psy12898 2 LQDWDAFWDFISLLPET----------THQVMILFSDRGIPDGFRHMHGYGSHTFKL-VNKDNEPVYCK 59 (64)
Q Consensus 2 l~D~~~~~df~~~~Pes----------~~~~~~~~s~~g~P~s~~~~~~~gvhtfk~-vn~~G~~~~Vr 59 (64)
|.-|.-+.+|++.+|+. ...++.-|...|.-. .-++-.+++++. ...+.+-.+-|
T Consensus 42 LvsP~IF~~Y~~e~~~~~~~~~~~~~~~~~vQk~FEkL~lHr---~~~g~ni~~~~vy~gprk~g~~~~ 107 (135)
T 2ipq_X 42 ISVPGVFFLFLKSHSRSCSSGLKESGRKEQVQAAFEKMRKHR---VSDSRRFWQCCLYEEPGGRGRYKK 107 (135)
T ss_dssp EETTHHHHHHHHHC-----------CHHHHHHHHHHTTCCSC---CBTTBCCEEEEEEEETTTEEEEEE
T ss_pred EEChHHHHHHHHHcCccccccccchhHHHHHHHHHHHhcccc---cCCCccEEEEEEeeCCCcCCCcce
Confidence 34688899999999887 344666677677765 667888889988 55443324433
No 49
>2kzb_A Autophagy-related protein 19; selective autophagy, ATG19, alpha-mannosidase, protein trans; NMR {Saccharomyces cerevisiae}
Probab=22.39 E-value=69 Score=18.74 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=14.9
Q ss_pred cceeeEEEcCCCCeEEEE
Q psy12898 42 GSHTFKLVNKDNEPVYCK 59 (64)
Q Consensus 42 gvhtfk~vn~~G~~~~Vr 59 (64)
+.-|.+.+|.+|+..+|-
T Consensus 82 ~~~t~~i~nq~ge~i~~g 99 (118)
T 2kzb_A 82 AGSTIEIENQYGEVIFLG 99 (118)
T ss_dssp TTCCEEEECTTSSEEEEE
T ss_pred cCCeEEEEecCCcEEEEE
Confidence 456889999999998873
No 50
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=21.73 E-value=84 Score=15.37 Aligned_cols=18 Identities=11% Similarity=0.394 Sum_probs=13.7
Q ss_pred eeEEEcCCCCeEEEEEEE
Q psy12898 45 TFKLVNKDNEPVYCKFHF 62 (64)
Q Consensus 45 tfk~vn~~G~~~~Vr~~~ 62 (64)
-|+++.++|+..++..+.
T Consensus 80 e~r~~~~~g~~~w~~~~~ 97 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHM 97 (118)
T ss_dssp EEEEECTTCCEEEEEEEE
T ss_pred EEEEECCCCCEEEEEEEE
Confidence 578888899888877653
No 51
>2kp6_A Uncharacterized protein; unknown function, structural genomics, PSI-2, protein struct initiative; NMR {Chromobacterium violaceum}
Probab=21.61 E-value=34 Score=19.10 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=10.8
Q ss_pred CchhHHHHHhcCc
Q psy12898 4 DWDAFWDFISLLP 16 (64)
Q Consensus 4 D~~~~~df~~~~P 16 (64)
|++.+.+|+..||
T Consensus 23 ~~~~I~~FI~~H~ 35 (82)
T 2kp6_A 23 EPAAIRAFIDSHP 35 (82)
T ss_dssp CHHHHHHHHHHSC
T ss_pred CHHHHHHHHHhCC
Confidence 6778889998886
No 52
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=21.14 E-value=74 Score=17.77 Aligned_cols=15 Identities=13% Similarity=0.395 Sum_probs=12.4
Q ss_pred eeEEEcCCCCeEEEE
Q psy12898 45 TFKLVNKDNEPVYCK 59 (64)
Q Consensus 45 tfk~vn~~G~~~~Vr 59 (64)
-|.|.|++|+.-||-
T Consensus 18 VY~~~d~~g~vlYVG 32 (99)
T 1yd6_A 18 CYLMKDKHGTVIYVG 32 (99)
T ss_dssp EEEEECSSCCEEEEE
T ss_pred EEEEEcCCCCEEEEe
Confidence 477889999999984
No 53
>2lj9_A CP12 domain-containing protein 2; helix, protein binding, intrinsically disordered protein; NMR {Arabidopsis thaliana}
Probab=20.10 E-value=35 Score=19.68 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.5
Q ss_pred CchhHHHHHhcCchHH
Q psy12898 4 DWDAFWDFISLLPETT 19 (64)
Q Consensus 4 D~~~~~df~~~~Pes~ 19 (64)
|++.+..|...|||+.
T Consensus 77 ~~t~lE~yCdeNPea~ 92 (99)
T 2lj9_A 77 GSDPLEEYCKDNPETN 92 (99)
T ss_dssp -CCHHHHHHHHCTTTT
T ss_pred CCChHHHHHHHCCCch
Confidence 4889999999999974
Done!