RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12898
(64 letters)
>gnl|CDD|163712 cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 3 catalases are the most
abundant subfamily and are found in all three kingdoms
of life; they have a relatively small subunit size of 43
to 75 kDa, and bind a protoheme IX (heme b) group buried
deep inside the structure. Clade 3 catalases also bind
NADPH as a second redox-active cofactor. They form
tetramers, and in eukaryotic cells, catalases are
located in peroxisomes.
Length = 429
Score = 137 bits (347), Expect = 5e-41
Identities = 43/62 (69%), Positives = 49/62 (79%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L+D D FWDF SL PE+ HQV ILFSDRGIPDG+RHM+GYGSHTF LVN E + KFH
Sbjct: 109 LKDPDMFWDFWSLSPESLHQVTILFSDRGIPDGYRHMNGYGSHTFSLVNAKGERFWVKFH 168
Query: 62 FR 63
F+
Sbjct: 169 FK 170
>gnl|CDD|215003 smart01060, Catalase, Catalases are antioxidant enzymes that
catalyse the conversion of hydrogen peroxide to water
and molecular oxygen, serving to protect cells from its
toxic effects. Hydrogen peroxide is produced as a
consequence of oxidative cellular metabolism and can be
converted to the highly reactive hydroxyl radical via
transition metals, this radical being able to damage a
wide variety of molecules within a cell, leading to
oxidative stress and cell death. Catalases act to
neutralise hydrogen peroxide toxicity, and are produced
by all aerobic organisms ranging from bacteria to man.
Most catalases are mono-functional, haem-containing
enzymes, although there are also bifunctional
haem-containing peroxidase/catalases that are closely
related to plant peroxidases, and non-haem,
manganese-containing catalases that are found in
bacteria.
Length = 373
Score = 123 bits (312), Expect = 4e-36
Identities = 39/62 (62%), Positives = 45/62 (72%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L D D FWDF SL PE+ HQV L SDRGIP +RHM+G+G HTFKLVN + E Y KFH
Sbjct: 146 LPDHDMFWDFWSLNPESLHQVTWLMSDRGIPASYRHMNGFGVHTFKLVNAEGERFYVKFH 205
Query: 62 FR 63
F+
Sbjct: 206 FK 207
>gnl|CDD|215783 pfam00199, Catalase, Catalase.
Length = 383
Score = 110 bits (278), Expect = 3e-31
Identities = 38/62 (61%), Positives = 44/62 (70%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L D FWDF++L PE+ HQV LFSDRG P FRHM+GYG HTFK VN D + Y KFH
Sbjct: 149 LPDPTMFWDFLALHPESLHQVTWLFSDRGTPASFRHMNGYGVHTFKFVNADGKRTYVKFH 208
Query: 62 FR 63
F+
Sbjct: 209 FK 210
>gnl|CDD|223824 COG0753, KatE, Catalase [Inorganic ion transport and metabolism].
Length = 496
Score = 108 bits (271), Expect = 9e-30
Identities = 37/62 (59%), Positives = 44/62 (70%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L+D D FWDF SL PE+ HQV L SDRGIP +RHM G+G HTFK VN + V+ KFH
Sbjct: 165 LRDADTFWDFWSLNPESLHQVTWLMSDRGIPASYRHMEGFGVHTFKFVNAKGKRVWVKFH 224
Query: 62 FR 63
F+
Sbjct: 225 FK 226
>gnl|CDD|163705 cd00328, catalase, Catalase heme-binding enzyme. Catalase is a
ubiquitous enzyme found in both prokaryotes and
eukaryotes, which is involved in the protection of cells
from the toxic effects of peroxides. It catalyzes the
conversion of hydrogen peroxide to water and molecular
oxygen. Catalases also utilize hydrogen peroxide to
oxidize various substrates such as alcohol or phenols.
Most catalases exist as tetramers of 65KD subunits
containing a protoheme IX group buried deep inside the
structure. In eukaryotic cells, catalases are located in
peroxisomes.
Length = 433
Score = 100 bits (252), Expect = 2e-27
Identities = 40/62 (64%), Positives = 48/62 (77%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L D D FWDF+SL PE+ HQV LFSDRGIP +RHM+GYGSHTFKLVN + + Y KFH
Sbjct: 109 LPDADRFWDFLSLRPESLHQVSFLFSDRGIPAAYRHMNGYGSHTFKLVNANGKVHYVKFH 168
Query: 62 FR 63
++
Sbjct: 169 WK 170
>gnl|CDD|215328 PLN02609, PLN02609, catalase.
Length = 492
Score = 97.9 bits (244), Expect = 5e-26
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
+Q+ DF+S PE+ H LF DRGIP +RHM G+G HT+KL+NK + Y KFH
Sbjct: 166 IQEPWRILDFLSHHPESLHMFTFLFDDRGIPQDYRHMEGFGVHTYKLINKAGKAHYVKFH 225
Query: 62 FR 63
++
Sbjct: 226 WK 227
>gnl|CDD|163713 cd08157, catalase_fungal, Fungal catalases similar to yeast
catalases A and T. Catalase is a ubiquitous enzyme
found in both prokaryotes and eukaryotes, which is
involved in the protection of cells from the toxic
effects of peroxides. It catalyzes the conversion of
hydrogen peroxide to water and molecular oxygen.
Catalases also utilize hydrogen peroxide to oxidize
various substrates such as alcohol or phenols. This
family of fungal catalases has a relatively small
subunit size, and binds a protoheme IX (heme b) group
buried deep inside the structure. Fungal catalases also
bind NADPH as a second redox-active cofactor. They form
tetramers; in eukaryotic cells, catalases are typically
located in peroxisomes. Saccharomyces cerevisiae
catalase T is found in the cytoplasm, though.
Length = 451
Score = 95.9 bits (239), Expect = 2e-25
Identities = 33/62 (53%), Positives = 42/62 (67%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L+D FWD++S PE+ HQVMILFSDRG P +R M+GY HT+K VN D Y +FH
Sbjct: 125 LKDSTMFWDYLSQNPESIHQVMILFSDRGTPASYRSMNGYSGHTYKWVNPDGSFKYVQFH 184
Query: 62 FR 63
+
Sbjct: 185 LK 186
>gnl|CDD|163710 cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 1 catalases are found in
bacteria, algae, and plants; they have a relatively
small subunit size of 55 to 69 kDa, and bind a protoheme
IX (heme b) group buried deep inside the structure. They
appear to form tetramers. In eukaryotic cells, catalases
are located in peroxisomes.
Length = 469
Score = 87.4 bits (217), Expect = 2e-22
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
+QD + +DF S +PE+TH + L+SD G P +RHM G G HT+K VN + + VY K+H
Sbjct: 151 IQDPNRIFDFFSHVPESTHMLTFLYSDWGTPASYRHMDGSGVHTYKWVNAEGKVVYVKYH 210
Query: 62 FR 63
++
Sbjct: 211 WK 212
>gnl|CDD|236886 PRK11249, katE, hydroperoxidase II; Provisional.
Length = 752
Score = 86.3 bits (214), Expect = 6e-22
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 6 DAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 63
D FWD++SL PET H VM SDRGIP +R M G+G HTF+L+N + + + +FH++
Sbjct: 234 DTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWK 291
>gnl|CDD|163711 cd08155, catalase_clade_2, Clade 2 of the heme-binding enzyme
catalase. Catalase is a ubiquitous enzyme found in both
prokaryotes and eukaryotes, which is involved in the
protection of cells from the toxic effects of peroxides.
It catalyzes the conversion of hydrogen peroxide to
water and molecular oxygen. Catalases also utilize
hydrogen peroxide to oxidize various substrates such as
alcohol or phenols. Clade 2 catalases are mostly found
in bacteria and fungi; they have a large subunit size of
75 to 84 kDa, and bind a heme d group buried deep inside
the structure. They appear to form tetramers. In
eukaryotic cells, catalases are located in peroxisomes.
Length = 443
Score = 84.3 bits (209), Expect = 3e-21
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 6 DAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 63
D FWDF+SL PE+ H VM SDR IP +R M G+G HTF+LVN + + KFH++
Sbjct: 120 DTFWDFVSLQPESAHMVMWAMSDRAIPRSYRMMEGFGVHTFRLVNAQGKSTFVKFHWK 177
>gnl|CDD|163706 cd08150, catalase_like, Catalase-like heme-binding proteins and
protein domains. Catalase is a ubiquitous enzyme found
in both prokaryotes and eukaryotes involved in the
protection of cells from the toxic effects of peroxides.
It catalyses the conversion of hydrogen peroxide to
water and molecular oxygen. Several other related
protein families share the catalase fold and bind to
heme, but do not necessarily have catalase activity.
Length = 283
Score = 59.1 bits (143), Expect = 2e-12
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 6 DAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHF 62
D ++ PE ++ + +PD + + TF +N + +
Sbjct: 108 DFIAWYVEKRPEDLPNLL--GARSQVPDSYAAARYFSQVTFAFINGAGKYRVVRSKD 162
>gnl|CDD|240163 cd05140, Barstar_AU1054-like, Barstar_AU1054-like contains
uncharacterized sequences similar to the
uncharacterized, predicted RNAase inhibitor AU1054
found in Burkholderia cenocepacia. This is a subfamily
of the Barstar family of RNAase inhibitors. Barstar is
an intracellular inhibitor of barnase, an extracellular
ribonuclease of Bacillus amyloliquefaciens. Barstar
binds tightly to the barnase active site and sterically
blocks it thus inhibiting its potentially lethal RNase
activity inside the cell. Barstar also binds and
inhibits a ribonuclease called RNase Sa (produced by
Streptomyces aureofaciens) which belongs to the same
enzyme family as does barnase.
Length = 86
Score = 29.6 bits (67), Expect = 0.031
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 3 QDWDAFWDFISLLPETTHQVMILFSD---RGIPDGFRHM 38
+WDAFWD I+ L + + R +P +
Sbjct: 30 CNWDAFWDAITGLVSMPPVLRFVGWSQFKRRLPRDAELL 68
>gnl|CDD|163709 cd08153, srpA_like, Catalase-like heme-binding proteins similar to
the uncharacterized srpA. Catalase is a ubiquitous
enzyme found in both prokaryotes and eukaryotes involved
in the protection of cells from the toxic effects of
peroxides. It catalyses the conversion of hydrogen
peroxide to water and molecular oxygen. Several other
related protein families share the catalase fold and
bind to heme, but do not necessarily have catalase
activity. This family contains uncharacterized proteins
similar to the Synechococcus elongatus PCC 7942
periplasmic protein srpA, of mostly bacterial origin.
The plasmid-encoded srpA is regulated by sulfate, but
does not seem to function in its uptake or metabolism.
Length = 295
Score = 28.4 bits (64), Expect = 0.18
Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 11 FISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 63
F++ PE + + + P F + YG + F N + + ++ F
Sbjct: 126 FLAAHPEAAAFLAWIKT-APPPASFANTTYYGVNAFYFTNANGKRQPVRWRFV 177
>gnl|CDD|233256 TIGR01063, gyrA, DNA gyrase, A subunit. This model describes the
common type II DNA topoisomerase (DNA gyrase). Two
apparently independently arising families, one in the
Proteobacteria and one in Gram-positive lineages, are
both designated toposisomerase IV [DNA metabolism, DNA
replication, recombination, and repair].
Length = 800
Score = 28.4 bits (64), Expect = 0.19
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 10/37 (27%)
Query: 10 DFIS-LLPETTHQVMILFSDRG---------IPDGFR 36
DFI LL +TH ++ F++RG IP+ R
Sbjct: 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASR 571
>gnl|CDD|215469 PLN02871, PLN02871, UDP-sulfoquinovose:DAG
sulfoquinovosyltransferase.
Length = 465
Score = 28.1 bits (63), Expect = 0.19
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 8 FWDFISLLPETTHQVMILFSDRGIPDGFRHMHGY---GSHTFKL 48
F +FI L E +V+++ +D G+P F HG GS +F
Sbjct: 80 FQNFIRYLREMGDEVLVVTTDEGVPQEF---HGAKVIGSWSFPC 120
>gnl|CDD|177363 PHA02446, PHA02446, hypothetical protein.
Length = 166
Score = 27.4 bits (60), Expect = 0.38
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 9 WDFISLLPETTHQVMILFSDRGIPD 33
WD+++ LPE +++ + GIPD
Sbjct: 126 WDYLTKLPEDQRTQLLMAALAGIPD 150
>gnl|CDD|163707 cd08151, AOS, Allene oxide synthase. Allene oxide synthase
converts a fatty acid hydroperoxide to an allene oxide,
which is an unstable epoxide. In corals, the enzyme is
part of a eiconaosid synthesis pathway that is initiated
by a lipoxygenase, which generates the fatty acid
hydroperoxides in the first step. The structure of
allene oxide synthase closely resembles that of
catalase, but allene oxide synthase does not have
catalase activity.
Length = 328
Score = 27.4 bits (61), Expect = 0.41
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 32 PDGFRHMHGYGSHTFKLVNKDNEPVYCKF 60
PD + +H Y ++ V D + Y +F
Sbjct: 151 PDSYTDLHYYSQICYEFVALDGKSRYARF 179
>gnl|CDD|235502 PRK05560, PRK05560, DNA gyrase subunit A; Validated.
Length = 805
Score = 27.3 bits (62), Expect = 0.43
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Query: 10 DFI-SLLPETTHQVMILFSDRG---------IPDGFR 36
DF+ L +TH ++ F++RG IP+ R
Sbjct: 537 DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR 573
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde dehydrogenase
has been characterized in both prokaryotes and
eukaryotes, functioning as a mammalian tetramer and a
bacterial homodimer. Although similar in monomeric
molecular mass and enzymatic activity, the N-terminal
sequence in P.aeruginosa does not correspond with the
N-terminal sequence predicted for rat liver. Sequence
homology to a variety of prokaryotic and eukaryotic
aldehyde dehydrogenases places MMSDH in the aldehyde
dehydrogenase (NAD+) superfamily (pfam00171), making
MMSDH's CoA requirement unique among known ALDHs.
Methylmalonate semialdehyde dehydrogenase is closely
related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class 1
and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade with
Listeria and Sulfolobus. This Bacillus protein has been
suggested to be located in an iol operon and/or involved
in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present in
Bacillus, Listeria, and Sulfolobus [Energy metabolism,
Amino acids and amines].
Length = 477
Score = 25.6 bits (56), Expect = 1.7
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 16 PETTHQVMILFSDRGIPDG-FRHMHG 40
P ++ LFS+ G PDG +HG
Sbjct: 176 PSAAVKLAELFSEAGAPDGVLNVVHG 201
>gnl|CDD|223038 PHA03302, PHA03302, envelope glycoprotein L; Provisional.
Length = 253
Score = 25.4 bits (56), Expect = 2.0
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 6 DAFWDFISLLPETTHQVMILF----SDRGIPDGFRHMHGYG 42
D F D ++LL Q+ L SD PD + ++GY
Sbjct: 90 DEFLDQLALLHNNPDQLRTLLTLLRSDSA-PDWMKFLNGYS 129
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 25.0 bits (55), Expect = 2.8
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDR-GIP-----DGFRHMHGYGSHTFK 47
L D DA F+ PE I F D G+P DG +G +F
Sbjct: 80 LADQDAVEVFVREAPEE-----IRFLDHWGVPWSRRPDGRISQRPFGGMSFP 126
>gnl|CDD|166019 PLN02378, PLN02378, glutathione S-transferase DHAR1.
Length = 213
Score = 24.7 bits (53), Expect = 3.3
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 12 ISLLPETTHQVMIL--FSDRGIPDGFRHMHGYGSHTFKL 48
+SL P+ H + L F +P+ F H+H Y F L
Sbjct: 152 LSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSL 190
>gnl|CDD|235321 PRK04946, PRK04946, hypothetical protein; Provisional.
Length = 181
Score = 24.1 bits (53), Expect = 5.2
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 38 MHGYGSHTFK 47
MHG+G H K
Sbjct: 130 MHGHGKHILK 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.144 0.500
Gapped
Lambda K H
0.267 0.0853 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,329,684
Number of extensions: 233492
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 25
Length of query: 64
Length of database: 10,937,602
Length adjustment: 35
Effective length of query: 29
Effective length of database: 9,385,212
Effective search space: 272171148
Effective search space used: 272171148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.0 bits)