RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12898
(64 letters)
>2isa_A Catalase; peroxidase, heme, oxidoreductase, iron, hydrogen
peroxide; HET: OMT HEM; 1.97A {Vibrio salmonicida} PDB:
1m85_A* 1mqf_A* 1nm0_A* 2cag_A* 2cah_A* 1e93_A* 1h7k_A*
1h6n_A* 3hb6_A*
Length = 483
Score = 135 bits (343), Expect = 3e-40
Identities = 34/62 (54%), Positives = 42/62 (67%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
++ WDF + LPE HQV I+ SDRGIP +RHMHG+GSHTF +N DNE + KFH
Sbjct: 154 MRSAKNNWDFWTSLPEALHQVTIVMSDRGIPATYRHMHGFGSHTFSFINSDNERYWVKFH 213
Query: 62 FR 63
F
Sbjct: 214 FV 215
>1dgf_A Catalase; heme, NADPH, hydrogen peroxide, oxidoreductase; HET: HEM
NDP; 1.50A {Homo sapiens} SCOP: e.5.1.1 PDB: 1dgg_A*
1f4j_A* 1qqw_A* 1dgh_A* 1dgb_A* 3rgp_A* 3re8_A* 3rgs_A*
3nwl_A* 4blc_A* 1th2_A* 1th3_A* 1th4_A* 1tgu_A* 7cat_A*
8cat_A*
Length = 497
Score = 134 bits (340), Expect = 9e-40
Identities = 44/62 (70%), Positives = 50/62 (80%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L+D D WDF SL PE+ HQV LFSDRGIPDG RHM+GYGSHTFKLVN + E VYCKFH
Sbjct: 172 LKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFH 231
Query: 62 FR 63
++
Sbjct: 232 YK 233
>2xq1_A Peroxisomal catalase; oxidoreductase, hydrogen peroxide
detoxification, PTS1; HET: HEM; 2.90A {Pichia angusta}
Length = 509
Score = 134 bits (340), Expect = 1e-39
Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L+D + FWD+++ E+ HQVM LFS+RG P +R M+GY HT+K N E VY + H
Sbjct: 168 LKDPNMFWDYLTANDESLHQVMYLFSNRGTPASYRTMNGYSGHTYKWYNSKGEWVYVQVH 227
Query: 62 FR 63
F
Sbjct: 228 FI 229
>1si8_A Catalase; N-terminal ARM, anti-parallel beta-barrel, wrapping
region, terminal helical region, tetramer, heme group,
oxidoreducta; HET: HEM; 2.30A {Enterococcus faecalis}
SCOP: e.5.1.1
Length = 484
Score = 134 bits (339), Expect = 1e-39
Identities = 37/62 (59%), Positives = 44/62 (70%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L+ +A WDF S PE+ HQV IL SDRGIP FRHMHG+GSHTFK VN E + K+H
Sbjct: 155 LKSPEAVWDFWSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYH 214
Query: 62 FR 63
F+
Sbjct: 215 FK 216
>1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex,
oxidoreductas; HET: HEM; 1.60A {Helicobacter pylori}
SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A*
Length = 505
Score = 134 bits (339), Expect = 1e-39
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L + D WDF S +PE+ +QV + SDRGIP FRHM G+GSHTF L+N E + KFH
Sbjct: 157 LPNHDMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFH 216
Query: 62 FR 63
F
Sbjct: 217 FH 218
>1gwe_A Catalase; oxidoreductase, hdyrogen-peroxide:hydrogen peroxide
oxidoreductase; HET: HEM; 0.88A {Micrococcus luteus}
SCOP: e.5.1.1 PDB: 1gwh_A* 1hbz_A* 1gwf_A*
Length = 503
Score = 133 bits (338), Expect = 2e-39
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L+D WDF + PE+ HQV L RG+P +R M+GYGSHT+ VN E + K+H
Sbjct: 161 LRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYH 220
Query: 62 FR 63
F
Sbjct: 221 FI 222
>1m7s_A Catalase; beta barrel, alpha helical domain, oxidoreductase; HET:
HEM; 1.80A {Pseudomonas syringae} SCOP: e.5.1.1
Length = 484
Score = 133 bits (337), Expect = 2e-39
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L + +DF S +PE T + +L+S+ G P G+R M G G H +KLVN E Y KFH
Sbjct: 152 LDNDSRRFDFFSHVPEATRTLTLLYSNEGTPAGYRFMDGNGVHAYKLVNAKGEVHYVKFH 211
Query: 62 FR 63
++
Sbjct: 212 WK 213
>2j2m_A Catalase; functional class, oxidoreductase; HET: HEM; 2.4A
{Exiguobacterium oxidotolerans}
Length = 491
Score = 133 bits (336), Expect = 4e-39
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
+QD D +WDF++L PE+T+ +M +F+D GIP +R M G H+FK VN VY K
Sbjct: 157 IQDPDRYWDFMTLRPESTNMLMHIFTDEGIPASYRKMRGSSVHSFKWVNAHGNTVYIKLR 216
Query: 62 FR 63
+
Sbjct: 217 WV 218
>1a4e_A Catalase A; oxidoreductase, peroxidase; HET: HEM; 2.40A
{Saccharomyces cerevisiae} SCOP: e.5.1.1
Length = 488
Score = 128 bits (324), Expect = 1e-37
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 2 LQDWDAFWDFISL--LPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCK 59
L+D D FWDF++ HQVMILFSDRG P +R MHGY HT+K NK+ + Y +
Sbjct: 157 LRDADMFWDFLTTPENQVAIHQVMILFSDRGTPANYRSMHGYSGHTYKWSNKNGDWHYVQ 216
Query: 60 FHFR 63
H +
Sbjct: 217 VHIK 220
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 125 bits (317), Expect = 4e-36
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 6 DAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 63
D FWD++SL PET H VM SDRGIP +R M G+G HTF+L+N + + + +FH++
Sbjct: 237 DTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFHWK 294
>3e4w_A Putative uncharacterized protein; heme enzyme, catalase,
peroxidase, oxidoreductase; HET: HEM; 1.80A
{Mycobacterium avium subsp} PDB: 3e4y_A*
Length = 320
Score = 119 bits (300), Expect = 4e-35
Identities = 9/58 (15%), Positives = 19/58 (32%)
Query: 6 DAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 63
+ P + +L IP + +G H F+ + D + ++H
Sbjct: 135 LRLATHLLTHPRLLGALPLLREANRIPASYATTEYHGLHAFRWIAADGSARFVRYHLV 192
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET:
HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Length = 715
Score = 122 bits (309), Expect = 6e-35
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 6 DAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 63
+ FWDF E TH SDR IP R M G+G +T+ L+N + + KFH+
Sbjct: 180 NNFWDFQFNHTEATHMFTWAMSDRAIPRSLRMMQGFGVNTYTLINAQGKRHFVKFHWT 237
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase,
peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Length = 688
Score = 122 bits (309), Expect = 6e-35
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 6 DAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 63
D+ WDF S P H + S GIP +RHM G+G HTF+LV +D + K+H++
Sbjct: 180 DSAWDFFSSQPSALHTLFWAMSGNGIPRSYRHMDGFGIHTFRLVTEDGKSKLVKWHWK 237
>1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme,
eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura
homomalla} SCOP: e.5.1.2
Length = 374
Score = 107 bits (269), Expect = 3e-30
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 3 QDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHF 62
++ DA +++ P + ++ R PD F H++ Y T KD + YC++
Sbjct: 157 EEGDAAEEYVYKNPYYYYNLVEAL--RRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRA 214
Query: 63 R 63
Sbjct: 215 L 215
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein,
BI-functional enzyme, dioxygenase, fatty ACI
biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura
homomalla}
Length = 1066
Score = 99 bits (248), Expect = 6e-27
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 3 QDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHF 62
++ DA +++ P + ++ + R PD F H++ Y T KD + YC++
Sbjct: 157 EEGDAAEEYVYKNPYYYYNLVE--ALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRA 214
Query: 63 R 63
Sbjct: 215 L 215
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium
janthinellum} PDB: 2xf2_A*
Length = 688
Score = 98.5 bits (245), Expect = 2e-26
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 6 DAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHFR 63
D+ WDF S P H ++ + GIP FRH++G+G HTF+LV D + KFH++
Sbjct: 172 DSAWDFFSQQPSVLHTLLWAXAGHGIPRSFRHVNGFGVHTFRLVTDDGKTKLVKFHWK 229
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded
beta-propeller, six- bladed beta-propeller; 1.79A
{Geobacillus stearothermophilus} SCOP: b.68.10.1
Length = 323
Score = 30.6 bits (70), Expect = 0.018
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 10 DFIS-LLPETTHQVMILFSDRG---------IPDGFR 36
D + +L T V++LF+++G +PD
Sbjct: 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW 75
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase,
isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Length = 327
Score = 29.4 bits (67), Expect = 0.046
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 10 DFIS-LLPETTHQVMILFSDRG---------IPDGFR 36
D ++ +TH +++ F+ +G +P+ R
Sbjct: 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR 78
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling
beta pinwheel, DNA wrapping, isomerase, DNA bindng
protein; HET: DNA; 2.60A {Escherichia coli}
Length = 307
Score = 29.4 bits (67), Expect = 0.048
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 10 DFIS-LLPETTHQVMILFSDRG---------IPDGFR 36
DFI LL TH ++ FS RG +P+ R
Sbjct: 42 DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR 78
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO
gyrase, DNA binding protein, isomerase; HET: DNA GOL;
1.30A {Aquifex aeolicus}
Length = 276
Score = 29.0 bits (66), Expect = 0.059
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 10/37 (27%)
Query: 10 DFIS-LLPETTHQVMILFSDRG---------IPDGFR 36
+ +L + + L S+RG G +
Sbjct: 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK 60
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller,
beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia
burgdorferi} SCOP: b.68.10.1
Length = 312
Score = 29.0 bits (66), Expect = 0.065
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 10/37 (27%)
Query: 10 DFIS-LLPETTHQVMILFSDRG---------IPDGFR 36
D I L TH + + S+ G I D R
Sbjct: 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 28.4 bits (64), Expect = 0.10
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 10/37 (27%)
Query: 10 DFIS-LLPETTHQVMILFSDRG---------IPDGFR 36
DFI L TH ++ F+ G +P+
Sbjct: 46 DFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 27.0 bits (60), Expect = 0.30
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 12 ISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLV 49
+ LP T + R P+ RH+ H KLV
Sbjct: 490 LEPLPVTA------WDVRQAPEALRHLSQ-ARHVGKLV 520
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 2.4
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 6 DAFWDFISLLPETTH---QVM-ILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
F S+ P + H ++ +++ D D ++ H + LV K +
Sbjct: 373 KMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTISIP 429
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 23.8 bits (51), Expect = 2.9
Identities = 5/20 (25%), Positives = 7/20 (35%), Gaps = 1/20 (5%)
Query: 45 TFKLVNKDNEPVYCKFHFRQ 64
++ D YC H Q
Sbjct: 56 GYEQHPGDGHF-YCLQHLPQ 74
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 24.5 bits (54), Expect = 3.2
Identities = 3/22 (13%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 10 DFI-SLLPETTHQVMILFSDRG 30
D + + ++Q ++ G
Sbjct: 503 DSFKAAVKGKSNQPVVFVDSTG 524
>3op0_A Signal transduction protein CBL-C; structural genomics, structural
genomics consortium, SGC, SI transduction protein,
SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Length = 323
Score = 23.2 bits (49), Expect = 7.3
Identities = 10/50 (20%), Positives = 17/50 (34%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNK 51
D +++ L + QV L RG + GS + + K
Sbjct: 67 GGSGDFLLIYLANLEAKSRQVAALLPPRGRRSANDELFRAGSRLRRQLAK 116
>2hv2_A Hypothetical protein; PSI, protein structure initiative, midwest
center for struct genomics, MCSG, structural genomics,
unknown function; HET: EPE PG4; 2.40A {Enterococcus
faecalis} SCOP: d.106.1.4 d.108.1.10
Length = 400
Score = 23.2 bits (49), Expect = 8.7
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 1 MLQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMH 39
+ + D+ + I +S G +G+
Sbjct: 182 GVIRETWWLDYTLNRASKPNNQAIYYSSEGKAEGYVIYR 220
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent
dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2;
1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A*
1gp4_A* 2brt_A*
Length = 356
Score = 23.0 bits (50), Expect = 9.8
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 47 KLVNKDNEPVYCKFHFRQ 64
++V+ ++ + F Q
Sbjct: 319 EMVSVESPAKFPPRTFAQ 336
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.144 0.500
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,069,735
Number of extensions: 46794
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 33
Length of query: 64
Length of database: 6,701,793
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,724,558
Effective search space: 166012182
Effective search space used: 166012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.2 bits)