RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12898
(64 letters)
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 95.8 bits (238), Expect = 7e-26
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
D FWD++SL PET H VM SDRGIP +R M G+G HTF+L+N + + + +FH
Sbjct: 207 QSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRLINAEGKATFVRFH 266
Query: 62 FR 63
++
Sbjct: 267 WK 268
>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
1351]}
Length = 474
Score = 95.3 bits (237), Expect = 8e-26
Identities = 37/62 (59%), Positives = 44/62 (70%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L+ +A WDF S PE+ HQV IL SDRGIP FRHMHG+GSHTFK VN E + K+H
Sbjct: 152 LKSPEAVWDFWSHSPESLHQVTILMSDRGIPLSFRHMHGFGSHTFKWVNAAGEVFFVKYH 211
Query: 62 FR 63
F+
Sbjct: 212 FK 213
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 94.6 bits (235), Expect = 1e-25
Identities = 44/62 (70%), Positives = 50/62 (80%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L+D D WDF SL PE+ HQV LFSDRGIPDG RHM+GYGSHTFKLVN + E VYCKFH
Sbjct: 172 LKDPDMVWDFWSLRPESLHQVSFLFSDRGIPDGHRHMNGYGSHTFKLVNANGEAVYCKFH 231
Query: 62 FR 63
++
Sbjct: 232 YK 233
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId: 210]}
Length = 491
Score = 93.9 bits (233), Expect = 3e-25
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L + D WDF S +PE+ +QV + SDRGIP FRHM G+GSHTF L+N E + KFH
Sbjct: 157 LPNHDMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFH 216
Query: 62 FR 63
F
Sbjct: 217 FH 218
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 93.0 bits (231), Expect = 5e-25
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
+++ WDF S LPE+ HQ+ I SDRG+P +R +HG+GSHT+ +NKDNE + KFH
Sbjct: 152 MRNMAYKWDFFSHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFH 211
Query: 62 FR 63
FR
Sbjct: 212 FR 213
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
1270]}
Length = 498
Score = 93.1 bits (231), Expect = 5e-25
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L+D WDF + PE+ HQV L RG+P +R M+GYGSHT+ VN E + K+H
Sbjct: 156 LRDATMQWDFWTNNPESAHQVTYLMGPRGLPRTWREMNGYGSHTYLWVNAQGEKHWVKYH 215
Query: 62 FR 63
F
Sbjct: 216 FI 217
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 91.5 bits (227), Expect = 2e-24
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 2 LQDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFH 61
L + +DF S +PE T + +L+S+ G P G+R M G G H +KLVN E Y KFH
Sbjct: 152 LDNDSRRFDFFSHVPEATRTLTLLYSNEGTPAGYRFMDGNGVHAYKLVNAKGEVHYVKFH 211
Query: 62 FR 63
++
Sbjct: 212 WK 213
>d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein,
N-terminal domain {Black sea rod (Plexaura homomalla)
[TaxId: 47982]}
Length = 366
Score = 89.3 bits (221), Expect = 5e-24
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 3 QDWDAFWDFISLLPETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCKFHF 62
++ DA +++ P + ++ + R PD F H++ Y T KD + YC++
Sbjct: 155 EEGDAAEEYVYKNPYYYYNLV--EALRRAPDTFAHLYYYSQVTMPFKAKDGKVRYCRYRA 212
Query: 63 R 63
Sbjct: 213 L 213
>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 488
Score = 89.2 bits (221), Expect = 1e-23
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 2 LQDWDAFWDFISLL--PETTHQVMILFSDRGIPDGFRHMHGYGSHTFKLVNKDNEPVYCK 59
L+D D FWDF++ HQVMILFSDRG P +R MHGY HT+K NK+ + Y +
Sbjct: 157 LRDADMFWDFLTTPENQVAIHQVMILFSDRGTPANYRSMHGYSGHTYKWSNKNGDWHYVQ 216
Query: 60 FHFR 63
H +
Sbjct: 217 VHIK 220
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 220
Score = 23.4 bits (49), Expect = 2.6
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 5 WDAFWDFISLLPETTHQVMILFSDRGIPDG 34
W F + + +H+ ++LF++ P G
Sbjct: 115 WVCANLFSDVQFKMSHKRIMLFTNEDNPHG 144
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 23.0 bits (48), Expect = 4.0
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 10 DFI-SLLPETTHQVMILFSDRG---------IPDGFRHMHGYGSHTFKLVNKDNEPVYCK 59
D + ++L T V++LF+++G +PD G +++D E +
Sbjct: 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAI 98
Query: 60 FH 61
Sbjct: 99 PI 100
>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase
(6PGD) {Trypanosoma brucei [TaxId: 5691]}
Length = 300
Score = 22.7 bits (48), Expect = 4.9
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 41 YGSHTFKLVNKDNEPVYCKFHF 62
+G H ++ V+KD + F
Sbjct: 278 FGRHGYERVDKDG-----RESF 294
>d1v7za_ c.125.1.1 (A:) Creatininase {Pseudomonas putida [TaxId:
303]}
Length = 257
Score = 22.4 bits (47), Expect = 5.3
Identities = 6/33 (18%), Positives = 8/33 (24%)
Query: 12 ISLLPETTHQVMILFSDRGIPDGFRHMHGYGSH 44
SL T + G R + H
Sbjct: 86 TSLDGATLTGTVQDIIRELARHGARRLVLMNGH 118
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 21.2 bits (45), Expect = 6.9
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 56 VYCKFHFRQ 64
+YCK HF Q
Sbjct: 21 IYCKPHFNQ 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.144 0.500
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 278,091
Number of extensions: 9973
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 21
Length of query: 64
Length of database: 2,407,596
Length adjustment: 33
Effective length of query: 31
Effective length of database: 1,954,506
Effective search space: 60589686
Effective search space used: 60589686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)