BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12900
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
Length = 963
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 129/303 (42%), Gaps = 38/303 (12%)
Query: 46 IFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLG 105
I K + DA+V+E +++ + DFA ++ L + + +YS P +S L L
Sbjct: 688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLT 747
Query: 106 SILVDEYATSHC----VSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQ 161
LV +A + L +V + T + Q+ G ++HPD VD +L + L+
Sbjct: 748 RQLVHIFAHEPAHFPPIEALFLLVTSV---TLTLFQQ--GPRDHPDIVDSFMQLLAQALK 802
Query: 162 RAPIAFLTSSF-ISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVS 220
R P FL + +V QC +LA FF +L+ + G+ ++V
Sbjct: 803 RKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELL-------PRCGEVESVG 855
Query: 221 EEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQW 280
+ +V + G+ L+ +L+A +M AD+L+ L + + W
Sbjct: 856 K------------VVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMW 903
Query: 281 LQDTISQLPKNTPAGMNAA--TPEQLIEFHSQVTRSE-SAYDVGQALKELSRLYRKHMKY 337
+++ + P G +A +PEQ F Q+ R + V + +KE + L R
Sbjct: 904 IKEALQ------PPGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLHGT 957
Query: 338 NYS 340
+Y+
Sbjct: 958 DYT 960
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex
Length = 963
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 124/303 (40%), Gaps = 38/303 (12%)
Query: 46 IFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLG 105
I K + DA+V+E +++ + DFA + L + + YS P +S L L
Sbjct: 688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPXVPQLCEXLGRXYSTIPQASALDLT 747
Query: 106 SILVDEYATSHC----VSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQ 161
LV +A + L +V + T + Q+ G ++HPD VD +L + L+
Sbjct: 748 RQLVHIFAHEPAHFPPIEALFLLVTSV---TLTLFQQ--GPRDHPDIVDSFXQLLAQALK 802
Query: 162 RAPIAFLTSSF-ISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVS 220
R P FL + +V QC +LA FF +L+ + + K V
Sbjct: 803 RKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR---CGEVESVGKVVQ 859
Query: 221 EEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQW 280
E D R L+ + + GQA S L C AD+L+ L + + W
Sbjct: 860 E---DGRXLLIAVLEAIGGQA--SRSLXDC-----------FADILFALNKHCFSLLSXW 903
Query: 281 LQDTISQLPKNTPAGMNAA--TPEQLIEFHSQVTRSE-SAYDVGQALKELSRLYRKHMKY 337
+++ + P G +A +PEQ F Q+ R + V + +KE + L R
Sbjct: 904 IKEALQ------PPGFPSARLSPEQKDTFSQQILRERVNKRRVKEXVKEFTLLCRGLHGT 957
Query: 338 NYS 340
+Y+
Sbjct: 958 DYT 960
>pdb|3LW5|A Chain A, Improved Model Of Plant Photosystem I
Length = 738
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 219 VSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF----SLHTYMMADVADVL------YE 268
V + D R+ + D V +H A++S+L C+F S Y+ D L +
Sbjct: 399 VRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFS 458
Query: 269 LISVDRQ-VSNQWLQDTISQLPKNTPAGMNAAT 300
++ Q V QW+Q+T + P T G A+T
Sbjct: 459 DTAIQLQPVFAQWIQNTHALAPGTTAPGATAST 491
>pdb|2WSC|A Chain A, Improved Model Of Plant Photosystem I
pdb|2WSE|A Chain A, Improved Model Of Plant Photosystem I
pdb|2WSF|A Chain A, Improved Model Of Plant Photosystem I
Length = 758
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 219 VSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF----SLHTYMMADVADVL------YE 268
V + D R+ + D V +H A++S+L C+F S Y+ D L +
Sbjct: 419 VRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFS 478
Query: 269 LISVDRQ-VSNQWLQDTISQLPKNTPAGMNAAT 300
++ Q V QW+Q+T + P T G A+T
Sbjct: 479 DTAIQLQPVFAQWIQNTHALAPGTTAPGATAST 511
>pdb|2O01|A Chain A, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 754
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 219 VSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF----SLHTYMMADVADVL------YE 268
V + D R+ + D V +H A++S+L C+F S Y+ D L +
Sbjct: 415 VRDYDPTTRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFS 474
Query: 269 LISVDRQ-VSNQWLQDTISQLPKNTPAGMNAAT 300
++ Q V QW+Q+T + P T G A+T
Sbjct: 475 DTAIQLQPVFAQWIQNTHALAPGTTAPGATAST 507
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
Length = 221
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 19/134 (14%)
Query: 91 VLYSKHPHSSFL-YLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTV 149
V YSK H L +LG LV+ + V + + FL P A L
Sbjct: 28 VSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYL-----------IS 76
Query: 150 DDLFRLCTRFLQ-----RAPIAFLTSSFISSVMQCGILATHLDH-REANSTVMKFFYDLI 203
++ F L + L+ R + + I V Q A ++D R+AN T + FY L
Sbjct: 77 EEFFNLLAQKLELHKFIRIKRGKINETIIGDVFQALWAAVYIDSGRDANFT-RELFYKLF 135
Query: 204 HNNRVLSDKDGKKK 217
+ + + K+G+ K
Sbjct: 136 KEDILSAIKEGRVK 149
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 165 IAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGK 215
+ F + + +V+ GIL H HR+ N+ V+ YD I N+++ D DG+
Sbjct: 27 MGFTGQNVVVAVVDTGIL--H--HRDLNANVLPG-YDFISNSQISLDGDGR 72
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 165 IAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGK 215
+ F + + +V+ GIL H HR+ N+ V+ YD I N+++ D DG+
Sbjct: 27 MGFTGQNVVVAVVDTGIL--H--HRDLNANVLPG-YDFISNSQISLDGDGR 72
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 165 IAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGK 215
+ F + + +V+ GIL H HR+ N+ V+ YD I N+++ D DG+
Sbjct: 27 MGFTGQNVVVAVVDTGIL--H--HRDLNANVLPG-YDFISNSQISLDGDGR 72
>pdb|3SPE|A Chain A, Crystal Structure Of The Tail Sheath Protein Protease
Resistant Fragment From Bacteriophage Phikz
pdb|3SPE|B Chain B, Crystal Structure Of The Tail Sheath Protein Protease
Resistant Fragment From Bacteriophage Phikz
Length = 295
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 98 HSSFLYLGSILVDEYATSHCVSGLLDMVQAF 128
+++ LY+G +LVD Y+ VSGL + F
Sbjct: 176 YNADLYVGDVLVDSYSDDGVVSGLSPLYSPF 206
>pdb|3J0H|A Chain A, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|B Chain B, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|C Chain C, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|D Chain D, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|E Chain E, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0H|F Chain F, Fitting Of The Bacteriophage Phikz Gp29pr Structure Into
The Cryo-Em Density Map Of The Phikz Extended Tail
Sheath
pdb|3J0I|A Chain A, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|B Chain B, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|C Chain C, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|D Chain D, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|E Chain E, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
pdb|3J0I|F Chain F, Fitting Of The Phikz Gp29pr Structure Into The Cryo-Em
Density Map Of The Phikz Polysheath
Length = 295
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 98 HSSFLYLGSILVDEYATSHCVSGLLDMVQAF 128
+++ LY+G +LVD Y+ VSGL + F
Sbjct: 176 YNADLYVGDVLVDSYSDDGVVSGLSPLYSPF 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,638,524
Number of Sequences: 62578
Number of extensions: 362524
Number of successful extensions: 1017
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 14
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)