Query psy12900
Match_columns 344
No_of_seqs 109 out of 346
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:38:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022|consensus 100.0 8.3E-36 1.8E-40 296.4 28.3 282 35-339 695-982 (982)
2 PF08767 CRM1_C: CRM1 C termin 99.4 1.9E-10 4.1E-15 108.7 24.5 229 78-334 65-317 (319)
3 KOG2021|consensus 97.5 0.0084 1.8E-07 61.2 17.5 264 36-328 689-973 (980)
4 KOG2274|consensus 97.0 0.07 1.5E-06 55.7 18.2 226 33-273 521-759 (1005)
5 KOG2023|consensus 95.9 0.66 1.4E-05 47.4 17.1 71 44-114 476-550 (885)
6 COG5101 CRM1 Importin beta-rel 95.5 2.5 5.5E-05 43.1 19.5 221 80-329 781-1026(1053)
7 KOG1248|consensus 94.9 5.1 0.00011 43.7 20.8 196 44-274 697-901 (1176)
8 PF08767 CRM1_C: CRM1 C termin 94.5 4.5 9.7E-05 38.3 17.8 155 39-205 64-245 (319)
9 KOG2171|consensus 94.4 1.3 2.9E-05 47.7 15.0 148 54-205 129-279 (1075)
10 KOG1991|consensus 94.3 8.3 0.00018 41.3 20.3 155 41-208 543-715 (1010)
11 KOG4541|consensus 94.2 7 0.00015 39.3 23.2 161 144-334 569-744 (748)
12 KOG2081|consensus 93.6 3.7 8E-05 41.2 15.5 244 44-308 115-367 (559)
13 PF03378 CAS_CSE1: CAS/CSE pro 92.8 11 0.00024 37.3 19.6 139 60-206 43-190 (435)
14 KOG2023|consensus 90.6 20 0.00043 37.1 16.8 181 61-276 580-780 (885)
15 KOG1241|consensus 88.5 36 0.00078 35.8 18.1 84 9-97 514-609 (859)
16 PF12348 CLASP_N: CLASP N term 87.7 9.8 0.00021 33.6 11.6 133 57-202 67-204 (228)
17 PF08167 RIX1: rRNA processing 87.4 11 0.00023 32.0 11.0 127 123-279 21-151 (165)
18 KOG1410|consensus 87.3 24 0.00052 36.7 14.7 65 141-205 872-938 (1082)
19 KOG2171|consensus 86.7 54 0.0012 36.0 20.9 237 63-325 662-906 (1075)
20 PF12460 MMS19_C: RNAPII trans 85.9 37 0.0008 33.3 17.0 58 148-206 339-396 (415)
21 KOG1992|consensus 85.4 55 0.0012 34.8 18.6 173 61-250 566-752 (960)
22 PF03378 CAS_CSE1: CAS/CSE pro 85.3 41 0.00089 33.3 17.7 155 36-206 65-231 (435)
23 KOG1824|consensus 84.8 64 0.0014 35.0 16.8 79 14-95 541-622 (1233)
24 PF10441 Urb2: Urb2/Npa2 famil 84.3 30 0.00064 30.8 15.9 139 141-285 47-200 (223)
25 KOG1241|consensus 82.7 69 0.0015 33.8 20.6 154 39-205 316-478 (859)
26 COG5101 CRM1 Importin beta-rel 80.2 79 0.0017 32.9 15.6 162 40-205 190-372 (1053)
27 KOG1991|consensus 79.5 99 0.0021 33.6 19.9 140 100-277 437-579 (1010)
28 COG5656 SXM1 Importin, protein 75.0 1.2E+02 0.0026 32.2 18.0 215 31-267 530-776 (970)
29 KOG1992|consensus 73.9 1.3E+02 0.0029 32.2 21.5 303 3-328 438-788 (960)
30 KOG2020|consensus 70.8 1.8E+02 0.0038 32.3 18.5 153 81-254 762-920 (1041)
31 KOG2081|consensus 69.7 1.3E+02 0.0028 30.6 13.3 94 141-251 256-350 (559)
32 PF08349 DUF1722: Protein of u 68.2 21 0.00045 28.4 6.4 79 246-331 18-102 (117)
33 PF08506 Cse1: Cse1; InterPro 67.4 59 0.0013 31.5 10.5 122 61-189 229-360 (370)
34 PF12348 CLASP_N: CLASP N term 65.0 97 0.0021 27.1 13.5 136 104-278 76-213 (228)
35 KOG2022|consensus 63.5 1.4E+02 0.003 32.2 12.6 135 141-288 473-617 (982)
36 KOG2274|consensus 63.0 2.1E+02 0.0045 31.1 13.7 49 41-89 570-622 (1005)
37 PF08389 Xpo1: Exportin 1-like 61.8 45 0.00098 26.8 7.5 116 59-178 4-133 (148)
38 KOG1824|consensus 60.7 1.7E+02 0.0037 32.0 12.7 41 143-185 268-308 (1233)
39 KOG1059|consensus 57.0 2.7E+02 0.0057 29.6 19.7 67 41-114 177-245 (877)
40 PF01603 B56: Protein phosphat 56.4 2.1E+02 0.0045 28.1 15.6 201 44-280 133-379 (409)
41 PF08064 UME: UME (NUC010) dom 55.9 65 0.0014 25.1 7.1 39 55-93 66-105 (107)
42 PF12783 Sec7_N: Guanine nucle 55.4 1.1E+02 0.0025 25.5 9.1 79 14-94 43-124 (168)
43 cd07920 Pumilio Pumilio-family 53.1 1.9E+02 0.0041 26.8 17.3 16 36-51 37-53 (322)
44 PF14500 MMS19_N: Dos2-interac 50.8 2E+02 0.0043 26.4 18.4 148 102-287 103-254 (262)
45 PF10487 Nup188: Nucleoporin s 50.5 3.8E+02 0.0083 29.5 15.3 136 55-207 579-731 (931)
46 PF08506 Cse1: Cse1; InterPro 49.8 2.5E+02 0.0054 27.2 14.7 79 108-188 119-201 (370)
47 TIGR02242 tail_TIGR02242 phage 49.5 89 0.0019 25.4 7.1 65 264-334 36-102 (130)
48 COG4403 LcnDR2 Lantibiotic mod 47.9 3.9E+02 0.0084 29.1 12.9 80 92-181 692-772 (963)
49 PF14675 FANCI_S1: FANCI solen 46.9 99 0.0021 27.7 7.6 57 148-205 126-182 (223)
50 COG5215 KAP95 Karyopherin (imp 46.0 3.6E+02 0.0079 27.9 24.2 137 120-284 568-724 (858)
51 smart00802 UME Domain in UVSB 45.7 1.3E+02 0.0028 23.6 7.2 40 54-93 65-105 (107)
52 cd07920 Pumilio Pumilio-family 45.7 2.5E+02 0.0054 26.0 16.3 13 301-313 250-262 (322)
53 PF08569 Mo25: Mo25-like; Int 45.0 2.8E+02 0.0062 26.4 14.6 159 37-205 66-239 (335)
54 KOG0168|consensus 43.9 4.6E+02 0.0099 28.5 17.1 63 40-110 209-277 (1051)
55 PF10508 Proteasom_PSMB: Prote 41.9 3.8E+02 0.0083 27.0 18.4 102 55-166 50-153 (503)
56 PF08158 NUC130_3NT: NUC130/3N 40.7 47 0.001 22.5 3.5 44 270-317 6-49 (52)
57 COG5215 KAP95 Karyopherin (imp 40.5 4.4E+02 0.0096 27.4 23.5 102 8-114 512-631 (858)
58 PF10474 DUF2451: Protein of u 39.4 2.5E+02 0.0054 25.3 9.0 110 44-156 57-188 (234)
59 KOG1488|consensus 38.8 1.8E+02 0.0039 29.5 8.6 73 15-90 285-365 (503)
60 PF10508 Proteasom_PSMB: Prote 37.7 4.4E+02 0.0096 26.6 20.8 150 120-291 283-434 (503)
61 KOG2611|consensus 36.3 4.7E+02 0.01 26.5 12.2 90 39-129 102-202 (698)
62 cd04380 RhoGAP_OCRL1 RhoGAP_OC 36.2 1.6E+02 0.0035 26.1 7.3 61 145-205 100-171 (220)
63 PF14361 RsbRD_N: RsbT co-anta 35.4 2E+02 0.0044 22.0 7.5 55 271-329 8-75 (105)
64 PF11864 DUF3384: Domain of un 35.4 4.6E+02 0.01 26.1 17.1 61 145-206 147-208 (464)
65 KOG3821|consensus 35.0 4.6E+02 0.01 26.8 10.7 99 57-161 86-197 (563)
66 KOG2122|consensus 34.7 8.1E+02 0.018 28.7 14.4 64 9-72 251-328 (2195)
67 KOG1061|consensus 33.8 88 0.0019 32.9 5.7 111 44-166 408-532 (734)
68 cd07356 HN_L-whirlin_R1_like F 33.3 89 0.0019 22.9 4.1 29 299-327 16-44 (78)
69 KOG2200|consensus 32.5 1.1E+02 0.0024 31.4 6.0 57 150-206 371-442 (674)
70 PF13001 Ecm29: Proteasome sta 31.5 4.3E+02 0.0093 26.7 10.3 15 143-157 268-282 (501)
71 PF12755 Vac14_Fab1_bd: Vacuol 31.5 2.4E+02 0.0051 21.6 7.2 51 44-94 27-78 (97)
72 KOG4199|consensus 28.9 3.7E+02 0.008 26.0 8.4 94 39-132 324-424 (461)
73 PF10165 Ric8: Guanine nucleot 28.5 5.9E+02 0.013 25.2 21.3 78 259-342 267-352 (446)
74 PF04747 DUF612: Protein of un 28.2 77 0.0017 30.6 3.9 36 269-313 26-61 (510)
75 KOG2956|consensus 27.8 1.6E+02 0.0036 29.4 6.2 68 55-122 418-489 (516)
76 COG5099 RNA-binding protein of 27.4 8.1E+02 0.018 26.4 15.3 33 301-333 730-766 (777)
77 PF07217 Het-C: Heterokaryon i 26.4 2.4E+02 0.0052 29.0 7.2 53 38-93 373-436 (606)
78 KOG3723|consensus 26.4 7.4E+02 0.016 25.7 16.1 211 54-288 52-300 (851)
79 KOG0310|consensus 26.1 3.4E+02 0.0073 27.1 7.9 53 81-133 407-461 (487)
80 PF04499 SAPS: SIT4 phosphatas 25.9 5.1E+02 0.011 26.0 9.6 124 192-340 32-155 (475)
81 PF10440 WIYLD: Ubiquitin-bind 25.4 1E+02 0.0022 21.9 3.2 27 41-67 26-54 (65)
82 cd00159 RhoGAP RhoGAP: GTPase- 24.8 2.3E+02 0.0049 23.2 6.0 59 148-206 51-124 (169)
83 PF06840 DUF1241: Protein of u 24.4 2E+02 0.0044 24.2 5.4 82 237-332 62-144 (154)
84 PF10274 ParcG: Parkin co-regu 24.2 3.8E+02 0.0082 23.3 7.2 38 53-90 90-130 (183)
85 PF08389 Xpo1: Exportin 1-like 23.1 3.8E+02 0.0082 21.1 8.5 46 226-271 67-115 (148)
86 PF11707 Npa1: Ribosome 60S bi 22.8 6.5E+02 0.014 23.7 14.4 100 146-268 70-184 (330)
87 PF12717 Cnd1: non-SMC mitotic 22.7 4.7E+02 0.01 22.0 14.4 55 146-206 2-56 (178)
88 cd04375 RhoGAP_DLC1 RhoGAP_DLC 22.4 4.3E+02 0.0092 23.4 7.5 59 149-207 72-145 (220)
89 PF08539 HbrB: HbrB-like; Int 22.3 4.8E+02 0.01 22.0 8.0 56 126-185 10-68 (158)
90 KOG1060|consensus 22.3 1E+03 0.022 25.8 20.8 32 36-73 285-317 (968)
91 PF05233 PHB_acc: PHB accumula 22.3 1.9E+02 0.0041 18.4 3.8 30 65-94 4-33 (41)
92 PF04388 Hamartin: Hamartin pr 22.2 9.4E+02 0.02 25.4 16.4 236 46-335 6-262 (668)
93 PRK10167 hypothetical protein; 21.8 3.4E+02 0.0074 23.2 6.4 72 258-336 71-144 (169)
94 cd04386 RhoGAP_nadrin RhoGAP_n 21.3 1.9E+02 0.0041 25.2 5.0 58 150-207 75-147 (203)
95 PF12030 DUF3517: Domain of un 21.0 7.4E+02 0.016 23.7 13.6 209 45-277 117-328 (337)
96 cd04379 RhoGAP_SYD1 RhoGAP_SYD 20.9 3E+02 0.0065 24.2 6.2 59 150-208 74-150 (207)
97 PF11254 DUF3053: Protein of u 20.9 1.4E+02 0.0031 26.8 4.0 31 277-310 30-60 (229)
98 PF02671 PAH: Paired amphipath 20.1 43 0.00093 21.7 0.5 14 142-155 32-45 (47)
99 KOG1240|consensus 20.1 1.3E+03 0.029 26.3 13.8 190 9-209 439-690 (1431)
No 1
>KOG2022|consensus
Probab=100.00 E-value=8.3e-36 Score=296.39 Aligned_cols=282 Identities=15% Similarity=0.154 Sum_probs=262.1
Q ss_pred chHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhh-HHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Q psy12900 35 LCPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDF-AHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEY 112 (344)
Q Consensus 35 p~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~-~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~f 112 (344)
|.+.+++++ |+++++++.|.++.+++|+.|...++++++++..| .|++|.+..+++. |...+...-+.+...++..+
T Consensus 695 ~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~~~a~tl~l~~~~l~~~ 773 (982)
T KOG2022|consen 695 PILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTSCLAVTLSLIAACLLAK 773 (982)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccchHHHHHHHHHHHHHhh
Confidence 788999999 99999999999999999999999999999999988 9999999999998 99999999999999999988
Q ss_pred cC-CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCc-hhhHHHHH-HHHHhcccCcc
Q psy12900 113 AT-SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS-SFISSVMQ-CGILATHLDHR 189 (344)
Q Consensus 113 g~-~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s-~~l~~l~~-~al~~L~~~e~ 189 (344)
.. +.+.+.+.+.+-...+..+.++++. .+.++||+++.+|++++..+++.|..+.++ +.+..++. ||..+|..+|+
T Consensus 774 ~~~~~~~~lv~~~~~~~~q~sl~lf~~~-~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~ 852 (982)
T KOG2022|consen 774 STVEQCKPLVGQDMANAFQQSLLLFEQH-PFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEP 852 (982)
T ss_pred hccccccccHHHHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCcc
Confidence 77 8888888888888888889899886 589999999999999999999999999885 66777776 99999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHH
Q psy12900 190 EANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYEL 269 (344)
Q Consensus 190 ~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L 269 (344)
.++|++++||+.++..+++.+ ...+.+++.+.|+.|+.+++.|++|..||+.++.+||+|++|
T Consensus 853 ~~i~aa~qF~t~~~~~~~s~~-----------------~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~ld~~aDIL~al 915 (982)
T KOG2022|consen 853 TTIRAASQFLTALATYATSHD-----------------LVTVTSVVAEIGPILIYAIMRGVGGEASRSTLDALADILLAL 915 (982)
T ss_pred HHHHHHHHHHHHHHhhcccch-----------------hHHHHHHHHhcchHHHHHHHHHhcCcCccchhHHHHHHHHHH
Confidence 999999999999998876543 468899999999999999999999999999999999999999
Q ss_pred HHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhh-cHHHHHHHHHHHHHHhccCccc
Q psy12900 270 ISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESA-YDVGQALKELSRLYRKHMKYNY 339 (344)
Q Consensus 270 ~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~-r~~~~~v~~F~~~cr~~~~~~y 339 (344)
+++|+.+++.|+.++| +.|++ |+..+|+++|++|+++++++|++ |.+++.+.+||+.|||+.++.|
T Consensus 916 ~~k~~se~r~wl~~~l-q~~gf---Ps~~~s~e~k~rf~t~llrer~n~R~~k~~il~~~L~~~~l~~s~~ 982 (982)
T KOG2022|consen 916 NAKFFSETRTWLKAVL-QIPGF---PSAGVSNEIKSRFVTSLLRERGNKRNFKQQILEFNLACTGLPNSIG 982 (982)
T ss_pred HHhhhHHHHHHHHHHh-cCCCC---CcccCChHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999 67888 78899999999999999999988 7899999999999999999875
No 2
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.39 E-value=1.9e-10 Score=108.66 Aligned_cols=229 Identities=12% Similarity=0.232 Sum_probs=190.5
Q ss_pred hHHhHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHH
Q psy12900 78 FAHLLEPLVKQIVVLYSKH----PHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLF 153 (344)
Q Consensus 78 ~~pll~~i~~~l~~~f~~~----~~~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f 153 (344)
...++|++++.+..-|..+ +-+-.|++.+.++...|. ...+.+..+++.+...|+.++.+ ++.+.||.-..||
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~-~~~~~v~~I~~~vf~~Tl~MI~~--d~~~yPe~r~~ff 141 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGE-LIQPQVPQILEAVFECTLPMINK--DFEEYPEHRVNFF 141 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGG-GCCCCHHHHHHHHHHHHHHHHSS--TSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHh--hhhhChHHHHHHH
Confidence 3457888888888888864 556789999999999997 55567778888888999999987 8899999999999
Q ss_pred HHHHHHHHhCcccccC--chhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHH
Q psy12900 154 RLCTRFLQRAPIAFLT--SSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLM 231 (344)
Q Consensus 154 ~L~~r~l~~~P~~ll~--s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (344)
.|+..+.++||..++. .+.+..++++.+-|++..+++....+++.+.+++....... .+..
T Consensus 142 ~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~-----------------~~~~ 204 (319)
T PF08767_consen 142 KLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTN-----------------PEFA 204 (319)
T ss_dssp HHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-S-----------------HHHH
T ss_pred HHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcC-----------------HHHH
Confidence 9999999999998864 45689999999999999999999999999999998764311 3466
Q ss_pred HHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHHh----------------CHHHHHHHHHHHHhhC-CCCCCC
Q psy12900 232 KDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISV----------------DRQVSNQWLQDTISQL-PKNTPA 294 (344)
Q Consensus 232 ~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~----------------~~~~~~~Wl~~~l~~l-p~~~~~ 294 (344)
++...++...++..++..+......+..+.-+.+|..|... +..-..+|+.+.|.+. |
T Consensus 205 ~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp----- 279 (319)
T PF08767_consen 205 NQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFP----- 279 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-T-----
T ss_pred HHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCC-----
Confidence 78888999999999999999999999999999999999953 1233688888888754 3
Q ss_pred CCCCCCHHHHHHHHHHHHhchhh-cHHHHHHHHHHHHHHhc
Q psy12900 295 GMNAATPEQLIEFHSQVTRSESA-YDVGQALKELSRLYRKH 334 (344)
Q Consensus 295 ~~~~vt~~~k~~F~~~l~~~~~~-r~~~~~v~~F~~~cr~~ 334 (344)
++++++.+.|++.+....+. .+||..+|||-..-|..
T Consensus 280 ---~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~kef 317 (319)
T PF08767_consen 280 ---NLSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQLKEF 317 (319)
T ss_dssp ---TS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHTST
T ss_pred ---CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhc
Confidence 58899999999999988874 79999999998876643
No 3
>KOG2021|consensus
Probab=97.47 E-value=0.0084 Score=61.23 Aligned_cols=264 Identities=12% Similarity=0.151 Sum_probs=164.1
Q ss_pred hHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Q psy12900 36 CPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT 114 (344)
Q Consensus 36 ~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~ 114 (344)
+..+..++ .++-.++..++..+.+=.++--.+.+++-++|....|++|.+++.+...-...----||...+.++..|..
T Consensus 689 ~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk~ 768 (980)
T KOG2021|consen 689 NMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFKT 768 (980)
T ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 66777888 88888888888888888888888999999999999999999999987765555555688899999999996
Q ss_pred CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCch------HHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhc---c
Q psy12900 115 SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDT------VDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILAT---H 185 (344)
Q Consensus 115 ~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDv------ved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L---~ 185 (344)
.+-+.+.+|+--+..+.|..+.....+.+..+. -.+|++|...++-+-=..++.......++.-.+..+ +
T Consensus 769 -~~~~ilnqmlppll~rIfsvi~r~a~p~dt~aa~ek~~lrksy~~fLqtftn~g~~silat~~n~~~~~~iln~l~~~a 847 (980)
T KOG2021|consen 769 -DCYQILNQMLPPLLNRIFSVIERIAKPIDTAAAAEKILLRKSYCTFLQTFTNNGVTSILATDINRAILPVILNDLVTYA 847 (980)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcccCCCCChhHHHHHHHHHHHHHHHHHHHhcCCcceeeeccchhhhhhHHHHHhhhcc
Confidence 777788899988889999998865333333333 346777777776443333332222222222111111 1
Q ss_pred cCcchh--H---HHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhH-----HHHHHHHHHchhccC
Q psy12900 186 LDHREA--N---STVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQ-----ALVSNLLQACVFSLH 255 (344)
Q Consensus 186 ~~e~~~--~---~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~-----~Lv~~ll~~l~g~~p 255 (344)
....++ - ...|+++..+++- .+.+.|.+.+ ++...|. ..++.-+. +..+-.
T Consensus 848 ~~y~dpmmQksln~lcnk~v~lwgg---kdg~~gf~df---------------vlk~~~ln~Cf~~pl~~~Fn-~~Dgnt 908 (980)
T KOG2021|consen 848 PQYIDPMMQKSLNVLCNKIVCLWGG---KDGDNGFKDF---------------VLKIDGLNKCFPIPLEIPFN-IKDGNT 908 (980)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCC---cCCccccccc---------------eeecccccceeeecccCCcc-cccchH
Confidence 222232 2 3334555555432 3322222211 1111111 11111110 111111
Q ss_pred ccchhcHHHHHHHHHHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhhcHHHH-HHHHHH
Q psy12900 256 TYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQ-ALKELS 328 (344)
Q Consensus 256 rs~~~~~a~vL~~L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~r~~~~-~v~~F~ 328 (344)
...+.++|..+..+-.+.++++...|.+.- +|. .+++++-.++|++++..-. .|.|++ -++.|.
T Consensus 909 ~~~lgEla~llK~i~ek~gnecv~yL~q~y--lPs------~q~pqela~qycqaLq~~d-~k~Fk~~f~~~fi 973 (980)
T KOG2021|consen 909 KTMLGELARLLKEIFEKSGNECVKYLTQIY--LPS------IQLPQELAIQYCQALQTMD-QKQFKKWFVDNFI 973 (980)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHh--ccc------ccCCHHHHHHHHHHHhccc-hhHHHHHHHHHHH
Confidence 223456778888888888888888877653 444 4899999999999987544 667776 444443
No 4
>KOG2274|consensus
Probab=96.96 E-value=0.07 Score=55.72 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=122.3
Q ss_pred CcchHHHHHhh-hhHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhhhHHhH-HHHHHHHHHHHhc-CCCccHHHHHHH
Q psy12900 33 SFLCPFVCVNK-GTIFKTCETYQQD--ARVMEHSSRCLRYAIRCVGKDFAHLL-EPLVKQIVVLYSK-HPHSSFLYLGSI 107 (344)
Q Consensus 33 ~~p~~~~~~~i-pil~~il~~~~~d--~~vvE~~c~~lr~~~r~~~~~~~pll-~~i~~~l~~~f~~-~~~~~~L~l~s~ 107 (344)
+|++.+....+ ..+..+..++..+ .-+||++|-+.+. +..+.... ..|+.+....|.+ +.-| ++++.
T Consensus 521 ~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-----dpef~as~~skI~P~~i~lF~k~s~DP---~V~~~ 592 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-----DPEFAASMESKICPLTINLFLKYSEDP---QVASL 592 (1005)
T ss_pred ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-----ChhhhhhhhcchhHHHHHHHHHhcCCc---hHHHH
Confidence 34444444333 3444444444333 4458888887762 22222111 1133333444443 2223 45555
Q ss_pred HHHHhcC-CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCc---hhhHHHHHHHHHh
Q psy12900 108 LVDEYAT-SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS---SFISSVMQCGILA 183 (344)
Q Consensus 108 lv~~fg~-~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s---~~l~~l~~~al~~ 183 (344)
.-+.|-+ -.-.+....|.+++.....+.++.. +-..++....--.++.+.++|+.|.-+-.. -.|+++.+|.
T Consensus 593 ~qd~f~el~q~~~~~g~m~e~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t--- 668 (1005)
T KOG2274|consen 593 AQDLFEELLQIAANYGPMQERLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT--- 668 (1005)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe---
Confidence 4454443 1122234455567777777888774 334446666666777888999999884333 2366666654
Q ss_pred cccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHH----HHhhHHHHHHHHHHchhccCccch
Q psy12900 184 THLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIV----SKHGQALVSNLLQACVFSLHTYMM 259 (344)
Q Consensus 184 L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l----~~~G~~Lv~~ll~~l~g~~prs~~ 259 (344)
+-..+.++...+...|+.+|+.+.+.-.. |.-. +..+.-.....+.+++ ...+...|-.++-.+..++++..=
T Consensus 669 lHsdD~~tlQ~~~EcLra~Is~~~eq~~t-~~~e--~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~ 745 (1005)
T KOG2274|consen 669 LHSDDHETLQNATECLRALISVTLEQLLT-WHDE--PGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELG 745 (1005)
T ss_pred eecCChHHHHhHHHHHHHHHhcCHHHHHh-hccC--CCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhc
Confidence 45677788899999999999885432210 0000 1112222333334443 244555666666666667777777
Q ss_pred hcHHHHHHHHHHhC
Q psy12900 260 ADVADVLYELISVD 273 (344)
Q Consensus 260 ~~~a~vL~~L~~~~ 273 (344)
+.+..+|++.+++-
T Consensus 746 ~n~d~IL~Avisrm 759 (1005)
T KOG2274|consen 746 PNLDQILRAVISRL 759 (1005)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777776654
No 5
>KOG2023|consensus
Probab=95.86 E-value=0.66 Score=47.40 Aligned_cols=71 Identities=15% Similarity=0.195 Sum_probs=56.9
Q ss_pred hhHHHHHHH-hccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHH---HHHHHHHHHhcC
Q psy12900 44 GTIFKTCET-YQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFL---YLGSILVDEYAT 114 (344)
Q Consensus 44 pil~~il~~-~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L---~l~s~lv~~fg~ 114 (344)
|+++.++.+ .-++-.|-|++|..+-..-...+....|++..|+..++-+|++..+--.+ +.++.+.+.-|.
T Consensus 476 pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 476 PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 888888765 45678999999999998888899999999999999999999887665433 445666666555
No 6
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=95.49 E-value=2.5 Score=43.13 Aligned_cols=221 Identities=13% Similarity=0.116 Sum_probs=145.8
Q ss_pred HhHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHhcC--CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHH
Q psy12900 80 HLLEPLVKQIVVLYSKH----PHSSFLYLGSILVDEYAT--SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLF 153 (344)
Q Consensus 80 pll~~i~~~l~~~f~~~----~~~~~L~l~s~lv~~fg~--~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f 153 (344)
.+++.+++.+.--|..+ +-+..|.+.+++|..-++ +.-+..+.. .....++..+.. +++++|+.-.+||
T Consensus 781 ~lv~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~i~~~~~l~l~---svf~ctl~mi~k--df~EypEhr~~f~ 855 (1053)
T COG5101 781 DLVNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQRELFLI---SVFICTLIMIVK--DFDEYPEHRKNFL 855 (1053)
T ss_pred HHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHhhhHHHHHh--hhhhChHHHHHHH
Confidence 46777888888788765 446789999999998876 222222211 222234445555 8899999999999
Q ss_pred HHHHHHHHhCcccccCc--hhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHH
Q psy12900 154 RLCTRFLQRAPIAFLTS--SFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLM 231 (344)
Q Consensus 154 ~L~~r~l~~~P~~ll~s--~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (344)
.|+..+..++=..|+.- |.+..+....+=++....||.-...++.+..++....+.. ...+
T Consensus 856 ~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg-----------------~~~~ 918 (1053)
T COG5101 856 LLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMG-----------------VPFI 918 (1053)
T ss_pred HHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhC-----------------CchH
Confidence 99999988887777644 5566666655556677788988888999999988764332 0134
Q ss_pred HHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHHhC--------------HH--HHHHHHHHHHhhCCCCCCCC
Q psy12900 232 KDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVD--------------RQ--VSNQWLQDTISQLPKNTPAG 295 (344)
Q Consensus 232 ~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~~--------------~~--~~~~Wl~~~l~~lp~~~~~~ 295 (344)
.+...++--..++.++.-+...=..+-.+.=+-+|..|+..- |+ ...+++..-+.. .+
T Consensus 919 n~F~~~yy~s~l~~il~vltDsDhKsgF~~Q~Llla~li~lv~dnkisVPlyd~~~~n~~~lseyi~~l~~~--sf---- 992 (1053)
T COG5101 919 NQFYAQYYMSTLENILGVLTDSDHKSGFDQQCLLLAFLIRLVKDNKISVPLYDGINPNITILSEYIVGLFVK--SF---- 992 (1053)
T ss_pred HHHHHHHHHHHHHHHHeeeeccchhccchHHHHHHHHHHHHHhccccccccccCCCCchhhHHHHHHHHHHh--hc----
Confidence 555555555566666655554444455554444444444321 22 256666655543 22
Q ss_pred CCCCCHHHHHHHHHHHHhchhh-cHHHHHHHHHHH
Q psy12900 296 MNAATPEQLIEFHSQVTRSESA-YDVGQALKELSR 329 (344)
Q Consensus 296 ~~~vt~~~k~~F~~~l~~~~~~-r~~~~~v~~F~~ 329 (344)
+++|.++-..|.-.+...-+- .-|+..++||--
T Consensus 993 -p~it~e~v~~f~~~l~~~~~d~~ifk~~~~df~v 1026 (1053)
T COG5101 993 -PNITQESVKIFSVGLFELCGDDEIFKEHVEDFRV 1026 (1053)
T ss_pred -CcccHHHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence 268999999999999877655 579999999954
No 7
>KOG1248|consensus
Probab=94.90 E-value=5.1 Score=43.66 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=104.9
Q ss_pred hhHHHHHHHhccchHHHH-HHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCC----C--ccHHHHHH--HHHHHhcC
Q psy12900 44 GTIFKTCETYQQDARVME-HSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHP----H--SSFLYLGS--ILVDEYAT 114 (344)
Q Consensus 44 pil~~il~~~~~d~~vvE-~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~----~--~~~L~l~s--~lv~~fg~ 114 (344)
-+...+..-+......+. .-|.|++..++.++.+...+++..+.-++-...... + --+|+.++ .....+|.
T Consensus 697 ~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~ 776 (1176)
T KOG1248|consen 697 DIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGN 776 (1176)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccc
Confidence 444444555555444443 478999999999986666666664433333332211 1 12345555 33445555
Q ss_pred CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHH
Q psy12900 115 SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANST 194 (344)
Q Consensus 115 ~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~a 194 (344)
+.....+...+. ++... -..+.+-++..-+=.+++++...-. ++..+.++.+++.....|+-..++.+++
T Consensus 777 e~~~~~lnefl~--------~Isag-l~gd~~~~~as~Ivai~~il~e~~~-~ld~~~l~~li~~V~~~L~s~sreI~ka 846 (1176)
T KOG1248|consen 777 EPASAILNEFLS--------IISAG-LVGDSTRVVASDIVAITHILQEFKN-ILDDETLEKLISMVCLYLASNSREIAKA 846 (1176)
T ss_pred cchHHHHHHHHH--------HHHhh-hcccHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 111223333332 22221 1112222222213334444444433 4566788999999988999999999999
Q ss_pred HHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHHhCH
Q psy12900 195 VMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDR 274 (344)
Q Consensus 195 a~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~~~ 274 (344)
|..|+..++..- + ...+.+|-+.|+..++. +.-+.-+...-.+--+|-.|+++|+
T Consensus 847 AI~fikvlv~~~---p---------------------e~~l~~~~~~LL~sll~-ls~d~k~~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 847 AIGFIKVLVYKF---P---------------------EECLSPHLEELLPSLLA-LSHDHKIKVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHHHcC---C---------------------HHHHhhhHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 999999988653 1 23344455555555554 2223334444444445555555553
No 8
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.46 E-value=4.5 Score=38.33 Aligned_cols=155 Identities=10% Similarity=0.153 Sum_probs=84.2
Q ss_pred HHHhh--hhHHHHHHHhccc-hHHHH-HHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Q psy12900 39 VCVNK--GTIFKTCETYQQD-ARVME-HSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT 114 (344)
Q Consensus 39 ~~~~i--pil~~il~~~~~d-~~vvE-~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~ 114 (344)
+.+.. |+++.++.-|..+ ++.=| .+-.++..+++.++..+.+.++.+++.+-.. +...+-+.|-+
T Consensus 64 v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~-----------Tl~MI~~d~~~ 132 (319)
T PF08767_consen 64 VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC-----------TLPMINKDFEE 132 (319)
T ss_dssp HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH-----------HHHHHSSTSSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------HHHHHHhhhhh
Confidence 55555 8888899988843 22211 1334666677777777777777776655432 22222233443
Q ss_pred -CcchHHHHHHHHHhHHHHHHhhcCCC-------------CC-CCCCchHHHHHHHHHHHHHhCcc-------cccCchh
Q psy12900 115 -SHCVSGLLDMVQAFLPPTYAILQEED-------------GL-KNHPDTVDDLFRLCTRFLQRAPI-------AFLTSSF 172 (344)
Q Consensus 115 -~~~~~~l~~~~~~l~~~~~~~l~~~~-------------~~-~~~PDvved~f~L~~r~l~~~P~-------~ll~s~~ 172 (344)
|+.+..+-.++..+....+..+-+.+ ++ ..++|+.+.-+..+..++.+... .|.+ ..
T Consensus 133 yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~-~y 211 (319)
T PF08767_consen 133 YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQ-QY 211 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHH-HH
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HH
Confidence 55555555555555555443332210 11 25678888888888888877666 1111 11
Q ss_pred hHHHHHHHHHhcc-cCcchhHHHHHHHHHHHhhc
Q psy12900 173 ISSVMQCGILATH-LDHREANSTVMKFFYDLIHN 205 (344)
Q Consensus 173 l~~l~~~al~~L~-~~e~~~~~aa~~Fl~~li~~ 205 (344)
+-.+++.....++ -.|+...+.-+..|..++..
T Consensus 212 ~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 212 YLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 2233344443443 45666666666666666644
No 9
>KOG2171|consensus
Probab=94.36 E-value=1.3 Score=47.73 Aligned_cols=148 Identities=14% Similarity=0.177 Sum_probs=105.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-CcchHHHHHHHHHhHHHH
Q psy12900 54 QQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT-SHCVSGLLDMVQAFLPPT 132 (344)
Q Consensus 54 ~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~-~~~~~~l~~~~~~l~~~~ 132 (344)
+.|...=|-+-+++......+|....|+++.+...+.+++....++ .--.+-..+..|.. -+........|..+....
T Consensus 129 S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~ 207 (1075)
T KOG2171|consen 129 SPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSL 207 (1075)
T ss_pred CCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHH
Confidence 3567778889999999999999999999999999999998877766 33333233333333 112334555566666666
Q ss_pred HHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcch--hHHHHHHHHHHHhhc
Q psy12900 133 YAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHRE--ANSTVMKFFYDLIHN 205 (344)
Q Consensus 133 ~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~--~~~aa~~Fl~~li~~ 205 (344)
+..++.. .-.++-|..++-|..+..++...|..+ .|.+..++++.+.-....+.+ +=..|+.|++.+...
T Consensus 208 l~vl~~~-i~~~d~~~a~~~l~~l~El~e~~pk~l--~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~ 279 (1075)
T KOG2171|consen 208 LNVLQEV-IQDGDDDAAKSALEALIELLESEPKLL--RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY 279 (1075)
T ss_pred HHHhHhh-hhccchHHHHHHHHHHHHHHhhchHHH--HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence 6666664 345677889999999999999999975 567788888877666554444 345678888888876
No 10
>KOG1991|consensus
Probab=94.29 E-value=8.3 Score=41.35 Aligned_cols=155 Identities=10% Similarity=0.085 Sum_probs=92.0
Q ss_pred Hhh-hhHHHHHHHhccchHH-HHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCC----------------ccHH
Q psy12900 41 VNK-GTIFKTCETYQQDARV-MEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPH----------------SSFL 102 (344)
Q Consensus 41 ~~i-pil~~il~~~~~d~~v-vE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~----------------~~~L 102 (344)
..+ |++++++.. ..++ .|.+..++..++-.++++..|+..++++.|+..|-+.-. ..+|
T Consensus 543 ~hvp~~mq~lL~L---~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL 619 (1010)
T KOG1991|consen 543 AHVPPIMQELLKL---SNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGIL 619 (1010)
T ss_pred hhhhHHHHHHHHH---HHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence 344 565555543 1122 567788888899999999999999999999998876433 2467
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHH
Q psy12900 103 YLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGIL 182 (344)
Q Consensus 103 ~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~ 182 (344)
..+++++.++-+ ....++++-..+...+-.+|++ +.-|..++.|.++..+.=..|.+ +|..=.++.....
T Consensus 620 ~Ti~Til~s~e~--~p~vl~~le~~~l~vi~~iL~~-----~i~dfyeE~~ei~~~~t~~~~~I---sp~mW~ll~li~e 689 (1010)
T KOG1991|consen 620 RTISTILLSLEN--HPEVLKQLEPIVLPVIGFILKN-----DITDFYEELLEIVSSLTFLSKEI---SPIMWGLLELILE 689 (1010)
T ss_pred HHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHhhhhhhhccc---CHHHHHHHHHHHH
Confidence 888888888854 2223444333333333333444 23467777777776665554444 3433344444444
Q ss_pred hcccCcchhHHHHHHHHHHHhhcCCC
Q psy12900 183 ATHLDHREANSTVMKFFYDLIHNNRV 208 (344)
Q Consensus 183 ~L~~~e~~~~~aa~~Fl~~li~~~~~ 208 (344)
++.-.-.+=.-..+-++...+..++.
T Consensus 690 ~~~~~~~dyf~d~~~~l~N~vt~g~~ 715 (1010)
T KOG1991|consen 690 VFQDDGIDYFTDMMPALHNYVTYGTP 715 (1010)
T ss_pred HHhhhhHHHHHHHHHHHhhheeeCch
Confidence 44433344444555666666666654
No 11
>KOG4541|consensus
Probab=94.18 E-value=7 Score=39.35 Aligned_cols=161 Identities=17% Similarity=0.164 Sum_probs=100.8
Q ss_pred CCCchHHHHHHHHHHHHHhCcccccCch--hhHHHHHHHHHhcc-cCcchhHHHHHHHHHHHhhcCCCCCcccCccccCC
Q psy12900 144 NHPDTVDDLFRLCTRFLQRAPIAFLTSS--FISSVMQCGILATH-LDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVS 220 (344)
Q Consensus 144 ~~PDvved~f~L~~r~l~~~P~~ll~s~--~l~~l~~~al~~L~-~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~ 220 (344)
..|.+.-+||+++.-+..+.|..+-+-+ ....+.+|.-.|++ -.+.....+..+-+..+-+.+.+.. -
T Consensus 569 k~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~~LGMTge~~s~~l~~~~e~v~hfgspankgr-----c---- 639 (748)
T KOG4541|consen 569 KYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCSGLGMTGESHSAGLHTDPEGVFHFGSPANKGR-----C---- 639 (748)
T ss_pred hchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhhccCCccccchHhhccChHhhhcccccccccc-----c----
Confidence 5799999999999999999999986554 57788888777766 2222222333333333333332221 0
Q ss_pred cchhHHHHHHHHHHHHHhhHHHHHHHHHHchh-ccCccchhcHHHHHHHHHHhCHHHHHHHHHHHHhhCCCCCCCCCCCC
Q psy12900 221 EEDFDMRHRLMKDIVSKHGQALVSNLLQACVF-SLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAA 299 (344)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g-~~prs~~~~~a~vL~~L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~v 299 (344)
..--.++.. ..+..++.-+.. +...+.+...+|.|+.|+...|+.+.+.+.+-+++- .
T Consensus 640 --------TqnlafL~~---efL~tvf~~ll~~~~~t~l~s~a~~Aly~LI~~e~~~y~elvneL~skq----------~ 698 (748)
T KOG4541|consen 640 --------TQNLAFLSR---EFLRTVFHFLLFEDYSTDLVSTAADALYPLILCEPNLYQELVNELISKQ----------A 698 (748)
T ss_pred --------cccHHHHHH---HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc----------c
Confidence 000011211 345555655553 567778888999999999999988888887777642 3
Q ss_pred CHHHHHHHHHHHHhc----------hhh-cHHHHHHHHHHHHHHhc
Q psy12900 300 TPEQLIEFHSQVTRS----------ESA-YDVGQALKELSRLYRKH 334 (344)
Q Consensus 300 t~~~k~~F~~~l~~~----------~~~-r~~~~~v~~F~~~cr~~ 334 (344)
.|.-|++.-+.+... |.+ -+||.-+.+|-.---|+
T Consensus 699 np~~~qrLa~Af~~Lt~sn~~psldR~~~~~Frk~le~Fl~~V~Gl 744 (748)
T KOG4541|consen 699 NPNFKQRLANAFQVLTTSNQLPSLDRLNYQRFRKNLENFLVEVLGL 744 (748)
T ss_pred ChHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHhhcc
Confidence 466677666555332 122 37888888887655543
No 12
>KOG2081|consensus
Probab=93.55 E-value=3.7 Score=41.24 Aligned_cols=244 Identities=10% Similarity=0.021 Sum_probs=135.0
Q ss_pred hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-Cc---chH
Q psy12900 44 GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT-SH---CVS 119 (344)
Q Consensus 44 pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~-~~---~~~ 119 (344)
|.+..+++..+.+.+-++-.|+.-| ..++.++..+-.+.++..+....+.+...+ =...+.++..||+ .. +..
T Consensus 115 ~~lLeiL~VlPEE~~~~~~~~~a~R--r~e~~~~l~~~~~~~L~~l~~lLe~~~l~~-~~~l~~Vl~~l~SWl~~~~~~~ 191 (559)
T KOG2081|consen 115 PILLEILKVLPEETRDIRLTVGANR--RHEFIDELAAQVSKVLVFLSDLLERSDLKS-SDDLEQVLRCLGSWLRLHVFPP 191 (559)
T ss_pred HHHHHHHHhCcHhhcchhhhhhhhh--HHHHHHHHHHhHHHHHHHHHHHHhhcCCCh-hhHHHHHHHHHhhhhhhccCCH
Confidence 4566777777776666666555555 233334444555556666666777666554 2244666777777 32 222
Q ss_pred HHHHHHHHhHHHHHHhhcCCCCCC---CCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHH
Q psy12900 120 GLLDMVQAFLPPTYAILQEEDGLK---NHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVM 196 (344)
Q Consensus 120 ~l~~~~~~l~~~~~~~l~~~~~~~---~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~ 196 (344)
.......-+.+-.|..++..+... +.++...+-+....+-.+.++..+...+.++..+.++.++-..+++.+....+
T Consensus 192 d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIF 271 (559)
T KOG2081|consen 192 DQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIF 271 (559)
T ss_pred HHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHH
Confidence 222112234445566665332222 23333333333333332356666677788999999998888777777666666
Q ss_pred HHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchh--ccCccchhcHHHHHHHHHHhCH
Q psy12900 197 KFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF--SLHTYMMADVADVLYELISVDR 274 (344)
Q Consensus 197 ~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g--~~prs~~~~~a~vL~~L~~~~~ 274 (344)
.++.+.+....... | +.....++.++...|..-.+.+-..+.+ .+.+...-+..+..+.+.+-|-
T Consensus 272 tel~eaf~~~i~~n-p------------~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~ 338 (559)
T KOG2081|consen 272 TELGEAFVVLISTN-P------------EEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYF 338 (559)
T ss_pred HHHHHHHHHHHhhC-C------------CcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHH
Confidence 65555444432221 0 1233466677766676655555555554 3344444445566666667777
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHH
Q psy12900 275 QVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFH 308 (344)
Q Consensus 275 ~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~ 308 (344)
..+-.|+..-++= |... .-++++..+.|-
T Consensus 339 ~rLvs~l~~h~ql-p~~~----~~l~Ee~~~f~~ 367 (559)
T KOG2081|consen 339 LRLVSLLKRHVQL-PPDQ----FDLPEEESEFFE 367 (559)
T ss_pred HHHHHHHHHHccC-CCcc----ccCccchhHHHH
Confidence 7788888887764 4431 145555555443
No 13
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.78 E-value=11 Score=37.34 Aligned_cols=139 Identities=14% Similarity=0.253 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc---CCC----ccHH-HHHHHHHHHhcCCcchHHHHHHHHHhHHH
Q psy12900 60 MEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSK---HPH----SSFL-YLGSILVDEYATSHCVSGLLDMVQAFLPP 131 (344)
Q Consensus 60 vE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~---~~~----~~~L-~l~s~lv~~fg~~~~~~~l~~~~~~l~~~ 131 (344)
.|-+.+|+-+.+-..++...|+...+++.++..... +|. ..|+ ...+.+|..-.+ ...+.+.+.-+.+...
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~-~~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE-ADPEAVSQFEEALFPP 121 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G-GGHH---HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC-CChhHHHHHHHHHHHH
Confidence 556666666667778888888888888888776653 443 2243 445666664432 2222334434455555
Q ss_pred HHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcc-hhHHHHHHHHHHHhhcC
Q psy12900 132 TYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHR-EANSTVMKFFYDLIHNN 206 (344)
Q Consensus 132 ~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~-~~~~aa~~Fl~~li~~~ 206 (344)
...+|++ |-.|-+.--|.+++.+++.+|.-=++ +....++..-+.- .+.|+ +-+-+..++|..++..+
T Consensus 122 f~~ILq~-----dV~EF~PYvfQIla~Lle~~~~~~~p-~~y~~L~~~Ll~p-~lWe~~gniPalvrLL~a~i~k~ 190 (435)
T PF03378_consen 122 FQEILQQ-----DVQEFIPYVFQILAQLLELRPSSPLP-DAYKQLFPPLLSP-ALWERRGNIPALVRLLQAYIKKD 190 (435)
T ss_dssp HHHHHHT-----T-TTTHHHHHHHHHHHHHHSS--S---TTTGGGHHHHTSG-GGGGSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCCCCc-HHHHHHHHHHcCc-chhccCCCcCcHHHHHHHHHHhC
Confidence 5566766 33467778889999999999922121 1233333332222 33343 44566667888888765
No 14
>KOG2023|consensus
Probab=90.61 E-value=20 Score=37.14 Aligned_cols=181 Identities=10% Similarity=0.076 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcC-------CC-c-----------cHHHHHHHHHHHhcCCcchHHH
Q psy12900 61 EHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKH-------PH-S-----------SFLYLGSILVDEYATSHCVSGL 121 (344)
Q Consensus 61 E~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~-------~~-~-----------~~L~l~s~lv~~fg~~~~~~~l 121 (344)
=-+-+|+......+|.+|.|+.+++.+...+..+++ .+ + +-|++.|-++.-.|. +..+.+
T Consensus 580 fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~-~ie~Lv 658 (885)
T KOG2023|consen 580 FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGS-HIEPLV 658 (885)
T ss_pred HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhh-chHHHh
Confidence 346678888888999999999999876655544421 11 1 236777777777765 333332
Q ss_pred HHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHH
Q psy12900 122 LDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYD 201 (344)
Q Consensus 122 ~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~ 201 (344)
.+ +.+..-.++.+ .++-||+=+..|.|...+.+.|+..+.+. +...+..-.+.+...+..++..|+--+-+
T Consensus 659 a~--snl~~lll~C~-----~D~~peVRQS~FALLGDltk~c~~~v~p~--~~~fl~~lg~Nl~~~~isv~nNA~WAiGe 729 (885)
T KOG2023|consen 659 AQ--SNLLDLLLQCL-----QDEVPEVRQSAFALLGDLTKACFEHVIPN--LADFLPILGANLNPENISVCNNAIWAIGE 729 (885)
T ss_pred hh--ccHHHHHHHHh-----ccCChHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHhhcCChhhchHHHHHHHHHHH
Confidence 22 11222223333 35779999999999999999998887654 22222211134444444455555444444
Q ss_pred HhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHch-hccCccchhcHHHHHHHHHHhCHHH
Q psy12900 202 LIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACV-FSLHTYMMADVADVLYELISVDRQV 276 (344)
Q Consensus 202 li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~-g~~prs~~~~~a~vL~~L~~~~~~~ 276 (344)
+.......- + ++-..++..|+.-+- -..|++.++..|=.+..|...+|+.
T Consensus 730 ia~k~g~~~-----------------~--------~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~ 780 (885)
T KOG2023|consen 730 IALKMGLKM-----------------K--------QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEE 780 (885)
T ss_pred HHHHhchhh-----------------h--------hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHh
Confidence 433322111 0 111222233332222 2466677777777777777777754
No 15
>KOG1241|consensus
Probab=88.45 E-value=36 Score=35.81 Aligned_cols=84 Identities=12% Similarity=0.086 Sum_probs=57.4
Q ss_pred cchhhHHHHHHHHhhhccCccCCCCcchHHHHHhh-hhHHHH----HH-----H--hccchHHHHHHHHHHHHHHHHhhh
Q psy12900 9 VSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNK-GTIFKT----CE-----T--YQQDARVMEHSSRCLRYAIRCVGK 76 (344)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i-pil~~i----l~-----~--~~~d~~vvE~~c~~lr~~~r~~~~ 76 (344)
++|.|...|+..-++|+- .+.-|.+..+++ +++..= ++ . -..-.++-.-+|.++...+|.++.
T Consensus 514 qsNLR~AAYeALmElIk~-----st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~ 588 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKN-----STDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS 588 (859)
T ss_pred hhhHHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence 567788888888888864 344567777776 544431 11 1 111244555689999999999988
Q ss_pred hhHHhHHHHHHHHHHHHhcCC
Q psy12900 77 DFAHLLEPLVKQIVVLYSKHP 97 (344)
Q Consensus 77 ~~~pll~~i~~~l~~~f~~~~ 97 (344)
+..+....+.+.+.+.|+..+
T Consensus 589 ~~~~~~d~iM~lflri~~s~~ 609 (859)
T KOG1241|consen 589 DIREVSDQIMGLFLRIFESKR 609 (859)
T ss_pred cchhHHHHHHHHHHHHHcCCc
Confidence 888888888888888887633
No 16
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=87.69 E-value=9.8 Score=33.62 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHhcCCcchHHHHHHHHHhHHHH-HH
Q psy12900 57 ARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFL-YLGSILVDEYATSHCVSGLLDMVQAFLPPT-YA 134 (344)
Q Consensus 57 ~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L-~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~-~~ 134 (344)
..|+..+|.+++...+.++.++.|+++.++..|......+. .++ .-+..++..+-. .+. .. ..+ +.
T Consensus 67 s~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~--~~i~~~a~~~L~~i~~-~~~-~~--------~~~~~~ 134 (228)
T PF12348_consen 67 SKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSK--KFIREAANNALDAIIE-SCS-YS--------PKILLE 134 (228)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG-----HHHHHHHHHHHHHHHT-TS--H----------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHcccc--HHHHHHHHHHHHHHHH-HCC-cH--------HHHHHH
Confidence 66899999999999999999999998888877766655432 121 222222222222 111 00 111 22
Q ss_pred hhcCCCCCCCCCchHHHHHHHHHHHHHhCc---ccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHH
Q psy12900 135 ILQEEDGLKNHPDTVDDLFRLCTRFLQRAP---IAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDL 202 (344)
Q Consensus 135 ~l~~~~~~~~~PDvved~f~L~~r~l~~~P---~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~l 202 (344)
.+... .-.-+|.+=.....++..++..+| ..+-....+..+......++.-.+.++=.++-+-+..+
T Consensus 135 ~l~~~-~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 135 ILSQG-LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHH-TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHH-HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 22221 223568888999999999999999 33322333556666555565544444433333333333
No 17
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.39 E-value=11 Score=32.05 Aligned_cols=127 Identities=11% Similarity=0.077 Sum_probs=84.4
Q ss_pred HHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhC-cccccCc--hhhHHHHHHHHHhcccCcch-hHHHHHHH
Q psy12900 123 DMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRA-PIAFLTS--SFISSVMQCGILATHLDHRE-ANSTVMKF 198 (344)
Q Consensus 123 ~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~-P~~ll~s--~~l~~l~~~al~~L~~~e~~-~~~aa~~F 198 (344)
..+..+..+..+++++. +|+---.-..|+...++.| |..|... +-+..++. -|.-+++. ..++++.-
T Consensus 21 ~~l~~l~~ri~~LL~s~-----~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~----~L~~~~~~~~~~~ai~~ 91 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSK-----SAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLS----ILEKPDPPSVLEAAIIT 91 (165)
T ss_pred HHHHHHHHHHHHHhCCC-----ChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHcCCCCHHHHHHHHHH
Confidence 34456666677788773 2333445667788888888 6655433 22344333 33334443 46788888
Q ss_pred HHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHHhCHHHHH
Q psy12900 199 FYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSN 278 (344)
Q Consensus 199 l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~~~~~~~ 278 (344)
+..++....+.+ +..+++..++-+.++..++.-+-. .+..+..-+.|..++..||..++
T Consensus 92 L~~l~~~~~~~p------------------~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~r 150 (165)
T PF08167_consen 92 LTRLFDLIRGKP------------------TLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFR 150 (165)
T ss_pred HHHHHHHhcCCC------------------chHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCcccc
Confidence 999988765543 245777788888888888876653 67778888999999999997654
Q ss_pred H
Q psy12900 279 Q 279 (344)
Q Consensus 279 ~ 279 (344)
+
T Consensus 151 p 151 (165)
T PF08167_consen 151 P 151 (165)
T ss_pred c
Confidence 3
No 18
>KOG1410|consensus
Probab=87.34 E-value=24 Score=36.70 Aligned_cols=65 Identities=6% Similarity=-0.040 Sum_probs=46.4
Q ss_pred CCCCCCchHHHHHHHHHHHHHhCcccccC--chhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhc
Q psy12900 141 GLKNHPDTVDDLFRLCTRFLQRAPIAFLT--SSFISSVMQCGILATHLDHREANSTVMKFFYDLIHN 205 (344)
Q Consensus 141 ~~~~~PDvved~f~L~~r~l~~~P~~ll~--s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~ 205 (344)
++-+.+-+.+.||.|+.-..+.+=..+.. .+++..++...-.||+--+.-...++|.-+..+++.
T Consensus 872 D~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssccsslD~i~tY 938 (1082)
T KOG1410|consen 872 DLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSCCSSLDTIVTY 938 (1082)
T ss_pred HHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHHHHHHHHHHHH
Confidence 55678889999999999888776554432 246788887777777766666666666666666554
No 19
>KOG2171|consensus
Probab=86.69 E-value=54 Score=35.96 Aligned_cols=237 Identities=14% Similarity=0.074 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHhcC--CcchHHHHHHHHHhHHHHHHhh
Q psy12900 63 SSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHS----SFLYLGSILVDEYAT--SHCVSGLLDMVQAFLPPTYAIL 136 (344)
Q Consensus 63 ~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~----~~L~l~s~lv~~fg~--~~~~~~l~~~~~~l~~~~~~~l 136 (344)
+|..+...-..++.+|.|++.++++..+-...-..|- +++...-.++...-. +.+...+.++...++...+..+
T Consensus 662 A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l 741 (1075)
T KOG2171|consen 662 ACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKAL 741 (1075)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHh
Confidence 6777887788888999999999888433333333332 222222222221111 1223377788888887777777
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCcc
Q psy12900 137 QEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKK 216 (344)
Q Consensus 137 ~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~ 216 (344)
.. .-.++++.++++=+...++-+....+..+....+..-....+. + ++-..-........ ++-
T Consensus 742 ~~----E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l-~---------~~~~~~~r~~~~~e-ed~-- 804 (1075)
T KOG2171|consen 742 EE----EPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLL-Q---------HFKRMQDRQEEDDE-EDD-- 804 (1075)
T ss_pred hc----CCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHH-H---------HHHHHHhhhhhhhh-hhh--
Confidence 66 3578999999999999999988776655544433321111110 0 11111111111000 000
Q ss_pred ccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHHhCHHHHHHHHHHHHhhCCCCCCCCC
Q psy12900 217 KAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGM 296 (344)
Q Consensus 217 ~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~~~~~~~~Wl~~~l~~lp~~~~~~~ 296 (344)
.....+... .-+..+...+..++..++++..|++-.....-.-.++-.+.+..+.. ++|-.-++..+=. +.
T Consensus 805 ---d~~eee~~~-e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~~av~~~~d~ie----~~ 875 (1075)
T KOG2171|consen 805 ---DIEEEEDLD-EQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA-RQWAVCIFDDLIE----GC 875 (1075)
T ss_pred ---hhHHHHHHh-hhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHH----hc
Confidence 000000111 11234556667788888888888776555554444444455566666 9999888776522 24
Q ss_pred CCCCHHHHHHHHHHHHhchh--hcHHHHHHH
Q psy12900 297 NAATPEQLIEFHSQVTRSES--AYDVGQALK 325 (344)
Q Consensus 297 ~~vt~~~k~~F~~~l~~~~~--~r~~~~~v~ 325 (344)
...+..-++.|.-.++..-. ...+|++..
T Consensus 876 ~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAs 906 (1075)
T KOG2171|consen 876 GEASAKYKERFLPLVLEALQDSDPEVRQAAA 906 (1075)
T ss_pred ccccchHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 46778889999999988753 245665543
No 20
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.92 E-value=37 Score=33.30 Aligned_cols=58 Identities=7% Similarity=0.147 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcC
Q psy12900 148 TVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 148 vved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~ 206 (344)
.=..|+--...++++.|..++ .+.++.++.+-+.+|.+++.+...++++-+..++...
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl-~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVL-LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 667889999999999998764 3456777777888999999999999999999998753
No 21
>KOG1992|consensus
Probab=85.41 E-value=55 Score=34.85 Aligned_cols=173 Identities=13% Similarity=0.226 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH---hcCCCc----cHH-HHHHHHHHHhcCCcchHHHHHHHHHhHHHH
Q psy12900 61 EHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLY---SKHPHS----SFL-YLGSILVDEYATSHCVSGLLDMVQAFLPPT 132 (344)
Q Consensus 61 E~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f---~~~~~~----~~L-~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~ 132 (344)
|-+.+++-++++.......|..|+++.++.+.. .++|.. .|| ...+.++..-++ .....+....+.+....
T Consensus 566 eylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~-~~~~~vs~~e~aL~p~f 644 (960)
T KOG1992|consen 566 EYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCK-ANPSAVSSLEEALFPVF 644 (960)
T ss_pred HHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHH
Confidence 344455555555655556566666655554333 334443 343 455666666555 22223333333333323
Q ss_pred HHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCch-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCc
Q psy12900 133 YAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSS-FISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSD 211 (344)
Q Consensus 133 ~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~-~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~ 211 (344)
..+|++ |.-|.+---|.+.+..+..+-. +.| .+..++++-+.--.=.-++-+-+..+.+..++..+...-.
T Consensus 645 q~Il~e-----DI~EfiPYvfQlla~lve~~~~---~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~ 716 (960)
T KOG1992|consen 645 QTILSE-----DIQEFIPYVFQLLAVLVEHSSG---TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVE 716 (960)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHhcCC---CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhc
Confidence 333333 2233333344455555555444 111 2334444322111112234456677788888877533220
Q ss_pred ccCccccCCcchhHHHHHHHHHHHH-----HhhHHHHHHHHHHc
Q psy12900 212 KDGKKKAVSEEDFDMRHRLMKDIVS-----KHGQALVSNLLQAC 250 (344)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~i~~~l~-----~~G~~Lv~~ll~~l 250 (344)
.-.+.+..-.+.+.++. .+|-.|+..++..+
T Consensus 717 --------~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~ 752 (960)
T KOG1992|consen 717 --------AADKLSGILGIFQKLIASKANDHHGFYLLNTIIESI 752 (960)
T ss_pred --------ccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcC
Confidence 00112344556666665 78888877777655
No 22
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=85.34 E-value=41 Score=33.35 Aligned_cols=155 Identities=10% Similarity=0.139 Sum_probs=77.9
Q ss_pred hHHHHHhh-hhHHHHHHHhccchH----HHHHHHHHHHHHHHHhhh---hhHHhHHHHHHHHHHHHhcCCCccHHHHHHH
Q psy12900 36 CPFVCVNK-GTIFKTCETYQQDAR----VMEHSSRCLRYAIRCVGK---DFAHLLEPLVKQIVVLYSKHPHSSFLYLGSI 107 (344)
Q Consensus 36 ~~~~~~~i-pil~~il~~~~~d~~----vvE~~c~~lr~~~r~~~~---~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~ 107 (344)
+..+++++ .++..+.++ ++++. +-|.+|.++|..-..-.. .+.+.+=+++..+.+.--..-.|..+.+.+.
T Consensus 65 ~~~il~~L~~il~~v~kN-PsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~ 143 (435)
T PF03378_consen 65 AVEILQHLTAILKEVSKN-PSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQ 143 (435)
T ss_dssp HHHHHHHHHHHHHHHHTS----HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555 555554443 44444 456666666654332222 2333332222222222222334566678888
Q ss_pred HHHHhcC----CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHh
Q psy12900 108 LVDEYAT----SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILA 183 (344)
Q Consensus 108 lv~~fg~----~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~ 183 (344)
+++.... +.|.+.+. -+ + +. .+-+.++=+-+..||+..|+++.|..+...+.++.++..--..
T Consensus 144 Lle~~~~~~~p~~y~~L~~----~L-------l-~p-~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkL 210 (435)
T PF03378_consen 144 LLELRPSSPLPDAYKQLFP----PL-------L-SP-ALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKL 210 (435)
T ss_dssp HHHHSS--S--TTTGGGHH----HH-------T-SG-GGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHH
T ss_pred HHHcCCCCCCcHHHHHHHH----HH-------c-Cc-chhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHH
Confidence 8887762 23332222 11 1 22 3445566778999999999999999987666666555443334
Q ss_pred cccCcchhHHHHHHHHHHHhhcC
Q psy12900 184 THLDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 184 L~~~e~~~~~aa~~Fl~~li~~~ 206 (344)
+...-.| ..+++.+..++...
T Consensus 211 i~sk~~D--~~gF~LL~~iv~~~ 231 (435)
T PF03378_consen 211 IASKAND--HYGFDLLESIVENL 231 (435)
T ss_dssp HT-TTCH--HHHHHHHHHHHHHS
T ss_pred HCCCCcc--hHHHHHHHHHHHHC
Confidence 4433333 24677888888765
No 23
>KOG1824|consensus
Probab=84.77 E-value=64 Score=35.03 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhccCccCCCCcchHHHHHhhhhHHHHHHH---hccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHH
Q psy12900 14 LALSQHFTKHVQHSAVCRCSFLCPFVCVNKGTIFKTCET---YQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIV 90 (344)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ipil~~il~~---~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~ 90 (344)
|.+-+.+-|.+.|..++..-. .-+.+. +++...+.+ --.|-+|=|++-.|+...+-.+|......+|.++..+.
T Consensus 541 L~v~~~lvkvirpl~~~~~~d-~~~~v~--~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~ 617 (1233)
T KOG1824|consen 541 LLVCQQLVKVIRPLQPPSSFD-ASPYVK--TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILL 617 (1233)
T ss_pred HHHHHHHHHHhcccCCCccCC-CChhHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 455667778877654422211 112222 444444444 35689999999999999999999777767777666665
Q ss_pred HHHhc
Q psy12900 91 VLYSK 95 (344)
Q Consensus 91 ~~f~~ 95 (344)
...+.
T Consensus 618 eRl~n 622 (1233)
T KOG1824|consen 618 ERLGN 622 (1233)
T ss_pred HHHhc
Confidence 55543
No 24
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=84.29 E-value=30 Score=30.83 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=88.5
Q ss_pred CCCCCCchHHHHHHHHHHHHHhCcccccCc-hhhHHHHHHHHHhccc-----------Ccchh--HHHHHHHHHHHhhcC
Q psy12900 141 GLKNHPDTVDDLFRLCTRFLQRAPIAFLTS-SFISSVMQCGILATHL-----------DHREA--NSTVMKFFYDLIHNN 206 (344)
Q Consensus 141 ~~~~~PDvved~f~L~~r~l~~~P~~ll~s-~~l~~l~~~al~~L~~-----------~e~~~--~~aa~~Fl~~li~~~ 206 (344)
...+.+++-....+++..++++++..+... |.+..+++.-+.++.. ...+. +++-.++++.+....
T Consensus 47 ~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep~ 126 (223)
T PF10441_consen 47 SADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQRLLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEPS 126 (223)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHHHHHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCcc
Confidence 567788888888899999999999987754 5555555544444441 11122 566677777777661
Q ss_pred CCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHch-hccCccchhcHHHHHHHHHHhCHHHHHHHHHHHH
Q psy12900 207 RVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACV-FSLHTYMMADVADVLYELISVDRQVSNQWLQDTI 285 (344)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~-g~~prs~~~~~a~vL~~L~~~~~~~~~~Wl~~~l 285 (344)
.... .+. ..+....-.......+.+|-+-|+.+-+.... +.++++.-+.+..-++++...+...-.+.+..+|
T Consensus 127 ~~~~---~~~---~~~~l~~~~~~~k~~~~kh~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~L 200 (223)
T PF10441_consen 127 SVSR---SSK---KTSSLTSATSSAKKSLRKHAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHELQQLNASL 200 (223)
T ss_pred cccc---ccc---ccccccHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 1111 000 11112233445677888899999998888875 4677777777777777777777665555555554
No 25
>KOG1241|consensus
Probab=82.69 E-value=69 Score=33.83 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=90.6
Q ss_pred HHHhh-hhHHHHHHHhc-----cchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Q psy12900 39 VCVNK-GTIFKTCETYQ-----QDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEY 112 (344)
Q Consensus 39 ~~~~i-pil~~il~~~~-----~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~f 112 (344)
.++.+ |+|.+.+.+.. .|..+..++.-||.-.-+++|.+..| .++.++-+.++... =-+- ...+--|
T Consensus 316 a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~---~Vl~Fiee~i~~pd-wr~r---eaavmAF 388 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP---HVLPFIEENIQNPD-WRNR---EAAVMAF 388 (859)
T ss_pred HHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh---hhHHHHHHhcCCcc-hhhh---hHHHHHH
Confidence 34567 99999999844 44677888999999889999886555 55555555554321 1111 2234456
Q ss_pred cC---CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcc
Q psy12900 113 AT---SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHR 189 (344)
Q Consensus 113 g~---~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~ 189 (344)
|+ .-....+..+..........++..+ ..--. |+.+= -+.|+.+.+|....+...++.++.+.+.+|.- |+
T Consensus 389 GSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~Vk-dTaAw---tlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-eP 462 (859)
T KOG1241|consen 389 GSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVK-DTAAW---TLGRIADFLPEAIINQELLQSKLSALLEGLND-EP 462 (859)
T ss_pred HhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhc-chHHH---HHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-Cc
Confidence 66 1223345555545444445555432 22111 44442 35678888898777666788888888888764 44
Q ss_pred hhHHHHHHHHHHHhhc
Q psy12900 190 EANSTVMKFFYDLIHN 205 (344)
Q Consensus 190 ~~~~aa~~Fl~~li~~ 205 (344)
-....+|--+..|...
T Consensus 463 rva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEA 478 (859)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 26
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=80.22 E-value=79 Score=32.89 Aligned_cols=162 Identities=11% Similarity=0.119 Sum_probs=93.7
Q ss_pred HHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHhcC-C
Q psy12900 40 CVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPH--SSFLYLGSILVDEYAT-S 115 (344)
Q Consensus 40 ~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~--~~~L~l~s~lv~~fg~-~ 115 (344)
+.+| .++.+|++. ++|+.++|+.-.-+-+.+...+-++- +...|++.+...|...|. ...|.+..-+++ .|+ |
T Consensus 190 F~qIF~lc~qiLE~-~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~s~pd~r~~tl~CLtEi~~-L~~~p 266 (1053)
T COG5101 190 FPQIFGLCKQILEY-SRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFNSMPDTRVATLSCLTEIVD-LGRHP 266 (1053)
T ss_pred HHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhccCCchhHHHHHHHHHHHh-hccCc
Confidence 4456 667776664 77888988876665555554433322 457789999999998776 444544433333 565 5
Q ss_pred cchHHHHHHHHHhHHHHHHh-h-cCC-----------CCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHH
Q psy12900 116 HCVSGLLDMVQAFLPPTYAI-L-QEE-----------DGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGIL 182 (344)
Q Consensus 116 ~~~~~l~~~~~~l~~~~~~~-l-~~~-----------~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~ 182 (344)
...+...+.+....+.+... . +.. +.-.+.-+-+.++--+.+.++..+-..+- ++.....+.-|..
T Consensus 267 q~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~~lLE-~~e~~e~llnah~ 345 (1053)
T COG5101 267 QENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYISLLE-AREMAENLLNAHG 345 (1053)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHH
Confidence 44433333222211111111 0 100 12235566778888888888888777543 3332222222332
Q ss_pred h----cccCcchhHHHHHHHHHHHhhc
Q psy12900 183 A----THLDHREANSTVMKFFYDLIHN 205 (344)
Q Consensus 183 ~----L~~~e~~~~~aa~~Fl~~li~~ 205 (344)
- -...||+.-+.++.+|..++..
T Consensus 346 YLiqiSrInereiFkt~leyW~klVad 372 (1053)
T COG5101 346 YLIQISRINEREIFKTALEYWNKLVAD 372 (1053)
T ss_pred HhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 2 2479999999999999887653
No 27
>KOG1991|consensus
Probab=79.46 E-value=99 Score=33.59 Aligned_cols=140 Identities=12% Similarity=0.073 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHhcC-CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCc-hhhHHHH
Q psy12900 100 SFLYLGSILVDEYAT-SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS-SFISSVM 177 (344)
Q Consensus 100 ~~L~l~s~lv~~fg~-~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s-~~l~~l~ 177 (344)
+.|.+.+.+.+..-+ ..+.+.+..+ +.++++..|++..+. +-..-..++++|- .+=+.+ ..+..++
T Consensus 437 GAL~~vgsl~~~L~K~s~~~~~mE~f---lv~hVfP~f~s~~g~-----Lrarac~vl~~~~----~~df~d~~~l~~al 504 (1010)
T KOG1991|consen 437 GALRMVGSLASILLKKSPYKSQMEYF---LVNHVFPEFQSPYGY-----LRARACWVLSQFS----SIDFKDPNNLSEAL 504 (1010)
T ss_pred hHHHHHHHHHHHHccCCchHHHHHHH---HHHHhhHhhcCchhH-----HHHHHHHHHHHHH----hccCCChHHHHHHH
Confidence 345666666666655 4444444443 455678777774232 2222233333321 121333 3578889
Q ss_pred HHHHHhcc-cCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCc
Q psy12900 178 QCGILATH-LDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHT 256 (344)
Q Consensus 178 ~~al~~L~-~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~pr 256 (344)
++...||. -.|...-..|.--|..+|+....+ .+.+.+|-+.++..+|.-.- .
T Consensus 505 e~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~----------------------~e~~~~hvp~~mq~lL~L~n----e 558 (1010)
T KOG1991|consen 505 ELTHNCLLNDNELPVRVEAALALQSFISNQEQA----------------------DEKVSAHVPPIMQELLKLSN----E 558 (1010)
T ss_pred HHHHHHhccCCcCchhhHHHHHHHHHHhcchhh----------------------hhhHhhhhhHHHHHHHHHHH----h
Confidence 99999997 566665555555667777665333 23344444555555554332 2
Q ss_pred cchhcHHHHHHHHHHhCHHHH
Q psy12900 257 YMMADVADVLYELISVDRQVS 277 (344)
Q Consensus 257 s~~~~~a~vL~~L~~~~~~~~ 277 (344)
...++++.++-+++..|+++.
T Consensus 559 ~End~Lt~vme~iV~~fseEl 579 (1010)
T KOG1991|consen 559 VENDDLTNVMEKIVCKFSEEL 579 (1010)
T ss_pred cchhHHHHHHHHHHHHHHHhh
Confidence 345667777777777776553
No 28
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=74.99 E-value=1.2e+02 Score=32.19 Aligned_cols=215 Identities=10% Similarity=0.003 Sum_probs=108.3
Q ss_pred CCCcchHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc-------CC-----
Q psy12900 31 RCSFLCPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSK-------HP----- 97 (344)
Q Consensus 31 ~~~~p~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~-------~~----- 97 (344)
++.|+.. -+.+ +++++++.. +++. =++.+..|+...+..+.++..|+.++++..+++.|-+ ++
T Consensus 530 ~q~h~k~--sahVp~tmekLLsL-Sn~f-eiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s 605 (970)
T COG5656 530 EQSHEKF--SAHVPETMEKLLSL-SNTF-EIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSS 605 (970)
T ss_pred hhhhHHH--HhhhhHHHHHHHHh-cccc-cchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 4445433 4567 777777754 2221 1567777888888888888999999988888876532 11
Q ss_pred --------CccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCccccc-
Q psy12900 98 --------HSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFL- 168 (344)
Q Consensus 98 --------~~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll- 168 (344)
.+.+|...+++|..+- .....++.+.+.+...+-=++.+ -+.||++=+-.++..+.-..-
T Consensus 606 ~vDDKqmaasGiL~T~~smiLSle--n~p~vLk~le~slypvi~Filkn---------~i~dfy~Ea~dildg~tf~ske 674 (970)
T COG5656 606 VVDDKQMAASGILRTIESMILSLE--NRPLVLKYLEVSLYPVISFILKN---------EISDFYQEALDILDGYTFMSKE 674 (970)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHHhhhhHHHHH
Confidence 0123444444444442 22223333333332222111222 122333333333333322210
Q ss_pred CchhhHHHHHHHHHhcccCcc-hhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHH---------HHh
Q psy12900 169 TSSFISSVMQCGILATHLDHR-EANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIV---------SKH 238 (344)
Q Consensus 169 ~s~~l~~l~~~al~~L~~~e~-~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l---------~~~ 238 (344)
-.|....+++.-..++.-..+ +=.-.+..++..+|..++..-.. .+-+......+.+..+ ..+
T Consensus 675 I~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~-------~~~y~~i~~eI~~~~l~sE~n~l~D~~~ 747 (970)
T COG5656 675 IEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMD-------AGIYGSICSEISKLCLCSEENFLEDFIG 747 (970)
T ss_pred hhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccc-------ccchhHHHHHHHHHHHcchhhhHHHHHH
Confidence 014444555555545443332 33667888999999998543200 1122223333333222 133
Q ss_pred hHHHHHHHHHHchhccCccchhcHHHHHH
Q psy12900 239 GQALVSNLLQACVFSLHTYMMADVADVLY 267 (344)
Q Consensus 239 G~~Lv~~ll~~l~g~~prs~~~~~a~vL~ 267 (344)
+=.|+..++.++.++++..-++-+++|..
T Consensus 748 vc~i~e~l~Ln~rd~Ll~qy~plfi~vag 776 (970)
T COG5656 748 VCRIIESLILNIRDELLSQYLPLFISVAG 776 (970)
T ss_pred HHHHHHHHHHHccchhHHhhhHHHHHHHh
Confidence 45666777777776666666665555544
No 29
>KOG1992|consensus
Probab=73.85 E-value=1.3e+02 Score=32.17 Aligned_cols=303 Identities=13% Similarity=0.130 Sum_probs=140.8
Q ss_pred cccccccchhhH--HHHHHHHhhhccCcc--CCCCcchHHHH--------------Hhh-hhHHHHHHHhccchHHHHH-
Q psy12900 3 QSQVLGVSRAEL--ALSQHFTKHVQHSAV--CRCSFLCPFVC--------------VNK-GTIFKTCETYQQDARVMEH- 62 (344)
Q Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~p~~~~~--------------~~i-pil~~il~~~~~d~~vvE~- 62 (344)
|.+..|++..-- .+..-|...+.|+.. ..-+||++.+- +.+ ..+..+.+....+..|++.
T Consensus 438 ~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsY 517 (960)
T KOG1992|consen 438 QTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSY 517 (960)
T ss_pred chhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHH
Confidence 456777766542 233333355555333 23456665532 112 3444445555666666664
Q ss_pred HHHHHHHHHHHhhh---------hhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC--CcchHHHHHHHHHhHHH
Q psy12900 63 SSRCLRYAIRCVGK---------DFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT--SHCVSGLLDMVQAFLPP 131 (344)
Q Consensus 63 ~c~~lr~~~r~~~~---------~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~--~~~~~~l~~~~~~l~~~ 131 (344)
+-.++.+.+..... ...|++..++..+...+......--=|++..+-..++- +...+....++..+.+.
T Consensus 518 AA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Ltei 597 (960)
T KOG1992|consen 518 AAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEI 597 (960)
T ss_pred HHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHH
Confidence 22333333332222 13333334433333333332222233566666666665 22223344445555554
Q ss_pred HHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCc-----hhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcC
Q psy12900 132 TYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS-----SFISSVMQCGILATHLDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 132 ~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s-----~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~ 206 (344)
+...-+++.++.-+--+-|..--++.+.-+..|+.+-.- |.++.+++ -+=.|-+-.+++.+..++..+
T Consensus 598 v~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~-------eDI~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 598 VEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILS-------EDIQEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred HHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 544445543333333344444444444444455543211 22233222 333455678888888888887
Q ss_pred CCCCcccCccccCCcchhHHHHHHHHHHH-HH--hhHHHHHHHHHHchhccCccc-----hhcHHHHHHHHHHhC-HHH-
Q psy12900 207 RVLSDKDGKKKAVSEEDFDMRHRLMKDIV-SK--HGQALVSNLLQACVFSLHTYM-----MADVADVLYELISVD-RQV- 276 (344)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l-~~--~G~~Lv~~ll~~l~g~~prs~-----~~~~a~vL~~L~~~~-~~~- 276 (344)
.... |.++++-....+...+ .. +-+++|+ |++++...-|... ++.+-.++-.|+..- -++
T Consensus 671 ~~~i---------p~~~~~l~~~lLsp~lW~r~gNipalvr-Ll~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~ 740 (960)
T KOG1992|consen 671 SGTI---------PDSYSPLFPPLLSPNLWKRSGNIPALVR-LLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHH 740 (960)
T ss_pred CCCC---------chhHHHHHHHhcCHHHHhhcCCcHHHHH-HHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchh
Confidence 6533 3333333333333222 12 2234443 3334333222222 334444555554311 122
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhhc--HHHHHHHHHH
Q psy12900 277 SNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAY--DVGQALKELS 328 (344)
Q Consensus 277 ~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~r--~~~~~v~~F~ 328 (344)
-=..|.+++..+|.. .+.+-.|+-|...+.|-+++| ++...+-.|-
T Consensus 741 GF~LLn~i~~~~~~~------~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~ 788 (960)
T KOG1992|consen 741 GFYLLNTIIESIPPN------ELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFF 788 (960)
T ss_pred HHHHHHHHHhcCCHh------hhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 223445566666554 567788888888887777664 4444444443
No 30
>KOG2020|consensus
Probab=70.80 E-value=1.8e+02 Score=32.33 Aligned_cols=153 Identities=15% Similarity=0.185 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHH
Q psy12900 81 LLEPLVKQIVVLYSK----HPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLC 156 (344)
Q Consensus 81 ll~~i~~~l~~~f~~----~~~~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~ 156 (344)
++|+++....-.|.. .+.+..+.+-+.++...|. .....+...+.+....++...+. ++.+.||.-..||.+.
T Consensus 762 ~~~~~~~~~~fd~~~nvPd~r~~~vl~l~~~iv~~Lg~-~i~~~~~~i~~~v~~c~l~m~~~--d~qe~~e~~~~f~~ll 838 (1041)
T KOG2020|consen 762 LVPPLLDAVLFDYLDNVPDYRENEVLSLNATIVPKLGE-FIPAELPLINIAVLECTLEMINK--DFQEYPEHRLNFLLLL 838 (1041)
T ss_pred hhhHHHHHHHHHHHccCcchhcchHHHhhhhhhhhhhh-HhhhhccHHHHHHHhhhhhcccc--ccccchHHHHHHHHHH
Confidence 345554444434432 3334555666667777776 11111112223333334444444 8899999999999999
Q ss_pred HHHHHhCcccccC--chhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHH
Q psy12900 157 TRFLQRAPIAFLT--SSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDI 234 (344)
Q Consensus 157 ~r~l~~~P~~ll~--s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (344)
..+...++.++.. ++.+..+.+...-+.....|+...+.+.-+..+.....+.. ...+..
T Consensus 839 e~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h~~r~i~~~~l~~l~~l~k~~~~~~------------------~~~~~~ 900 (1041)
T KOG2020|consen 839 EALLLFCFPAFSELPADQVKLVSDSIVWAFHHTMRNIAENGLNILLELLKNLAEME------------------KFANAF 900 (1041)
T ss_pred HHHHHhhhHHHHcCCchhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhh------------------HHHHHH
Confidence 9999998888764 34455666666666666677777777777777776542221 133455
Q ss_pred HHHhhHHHHHHHHHHchhcc
Q psy12900 235 VSKHGQALVSNLLQACVFSL 254 (344)
Q Consensus 235 l~~~G~~Lv~~ll~~l~g~~ 254 (344)
+.+++..+....+.-+.+..
T Consensus 901 ~~~~~~~~l~~~~~~~~~~~ 920 (1041)
T KOG2020|consen 901 YQTYFLSLLQKIIAVLTDTD 920 (1041)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 55555555555555544433
No 31
>KOG2081|consensus
Probab=69.73 E-value=1.3e+02 Score=30.64 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCCCCchHHHHHHHHHHHHHhCcccccCch-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccC
Q psy12900 141 GLKNHPDTVDDLFRLCTRFLQRAPIAFLTSS-FISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAV 219 (344)
Q Consensus 141 ~~~~~PDvved~f~L~~r~l~~~P~~ll~s~-~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~ 219 (344)
...+++|..+++-|++....+.+=......| .+-.+++.-+..-..++.+.+...+.||..+=..-....
T Consensus 256 ~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~--------- 326 (559)
T KOG2081|consen 256 MAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTD--------- 326 (559)
T ss_pred hcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccc---------
Confidence 4468889999999988887776555555444 344556666666678888999999999988765543332
Q ss_pred CcchhHHHHHHHHHHHHHhhHHHHHHHHHHch
Q psy12900 220 SEEDFDMRHRLMKDIVSKHGQALVSNLLQACV 251 (344)
Q Consensus 220 ~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~ 251 (344)
......++.++-..|++.+..-+.
T Consensus 327 --------~~~~~~~frpy~~rLvs~l~~h~q 350 (559)
T KOG2081|consen 327 --------DDEALGIFRPYFLRLVSLLKRHVQ 350 (559)
T ss_pred --------cHHHHHHhHHHHHHHHHHHHHHcc
Confidence 123345677788888888887775
No 32
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=68.24 E-value=21 Score=28.40 Aligned_cols=79 Identities=18% Similarity=0.135 Sum_probs=49.2
Q ss_pred HHHHchhccCccchhcHHHHHHHHHHhCH--HHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhhc----H
Q psy12900 246 LLQACVFSLHTYMMADVADVLYELISVDR--QVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAY----D 319 (344)
Q Consensus 246 ll~~l~g~~prs~~~~~a~vL~~L~~~~~--~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~r----~ 319 (344)
++.+....-.....+.+...|......-| ....+-+.++.+-+-. .+|++||+.|.+.+-.-+.++ .
T Consensus 18 ~va~~~~~~~~~~~~~Y~~~l~~al~~~~~~~~~~Nvl~Hi~Gyfk~-------~ls~~EK~~~~~~i~~yr~g~i~l~~ 90 (117)
T PF08349_consen 18 LVANAGKRPLEEVFEEYEELLMEALSKPPTRGSHINVLQHIFGYFKK-------KLSSEEKQHFLDLIEDYREGKIPLSV 90 (117)
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHcCCccHHH
Confidence 33333333334455666666666666554 3466777777776523 699999999999999888653 3
Q ss_pred HHHHHHHHHHHH
Q psy12900 320 VGQALKELSRLY 331 (344)
Q Consensus 320 ~~~~v~~F~~~c 331 (344)
....++.|+.-+
T Consensus 91 ~l~~L~~~~~ry 102 (117)
T PF08349_consen 91 PLTLLKHLARRY 102 (117)
T ss_pred HHHHHHHHHHHC
Confidence 444454444433
No 33
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=67.45 E-value=59 Score=31.49 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCcc------HHHHHHHHHHHhcC--C--cchHHHHHHHHHhHH
Q psy12900 61 EHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSS------FLYLGSILVDEYAT--S--HCVSGLLDMVQAFLP 130 (344)
Q Consensus 61 E~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~------~L~l~s~lv~~fg~--~--~~~~~l~~~~~~l~~ 130 (344)
.++|+++|...+..+....+.+...+..+.+.|...|..- .+++.+.+...-.. . ...+.+.++.+-+.+
T Consensus 229 ~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~ 308 (370)
T PF08506_consen 229 RAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQ 308 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHH
Confidence 3799999999998888888888888888888888887653 35555544433211 0 111233455555566
Q ss_pred HHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcc
Q psy12900 131 PTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHR 189 (344)
Q Consensus 131 ~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~ 189 (344)
.++.-|+ . +...+|=+--|.+.++..|-.. ++.+.+..+++..+.+|..++.
T Consensus 309 ~v~peL~-~-~~~~~piLka~aik~~~~Fr~~-----l~~~~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 309 HVLPELQ-P-DVNSHPILKADAIKFLYTFRNQ-----LPKEQLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp HTCHHHH---SS-S-HHHHHHHHHHHHHHGGG-----S-HHHHHHHHHHHHHHTTSS-H
T ss_pred HhHHHhc-c-cCCCCcchHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHHHhCCCCc
Confidence 6777777 3 6677887888888888877544 3445677788887778775553
No 34
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=65.01 E-value=97 Score=27.14 Aligned_cols=136 Identities=11% Similarity=0.120 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHh
Q psy12900 104 LGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILA 183 (344)
Q Consensus 104 l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~ 183 (344)
+.+.+....|. .+...++.+....+..+... ..-+.++--..+..++++++. .... ++.....+
T Consensus 76 ~l~~l~~~l~~-----~~~~~~~~~l~~Ll~~~~~~-----~~~i~~~a~~~L~~i~~~~~~---~~~~---~~~~l~~~ 139 (228)
T PF12348_consen 76 LLSDLARQLGS-----HFEPYADILLPPLLKKLGDS-----KKFIREAANNALDAIIESCSY---SPKI---LLEILSQG 139 (228)
T ss_dssp HHHHHHHHHGG-----GGHHHHHHHHHHHHHGGG--------HHHHHHHHHHHHHHHTTS-H-----HH---HHHHHHHH
T ss_pred HHHHHHHHHhH-----hHHHHHHHHHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHCCc---HHHH---HHHHHHHH
Confidence 44445555554 23344445555555555542 344667777777777777771 1111 13333335
Q ss_pred cccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhh--HHHHHHHHHHchhccCccchhc
Q psy12900 184 THLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHG--QALVSNLLQACVFSLHTYMMAD 261 (344)
Q Consensus 184 L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G--~~Lv~~ll~~l~g~~prs~~~~ 261 (344)
+.......-..+++++..++....... ..+...+ +.++..+..++. +.-....+.
T Consensus 140 ~~~Kn~~vR~~~~~~l~~~l~~~~~~~----------------------~~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~ 196 (228)
T PF12348_consen 140 LKSKNPQVREECAEWLAIILEKWGSDS----------------------SVLQKSAFLKQLVKALVKLLS-DADPEVREA 196 (228)
T ss_dssp TT-S-HHHHHHHHHHHHHHHTT---------------------------GGG--HHHHHHHHHHHHHHHT-SS-HHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHccchH----------------------hhhcccchHHHHHHHHHHHCC-CCCHHHHHH
Confidence 566666666788889999887754111 0111111 455666666664 666667777
Q ss_pred HHHHHHHHHHhCHHHHH
Q psy12900 262 VADVLYELISVDRQVSN 278 (344)
Q Consensus 262 ~a~vL~~L~~~~~~~~~ 278 (344)
.-.+++.+.+.+|+...
T Consensus 197 Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 197 ARECLWALYSHFPERAE 213 (228)
T ss_dssp HHHHHHHHHHHH-HHH-
T ss_pred HHHHHHHHHHHCCHhhc
Confidence 77899999999987653
No 35
>KOG2022|consensus
Probab=63.52 E-value=1.4e+02 Score=32.22 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=76.0
Q ss_pred CCCCCCchHHHHHHHHHHHHHhCccccc-CchhhHHHHHHHHHhccc--CcchhHHHHHHHHHHHhhcCCCCCcccCccc
Q psy12900 141 GLKNHPDTVDDLFRLCTRFLQRAPIAFL-TSSFISSVMQCGILATHL--DHREANSTVMKFFYDLIHNNRVLSDKDGKKK 217 (344)
Q Consensus 141 ~~~~~PDvved~f~L~~r~l~~~P~~ll-~s~~l~~l~~~al~~L~~--~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~ 217 (344)
+.+++||.+.-.+.++..+....-..=. .++.++.+|+. .+++++ ......++++.-+..+..+-++++
T Consensus 473 a~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~-~asik~S~~n~ql~~Tss~~igs~s~~l~e~P------- 544 (982)
T KOG2022|consen 473 AGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFET-SASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP------- 544 (982)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHh-ccccccccCChhHHHHHHHHHHHHHHHHhcCC-------
Confidence 4467999999999888877654433322 23567777773 334443 377888999888888888876665
Q ss_pred cCCcchhHH-HHHHHHHH-HHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHH-----hCHHHHHHHHHHHHhhC
Q psy12900 218 AVSEEDFDM-RHRLMKDI-VSKHGQALVSNLLQACVFSLHTYMMADVADVLYELIS-----VDRQVSNQWLQDTISQL 288 (344)
Q Consensus 218 ~~~~~~~~~-~~~~i~~~-l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~-----~~~~~~~~Wl~~~l~~l 288 (344)
-+..+ ....++.+ -.+..++-+.+ ++-+|.+.|.+..++...++-.+.. .+.+..+.|+..+++-+
T Consensus 545 ----~~ln~sl~~L~~~Lh~sk~s~q~i~t-l~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyv 617 (982)
T KOG2022|consen 545 ----MYLNPSLPLLFQGLHNSKESEQAIST-LKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYV 617 (982)
T ss_pred ----cccCchHHHHHHHhcCchHHHHHHHH-HHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHH
Confidence 01011 11112222 11222233333 6667766666665554444333332 22344677877776644
No 36
>KOG2274|consensus
Probab=62.97 E-value=2.1e+02 Score=31.09 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=35.1
Q ss_pred Hhh-hhHHHHHHHhccchHHHHHHHHHHHHHHH---HhhhhhHHhHHHHHHHH
Q psy12900 41 VNK-GTIFKTCETYQQDARVMEHSSRCLRYAIR---CVGKDFAHLLEPLVKQI 89 (344)
Q Consensus 41 ~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r---~~~~~~~pll~~i~~~l 89 (344)
..+ |.+-.+..+|..|+-|++-+=++++..+. +.|....-++|.++.-+
T Consensus 570 skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil 622 (1005)
T KOG2274|consen 570 SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVL 622 (1005)
T ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 357 99999999999999988888888887665 34443444555554444
No 37
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=61.76 E-value=45 Score=26.75 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHh-hhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-------CcchHHHHHHHHHhHH
Q psy12900 59 VMEHSSRCLRYAIRCV-GKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT-------SHCVSGLLDMVQAFLP 130 (344)
Q Consensus 59 vvE~~c~~lr~~~r~~-~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~-------~~~~~~l~~~~~~l~~ 130 (344)
|..++|.++-...... +..-..+++.+++.+... ....-.+|.+...+.+++.+ ...+..+.+.+..-..
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~~--~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~ 81 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQSS--PQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSP 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHH
Confidence 4455666655554443 333333555554443331 11222356666777776653 1223344444443344
Q ss_pred HHHHh----hcCCCCCCC-CCchHHHHHHHHHHHHHhCccccc-CchhhHHHHH
Q psy12900 131 PTYAI----LQEEDGLKN-HPDTVDDLFRLCTRFLQRAPIAFL-TSSFISSVMQ 178 (344)
Q Consensus 131 ~~~~~----l~~~~~~~~-~PDvved~f~L~~r~l~~~P~~ll-~s~~l~~l~~ 178 (344)
.++.. ++. .... +++++...++.+..++...|.-.+ .++.++.+++
T Consensus 82 ~i~~~l~~~l~~--~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~ 133 (148)
T PF08389_consen 82 DILEILSQILSQ--SSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQ 133 (148)
T ss_dssp HHHHHHHHHHHH--HCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHH
T ss_pred HHHHHHHHHHHh--hccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHH
Confidence 44444 433 2222 388899999999999886666543 3345555554
No 38
>KOG1824|consensus
Probab=60.67 E-value=1.7e+02 Score=31.98 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=29.4
Q ss_pred CCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcc
Q psy12900 143 KNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATH 185 (344)
Q Consensus 143 ~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~ 185 (344)
.++-|+-|-.+.-+..|+++||.-+.+ ..+.++...+..++
T Consensus 268 ~~dDELrE~~lQale~fl~rcp~ei~p--~~pei~~l~l~yis 308 (1233)
T KOG1824|consen 268 EDDDELREYCLQALESFLRRCPKEILP--HVPEIINLCLSYIS 308 (1233)
T ss_pred cCcHHHHHHHHHHHHHHHHhChhhhcc--cchHHHHHHHHHhc
Confidence 455668888889999999999998753 34455555555554
No 39
>KOG1059|consensus
Probab=56.98 E-value=2.7e+02 Score=29.58 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=47.5
Q ss_pred Hhh-hhHHHHHHHhc-cchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Q psy12900 41 VNK-GTIFKTCETYQ-QDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT 114 (344)
Q Consensus 41 ~~i-pil~~il~~~~-~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~ 114 (344)
+.+ |-+.++.++.- -|+.|+.++..++=...|..+..+.++.|.+...++++ +-=|+.=.++.-||.
T Consensus 177 eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttS-------sNNWmLIKiiKLF~a 245 (877)
T KOG1059|consen 177 EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTS-------SNNWVLIKLLKLFAA 245 (877)
T ss_pred HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhcc-------CCCeehHHHHHHHhh
Confidence 344 55555555543 46778777777777777777777888888888887763 334677788899998
No 40
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=56.36 E-value=2.1e+02 Score=28.12 Aligned_cols=201 Identities=11% Similarity=0.136 Sum_probs=95.3
Q ss_pred hhHHHHHHHhc-cchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh-cCCC---ccHHHHHHHHHHHhcC---C
Q psy12900 44 GTIFKTCETYQ-QDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYS-KHPH---SSFLYLGSILVDEYAT---S 115 (344)
Q Consensus 44 pil~~il~~~~-~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~-~~~~---~~~L~l~s~lv~~fg~---~ 115 (344)
..+.++++.+. .|.+==+.+..++.+....+...-..+...+...+.+-.. ..++ +-.|.+.+.++.-|.. +
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 45555555543 4556566677778777776654333333444444433222 3333 4456777777777764 2
Q ss_pred cchHHHHHHH-------------HHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCc------------
Q psy12900 116 HCVSGLLDMV-------------QAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS------------ 170 (344)
Q Consensus 116 ~~~~~l~~~~-------------~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s------------ 170 (344)
++...+.+++ ..++..+.+.++ .+|.+++.++ ..++++.|..=-+-
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~------kdp~l~~~~i---~~llk~WP~t~s~Kev~FL~el~~il 283 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE------KDPSLAEPVI---KGLLKHWPKTNSQKEVLFLNELEEIL 283 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH------H-GGGHHHHH---HHHHHHS-SS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH------hCchhHHHHH---HHHHHhCCCCCchhHHHHHHHHHHHH
Confidence 2222222221 222222333332 2355555443 34455566431100
Q ss_pred ---------hhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHH
Q psy12900 171 ---------SFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQA 241 (344)
Q Consensus 171 ---------~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~ 241 (344)
.....+|..-..|+..+|...+..|+.||.+ ..+-.++..+.+.
T Consensus 284 ~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n---------------------------~~~~~li~~~~~~ 336 (409)
T PF01603_consen 284 EVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN---------------------------EYFLSLISQNSRV 336 (409)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS---------------------------HHHHHHHHCTHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC---------------------------HHHHHHHHhChHH
Confidence 1122333333334444444444444444421 1334556666666
Q ss_pred HHHHHHHHch----hccCccchhcHHHHHHHHHHhCHHHHHHH
Q psy12900 242 LVSNLLQACV----FSLHTYMMADVADVLYELISVDRQVSNQW 280 (344)
Q Consensus 242 Lv~~ll~~l~----g~~prs~~~~~a~vL~~L~~~~~~~~~~W 280 (344)
++-.++.++- ++=-+........+|..|....|..+.+-
T Consensus 337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 6666666654 23334444556778888888888776653
No 41
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=55.90 E-value=65 Score=25.12 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhh-hhHHhHHHHHHHHHHHH
Q psy12900 55 QDARVMEHSSRCLRYAIRCVGK-DFAHLLEPLVKQIVVLY 93 (344)
Q Consensus 55 ~d~~vvE~~c~~lr~~~r~~~~-~~~pll~~i~~~l~~~f 93 (344)
...++-+.+++|+...++.++. +..|++++++-.+...+
T Consensus 66 ~~~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 66 EIPELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred CChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 5568888899999999998865 47788888776665543
No 42
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=55.35 E-value=1.1e+02 Score=25.53 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhccCccCCCCcc-hHHHH-Hhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHH
Q psy12900 14 LALSQHFTKHVQHSAVCRCSFL-CPFVC-VNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIV 90 (344)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~p-~~~~~-~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~ 90 (344)
|++..+.++.-.+...+...|| ....+ +.+ |.+-+.+.. .+..+.+++++++...++.++.++..-++.++..+.
T Consensus 43 LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~--~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~ 120 (168)
T PF12783_consen 43 LELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSS--SDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHII 120 (168)
T ss_pred HHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544444333221344 34444 345 666665554 348889999999999998888877776666666665
Q ss_pred HHHh
Q psy12900 91 VLYS 94 (344)
Q Consensus 91 ~~f~ 94 (344)
...-
T Consensus 121 ~~il 124 (168)
T PF12783_consen 121 LRIL 124 (168)
T ss_pred HHHH
Confidence 5443
No 43
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=53.06 E-value=1.9e+02 Score=26.76 Aligned_cols=16 Identities=0% Similarity=-0.095 Sum_probs=8.2
Q ss_pred hHHHHHhh-hhHHHHHH
Q psy12900 36 CPFVCVNK-GTIFKTCE 51 (344)
Q Consensus 36 ~~~~~~~i-pil~~il~ 51 (344)
...+++++ |-+..++.
T Consensus 37 ~~~i~~~l~~~~~~l~~ 53 (322)
T cd07920 37 KELIFDEILPHVVELMV 53 (322)
T ss_pred HHHHHHHHHHhHHHHhc
Confidence 44455555 55555443
No 44
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=50.83 E-value=2e+02 Score=26.35 Aligned_cols=148 Identities=13% Similarity=0.057 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHH
Q psy12900 102 LYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGI 181 (344)
Q Consensus 102 L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al 181 (344)
+.+...+++.|.. .+..+-..+.....+.... +-+|.-+--.|++...+++..| + .+..+.+|+..-
T Consensus 103 ~~ll~~l~~~~~~-----~l~~~~~~fv~~~i~~~~g----EkDPRnLl~~F~l~~~i~~~~~---~-~~~~e~lFd~~~ 169 (262)
T PF14500_consen 103 YQLLDSLLENHRE-----ALQSMGDDFVYGFIQLIDG----EKDPRNLLLSFKLLKVILQEFD---I-SEFAEDLFDVFS 169 (262)
T ss_pred HHHHHHHHHHhHH-----HHHhchhHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHhcc---c-chhHHHHHHHhh
Confidence 3455555555543 3343334444445555544 4677888888888888888877 2 455566666432
Q ss_pred HhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHH---HhhHHHHHHHHHHchhccCccc
Q psy12900 182 LATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVS---KHGQALVSNLLQACVFSLHTYM 258 (344)
Q Consensus 182 ~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~---~~G~~Lv~~ll~~l~g~~prs~ 258 (344)
.-.-+ . +.... ++ | ..-..++++..+++.+. ..++..+-.++.-+..+.+. .
T Consensus 170 cYFPI--------------~-F~pp~-~d-p-------~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~-~ 224 (262)
T PF14500_consen 170 CYFPI--------------T-FRPPP-ND-P-------YGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPS-V 224 (262)
T ss_pred heeee--------------e-eeCCC-CC-C-------CCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcH-H
Confidence 11110 0 00000 11 0 11123567777777764 45777888888888766555 4
Q ss_pred hhcHHHHHHHHHHhCHHH-HHHHHHHHHhh
Q psy12900 259 MADVADVLYELISVDRQV-SNQWLQDTISQ 287 (344)
Q Consensus 259 ~~~~a~vL~~L~~~~~~~-~~~Wl~~~l~~ 287 (344)
-.+.-+.|.++...|+.. +..|+.+.-..
T Consensus 225 K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~ 254 (262)
T PF14500_consen 225 KLDSLQTLKACIENYGADSLSPHWSTIWNA 254 (262)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 445557777777788654 56665555443
No 45
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=50.45 E-value=3.8e+02 Score=29.49 Aligned_cols=136 Identities=13% Similarity=0.166 Sum_probs=69.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHH-HHHHhcCCcchHHHHHHHHHhHHHHH
Q psy12900 55 QDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSI-LVDEYATSHCVSGLLDMVQAFLPPTY 133 (344)
Q Consensus 55 ~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~-lv~~fg~~~~~~~l~~~~~~l~~~~~ 133 (344)
.+.++++.+|+++.+++.+- ...++..-++++.......|+--|-|++.. ++...|+. ++... .+
T Consensus 579 ~~~DIisvI~~ile~~L~~~---~v~ll~scl~fL~aL~p~~p~rVW~~L~rS~LL~~~g~~----G~~s~-------il 644 (931)
T PF10487_consen 579 DHSDIISVIFDILERSLQSR---NVELLTSCLRFLTALLPIFPGRVWSYLSRSSLLGSDGKG----GLASV-------IL 644 (931)
T ss_pred ccCcHHHHHHHHHHHHcccC---ChHHHHHHHHHHHHHhccChHHHHHHHhhCcCcccCCcc----chHHH-------hh
Confidence 34488999999999966542 244566666666666665666666666532 44333331 11111 11
Q ss_pred HhhcCCCCCCCCCchHHHHHHHHHHHHHhCccc--ccCc----hhhHHHHHHHHHhcc----------cCcchhHHHHHH
Q psy12900 134 AILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA--FLTS----SFISSVMQCGILATH----------LDHREANSTVMK 197 (344)
Q Consensus 134 ~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~--ll~s----~~l~~l~~~al~~L~----------~~e~~~~~aa~~ 197 (344)
+ +.+-...+-|.+-.+++|+..+++.+=.. =++. .++..+....+.... .+..+....++.
T Consensus 645 g---s~E~~~G~Y~ftls~lkL~~~Lv~~als~~~~~~~~~~~~vL~~~~~~l~eVfes~~~Wrf~~~~qR~eIg~~i~~ 721 (931)
T PF10487_consen 645 G---SIEMVSGRYDFTLSLLKLFSALVDDALSSNSGVPSKTKSVVLPKIVFHLVEVFESFSTWRFNSPGQRFEIGRSILS 721 (931)
T ss_pred h---hhhccCCcchHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhhcCCceeCCChhhHHHHHHHHHH
Confidence 1 11123344567777777777776654220 0111 122222222221111 122334677888
Q ss_pred HHHHHhhcCC
Q psy12900 198 FFYDLIHNNR 207 (344)
Q Consensus 198 Fl~~li~~~~ 207 (344)
++..++...-
T Consensus 722 ~f~~IL~~~y 731 (931)
T PF10487_consen 722 IFSKILYYVY 731 (931)
T ss_pred HHHHHHHHhc
Confidence 8888887743
No 46
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=49.81 E-value=2.5e+02 Score=27.18 Aligned_cols=79 Identities=8% Similarity=0.132 Sum_probs=42.0
Q ss_pred HHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCC-CCchHHHHHHHHHHHHHhCccc-ccC-chhhHHHHHH-HHHh
Q psy12900 108 LVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKN-HPDTVDDLFRLCTRFLQRAPIA-FLT-SSFISSVMQC-GILA 183 (344)
Q Consensus 108 lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~-~PDvved~f~L~~r~l~~~P~~-ll~-s~~l~~l~~~-al~~ 183 (344)
++..|. ..+.+.+...+..+.+.+.++|.+. +... .-.++...+++++.+.+..... ++. .+.+..+++- .+-.
T Consensus 119 ~~~ly~-~kY~e~f~~~l~~fv~~vw~lL~~~-~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pn 196 (370)
T PF08506_consen 119 NLNLYA-EKYEEEFEPFLPTFVQAVWNLLTKI-SQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIFPN 196 (370)
T ss_dssp HHHHHH-HH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-hhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhccCc
Confidence 344444 3667777778888888888888764 2222 2235666777777655432211 333 3556666653 3334
Q ss_pred cccCc
Q psy12900 184 THLDH 188 (344)
Q Consensus 184 L~~~e 188 (344)
+.+.+
T Consensus 197 l~~~e 201 (370)
T PF08506_consen 197 LCLRE 201 (370)
T ss_dssp HS--H
T ss_pred cCCCH
Confidence 44433
No 47
>TIGR02242 tail_TIGR02242 phage tail protein domain. This model describes a region of sequence similarity shared by a number of uncharacterized proteins in bacterial genomes, including Geobacter sulfurreducens PCA, Mesorhizobium loti, Streptomyces coelicolor A3(2), Gloeobacter violaceus PCC 7421, and Myxococcus xanthus. In all cases, the genomic region resembles a phage tail region, based on tentative identifications of neighboring genes. A region of this domain resembles a region of TIGR01634, another phage tail protein model.
Probab=49.48 E-value=89 Score=25.44 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=48.4
Q ss_pred HHHHHH--HHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhhcHHHHHHHHHHHHHHhc
Q psy12900 264 DVLYEL--ISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRKH 334 (344)
Q Consensus 264 ~vL~~L--~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~r~~~~~v~~F~~~cr~~ 334 (344)
+-+..+ -..+|..+-.||...++. +- ...-++++|...++........|..+..|+++...+-|.
T Consensus 36 d~l~~~~dP~~~P~~~Lp~LA~w~g~-~~-----d~~w~~~~kR~~I~~a~~l~r~rGT~~gLr~~l~~~~G~ 102 (130)
T TIGR02242 36 DALPDYFDPETAPAPFLDFLAQWLGN-PF-----DDELDVPQLRRLVARAADIYRQRGTRLGLRELLRLYLGI 102 (130)
T ss_pred HHHHHhCChhhCCHHHHHHHHHHhCC-CC-----CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 344554 357888999999988773 22 236889999999999887777777777888887777664
No 48
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=47.89 E-value=3.9e+02 Score=29.08 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHhcCCCccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCch
Q psy12900 92 LYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSS 171 (344)
Q Consensus 92 ~f~~~~~~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~ 171 (344)
...-++.++++|...++-+.+++ ..+.+-.++...+.-.+.+. +..||.+....+....+++.+-. ...|
T Consensus 692 iga~~G~~g~~yal~~I~~~~~~----~~l~~~~~~~i~~le~~v~~----~~~~d~i~Gl~g~i~~L~~iYk~--~~ep 761 (963)
T COG4403 692 IGAFTGLSGYFYALWKIYSVTRD----NYLIQSAENSIRHLEILVQK----SKDPDFINGLAGVICVLVSIYKL--TDEP 761 (963)
T ss_pred cccccccchhhhhhHHHHHhccc----HHHHHHHHHHHHHHHHHHhh----ccCcchhhccHHHHHHHHHHHhh--ccch
Confidence 44446778899999998888887 12222222222222222222 45599999988888877766554 3344
Q ss_pred -hhHHHHHHHH
Q psy12900 172 -FISSVMQCGI 181 (344)
Q Consensus 172 -~l~~l~~~al 181 (344)
+++.++.|+-
T Consensus 762 k~l~~ais~~~ 772 (963)
T COG4403 762 KFLELAISLGR 772 (963)
T ss_pred HHHHHHHHHHH
Confidence 3444444443
No 49
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=46.95 E-value=99 Score=27.72 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhc
Q psy12900 148 TVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHN 205 (344)
Q Consensus 148 vved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~ 205 (344)
.-++.-..+.++++..|.+=++. .-+.+.|+-+.|-.-.........++|+...-..
T Consensus 126 s~~e~~~vv~Kv~~~l~~l~l~e-lPpLvyQLL~Lsskg~k~~vL~gl~~~F~~~~~~ 182 (223)
T PF14675_consen 126 SKEELEFVVEKVLSMLKKLDLQE-LPPLVYQLLLLSSKGSKKLVLEGLIKYFNRLDKQ 182 (223)
T ss_dssp -HHHHHHHHHHHHHHHTTS-GGG-HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCChhh-ccHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 34555556667777767732221 1223333333333334455567777788776544
No 50
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=46.04 E-value=3.6e+02 Score=27.94 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=69.8
Q ss_pred HHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhC-cccccCchh------------------hHHHHHHH
Q psy12900 120 GLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRA-PIAFLTSSF------------------ISSVMQCG 180 (344)
Q Consensus 120 ~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~-P~~ll~s~~------------------l~~l~~~a 180 (344)
...++.+++++..-.+... ..++.-|+-|-+.+|+-|++++. |.... ..+ .+.+..+-
T Consensus 568 ~~~elqSN~~~vl~aiir~--~~~~ie~v~D~lm~Lf~r~les~~~t~~~-~dV~~aIsal~~sl~e~Fe~y~~~fiPyl 644 (858)
T COG5215 568 LVEELQSNYIGVLEAIIRT--RRRDIEDVEDQLMELFIRILESTKPTTAF-GDVYTAISALSTSLEERFEQYASKFIPYL 644 (858)
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHhccCCchhh-hHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444444555444444444 33344445555888888888887 44322 111 11222233
Q ss_pred HHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchh-ccCccch
Q psy12900 181 ILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVF-SLHTYMM 259 (344)
Q Consensus 181 l~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g-~~prs~~ 259 (344)
..+|.-.++....++..|+-++.+. +..=+..+.-.++..|.+.+.. ...|..-
T Consensus 645 ~~aln~~d~~v~~~avglvgdlant-------------------------l~~df~~y~d~~ms~LvQ~lss~~~~R~lK 699 (858)
T COG5215 645 TRALNCTDRFVLNSAVGLVGDLANT-------------------------LGTDFNIYADVLMSSLVQCLSSEATHRDLK 699 (858)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHH-------------------------hhhhHHHHHHHHHHHHHHHhcChhhccccc
Confidence 3344445555555555555554433 2222345556667777777765 3455555
Q ss_pred hcHHHHHHHHHHhCHHHHHHHHHHH
Q psy12900 260 ADVADVLYELISVDRQVSNQWLQDT 284 (344)
Q Consensus 260 ~~~a~vL~~L~~~~~~~~~~Wl~~~ 284 (344)
|.+-.++--++..-+..|..+|..+
T Consensus 700 PaiLSvFgDIAlaiga~F~~YL~~i 724 (858)
T COG5215 700 PAILSVFGDIALAIGANFESYLDMI 724 (858)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 5555555555555455555555443
No 51
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=45.69 E-value=1.3e+02 Score=23.59 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=27.9
Q ss_pred ccchHHHHHHHHHHHHHHHHhhh-hhHHhHHHHHHHHHHHH
Q psy12900 54 QQDARVMEHSSRCLRYAIRCVGK-DFAHLLEPLVKQIVVLY 93 (344)
Q Consensus 54 ~~d~~vvE~~c~~lr~~~r~~~~-~~~pll~~i~~~l~~~f 93 (344)
-+.+++-+.+++|+...++.+.. +..|++..++..+...+
T Consensus 65 L~~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 65 LEIPELRSLALRCWHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred hCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 35677888888888888888764 36677777666555543
No 52
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=45.68 E-value=2.5e+02 Score=25.96 Aligned_cols=13 Identities=8% Similarity=-0.018 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHh
Q psy12900 301 PEQLIEFHSQVTR 313 (344)
Q Consensus 301 ~~~k~~F~~~l~~ 313 (344)
+.+|+.+++.++.
T Consensus 250 ~~~~~~ii~~l~~ 262 (322)
T cd07920 250 KEERELIIDEILA 262 (322)
T ss_pred HHHHHHHHHHHhc
Confidence 4555555555554
No 53
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=45.03 E-value=2.8e+02 Score=26.44 Aligned_cols=159 Identities=11% Similarity=0.051 Sum_probs=96.3
Q ss_pred HHHHHhh---hhHHHHHHHhc-cchHHHHHHHHHHHHHHHHh-hhhhHH---hH----HHHHHHHHHHHhcCCCccHHHH
Q psy12900 37 PFVCVNK---GTIFKTCETYQ-QDARVMEHSSRCLRYAIRCV-GKDFAH---LL----EPLVKQIVVLYSKHPHSSFLYL 104 (344)
Q Consensus 37 ~~~~~~i---pil~~il~~~~-~d~~vvE~~c~~lr~~~r~~-~~~~~p---ll----~~i~~~l~~~f~~~~~~~~L~l 104 (344)
..+.+++ .++..++.... -+.+.-..++.++...+|.- +....| ++ |.++..+..+|+.. ...+ .
T Consensus 66 ~qLa~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~--dial-~ 142 (335)
T PF08569_consen 66 AQLAQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP--DIAL-N 142 (335)
T ss_dssp HHHHHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST--TTHH-H
T ss_pred HHHHHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc--cccc-h
Confidence 4555555 56666666543 46777777888888888763 332312 33 67888888888833 2333 3
Q ss_pred HHHHHHHhcCCcchHHHHHHHH-HhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccC--chhhHHHHHHHH
Q psy12900 105 GSILVDEYATSHCVSGLLDMVQ-AFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLT--SSFISSVMQCGI 181 (344)
Q Consensus 105 ~s~lv~~fg~~~~~~~l~~~~~-~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~--s~~l~~l~~~al 181 (344)
.+.++.++-+ +......+++ ......|...+. .+-|+..|-|..+..++.+++.+... ..-....|..-.
T Consensus 143 ~g~mlRec~k--~e~l~~~iL~~~~f~~ff~~~~~-----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~ 215 (335)
T PF08569_consen 143 CGDMLRECIK--HESLAKIILYSECFWKFFKYVQL-----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN 215 (335)
T ss_dssp HHHHHHHHTT--SHHHHHHHHTSGGGGGHHHHTTS-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHh--hHHHHHHHhCcHHHHHHHHHhcC-----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 2223333332 222223444333 45689999999999999999876321 123556666555
Q ss_pred HhcccCcchhHHHHHHHHHHHhhc
Q psy12900 182 LATHLDHREANSTVMKFFYDLIHN 205 (344)
Q Consensus 182 ~~L~~~e~~~~~aa~~Fl~~li~~ 205 (344)
.-|...+.-+-|-++++|.+++.-
T Consensus 216 ~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 216 KLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred HHccCCCeEeehhhHHHHHHHHHc
Confidence 567788888999999999999965
No 54
>KOG0168|consensus
Probab=43.89 E-value=4.6e+02 Score=28.50 Aligned_cols=63 Identities=10% Similarity=0.223 Sum_probs=43.5
Q ss_pred HHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHh-----HHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q psy12900 40 CVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHL-----LEPLVKQIVVLYSKHPHSSFLYLGSILVD 110 (344)
Q Consensus 40 ~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pl-----l~~i~~~l~~~f~~~~~~~~L~l~s~lv~ 110 (344)
+..+ |+|-.++.. .++.+|+-.+||++-+.+..+.....-. +|.+++.|... .|+++++....
T Consensus 209 v~slvp~Lv~LL~~-E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I-------eyiDvAEQ~Lq 277 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSH-EHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI-------EYIDVAEQSLQ 277 (1051)
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh-------hhhHHHHHHHH
Confidence 3456 888887765 5669999999999999999887765533 34455555442 46666655444
No 55
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=41.93 E-value=3.8e+02 Score=27.02 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=62.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcchHHHHHHH--HHhHHHH
Q psy12900 55 QDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMV--QAFLPPT 132 (344)
Q Consensus 55 ~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~~~~~~~l~~~~--~~l~~~~ 132 (344)
.+.+.++.+|+++++++.... ...+++.+.+.+..+.. ++.+..-.++...+....+ +. ....+++ ..+...+
T Consensus 50 ~~~e~v~~~~~iL~~~l~~~~--~~~l~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~-~~-~~~~~~~~~~~l~~~i 124 (503)
T PF10508_consen 50 SNREQVELICDILKRLLSALS--PDSLLPQYQPFLQRGLT-HPSPKVRRLALKQLGRIAR-HS-EGAAQLLVDNELLPLI 124 (503)
T ss_pred cChHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhc-CC-HHHHHHhcCccHHHHH
Confidence 368889999999999998753 33446777777777765 5767766665444444322 11 1223332 2333334
Q ss_pred HHhhcCCCCCCCCCchHHHHHHHHHHHHHhCccc
Q psy12900 133 YAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA 166 (344)
Q Consensus 133 ~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ 166 (344)
...+.. .+.++.+.-..++.++.++.+..
T Consensus 125 ~~~L~~-----~d~~Va~~A~~~L~~l~~~~~~~ 153 (503)
T PF10508_consen 125 IQCLRD-----PDLSVAKAAIKALKKLASHPEGL 153 (503)
T ss_pred HHHHcC-----CcHHHHHHHHHHHHHHhCCchhH
Confidence 444543 44567888888888887665544
No 56
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=40.74 E-value=47 Score=22.48 Aligned_cols=44 Identities=9% Similarity=0.135 Sum_probs=27.7
Q ss_pred HHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhh
Q psy12900 270 ISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESA 317 (344)
Q Consensus 270 ~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~ 317 (344)
...||.+++..-.+..+-+-.. ...++++-|..|+++++-.|+.
T Consensus 6 a~cYp~~~~~Fp~~L~~lL~~~----~~~L~p~lR~~lv~aLiLLRnK 49 (52)
T PF08158_consen 6 AHCYPKETKDFPQELIDLLRNH----HTVLDPDLRMKLVKALILLRNK 49 (52)
T ss_pred ccccHHHHHHHHHHHHHHHHhc----cccCCHHHHHHHHHHHHHHHcc
Confidence 4466766554444433322222 3368999999999999877754
No 57
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=40.52 E-value=4.4e+02 Score=27.35 Aligned_cols=102 Identities=11% Similarity=0.055 Sum_probs=61.0
Q ss_pred ccchhhHHHHHHHHhhhccCccCCCCcchHHHHHhh------------hhHHHHHHH--hccchHHHHHHHHHHHHHHHH
Q psy12900 8 GVSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNK------------GTIFKTCET--YQQDARVMEHSSRCLRYAIRC 73 (344)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i------------pil~~il~~--~~~d~~vvE~~c~~lr~~~r~ 73 (344)
.-.++|..+++..-..|.- .+..+.+++..+ .+.++++.. -....++-...|.++..++|.
T Consensus 512 Ne~n~R~s~fsaLgtli~~-----~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~ 586 (858)
T COG5215 512 NESNLRVSLFSALGTLILI-----CPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRT 586 (858)
T ss_pred cchhHHHHHHHHHHHHHhh-----cchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777666532 222233333332 233333321 112356666789999999999
Q ss_pred hhhhhHHhHHHHHHHHHHHHhcCCC----ccHHHHHHHHHHHhcC
Q psy12900 74 VGKDFAHLLEPLVKQIVVLYSKHPH----SSFLYLGSILVDEYAT 114 (344)
Q Consensus 74 ~~~~~~pll~~i~~~l~~~f~~~~~----~~~L~l~s~lv~~fg~ 114 (344)
.+.+..+.-..+.+.+....+++.. .-.++.+|.+-...|+
T Consensus 587 ~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e 631 (858)
T COG5215 587 RRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEE 631 (858)
T ss_pred cCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHH
Confidence 9988888777788888887777632 2234555666665554
No 58
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=39.41 E-value=2.5e+02 Score=25.30 Aligned_cols=110 Identities=10% Similarity=0.107 Sum_probs=53.4
Q ss_pred hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHH---H----hcCCCccH----H------HHHH
Q psy12900 44 GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVL---Y----SKHPHSSF----L------YLGS 106 (344)
Q Consensus 44 pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~---f----~~~~~~~~----L------~l~s 106 (344)
|++..+....-.-..++..+..+ |+-++..+.+-.+++..++.-+..- . ...+.+.- | .+..
T Consensus 57 ~iy~~~a~~~l~~~~i~~~Ia~v-KWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~ 135 (234)
T PF10474_consen 57 PIYKCVASRLLDLEQILNSIANV-KWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFE 135 (234)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444 4555555555455555554333221 1 22222221 1 2345
Q ss_pred HHHHHhcC-C----cchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHH
Q psy12900 107 ILVDEYAT-S----HCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLC 156 (344)
Q Consensus 107 ~lv~~fg~-~----~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~ 156 (344)
.+|+-|++ . +-++.+.--+..+.... ..+... .+..+++.||+|+.-.
T Consensus 136 ~Lveg~s~vkKCs~eGRalM~lD~q~~~~~l-e~l~~~-~~~p~~~~Ve~YIKAy 188 (234)
T PF10474_consen 136 TLVEGYSRVKKCSNEGRALMQLDFQQLQNKL-EKLSGI-RPIPNREYVENYIKAY 188 (234)
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHHH-HHHcCC-CCCccHHHHHHHHHHH
Confidence 67888888 3 33444444455554433 334443 4455778888876544
No 59
>KOG1488|consensus
Probab=38.84 E-value=1.8e+02 Score=29.45 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=50.0
Q ss_pred HHHHHHHhhhccCccCCCCcchHHHHHhh--hhHHHHHHHhccchHHHH-----HHHHHHHHHHHHhhhh-hHHhHHHHH
Q psy12900 15 ALSQHFTKHVQHSAVCRCSFLCPFVCVNK--GTIFKTCETYQQDARVME-----HSSRCLRYAIRCVGKD-FAHLLEPLV 86 (344)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~i--pil~~il~~~~~d~~vvE-----~~c~~lr~~~r~~~~~-~~pll~~i~ 86 (344)
||..|.++.+.+ ...-|.+.++++.+ ..+.-|+..+.++..+.+ --||++.+++..+..+ ..+++++|.
T Consensus 285 ELd~~vl~~v~D---QngnHViQK~ie~~p~~~~~Fiv~~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~~~~~~i~~ei~ 361 (503)
T KOG1488|consen 285 ELDGHLLKCVKD---QNGNHVIQKCIETLPPDAWQFIVDFFSGDDNLLELSTHKYGCRVIQRILEHCSEDQKQPLMEEII 361 (503)
T ss_pred HHHhhHHHHHhh---cccceehhhhhhccChHHHHHHHHHhcCCCceeEeeccCcccHHHHHHhhcCChHhhhHHHHHHH
Confidence 456666666655 56678899999888 566777787777544433 3689999888877644 666777765
Q ss_pred HHHH
Q psy12900 87 KQIV 90 (344)
Q Consensus 87 ~~l~ 90 (344)
..+-
T Consensus 362 ~~~~ 365 (503)
T KOG1488|consen 362 RNCD 365 (503)
T ss_pred HHHH
Confidence 5443
No 60
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=37.67 E-value=4.4e+02 Score=26.55 Aligned_cols=150 Identities=13% Similarity=0.116 Sum_probs=70.2
Q ss_pred HHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCccccc-CchhhHHHHHHHHHhcccCcchhHHHHHHH
Q psy12900 120 GLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFL-TSSFISSVMQCGILATHLDHREANSTVMKF 198 (344)
Q Consensus 120 ~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll-~s~~l~~l~~~al~~L~~~e~~~~~aa~~F 198 (344)
.+...+..+....+..+.+. +....+ +.-|-++.+....+-.=.++. ..+.+..++..+-...+..-.+.-..+++-
T Consensus 283 ~v~~~~p~~~~~l~~~~~s~-d~~~~~-~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~a 360 (503)
T PF10508_consen 283 EVLELYPAFLERLFSMLESQ-DPTIRE-VAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHA 360 (503)
T ss_pred HHHHHHHHHHHHHHHHhCCC-ChhHHH-HHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 44445555555555555442 222221 333333333332222222212 234556666655555555556677778888
Q ss_pred HHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccC-ccchhcHHHHHHHHHHhCHHHH
Q psy12900 199 FYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLH-TYMMADVADVLYELISVDRQVS 277 (344)
Q Consensus 199 l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~p-rs~~~~~a~vL~~L~~~~~~~~ 277 (344)
+..++....... .+......+.+....|+.=...++..++ .-| .+..-..-.+|.++..+
T Consensus 361 l~~il~~~~~~~-------------~~~i~~~~~~w~~~~~~~~~~~~l~~~~-~qPF~elr~a~~~~l~~l~~~----- 421 (503)
T PF10508_consen 361 LASILTSGTDRQ-------------DNDILSITESWYESLSGSPLSNLLMSLL-KQPFPELRCAAYRLLQALAAQ----- 421 (503)
T ss_pred HHHHHhcCCCCc-------------hHHHHHHHHHHHHHhcCCchHHHHHHHh-cCCchHHHHHHHHHHHHHhcC-----
Confidence 888876543321 1122233444554444433332444444 344 22222344555555543
Q ss_pred HHHHHHHHhhCCCC
Q psy12900 278 NQWLQDTISQLPKN 291 (344)
Q Consensus 278 ~~Wl~~~l~~lp~~ 291 (344)
.|-...+.+-|++
T Consensus 422 -~Wg~~~i~~~~gf 434 (503)
T PF10508_consen 422 -PWGQREICSSPGF 434 (503)
T ss_pred -HHHHHHHHhCccH
Confidence 4777666655444
No 61
>KOG2611|consensus
Probab=36.35 E-value=4.7e+02 Score=26.50 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=51.1
Q ss_pred HHHhhhhHHHHHHHhc-----cchHHHHHHHHHHHHHHHHhhhhhHHhHHH-HHHHHHHHHhcCCCcc--HHHHHHHHHH
Q psy12900 39 VCVNKGTIFKTCETYQ-----QDARVMEHSSRCLRYAIRCVGKDFAHLLEP-LVKQIVVLYSKHPHSS--FLYLGSILVD 110 (344)
Q Consensus 39 ~~~~ipil~~il~~~~-----~d~~vvE~~c~~lr~~~r~~~~~~~pll~~-i~~~l~~~f~~~~~~~--~L~l~s~lv~ 110 (344)
++.+||++.+++++-. .+-.++|.+..|++..-..- .+...++.. -+..+.+.|..+..+. -|-+.--++.
T Consensus 102 ~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~ 180 (698)
T KOG2611|consen 102 MVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLL 180 (698)
T ss_pred HHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 3444588888887732 22337888999988665542 222233332 4566677887655443 3333334455
Q ss_pred HhcC---CcchHHHHHHHHHhH
Q psy12900 111 EYAT---SHCVSGLLDMVQAFL 129 (344)
Q Consensus 111 ~fg~---~~~~~~l~~~~~~l~ 129 (344)
.++- ++..+.+..++..++
T Consensus 181 ~~~~~cw~e~~~~flali~~va 202 (698)
T KOG2611|consen 181 VSKLDCWSETIERFLALIAAVA 202 (698)
T ss_pred HHhcccCcCCHHHHHHHHHHHH
Confidence 5655 555556666555544
No 62
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=36.16 E-value=1.6e+02 Score=26.06 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=41.9
Q ss_pred CCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHH----------HH-hcccCcchhHHHHHHHHHHHhhc
Q psy12900 145 HPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCG----------IL-ATHLDHREANSTVMKFFYDLIHN 205 (344)
Q Consensus 145 ~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~a----------l~-~L~~~e~~~~~aa~~Fl~~li~~ 205 (344)
.+.-+.+.-+++-+|++.-|.-+++......+.+++ +. .|--.++...+..+.||..+...
T Consensus 100 ~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~~~~~~~~~~ll~~~LP~~n~~~l~~L~~fL~~v~~~ 171 (220)
T cd04380 100 SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAVANNEEDKRQVIRISLPPVHRNVFVYLCSFLRELLSE 171 (220)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHhcCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 455677888889999999999999987777766653 33 33344555555556666666554
No 63
>PF14361 RsbRD_N: RsbT co-antagonist protein rsbRD N-terminal domain
Probab=35.41 E-value=2e+02 Score=22.02 Aligned_cols=55 Identities=22% Similarity=0.417 Sum_probs=37.6
Q ss_pred HhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhch-------------hhcHHHHHHHHHHH
Q psy12900 271 SVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSE-------------SAYDVGQALKELSR 329 (344)
Q Consensus 271 ~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~-------------~~r~~~~~v~~F~~ 329 (344)
.+-......|+..++..-|.. +..++..+.++|.+-+..+- ....+++.+.++++
T Consensus 8 ~~~~~Il~~W~~~~~~~~~~~----~~~~~~~el~~~~~~v~~~l~~~l~~~~d~~~~~~~~l~~~L~~lsr 75 (105)
T PF14361_consen 8 EHREAILDRWLEAVLASYPSR----TDRFSEKELRQFANPVLDALAAALESGLDLAAPEWEELREALEELSR 75 (105)
T ss_pred HhHHHHHHHHHHHHHHhcccc----cccccHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence 344455899999998877665 44677888888888776542 12456777766654
No 64
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=35.39 E-value=4.6e+02 Score=26.09 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=44.6
Q ss_pred CCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHH-HhcccCcchhHHHHHHHHHHHhhcC
Q psy12900 145 HPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGI-LATHLDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 145 ~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al-~~L~~~e~~~~~aa~~Fl~~li~~~ 206 (344)
......++|.|+..+++++... +..+.+..+++... .|..-...+-++++++++..++..+
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~-l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~ 208 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNY-LDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYG 208 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcC
Confidence 5567899999999999999886 44445555554322 2444555566799999999999986
No 65
>KOG3821|consensus
Probab=35.00 E-value=4.6e+02 Score=26.77 Aligned_cols=99 Identities=14% Similarity=0.259 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhHHHHH----HHHHHHHhcCCCccHHHHHHHHHHHhc--------C-CcchHHHHH
Q psy12900 57 ARVMEHSSRCLRYAIRCVGKDFAHLLEPLV----KQIVVLYSKHPHSSFLYLGSILVDEYA--------T-SHCVSGLLD 123 (344)
Q Consensus 57 ~~vvE~~c~~lr~~~r~~~~~~~pll~~i~----~~l~~~f~~~~~~~~L~l~s~lv~~fg--------~-~~~~~~l~~ 123 (344)
..+.+..+..+|+.+.+--..|..++..++ ..+...|..+.-.-|..-+..+=+-|- . .+..+.+.+
T Consensus 86 eqllq~~s~~Lr~~l~s~~r~F~E~f~ell~~ae~~l~~mF~~tYg~ly~qn~~~~~dlFtel~~y~~~~~~nlee~l~e 165 (563)
T KOG3821|consen 86 EQLLQDSSSVLRFVLASNARKFDEFFLELLRNAENSLNAMFSKTYGSLYPQNAELFNDLFTELKLYYVGSNVNLEETLNE 165 (563)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 455677788888877664444444444443 445566665554444433333222221 1 445566777
Q ss_pred HHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHH
Q psy12900 124 MVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQ 161 (344)
Q Consensus 124 ~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~ 161 (344)
.+.+|...+|.++.. -+|..+||...+.++-+
T Consensus 166 ff~~Lf~~~f~~l~~------~~~~~~Dy~eCl~~~~~ 197 (563)
T KOG3821|consen 166 FFARLFEVMFSQLNP------QYDFTLDYLECLSKARR 197 (563)
T ss_pred HHHHHHHHHHHHhcC------CcCCcHHHHHHHHHHHH
Confidence 777888888887764 36777888877777655
No 66
>KOG2122|consensus
Probab=34.70 E-value=8.1e+02 Score=28.73 Aligned_cols=64 Identities=8% Similarity=-0.075 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHhhh--ccCccCC-CCcchHHHHHhh-hhHHHHHHHhc----------cchHHHHHHHHHHHHHHH
Q psy12900 9 VSRAELALSQHFTKHV--QHSAVCR-CSFLCPFVCVNK-GTIFKTCETYQ----------QDARVMEHSSRCLRYAIR 72 (344)
Q Consensus 9 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~p~~~~~~~i-pil~~il~~~~----------~d~~vvE~~c~~lr~~~r 72 (344)
-+.|+-+..+..+-+| +|+.... ..--++.++++| ...+..-+-+. ....++.++|-++|-.|-
T Consensus 251 ~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD 328 (2195)
T KOG2122|consen 251 DKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD 328 (2195)
T ss_pred hHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc
Confidence 3566777888888887 3433222 233466666666 66555433222 125677889988764443
No 67
>KOG1061|consensus
Probab=33.84 E-value=88 Score=32.93 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=56.7
Q ss_pred hhHHHHHHHhccc-hHHHHHHHHHHHH--------HHH-Hhhhh--hHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Q psy12900 44 GTIFKTCETYQQD-ARVMEHSSRCLRY--------AIR-CVGKD--FAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDE 111 (344)
Q Consensus 44 pil~~il~~~~~d-~~vvE~~c~~lr~--------~~r-~~~~~--~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~ 111 (344)
-++..++++|++. ..++-..|..+.. ++- -+|.+ --|-.+.+++.+...|.....--=+.+....|..
T Consensus 408 vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~ 487 (734)
T KOG1061|consen 408 VVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKL 487 (734)
T ss_pred HHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 5677777777766 4445555555331 111 12222 2234455666666666655544456667777777
Q ss_pred hcC-C-cchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCccc
Q psy12900 112 YAT-S-HCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA 166 (344)
Q Consensus 112 fg~-~-~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ 166 (344)
|++ + +++ +++ +.++..-. .=.++||+.+.-+ +..|++...|.+
T Consensus 488 Fl~~p~~tq----~~l----~~vL~~~~---~d~~~~dlrDr~l-~Y~RlLs~~~~~ 532 (734)
T KOG1061|consen 488 FLKKPTETQ----ELL----QGVLPLAT---ADTDNPDLRDRGL-IYWRLLSEDPLI 532 (734)
T ss_pred HhcCCccHH----HHH----HHHHhhhh---ccccChhhhhhHH-HHHHHhhcCHHH
Confidence 777 3 332 222 22332222 2257888777543 234454444443
No 68
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=33.30 E-value=89 Score=22.86 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhchhhcHHHHHHHHH
Q psy12900 299 ATPEQLIEFHSQVTRSESAYDVGQALKEL 327 (344)
Q Consensus 299 vt~~~k~~F~~~l~~~~~~r~~~~~v~~F 327 (344)
+|+++|+.|...+.....+|.+-+.++..
T Consensus 16 Ls~~Er~~f~h~Ln~Y~~~RnV~~Lv~sL 44 (78)
T cd07356 16 LSEAEREEFIHCLNDYHAKRNVYDLVQSL 44 (78)
T ss_pred ccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 67999999999999888777776666554
No 69
>KOG2200|consensus
Probab=32.53 E-value=1.1e+02 Score=31.35 Aligned_cols=57 Identities=28% Similarity=0.484 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCcccccCchh---hH------------HHHHHHHHhcccCcchhHHHHHHHHHHHhhcC
Q psy12900 150 DDLFRLCTRFLQRAPIAFLTSSF---IS------------SVMQCGILATHLDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 150 ed~f~L~~r~l~~~P~~ll~s~~---l~------------~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~ 206 (344)
.|--+|+-+|+|.-|.-+++... |. ..+++++..|--.+|++.++-+.||.+++...
T Consensus 371 ~DvAdlLKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~aillLPDeNReaLktLL~FL~~V~an~ 442 (674)
T KOG2200|consen 371 HDVADLLKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAILLLPDENREALKTLLEFLNDVIANE 442 (674)
T ss_pred hHHHHHHHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHhH
Confidence 34556788889999999887632 22 34566777777899999999999999999853
No 70
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=31.47 E-value=4.3e+02 Score=26.69 Aligned_cols=15 Identities=47% Similarity=0.687 Sum_probs=12.8
Q ss_pred CCCCchHHHHHHHHH
Q psy12900 143 KNHPDTVDDLFRLCT 157 (344)
Q Consensus 143 ~~~PDvved~f~L~~ 157 (344)
-+++++|+-+|.+..
T Consensus 268 ~ed~~~V~~L~~Ly~ 282 (501)
T PF13001_consen 268 LEDPDLVDRLFDLYL 282 (501)
T ss_pred CCCHHHHHHHHHHHH
Confidence 488899999998887
No 71
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=31.45 E-value=2.4e+02 Score=21.56 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=38.6
Q ss_pred hhHHHHHHHhc-cchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHh
Q psy12900 44 GTIFKTCETYQ-QDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYS 94 (344)
Q Consensus 44 pil~~il~~~~-~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~ 94 (344)
.++..++.-+. .|.+|=..+|+.+-...+..+..+.+..++|++.+.....
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444 5788988999999999999998888888888887766543
No 72
>KOG4199|consensus
Probab=28.94 E-value=3.7e+02 Score=25.99 Aligned_cols=94 Identities=10% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHhh--hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHH-HHHHHHHHHhcCCCccHH-HHHHHHHHHhcC
Q psy12900 39 VCVNK--GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEP-LVKQIVVLYSKHPHSSFL-YLGSILVDEYAT 114 (344)
Q Consensus 39 ~~~~i--pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~-i~~~l~~~f~~~~~~~~L-~l~s~lv~~fg~ 114 (344)
++++- |.+..++.+|..|+.|++.+|.++...--....++.-++.. ..+..++..+.+|...-. .=++.+|...-.
T Consensus 324 IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 324 IVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Q ss_pred ---CcchHHHHHHHHHhHHHH
Q psy12900 115 ---SHCVSGLLDMVQAFLPPT 132 (344)
Q Consensus 115 ---~~~~~~l~~~~~~l~~~~ 132 (344)
+.+...+..=++.+....
T Consensus 404 rs~~~~~~~l~~GiE~Li~~A 424 (461)
T KOG4199|consen 404 RSAENRTILLANGIEKLIRTA 424 (461)
T ss_pred hhhhccchHHhccHHHHHHHH
No 73
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=28.50 E-value=5.9e+02 Score=25.24 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=47.7
Q ss_pred hhcHHHHHHHHHHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhh--cHHHHHHHHHH-HHHHhc-
Q psy12900 259 MADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESA--YDVGQALKELS-RLYRKH- 334 (344)
Q Consensus 259 ~~~~a~vL~~L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~--r~~~~~v~~F~-~~cr~~- 334 (344)
+..+--+|..+.+.. ...+.|++..+ +|.. -...-.+++.+.+-.+++|..++ -.+|+.+.+|- .+|.+-
T Consensus 267 l~PlL~lL~~~~~~~-~~~Rk~lr~~l--LP~~---~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 267 LTPLLTLLTRLARAA-REVRKYLRARL--LPPD---KDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HhhHHHHHHHHHHhc-HHHHHHHHHHh--CCCh---hhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 334444444444444 46888988776 4554 23344455666777777766543 57999999986 677652
Q ss_pred ----cCcccccc
Q psy12900 335 ----MKYNYSYH 342 (344)
Q Consensus 335 ----~~~~y~~~ 342 (344)
..++||++
T Consensus 341 ~~~v~~~GyG~A 352 (446)
T PF10165_consen 341 SRFVKYVGYGNA 352 (446)
T ss_pred HHHHHHcCchhH
Confidence 44566654
No 74
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=28.17 E-value=77 Score=30.56 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=25.6
Q ss_pred HHHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHh
Q psy12900 269 LISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTR 313 (344)
Q Consensus 269 L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~ 313 (344)
..+...++|++||.+++ ||+. +...-++-|...=+.
T Consensus 26 vaksq~nqfrqwlltav--lpns-------ind~r~e~faslelt 61 (510)
T PF04747_consen 26 VAKSQRNQFRQWLLTAV--LPNS-------INDKRKEAFASLELT 61 (510)
T ss_pred HHHHHHHHHHHHHHHHh--cccc-------ccHHHHHHhhhhhhc
Confidence 45677789999999887 6774 666666777554443
No 75
>KOG2956|consensus
Probab=27.83 E-value=1.6e+02 Score=29.37 Aligned_cols=68 Identities=10% Similarity=0.136 Sum_probs=48.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhhh-hHHhHHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHhcCCcchHHHH
Q psy12900 55 QDARVMEHSSRCLRYAIRCVGKD-FAHLLEPLVKQIVVLYSKHPHS---SFLYLGSILVDEYATSHCVSGLL 122 (344)
Q Consensus 55 ~d~~vvE~~c~~lr~~~r~~~~~-~~pll~~i~~~l~~~f~~~~~~---~~L~l~s~lv~~fg~~~~~~~l~ 122 (344)
.|...--++-+++.+.+..+..+ ..++++.++..++++|..+... +..|+.-.++...|-++..+.+.
T Consensus 418 ~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~ 489 (516)
T KOG2956|consen 418 ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLE 489 (516)
T ss_pred CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhh
Confidence 66666667777888888877654 6778899999999999876553 46777777888888423334433
No 76
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=27.38 E-value=8.1e+02 Score=26.42 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhc----hhhcHHHHHHHHHHHHHHh
Q psy12900 301 PEQLIEFHSQVTRS----ESAYDVGQALKELSRLYRK 333 (344)
Q Consensus 301 ~~~k~~F~~~l~~~----~~~r~~~~~v~~F~~~cr~ 333 (344)
.....++++.++.. +..+++.+.|..|+...+.
T Consensus 730 ~~l~~~~i~~~~~~l~~s~~g~~i~~~le~~~~~s~~ 766 (777)
T COG5099 730 RSLLARAIKKVIPSLKKSMYGQHILALLEKVGSSSQS 766 (777)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHhccccc
Confidence 33444555554443 3347888999999888776
No 77
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=26.45 E-value=2.4e+02 Score=29.02 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=31.6
Q ss_pred HHHHhh-hhHH----------HHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHH
Q psy12900 38 FVCVNK-GTIF----------KTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLY 93 (344)
Q Consensus 38 ~~~~~i-pil~----------~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f 93 (344)
.+.++| |+++ ..+++-+.-+.++|++.+-+-..+-++ +.|++-|++.++....
T Consensus 373 ~v~~qI~PiLefrD~i~k~I~~~IekIPgL~~l~e~i~e~l~~fVfs~---laPfi~Pii~q~~~~L 436 (606)
T PF07217_consen 373 EVHQQIYPILEFRDRIMKSISEAIEKIPGLESLIEKISEQLTVFVFSL---LAPFIRPIIKQVSSEL 436 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 666777 7654 344555566666777666665444443 5577767666665544
No 78
>KOG3723|consensus
Probab=26.41 E-value=7.4e+02 Score=25.67 Aligned_cols=211 Identities=13% Similarity=0.191 Sum_probs=102.0
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhc-----------CCCccH-HHHHHHHHHHhcC-CcchHH
Q psy12900 54 QQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSK-----------HPHSSF-LYLGSILVDEYAT-SHCVSG 120 (344)
Q Consensus 54 ~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~-----------~~~~~~-L~l~s~lv~~fg~-~~~~~~ 120 (344)
..|-.|+|-+..-+-.++|+-+. ...+...+++.|-++... +||+-. -+++|.+...|.+ +...-.
T Consensus 52 nnDQSVVEIcVtRit~aIRET~s-iE~YaAaLVDlLd~cL~hnl~p~g~kded~PHaKIAsDi~SSiFLny~K~~~m~~a 130 (851)
T KOG3723|consen 52 NNDQSVVEICVTRITTAIRETES-IEKYAAALVDLLDSCLEHNLRPFGKKDEDTPHAKIASDIMSSIFLNYNKPPVMALA 130 (851)
T ss_pred CCcchhhhhHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHhccCccCCCCCCCCchhhHHHHHHHHHHHhcCCCCceeee
Confidence 35677788777767777777543 334445555554444322 333322 2556666666655 321111
Q ss_pred HH-----------HHHHHhHHHH-HHhhcCCCCCCCCCchHHH--------HHHHHHHHHHhCcccccCc-hhhHHHHHH
Q psy12900 121 LL-----------DMVQAFLPPT-YAILQEEDGLKNHPDTVDD--------LFRLCTRFLQRAPIAFLTS-SFISSVMQC 179 (344)
Q Consensus 121 l~-----------~~~~~l~~~~-~~~l~~~~~~~~~PDvved--------~f~L~~r~l~~~P~~ll~s-~~l~~l~~~ 179 (344)
+. ++...+.+.. ++..+.-+-+.+|.+++-. ++++.+......|..+.+- |.+..++
T Consensus 131 ~p~av~fL~rgn~el~rn~~~ylslaai~~adLL~~hTEv~~~siLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL-- 208 (851)
T KOG3723|consen 131 IPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILSGNTMLLRVLSAVYEKQPQPINPHLPELLALL-- 208 (851)
T ss_pred hhhHHHHHhccChhhcccchhhhhHHHHhhhhhccCchHHHHHHHhccchHHHHHHHHHHhcCCCccCcccHHHHHHh--
Confidence 11 1111111111 1111111123344444332 7778888889999987654 4443322
Q ss_pred HHHhcccCcchh-HHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHH-HHHHHHHHhhHHHHHHHHHHchhccCcc
Q psy12900 180 GILATHLDHREA-NSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHR-LMKDIVSKHGQALVSNLLQACVFSLHTY 257 (344)
Q Consensus 180 al~~L~~~e~~~-~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~l~~~G~~Lv~~ll~~l~g~~prs 257 (344)
...++ -+.++..+-.||.+.... -.+..-. ..-.+....--.++-+++.-++ ...+.
T Consensus 209 -------~q~~p~~~~ll~~l~~LI~Qk~~e-------------vL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia-~~~pv 267 (851)
T KOG3723|consen 209 -------SQLEPEQYHLLRLLHVLIKQKQLE-------------VLQKCIPFLIGHLKDSTHNDIILNILKEIA-VYEPV 267 (851)
T ss_pred -------cCCCHHHHHHHHHHHHHHHhccHH-------------HHHHHHHHHHHHhccccchhHHHHHHHHHH-hcCcc
Confidence 22332 344555666666653211 0000000 0111111112234444555554 45667
Q ss_pred chhcHHHHHHHHHHhCHHH--HHHHHHHHHhhC
Q psy12900 258 MMADVADVLYELISVDRQV--SNQWLQDTISQL 288 (344)
Q Consensus 258 ~~~~~a~vL~~L~~~~~~~--~~~Wl~~~l~~l 288 (344)
.++...|.|..+...+|.. ..+-+.+++...
T Consensus 268 ~l~~~~E~l~e~~~~~p~~~~~~a~i~T~~g~~ 300 (851)
T KOG3723|consen 268 ALNSFLEMLKEIGERFPYLTGQMARIYTAVGHV 300 (851)
T ss_pred chhhHHHHHHHHHHhCCCccHHHHHHHHHhccc
Confidence 7777888888888888754 355566666544
No 79
>KOG0310|consensus
Probab=26.05 E-value=3.4e+02 Score=27.13 Aligned_cols=53 Identities=25% Similarity=0.245 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHhcC-CcchHHHHHHHHHhHHHHH
Q psy12900 81 LLEPLVKQIVVLYSKHPHSSFL-YLGSILVDEYAT-SHCVSGLLDMVQAFLPPTY 133 (344)
Q Consensus 81 ll~~i~~~l~~~f~~~~~~~~L-~l~s~lv~~fg~-~~~~~~l~~~~~~l~~~~~ 133 (344)
-+.+++.+|...+...++++.| .+++++++.|+. .+..+.+...++.|...+-
T Consensus 407 eL~~lLnfl~~~l~~~rf~~~L~~~~~~iLd~Y~~~i~~s~~l~k~i~~L~~~V~ 461 (487)
T KOG0310|consen 407 ELAPLLNFLVKNLTVVRFASILMEVVSVILDLYARDIEGSPMLAKLIQALRGKVE 461 (487)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHH
Confidence 4666777778888877777665 778999999998 6667777877777765543
No 80
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=25.93 E-value=5.1e+02 Score=26.04 Aligned_cols=124 Identities=19% Similarity=0.292 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHH
Q psy12900 192 NSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELIS 271 (344)
Q Consensus 192 ~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~ 271 (344)
+.+.++||..+|+..... ....+.+++.. +.|+..|+.-+....+...-..++++|-+++.
T Consensus 32 ~~~ImDlLLklIs~d~~~-----------------~~~~ilewL~~--q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 32 TPAIMDLLLKLISTDKPE-----------------SPTGILEWLAE--QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred CcHHHHHHHHHHccCccc-----------------chHHHHHHHHH--hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 346788999999854311 12345566655 77888888888766666667789999999998
Q ss_pred hCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhhcHHHHHHHHHHHHHHhccCcccc
Q psy12900 272 VDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRKHMKYNYS 340 (344)
Q Consensus 272 ~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~r~~~~~v~~F~~~cr~~~~~~y~ 340 (344)
.+.+... +...... |+ ++-...++++--+++++.++...+...+...+.=+..+.|+. ++.|.
T Consensus 93 is~n~~~-~~~~~ig--pn--~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn-nsdy~ 155 (475)
T PF04499_consen 93 ISRNAPQ-NEQSSIG--PN--PLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN-NSDYD 155 (475)
T ss_pred Hhhcccc-ccccCCC--cc--HHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc-ccccc
Confidence 7764321 1111110 11 001113567777778877775333445555565555555443 55554
No 81
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=25.41 E-value=1e+02 Score=21.95 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=21.6
Q ss_pred Hhh-hhHHHHHHHhccchHHHHH-HHHHH
Q psy12900 41 VNK-GTIFKTCETYQQDARVMEH-SSRCL 67 (344)
Q Consensus 41 ~~i-pil~~il~~~~~d~~vvE~-~c~~l 67 (344)
.++ |++.+++..|+.+.+.+|. ..+++
T Consensus 26 ~~v~~vl~~LL~lY~~nW~lIEed~Y~~L 54 (65)
T PF10440_consen 26 KQVRPVLKNLLKLYDGNWELIEEDNYRVL 54 (65)
T ss_pred HHHHHHHHHHHHHHcCCchhhhcccHHHH
Confidence 457 9999999999999999985 44433
No 82
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=24.76 E-value=2.3e+02 Score=23.19 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHhCcccccCchhhHHHHHHH---------------HHhcccCcchhHHHHHHHHHHHhhcC
Q psy12900 148 TVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCG---------------ILATHLDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 148 vved~f~L~~r~l~~~P~~ll~s~~l~~l~~~a---------------l~~L~~~e~~~~~aa~~Fl~~li~~~ 206 (344)
-+.+..+++-++++..|.-+++....+.++.+. +..|.-.++......+.|+..+....
T Consensus 51 ~~~~va~~lK~~l~~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~ 124 (169)
T cd00159 51 DVHDVASLLKLYLRELPEPLIPFELYDEFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNS 124 (169)
T ss_pred CHHHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhc
Confidence 477778888899999999888876555555442 22333445555666666666666654
No 83
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=24.35 E-value=2e+02 Score=24.16 Aligned_cols=82 Identities=18% Similarity=0.185 Sum_probs=47.1
Q ss_pred HhhHHHHHHHHHHchhccCccchhcHHHHHHHHHHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchh
Q psy12900 237 KHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSES 316 (344)
Q Consensus 237 ~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~ 316 (344)
..+-.+.+.+|+--+.....+..+.=-+-+..|.+ -..-|+.+|+.+|+. -.+|..|++.|-.-.+
T Consensus 62 ~~~vnl~es~LR~~~~~~~~~~~~~~~~~~~el~~-----~A~~LK~iLSrIPde---------i~dR~~FL~tIK~IAs 127 (154)
T PF06840_consen 62 KLNVNLTESLLRMAGSAPQEYRLSRREPEFQELNK-----RATALKRILSRIPDE---------ISDRRTFLETIKEIAS 127 (154)
T ss_dssp HHHHHHHHHHHHHTTGGTTTTS-SS-SHHHHHHHH-----HHHHHHHHHHTHHHH---------TTSHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHhccccccchhcCCCcHHHHHHHH-----HHHHHHHHHhcCcHh---------hcchHHHHHHHHHHHH
Confidence 44556777777544433322222222233333333 244567788888876 3459999999876554
Q ss_pred h-cHHHHHHHHHHHHHH
Q psy12900 317 A-YDVGQALKELSRLYR 332 (344)
Q Consensus 317 ~-r~~~~~v~~F~~~cr 332 (344)
. |++-++|-+....+.
T Consensus 128 aIK~lLdAvn~v~~~~~ 144 (154)
T PF06840_consen 128 AIKKLLDAVNEVFKNIP 144 (154)
T ss_dssp HHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 4 777777776665444
No 84
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=24.18 E-value=3.8e+02 Score=23.26 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=28.1
Q ss_pred hccchHHHHHHHHHHHHHHHH---hhhhhHHhHHHHHHHHH
Q psy12900 53 YQQDARVMEHSSRCLRYAIRC---VGKDFAHLLEPLVKQIV 90 (344)
Q Consensus 53 ~~~d~~vvE~~c~~lr~~~r~---~~~~~~pll~~i~~~l~ 90 (344)
...|.+|++++.++++..+++ .|..+.|+..+++..+.
T Consensus 90 ~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 90 NTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred hCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 357899999999999999665 45566666666655444
No 85
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=23.09 E-value=3.8e+02 Score=21.13 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHchhccC---ccchhcHHHHHHHHHH
Q psy12900 226 MRHRLMKDIVSKHGQALVSNLLQACVFSLH---TYMMADVADVLYELIS 271 (344)
Q Consensus 226 ~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~p---rs~~~~~a~vL~~L~~ 271 (344)
..+..+++.+..+.+.++..+.+.+..... .......-+++.++..
T Consensus 67 ~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~ 115 (148)
T PF08389_consen 67 ERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS 115 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 445667777877777777777776664433 2333334344444444
No 86
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.82 E-value=6.5e+02 Score=23.72 Aligned_cols=100 Identities=13% Similarity=0.171 Sum_probs=54.7
Q ss_pred CchHHHHHHHHHHHHHhCcccccCc---------hhhHHHHHHHHHhcccCcc-----hhHH-HHHHHHHHHhhcCCCCC
Q psy12900 146 PDTVDDLFRLCTRFLQRAPIAFLTS---------SFISSVMQCGILATHLDHR-----EANS-TVMKFFYDLIHNNRVLS 210 (344)
Q Consensus 146 PDvved~f~L~~r~l~~~P~~ll~s---------~~l~~l~~~al~~L~~~e~-----~~~~-aa~~Fl~~li~~~~~~~ 210 (344)
++++...++|+..++.+....+... +.++.++.--.....-... ..+| ..++||..++..+ ++
T Consensus 70 ~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~--~~ 147 (330)
T PF11707_consen 70 PSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSG--DP 147 (330)
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccC--CH
Confidence 7788899999999988655433211 1222222111100000000 1344 4688999999876 21
Q ss_pred cccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHH
Q psy12900 211 DKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYE 268 (344)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~ 268 (344)
....+++.+++- +..+++++.. =|.+.+..+-++|..
T Consensus 148 ------------------~~~~~lL~~~~~--~~~l~k~l~~-D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 148 ------------------ELKRDLLSQKKL--MSALFKGLRK-DPPETVILILETLKD 184 (330)
T ss_pred ------------------HHHHHHHHcCch--HHHHHhcccC-CCHHHHHHHHHHHHH
Confidence 356778877665 8888888774 333334444444443
No 87
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=22.71 E-value=4.7e+02 Score=22.04 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=32.1
Q ss_pred CchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcC
Q psy12900 146 PDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 146 PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~ 206 (344)
|.+=....-.++.+..++|..+ .|..+.++ .+|.-++...=+.|+.-++.|+..+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~----~~L~D~~~~VR~~al~~Ls~Li~~d 56 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV--EPYLPNLY----KCLRDEDPLVRKTALLVLSHLILED 56 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH--HhHHHHHH----HHHCCCCHHHHHHHHHHHHHHHHcC
Confidence 3333344445556666667653 22233333 3566666666778888888888764
No 88
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=22.40 E-value=4.3e+02 Score=23.41 Aligned_cols=59 Identities=22% Similarity=0.426 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCcccccCchhhHHHHH---------------HHHHhcccCcchhHHHHHHHHHHHhhcCC
Q psy12900 149 VDDLFRLCTRFLQRAPIAFLTSSFISSVMQ---------------CGILATHLDHREANSTVMKFFYDLIHNNR 207 (344)
Q Consensus 149 ved~f~L~~r~l~~~P~~ll~s~~l~~l~~---------------~al~~L~~~e~~~~~aa~~Fl~~li~~~~ 207 (344)
+.+.-+++-+|+|.-|.-+++....+.++. ..+.-|--.++...+..+.||..+.....
T Consensus 72 ~~~va~lLK~flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~ 145 (220)
T cd04375 72 AYDVADMLKQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQ 145 (220)
T ss_pred HHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 345667777778888887776643332222 22333334566667777777777776654
No 89
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [].
Probab=22.28 E-value=4.8e+02 Score=21.98 Aligned_cols=56 Identities=20% Similarity=0.372 Sum_probs=42.2
Q ss_pred HHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchh---hHHHHHHHHHhcc
Q psy12900 126 QAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSF---ISSVMQCGILATH 185 (344)
Q Consensus 126 ~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~---l~~l~~~al~~L~ 185 (344)
..++..++.+++.. ++. .| +||+=+++...++.+-....++-+ +..++.-++..|.
T Consensus 10 ~~~~~~vl~lF~g~-~l~-~~--iEdlN~lv~~~i~~~~~~~~~~~~~~dl~elL~tg~~~L~ 68 (158)
T PF08539_consen 10 NSLCAKVLPLFQGE-RLR-LP--IEDLNELVRFHIKLCIQSFPPSYFLEDLEELLTTGMYILE 68 (158)
T ss_pred HHHHHHHHHHHcCC-CCC-cC--HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 45677788999886 776 77 999999999999999888755543 4566666666553
No 90
>KOG1060|consensus
Probab=22.26 E-value=1e+03 Score=25.79 Aligned_cols=32 Identities=3% Similarity=-0.034 Sum_probs=23.6
Q ss_pred hHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHH
Q psy12900 36 CPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRC 73 (344)
Q Consensus 36 ~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~ 73 (344)
...+++.+ |++ |..+..||=++|+++.+..-.
T Consensus 285 ~~lLL~stkpLl------~S~n~sVVmA~aql~y~lAP~ 317 (968)
T KOG1060|consen 285 LKLLLQSTKPLL------QSRNPSVVMAVAQLFYHLAPK 317 (968)
T ss_pred HHHHHHhccHHH------hcCCcHHHHHHHhHHHhhCCH
Confidence 34445666 765 678899999999999876544
No 91
>PF05233 PHB_acc: PHB accumulation regulatory domain; InterPro: IPR007897 The proteins this domain is found in are typically involved in regulating polymer accumulation in bacteria, for example the production of poly-beta-hydroxybutyrate (PHB) which is formed via the polymerisation of D(-)-3-hydroxybutyryl-CoA []. The function of this domain is unknown.
Probab=22.25 E-value=1.9e+02 Score=18.45 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhhHHhHHHHHHHHHHHHh
Q psy12900 65 RCLRYAIRCVGKDFAHLLEPLVKQIVVLYS 94 (344)
Q Consensus 65 ~~lr~~~r~~~~~~~pll~~i~~~l~~~f~ 94 (344)
.+|+..+|..|..+..+++.-++.=...|.
T Consensus 4 ~~L~qlIrfyg~~mQ~~m~~YLEqS~~~f~ 33 (41)
T PF05233_consen 4 EFLRQLIRFYGPSMQGMMGSYLEQSMQMFA 33 (41)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHH
Confidence 578888999998888888888777666664
No 92
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.19 E-value=9.4e+02 Score=25.36 Aligned_cols=236 Identities=14% Similarity=0.073 Sum_probs=123.0
Q ss_pred HHHHHHHh-ccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcchHHHHHH
Q psy12900 46 IFKTCETY-QQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDM 124 (344)
Q Consensus 46 l~~il~~~-~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~~~~~~~l~~~ 124 (344)
+.+++... ..|..++|.+-..++.-+.+-+.. -++..++..|-.++..-.+.+.. ...+|+.. .+
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~y~~~t~s~~~~~il~----~~~~P~~K-~~--- 71 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREP------WLVNGLVDYYLSTNSQRALEILV----GVQEPHDK-HL--- 71 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchH------HHHHHHHHHHhhcCcHHHHHHHH----hcCCccHH-HH---
Confidence 44444443 356778888888777776664332 33666777777777655554442 12223322 22
Q ss_pred HHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccc---cCchhhHHHHHHHHHhcccCc-chhHHHHHHHHH
Q psy12900 125 VQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAF---LTSSFISSVMQCGILATHLDH-REANSTVMKFFY 200 (344)
Q Consensus 125 ~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~l---l~s~~l~~l~~~al~~L~~~e-~~~~~aa~~Fl~ 200 (344)
+..+.. .+. .|+-=-..+.|+..++++.|.-+ ...|++..++.|. ..+. .-++-+|+.+|.
T Consensus 72 ~~~l~~----~~~-------~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L----~~D~~~~~~~~al~~Li 136 (668)
T PF04388_consen 72 FDKLND----YFV-------KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCL----QFDTSITVVSSALLVLI 136 (668)
T ss_pred HHHHHH----HHc-------CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHH----hhcccHHHHHHHHHHHH
Confidence 222221 121 24444556778889999999875 3568888888864 3333 334667788888
Q ss_pred HHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccch----hcHHHHHHHHHHhCHHH
Q psy12900 201 DLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMM----ADVADVLYELISVDRQV 276 (344)
Q Consensus 201 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~----~~~a~vL~~L~~~~~~~ 276 (344)
-|+-+-..+ ....+.+++.-+|..+.=.. .--+..+.... ..+...+.-|-..||-.
T Consensus 137 mlLP~ip~~-----------------l~~~L~~Lf~If~Rl~~W~~--~~~~~~~~~~~~~l~~~~~~lFt~LYGlyP~N 197 (668)
T PF04388_consen 137 MLLPHIPSS-----------------LGPHLPDLFNIFGRLLSWER--KNPGSVPEVYLIHLQASVYALFTRLYGLYPCN 197 (668)
T ss_pred HHhccccch-----------------hhHHHHHHHHHHHHHHHccc--CCCCCccccccccchhhHHHHHHHHHhcccch
Confidence 777654221 12234444444443331111 00011111111 11223455566778888
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhc-----------h-hhcHHHHHHHHHHHHHHhcc
Q psy12900 277 SNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRS-----------E-SAYDVGQALKELSRLYRKHM 335 (344)
Q Consensus 277 ~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~-----------~-~~r~~~~~v~~F~~~cr~~~ 335 (344)
|..++++-.....+. ..-++.-+.|++.+.-- . ..|..+.-..|...-|.++.
T Consensus 198 F~~flr~~y~~~~~~------~~~~~~i~p~l~~~~lHP~l~t~t~e~Eld~~RW~~~E~~dvv~eC~~l~ 262 (668)
T PF04388_consen 198 FLSFLRQHYSSKENF------DIFQEVIKPLLQQHRLHPNLVTSTIESELDPTRWKKMEPHDVVAECMSLS 262 (668)
T ss_pred HHHHHHHHHhcccCh------hhHHHHHHHHHHHHccCHHhCcCChhhccChhhhhcCCHHHHHHHHHhcC
Confidence 888888666532121 11122233455443221 1 22455555677778887763
No 93
>PRK10167 hypothetical protein; Provisional
Probab=21.85 E-value=3.4e+02 Score=23.16 Aligned_cols=72 Identities=7% Similarity=-0.051 Sum_probs=41.3
Q ss_pred chhcHHHHHHHHHHhCH--HHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhhcHHHHHHHHHHHHHHhcc
Q psy12900 258 MMADVADVLYELISVDR--QVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRKHM 335 (344)
Q Consensus 258 ~~~~~a~vL~~L~~~~~--~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~r~~~~~v~~F~~~cr~~~ 335 (344)
..+.+.+.|....+.-| ....+-+.++.+=+-. .+|.+||+.|.+.|-..+.++--..+.-++-+.+-+..
T Consensus 71 ~~~~Y~~~lm~al~~~~t~~~~~NvL~Hi~GYFKk-------~Ls~~EKq~l~~lI~~Yr~g~vpl~vpltlL~h~~~~y 143 (169)
T PRK10167 71 FYNQYRQRVIVLLSHPANVRDHTNVLMHVQGYFRP-------HIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALY 143 (169)
T ss_pred HHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHh-------hCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHC
Confidence 34445555554444433 2356666666665422 68999999999999888765433333334444333333
Q ss_pred C
Q psy12900 336 K 336 (344)
Q Consensus 336 ~ 336 (344)
+
T Consensus 144 ~ 144 (169)
T PRK10167 144 P 144 (169)
T ss_pred C
Confidence 3
No 94
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.31 E-value=1.9e+02 Score=25.16 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCcccccCchhhHHHHHH---------------HHHhcccCcchhHHHHHHHHHHHhhcCC
Q psy12900 150 DDLFRLCTRFLQRAPIAFLTSSFISSVMQC---------------GILATHLDHREANSTVMKFFYDLIHNNR 207 (344)
Q Consensus 150 ed~f~L~~r~l~~~P~~ll~s~~l~~l~~~---------------al~~L~~~e~~~~~aa~~Fl~~li~~~~ 207 (344)
.+.-+++-+|++.-|.-+++....+.+++. .+..|-..++...+..+.||..+.....
T Consensus 75 h~va~~lK~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~ 147 (203)
T cd04386 75 HAVASALKSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSD 147 (203)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455566667777776665444433332 2334444566666666777777666543
No 95
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=21.03 E-value=7.4e+02 Score=23.71 Aligned_cols=209 Identities=12% Similarity=0.140 Sum_probs=0.0
Q ss_pred hHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHhcCCcchHHH
Q psy12900 45 TIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHP---HSSFLYLGSILVDEYATSHCVSGL 121 (344)
Q Consensus 45 il~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~---~~~~L~l~s~lv~~fg~~~~~~~l 121 (344)
+++++++.+.+. ++..++++..+..-+.. .+...|+..|..+-...| ...||..+-+......+ .+.+
T Consensus 117 fl~KlL~i~q~~----~at~~Ii~~L~~~~~~~--~l~~~i~~tL~~gi~~~p~~~~~PfLrAalvfce~s~~---~~~v 187 (337)
T PF12030_consen 117 FLDKLLEIDQNP----EATHSIIKRLLRASPDA--GLQDSIFKTLEEGIRGQPAQLCDPFLRAALVFCERSPD---ADRV 187 (337)
T ss_pred HHHHHHhccCCh----HHHHHHHHHHHhCCccc--chHHHHHHHHHcccccCchhhhhHHHHHHHHHHHcCCC---HHHH
Q ss_pred HHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHH
Q psy12900 122 LDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYD 201 (344)
Q Consensus 122 ~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~ 201 (344)
.+++..++..+-.+=++ +=.++=|-..+.|.+-+.-+...+. .+.+-.++.+=+||=.-|.-.++..-..+-.||.+
T Consensus 188 ~~li~~Va~~~~sl~~~--~G~~fL~Ff~~ll~~~n~~~~~~~~-~~~~~~le~ip~WAP~LL~y~d~~VR~~Te~fL~~ 264 (337)
T PF12030_consen 188 QDLIRHVAKQVRSLQNA--EGRAFLDFFRGLLNLRNERIGEDRA-WFLSLVLERIPDWAPGLLGYPDRSVRNGTEDFLQE 264 (337)
T ss_pred HHHHHHHHHHhcccccC--CcHhHHHHHHHHHhCcCccccccHH-HHHHHHHHcccccchHhhCCCchhHHHHHHHHHHH
Q ss_pred HhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHHhCHHHH
Q psy12900 202 LIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVS 277 (344)
Q Consensus 202 li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~~~~~~ 277 (344)
++-...... ..++.+...+++....|.+-+..|=..-...-.-..-...++-+...+.+|....
T Consensus 265 ~lF~~~~~~------------~~~d~~~~~~~~~R~Lg~~Cl~yLr~~yv~~~~~~v~~~~~~~i~~VI~~C~~~Y 328 (337)
T PF12030_consen 265 LLFSKEAED------------DDEDTRQRYREIARQLGQACLEYLRDTYVRRRRAQVERRTVESILRVIEHCLETY 328 (337)
T ss_pred HhCCCCccc------------cChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH
No 96
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=20.94 E-value=3e+02 Score=24.18 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCcccccCchhhHHHHHHH------------------HHhcccCcchhHHHHHHHHHHHhhcCCC
Q psy12900 150 DDLFRLCTRFLQRAPIAFLTSSFISSVMQCG------------------ILATHLDHREANSTVMKFFYDLIHNNRV 208 (344)
Q Consensus 150 ed~f~L~~r~l~~~P~~ll~s~~l~~l~~~a------------------l~~L~~~e~~~~~aa~~Fl~~li~~~~~ 208 (344)
.+.-+++-+|+|.-|.-+++......+++++ +..|-..++...+..+.||..+...+..
T Consensus 74 h~vA~lLK~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~ 150 (207)
T cd04379 74 NVITGVLKDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSER 150 (207)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 4456677788888888888776555544432 2223335555666666677666665433
No 97
>PF11254 DUF3053: Protein of unknown function (DUF3053); InterPro: IPR021413 Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.
Probab=20.90 E-value=1.4e+02 Score=26.80 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHH
Q psy12900 277 SNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQ 310 (344)
Q Consensus 277 ~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~ 310 (344)
|-+||++.+..-|.. +-+.+|++||+.|-.-
T Consensus 30 Fi~fLQ~~i~~~~g~---~vp~Lte~qKk~FG~Y 60 (229)
T PF11254_consen 30 FIDFLQNRIMRSPGV---RVPTLTEDQKKAFGDY 60 (229)
T ss_pred HHHHHHHHHHHhcCC---CCCCCCHHHHHHhCch
Confidence 789999876654554 4567999999998544
No 98
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=20.11 E-value=43 Score=21.68 Aligned_cols=14 Identities=36% Similarity=0.878 Sum_probs=10.1
Q ss_pred CCCCCchHHHHHHH
Q psy12900 142 LKNHPDTVDDLFRL 155 (344)
Q Consensus 142 ~~~~PDvved~f~L 155 (344)
+.+|||++++|-.+
T Consensus 32 l~~hpdLl~~F~~F 45 (47)
T PF02671_consen 32 LRGHPDLLEEFNRF 45 (47)
T ss_dssp TTT-HHHHHHHHHH
T ss_pred HccCHHHHHHHHhh
Confidence 35789999998765
No 99
>KOG1240|consensus
Probab=20.08 E-value=1.3e+03 Score=26.30 Aligned_cols=190 Identities=12% Similarity=0.062 Sum_probs=94.3
Q ss_pred cchhhHHHHHHHHhhhccCccCCCCcchHHHHHhh-hhHHHHHHHhccchHH--HHHHHHHHHHHHHHhhhhhHHhHHHH
Q psy12900 9 VSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNK-GTIFKTCETYQQDARV--MEHSSRCLRYAIRCVGKDFAHLLEPL 85 (344)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i-pil~~il~~~~~d~~v--vE~~c~~lr~~~r~~~~~~~pll~~i 85 (344)
.+.+-|+|.+++-+.+.+ + ..++++ |.+-.+++.=..+.++ +|.+|+++-..=.....+..-+.+-|
T Consensus 439 tK~~ALeLl~~lS~~i~d----e------~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYl 508 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDD----E------VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYL 508 (1431)
T ss_pred hHHHHHHHHHHHhhhcch----H------HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhh
Confidence 355667777777666433 1 336777 8887777665555444 77788887532211122211111112
Q ss_pred HHHHHHHHhc--------CCCccHHHHHHHHHH------------HhcC--------CcchHHHHHHHHHhHHHHHHhhc
Q psy12900 86 VKQIVVLYSK--------HPHSSFLYLGSILVD------------EYAT--------SHCVSGLLDMVQAFLPPTYAILQ 137 (344)
Q Consensus 86 ~~~l~~~f~~--------~~~~~~L~l~s~lv~------------~fg~--------~~~~~~l~~~~~~l~~~~~~~l~ 137 (344)
+..|...-.. +..+|.-.+|.+... ++.+ +.+...++++...+.+.+..++.
T Consensus 509 fP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLls 588 (1431)
T KOG1240|consen 509 FPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLS 588 (1431)
T ss_pred hhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHc
Confidence 2222221111 011111122211110 0111 23445566666666666777766
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhCccccc--------C-----------------------chhhHHHHHHHHHhccc
Q psy12900 138 EEDGLKNHPDTVDDLFRLCTRFLQRAPIAFL--------T-----------------------SSFISSVMQCGILATHL 186 (344)
Q Consensus 138 ~~~~~~~~PDvved~f~L~~r~l~~~P~~ll--------~-----------------------s~~l~~l~~~al~~L~~ 186 (344)
..+.+.-. -++++...||.=|.+..-.-++ . -.+-+-++-+-..||+-
T Consensus 589 d~~~~Vkr-~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 589 DSPPIVKR-ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTD 667 (1431)
T ss_pred CCchHHHH-HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccC
Confidence 53212111 2556666666444333222111 0 01122333455568888
Q ss_pred CcchhHHHHHHHHHHHhhcCCCC
Q psy12900 187 DHREANSTVMKFFYDLIHNNRVL 209 (344)
Q Consensus 187 ~e~~~~~aa~~Fl~~li~~~~~~ 209 (344)
.|...+.+|+.-++.|+..+.-.
T Consensus 668 ~EE~Viv~aL~~ls~Lik~~ll~ 690 (1431)
T KOG1240|consen 668 GEEAVIVSALGSLSILIKLGLLR 690 (1431)
T ss_pred cchhhHHHHHHHHHHHHHhcccc
Confidence 88889999999999999987544
Done!