Query psy12900
Match_columns 344
No_of_seqs 109 out of 346
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 22:38:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x1g_F Cadmus; transport prote 100.0 6E-38 2E-42 334.4 28.0 300 15-337 659-969 (971)
2 2x19_B Importin-13; nuclear tr 100.0 1E-33 3.6E-38 301.1 32.8 286 32-342 673-962 (963)
3 3m1i_C Exportin-1; heat repeat 99.9 1.8E-22 6.1E-27 217.0 25.7 263 32-336 716-1009(1049)
4 4hat_C Exportin-1; heat repeat 99.8 1.5E-18 5.1E-23 185.2 29.1 278 32-336 678-1009(1023)
5 3gjx_A Exportin-1; transport, 99.8 1.6E-17 5.3E-22 177.2 28.4 292 15-336 688-1029(1073)
6 3ibv_A Exportin-T; karyopherin 99.7 5.4E-17 1.9E-21 172.8 16.9 273 31-333 688-977 (980)
7 1w9c_A CRM1 protein, exportin 99.2 7.4E-09 2.5E-13 95.6 27.1 263 29-334 31-319 (321)
8 3a6p_A Exportin-5; exportin-5, 99.2 6E-13 2.1E-17 144.7 -0.7 289 32-338 761-1164(1204)
9 4fdd_A Transportin-1; heat rep 97.8 0.0017 5.9E-08 67.7 20.3 158 39-206 523-701 (852)
10 2bpt_A Importin beta-1 subunit 97.1 0.077 2.6E-06 54.6 23.3 139 56-206 569-713 (861)
11 2bpt_A Importin beta-1 subunit 96.7 0.06 2.1E-06 55.4 18.1 157 38-206 494-670 (861)
12 1wa5_C Importin alpha RE-expor 95.9 1.1 3.9E-05 47.1 22.9 230 44-286 496-764 (960)
13 4fdd_A Transportin-1; heat rep 95.8 0.4 1.4E-05 49.7 18.5 141 56-206 642-786 (852)
14 1qgr_A Protein (importin beta 95.7 0.52 1.8E-05 48.4 18.7 119 57-185 622-744 (876)
15 2x19_B Importin-13; nuclear tr 95.6 2.7 9.1E-05 43.9 25.0 159 44-207 529-717 (963)
16 1qgr_A Protein (importin beta 95.6 0.89 3E-05 46.7 19.8 159 45-206 452-639 (876)
17 2x1g_F Cadmus; transport prote 95.5 0.81 2.8E-05 48.1 19.5 51 44-96 546-596 (971)
18 2qk2_A LP04448P; mini spindles 94.8 1.7 5.9E-05 37.4 17.4 150 41-205 55-206 (242)
19 1w9c_A CRM1 protein, exportin 94.8 2.1 7.3E-05 39.2 17.5 177 9-205 45-246 (321)
20 1ibr_B P95, importin beta-1 su 93.8 4.4 0.00015 37.8 20.5 139 56-205 143-289 (462)
21 4hat_C Exportin-1; heat repeat 92.5 7 0.00024 41.6 19.2 143 55-206 465-620 (1023)
22 1u6g_C TIP120 protein, CAND1; 92.3 6.3 0.00022 42.4 18.9 141 57-204 491-637 (1230)
23 1u6g_C TIP120 protein, CAND1; 92.0 2.8 9.6E-05 45.2 15.7 164 38-206 515-723 (1230)
24 3ibv_A Exportin-T; karyopherin 91.7 4.9 0.00017 42.5 16.8 160 44-205 535-731 (980)
25 1wa5_C Importin alpha RE-expor 88.5 2.6 8.7E-05 44.4 11.4 157 31-203 630-790 (960)
26 3a6p_A Exportin-5; exportin-5, 87.7 4.9 0.00017 43.6 13.1 121 144-287 314-472 (1204)
27 3m1i_C Exportin-1; heat repeat 87.5 11 0.00038 39.9 15.7 70 44-113 540-621 (1049)
28 3gjx_A Exportin-1; transport, 85.4 33 0.0011 36.6 17.7 142 55-205 491-645 (1073)
29 2qk1_A Protein STU2; STU2P, XM 85.2 16 0.00055 31.7 13.1 142 54-207 72-223 (249)
30 2qk1_A Protein STU2; STU2P, XM 73.1 45 0.0015 28.7 12.9 119 128-275 105-224 (249)
31 4ffb_C Protein STU2; tubulin f 63.5 73 0.0025 27.5 12.5 64 144-207 151-215 (278)
32 4b8j_A Importin subunit alpha- 61.2 1E+02 0.0034 29.2 12.8 137 55-204 172-315 (528)
33 4db8_A Armadillo-repeat protei 58.6 79 0.0027 26.3 15.3 142 53-205 22-168 (252)
34 1ibr_B P95, importin beta-1 su 58.4 1.1E+02 0.0037 27.9 15.9 144 55-204 229-395 (462)
35 2qk2_A LP04448P; mini spindles 56.3 88 0.003 26.1 14.9 155 83-275 55-209 (242)
36 1wa5_B Importin alpha subunit; 52.7 1.6E+02 0.0053 27.9 15.6 157 37-206 252-414 (530)
37 1l6x_B Minimized B-domain of p 40.5 22 0.00076 20.8 2.4 15 298-312 17-31 (34)
38 3gvo_A Pumilio 2, pumilio homo 40.4 92 0.0031 28.2 8.3 12 301-312 309-320 (351)
39 4b8j_A Importin subunit alpha- 40.0 2.4E+02 0.0082 26.4 14.2 157 37-205 239-401 (528)
40 4db6_A Armadillo repeat protei 38.6 1.5E+02 0.0051 23.7 14.6 149 44-205 15-168 (210)
41 4hxt_A De novo protein OR329; 37.1 1.7E+02 0.0058 23.8 12.9 201 41-280 43-250 (252)
42 1zda_A Mini protein A domain, 29.0 24 0.00083 21.1 1.4 15 298-312 22-36 (38)
43 3odn_A Dally-like protein; alp 27.1 3.5E+02 0.012 26.1 9.9 98 58-161 64-174 (506)
44 3grl_A General vesicular trans 26.4 4.2E+02 0.014 26.4 10.7 37 128-165 209-245 (651)
45 2jdq_A Importin alpha-1 subuni 26.3 3.5E+02 0.012 24.2 11.0 155 41-204 233-390 (450)
46 3bbz_A P protein, phosphoprote 25.9 1.1E+02 0.0039 19.4 4.2 28 301-328 18-45 (49)
47 2kj8_A Putative prophage CPS-5 25.2 1.9E+02 0.0066 20.7 6.8 50 277-332 34-86 (118)
48 3ajm_A Programmed cell death p 23.2 44 0.0015 28.3 2.5 59 240-312 67-125 (213)
49 1n6j_G Calcineurin-binding pro 21.9 91 0.0031 17.7 2.8 22 295-316 5-26 (35)
50 1vsy_4 Proteasome activator BL 21.7 6.5E+02 0.022 25.6 12.6 154 44-205 519-688 (799)
51 3lys_A Prophage PI2 protein 01 21.0 2.1E+02 0.0072 20.3 5.9 35 297-331 49-86 (112)
No 1
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=6e-38 Score=334.38 Aligned_cols=300 Identities=13% Similarity=0.219 Sum_probs=256.8
Q ss_pred HHHHHHHhhhccCccCCC-----CcchHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHH
Q psy12900 15 ALSQHFTKHVQHSAVCRC-----SFLCPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQ 88 (344)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~-----~~p~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~ 88 (344)
....+.++.+++...+.. +||+.++++++ |++..+++.|..|.+++|++|++++.+++.+|.++.|++|++++.
T Consensus 659 ~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~ 738 (971)
T 2x1g_F 659 NMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLF 738 (971)
T ss_dssp HHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHH
T ss_pred HHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHH
Confidence 344566666655433222 68999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHhcC-CcchHHHHHHHHHhHHHHHHhhcCC--CCCCCCCchHHHHHHHHHHHHHhCcc
Q psy12900 89 IVVLYSKHPHSSFLYLGSILVDEYAT-SHCVSGLLDMVQAFLPPTYAILQEE--DGLKNHPDTVDDLFRLCTRFLQRAPI 165 (344)
Q Consensus 89 l~~~f~~~~~~~~L~l~s~lv~~fg~-~~~~~~l~~~~~~l~~~~~~~l~~~--~~~~~~PDvved~f~L~~r~l~~~P~ 165 (344)
+...|+.++++|+||+++.++..||. +.+.+.+.+++..++.+++.++++. +.++++||++++||+|+.++++++|.
T Consensus 739 l~~~~~~~~~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~ 818 (971)
T 2x1g_F 739 IVASFQTRCCAPTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQ 818 (971)
T ss_dssp HHHHCC--CCHHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHhcCCchHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcH
Confidence 99999999999999999999999999 7788899999999999999999873 25678999999999999999999999
Q ss_pred cccCchh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHH
Q psy12900 166 AFLTSSF-ISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVS 244 (344)
Q Consensus 166 ~ll~s~~-l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~ 244 (344)
.++++|. ++.++++++.+++.+|+++.+++++||+.+++.... .+.+++++.++|+.|+.
T Consensus 819 ~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~-------------------~~~~~~~~~~~g~~l~~ 879 (971)
T 2x1g_F 819 VLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRN-------------------HAHVTEVVLATGEQTLY 879 (971)
T ss_dssp GGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTT-------------------CHHHHHHHHHHHHHHHH
T ss_pred HHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCc-------------------hHHHHHHHHHhHHHHHH
Confidence 9999999 999999999999999999999999999999988421 24688999999999999
Q ss_pred HHHHHchhccCccchhcHHHHHHHHHHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhch-hhcHHHHH
Q psy12900 245 NLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSE-SAYDVGQA 323 (344)
Q Consensus 245 ~ll~~l~g~~prs~~~~~a~vL~~L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~-~~r~~~~~ 323 (344)
.++.+++|+.||+.+++++++|++|..++|.++++||.+++.. |.+ |+..+++++|++|++++++++ +.|++|+.
T Consensus 880 ~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~~l~~-~~~---p~~~~~~~~~~~f~~~l~~~~~~~r~~~~~ 955 (971)
T 2x1g_F 880 TAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMKSLMST-PNF---PTQLITDADKTRYTALIIKEKVNKRLLQQH 955 (971)
T ss_dssp HHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHTS-SSC---SCSSSCHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHHHHhcc-cCC---CCCcCCHHHHHHHHHHHHHHHhChHhHHHH
Confidence 9999999999999999999999999999999999999999962 233 445899999999999999886 78999999
Q ss_pred HHHHHHHHHhccCc
Q psy12900 324 LKELSRLYRKHMKY 337 (344)
Q Consensus 324 v~~F~~~cr~~~~~ 337 (344)
+++||..|||+.|+
T Consensus 956 ~~~f~~~~r~~~~~ 969 (971)
T 2x1g_F 956 LSEMAMKTRGLTEK 969 (971)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHcCcccc
Confidence 99999999999886
No 2
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1e-33 Score=301.06 Aligned_cols=286 Identities=23% Similarity=0.341 Sum_probs=255.1
Q ss_pred CCcchHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q psy12900 32 CSFLCPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVD 110 (344)
Q Consensus 32 ~~~p~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~ 110 (344)
.++|+..+.+++ |++..+++.|..+.+++|.+|++++.++..+|.++.|++|++++.+...|..++.++++++++.++.
T Consensus 673 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~ 752 (963)
T 2x19_B 673 GPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVH 752 (963)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 468999999999 9999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred HhcC-CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchh-hHHHHHHHHHhcccCc
Q psy12900 111 EYAT-SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSF-ISSVMQCGILATHLDH 188 (344)
Q Consensus 111 ~fg~-~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~-l~~l~~~al~~L~~~e 188 (344)
.||. +.+.+.+.++++.+...++.+++. .+.++||+.++||.|+.++++++|..+++++. +..++++++.+++.+|
T Consensus 753 ~f~~~~~~~~~~~~~l~~~~~~~l~~~~~--~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 830 (963)
T 2x19_B 753 IFAHEPAHFPPIEALFLLVTSVTLTLFQQ--GPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPE 830 (963)
T ss_dssp HHTTCTTTCHHHHHHHHHHHHHHHHHHHH--CTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSC
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHhh--CcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCC
Confidence 9998 667788889999999999999985 77889999999999999999999999998887 9999999999999999
Q ss_pred chhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHH
Q psy12900 189 REANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYE 268 (344)
Q Consensus 189 ~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~ 268 (344)
+++++++++||.++++...... .+++++.++|+.|+..++.++.|+.|++.+++++++|+.
T Consensus 831 ~~~~~~~l~~l~~l~~~~~~~~-------------------~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~ 891 (963)
T 2x19_B 831 APTVKASCGFFTELLPRCGEVE-------------------SVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFA 891 (963)
T ss_dssp HHHHHHHHHHHHHHGGGTTSSC-------------------HHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCChH-------------------HHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHH
Confidence 9999999999999998754222 567888899999999999999999999999999999999
Q ss_pred HHHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhch-hhcHHHHHHHHHHHHHHhccCcccccc
Q psy12900 269 LISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSE-SAYDVGQALKELSRLYRKHMKYNYSYH 342 (344)
Q Consensus 269 L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~-~~r~~~~~v~~F~~~cr~~~~~~y~~~ 342 (344)
|..++|..+.+|+.+.+.. +.+ |+..+++++|++|++++++.+ +.|++|+.++|||..|||..|++||+.
T Consensus 892 l~~~~~~~~~~~l~~~l~~-~~~---p~~~~~~~~~~~f~~~l~~~~~~~~~f~~~l~~F~~~~r~~~~~~~~~~ 962 (963)
T 2x19_B 892 LNKHCFSLLSMWIKEALQP-PGF---PSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGLHGTDYTAD 962 (963)
T ss_dssp HHHHSHHHHHHHHHHHTCS-TTS---SCTTCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHChHHHHHHHHHHhcc-cCC---CCCcCCHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCccCcccccc
Confidence 9999999999999999851 222 344899999999999999887 779999999999999999999999985
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.90 E-value=1.8e-22 Score=216.97 Aligned_cols=263 Identities=18% Similarity=0.214 Sum_probs=224.3
Q ss_pred CCcchHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCcc-----HHHHH
Q psy12900 32 CSFLCPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSS-----FLYLG 105 (344)
Q Consensus 32 ~~~p~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~-----~L~l~ 105 (344)
..||+...++.+ |.+.++++.|.++.+++|.+ +.|++|++++.+...|++ ++++ +|+++
T Consensus 716 ~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~--------------~~~~~~~~l~~ll~~~~~-~~~~~~~~~~l~l~ 780 (1049)
T 3m1i_C 716 TKTPKVRGLRTIKKEILKLVETYISKARNLDDV--------------VKVLVEPLLNAVLEDYMN-NVPDARDAEVLNCM 780 (1049)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHH--------------HHHTHHHHHHHHHHHHHH-SCGGGCCTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--------------HHHHHHHHHHHHHHHHHh-CCcccccHHHHHHH
Confidence 468888888888 88888888887766555543 568899999999999987 4666 99999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccC-chh-hHHHHHHHHHh
Q psy12900 106 SILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLT-SSF-ISSVMQCGILA 183 (344)
Q Consensus 106 s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~-s~~-l~~l~~~al~~ 183 (344)
+.++..||. ...+.+.+++..+.+.++.++++ +++++||+.++||.|+.+++++||..+++ +|. +..++++++.|
T Consensus 781 ~~ii~~~~~-~~~~~l~~i~~~l~~~~~~~i~~--~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~a 857 (1049)
T 3m1i_C 781 TTVVEKVGH-MIPQGVILILQSVFECTLDMINK--DFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWA 857 (1049)
T ss_dssp HHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHSS--CSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHhc--chhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999995 77788999999999999999985 78899999999999999999999999885 554 89999999999
Q ss_pred cccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHH
Q psy12900 184 THLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVA 263 (344)
Q Consensus 184 L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a 263 (344)
++.+|+++.+++++||.+++....... + .+..+....++|..|+..++..+.+..+++..+..+
T Consensus 858 l~~~~~~~~~~~l~~l~~l~~~~~~~~--------------~--~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~ 921 (1049)
T 3m1i_C 858 FKHNNRDVEVNGLQIALDLVKNIERMG--------------N--VPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQA 921 (1049)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHHHHHSC--------------S--CHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHH
T ss_pred hCCCCchHHHHHHHHHHHHHHHHHhcC--------------C--hHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHH
Confidence 999999999999999999999864311 0 124567788999999999999999999999999999
Q ss_pred HHHHHHHHh---------------------CHHHHHHHHHHHHhh-CCCCCCCCCCCCCHHHHHHHHHHHHhchhhc-HH
Q psy12900 264 DVLYELISV---------------------DRQVSNQWLQDTISQ-LPKNTPAGMNAATPEQLIEFHSQVTRSESAY-DV 320 (344)
Q Consensus 264 ~vL~~L~~~---------------------~~~~~~~Wl~~~l~~-lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~r-~~ 320 (344)
++|+.|... +...+++|+.+.+.+ .| +++++|++.|++.++..++.+ ++
T Consensus 922 ~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~f~~~l~~~~~~~~~f 993 (1049)
T 3m1i_C 922 LLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFP--------HLTSEQIASFLSALTKQYKDLVVF 993 (1049)
T ss_dssp HHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCT--------TSCHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHccCCHHHH
Confidence 999999752 223578999988843 32 589999999999999888765 79
Q ss_pred HHHHHHHHHHHHhccC
Q psy12900 321 GQALKELSRLYRKHMK 336 (344)
Q Consensus 321 ~~~v~~F~~~cr~~~~ 336 (344)
|++|||||..||+..|
T Consensus 994 ~~~~rdf~~~~~~~~~ 1009 (1049)
T 3m1i_C 994 KGTLRDFLVQIKEVGG 1009 (1049)
T ss_dssp HHHHHHHHHHHTSSSC
T ss_pred HHHHHHHhHhhhhhcC
Confidence 9999999999999876
No 4
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.83 E-value=1.5e-18 Score=185.23 Aligned_cols=278 Identities=15% Similarity=0.164 Sum_probs=230.3
Q ss_pred CCcchHHHHHhh-hhHHHHHHHhccch--------HH-----HHHHHHHHHHHHHHhhhh-----------hHHhHHHHH
Q psy12900 32 CSFLCPFVCVNK-GTIFKTCETYQQDA--------RV-----MEHSSRCLRYAIRCVGKD-----------FAHLLEPLV 86 (344)
Q Consensus 32 ~~~p~~~~~~~i-pil~~il~~~~~d~--------~v-----vE~~c~~lr~~~r~~~~~-----------~~pll~~i~ 86 (344)
..|++.+.++.+ |.+-.+.+.|.+.. .+ ..+.||++|+.+-.+-.. ...++++++
T Consensus 678 lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~ 757 (1023)
T 4hat_C 678 MGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLL 757 (1023)
T ss_dssp HGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHH
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHH
Confidence 447788888888 87777766664321 11 336788877664442211 345889999
Q ss_pred HHHHHHHhcC----CCccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHh
Q psy12900 87 KQIVVLYSKH----PHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQR 162 (344)
Q Consensus 87 ~~l~~~f~~~----~~~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~ 162 (344)
+.+..-|..+ ++|++|++.+++|+.+|. .+.+.+..+++.+...|+.+++. ++.++||..++||+|+.++.++
T Consensus 758 ~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~-~~~~~~~~il~~vf~~Tl~mi~~--~~~~~Pe~r~~ff~ll~~~~~~ 834 (1023)
T 4hat_C 758 NAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH-MIPQGVILILQSVFECTLDMINK--DFTEYPEHRVEFYKLLKVINEK 834 (1023)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHSS--CSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCChhhccHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHhc--ccccChHHHHHHHHHHHHHHHH
Confidence 9999999987 559999999999999996 78889999999999999999996 9999999999999999999999
Q ss_pred CcccccCch--hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhH
Q psy12900 163 APIAFLTSS--FISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQ 240 (344)
Q Consensus 163 ~P~~ll~s~--~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~ 240 (344)
||..|+..| .+..+++|++-|++.+||++..++++|+.+++....... ..+..+++..+++.
T Consensus 835 ~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~----------------~~~~~~~f~~~~~~ 898 (1023)
T 4hat_C 835 SFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG----------------NVPFANEFHKNYFF 898 (1023)
T ss_dssp CTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC----------------SSHHHHHHHHHHHH
T ss_pred ChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHHH
Confidence 999998765 799999999999999999999999999999998754321 01356788999999
Q ss_pred HHHHHHHHHchhccCccchhcHHHHHHHHHHh---------------------CHHHHHHHHHHHHhh-CCCCCCCCCCC
Q psy12900 241 ALVSNLLQACVFSLHTYMMADVADVLYELISV---------------------DRQVSNQWLQDTISQ-LPKNTPAGMNA 298 (344)
Q Consensus 241 ~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~---------------------~~~~~~~Wl~~~l~~-lp~~~~~~~~~ 298 (344)
.++..++..+......+....-+.+|..|... +..-.++|+.+.|.+ .| +
T Consensus 899 ~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~fp--------~ 970 (1023)
T 4hat_C 899 IFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFP--------H 970 (1023)
T ss_dssp HHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHHHHHHHHCT--------T
T ss_pred HHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHHHHHHHhCC--------C
Confidence 99999999999999999999999999888763 123478999999884 44 4
Q ss_pred CCHHHHHHHHHHHHhchh-hcHHHHHHHHHHHHHHhccC
Q psy12900 299 ATPEQLIEFHSQVTRSES-AYDVGQALKELSRLYRKHMK 336 (344)
Q Consensus 299 vt~~~k~~F~~~l~~~~~-~r~~~~~v~~F~~~cr~~~~ 336 (344)
+|++|.+.|++.+.+..+ ..+||.++|||....|..-|
T Consensus 971 ~~~~qi~~fv~~l~~~~~~~~~f~~~lrdfli~~ke~~~ 1009 (1023)
T 4hat_C 971 LTSEQIASFLSALTKQCKDLVVFKGTLRDFLVQIKEVGG 1009 (1023)
T ss_dssp SCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSSC
T ss_pred CCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHHhHhhcC
Confidence 789999999999998854 47999999999999876443
No 5
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.80 E-value=1.6e-17 Score=177.24 Aligned_cols=292 Identities=12% Similarity=0.159 Sum_probs=237.2
Q ss_pred HHHHHHHhhhccCccCCCCcchHHHHHhh-hhHHHHHHHhccch--------H-----HHHHHHHHHHHHHHHh-----h
Q psy12900 15 ALSQHFTKHVQHSAVCRCSFLCPFVCVNK-GTIFKTCETYQQDA--------R-----VMEHSSRCLRYAIRCV-----G 75 (344)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~i-pil~~il~~~~~d~--------~-----vvE~~c~~lr~~~r~~-----~ 75 (344)
.-..+.+|. ++....+..||+.+.+..+ |-+..+.+.|++.. . ...+.||++|+.+-.+ +
T Consensus 688 ~~l~~il~~-n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~ 766 (1073)
T 3gjx_A 688 KQLGSILKT-NVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVS 766 (1073)
T ss_dssp HHHHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhh-hHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455552 2222234458888888888 76666655554321 1 3558999999766443 2
Q ss_pred hh------hHHhHHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCC
Q psy12900 76 KD------FAHLLEPLVKQIVVLYSK----HPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNH 145 (344)
Q Consensus 76 ~~------~~pll~~i~~~l~~~f~~----~~~~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~ 145 (344)
+. ...++|++++.+..-|.. .++|++|++.+++|+.+|. ...+.+..+++.+...|+.+++. ++.++
T Consensus 767 ~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~-~~~~~~~~il~~vf~~Tl~mi~~--~f~~~ 843 (1073)
T 3gjx_A 767 RSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGG-HITAEIPQIFDAVFECTLNMINK--DFEEY 843 (1073)
T ss_dssp TCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGG-GTGGGHHHHHHHHHHHHHHHHSS--CSSSC
T ss_pred cCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHhC--CcccC
Confidence 22 456889999999999997 5999999999999999997 66788999999999999999997 99999
Q ss_pred CchHHHHHHHHHHHHHhCcccccCch--hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcch
Q psy12900 146 PDTVDDLFRLCTRFLQRAPIAFLTSS--FISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEED 223 (344)
Q Consensus 146 PDvved~f~L~~r~l~~~P~~ll~s~--~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~ 223 (344)
||...+||+|+.++.++|+..|+..| .+..+++|++-|++..||++..++++++.+++......+
T Consensus 844 Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~------------- 910 (1073)
T 3gjx_A 844 PEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEE------------- 910 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCH-------------
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcCh-------------
Confidence 99999999999999999999998754 589999999999999999999999999999998753221
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHHh-----------------CHHHHHHHHHHHHh
Q psy12900 224 FDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISV-----------------DRQVSNQWLQDTIS 286 (344)
Q Consensus 224 ~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~-----------------~~~~~~~Wl~~~l~ 286 (344)
+..++...+++..++..++..+......+....-+.+|..|... +..-.++|+.+.|.
T Consensus 911 -----~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~il~~l~~~~~~~~i~~~l~~~~~~~n~~~~~~~~~~~l~ 985 (1073)
T 3gjx_A 911 -----AAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLK 985 (1073)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHHHHHHHHHHTTTCCSCSSSCTTTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHHHHHHHHHHHcCCccccccccCCCccHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999988888888653 23347999999884
Q ss_pred -hCCCCCCCCCCCCCHHHHHHHHHHHHhch-hhcHHHHHHHHHHHHHHhccC
Q psy12900 287 -QLPKNTPAGMNAATPEQLIEFHSQVTRSE-SAYDVGQALKELSRLYRKHMK 336 (344)
Q Consensus 287 -~lp~~~~~~~~~vt~~~k~~F~~~l~~~~-~~r~~~~~v~~F~~~cr~~~~ 336 (344)
..| ++|++|.+.|++.+.+.. +..+||.++|||...-|...|
T Consensus 986 ~~fp--------~~~~~qi~~fv~~l~~~~~d~~~f~~~lrDFli~~ke~~~ 1029 (1073)
T 3gjx_A 986 SAFP--------HLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAG 1029 (1073)
T ss_dssp HHCT--------TSCHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTSCCT
T ss_pred HhCC--------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 444 489999999999999885 458999999999999887665
No 6
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.72 E-value=5.4e-17 Score=172.83 Aligned_cols=273 Identities=10% Similarity=0.088 Sum_probs=190.0
Q ss_pred CCCcchHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHH
Q psy12900 31 RCSFLCPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILV 109 (344)
Q Consensus 31 ~~~~p~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv 109 (344)
..++|+..++.++ +++..++++|..+..|.|++|++++++++++|.++.|++|++++.+...|+.+.+++|||+++.+|
T Consensus 688 ~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~fL~l~~qli 767 (980)
T 3ibv_A 688 SEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSFISQLI 767 (980)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4568899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcchHHHHHHHHHhHHHHHHhhcCCC----CCCCCCchHHHHHHHHHHHHH-hCcccccCc---hhhHHHHHHHH
Q psy12900 110 DEYATSHCVSGLLDMVQAFLPPTYAILQEED----GLKNHPDTVDDLFRLCTRFLQ-RAPIAFLTS---SFISSVMQCGI 181 (344)
Q Consensus 110 ~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~----~~~~~PDvved~f~L~~r~l~-~~P~~ll~s---~~l~~l~~~al 181 (344)
..||+ ++.+.+.+++..+.+++|.+|++.. .+++..|+-..||.|+..++. ..+.+|++. +.++.++.--+
T Consensus 768 ~~f~~-~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~ 846 (980)
T 3ibv_A 768 HIYKD-NMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSIL 846 (980)
T ss_dssp HHTTT-TSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHH
Confidence 99998 6888999999999999999998741 134568899999999999999 447777764 23444444333
Q ss_pred H-hcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHch-------hc
Q psy12900 182 L-ATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACV-------FS 253 (344)
Q Consensus 182 ~-~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~-------g~ 253 (344)
. |..++|..+.|.++.|++.++..-++.. ..+.+ ++.+-+ .+-.++.... ..
T Consensus 847 ~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~---------~~~gf-------~~f~~~----~~~~~f~~p~~~~f~~~Da 906 (980)
T 3ibv_A 847 HFANLVGEPATQKSSIALVSKMVSLWGGKD---------GIAGF-------ENFTLS----LTPLCFEMPVNPNFNTRDG 906 (980)
T ss_dssp HHC-----CHHHHHHHHHHHHHHHC----------------CCH-------HHHHHH----HHHHHHHGGGC--------
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHCCCC---------cchHH-------HHHHHH----HHHHHHHhhcCCCCChhhH
Confidence 2 2347899999999999999999864332 11111 222211 1112222221 11
Q ss_pred cCccchhcHHHHHHHHHHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchhhcHHHHHHHHHHHHHHh
Q psy12900 254 LHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRK 333 (344)
Q Consensus 254 ~prs~~~~~a~vL~~L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~r~~~~~v~~F~~~cr~ 333 (344)
-.+-.+.+++.++..+..+.++++-++|.+.. +|.- .++++..++|++++ ...+.|.||+-..+|...-||
T Consensus 907 q~~~~~~e~~~~~k~~~~~~g~~~~~~l~~~~--lp~~------~~~~~~~~~~~~~l-~~~~~k~f~~~~~~~~~~~~~ 977 (980)
T 3ibv_A 907 QSLVVLGELAGLQKIILEKLGDIYKSYLVTVY--FPTV------NFPDVMASEYLQAL-SNLDSRSFKQFFQKFIQALKS 977 (980)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTC----------CCHHHHHHHC-----------------CHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhc--CCcC------CCCHHHHHHHHHHH-hccchhhHHHHHHHHHHHhhc
Confidence 22334568899999999999999999987665 4543 68888999999999 455678899888888887765
No 7
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.24 E-value=7.4e-09 Score=95.64 Aligned_cols=263 Identities=12% Similarity=0.153 Sum_probs=209.0
Q ss_pred cCCCCcchHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcC----CCccHHH
Q psy12900 29 VCRCSFLCPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKH----PHSSFLY 103 (344)
Q Consensus 29 ~~~~~~p~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~----~~~~~L~ 103 (344)
+...++|....++.+ --+-++++.|-...+=.|.+ ...++|++++.+..-|+.+ +-|-.|.
T Consensus 31 ~~~~k~~~vr~lR~vKkeiLkLiet~i~~~~d~~~v--------------~~~~ippLl~~VL~DY~~~vp~aRepeVL~ 96 (321)
T 1w9c_A 31 EMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMV--------------AENFVPPLLDAVLIDYQRNVPAAREPEVLS 96 (321)
T ss_dssp SGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHH--------------HHHTHHHHHHHHHHHHHTSCGGGCCTHHHH
T ss_pred chhhccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--------------HHHHHHHHHHHHHHHHHhCCcccccHHHHH
Confidence 334467777777777 66666666665422111111 2457888888888888864 3366899
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCc--hhhHHHHHHHH
Q psy12900 104 LGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS--SFISSVMQCGI 181 (344)
Q Consensus 104 l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s--~~l~~l~~~al 181 (344)
+.+++|...|+ ...+.+...++.+.+.|+.+.+. ++.+.||.=..||.|+..+..+|...++.- +.+..++++.+
T Consensus 97 l~~tii~kl~~-~i~~~vp~Il~~VFe~TL~MI~~--df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsii 173 (321)
T 1w9c_A 97 TMAIIVNKLGG-HITAEIPQIFDAVFECTLNMINK--DFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSII 173 (321)
T ss_dssp HHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHHHSS--TTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHhc--ccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 99999999996 66678888889999999999998 999999999999999999999999998754 46899999999
Q ss_pred HhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhc
Q psy12900 182 LATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMAD 261 (344)
Q Consensus 182 ~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~ 261 (344)
=|.+..+|+..-..++-+.+++..-.+. .+..++...++-..++..++.-+......+-...
T Consensus 174 Wa~kH~~r~V~e~gL~il~~ll~n~~~~------------------~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~ 235 (321)
T 1w9c_A 174 WAFKHTMRNVADTGLQILFTLLQNVAQE------------------EAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTM 235 (321)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHHHHC------------------HHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHH
T ss_pred HHcCCCCchHHHHHHHHHHHHHHHHhcC------------------hHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHH
Confidence 9999999999999999999999875321 1356778889999999999999999999999999
Q ss_pred HHHHHHHHHHhC-----------------HHHHHHHHHHHHhh-CCCCCCCCCCCCCHHHHHHHHHHHHhchhh-cHHHH
Q psy12900 262 VADVLYELISVD-----------------RQVSNQWLQDTISQ-LPKNTPAGMNAATPEQLIEFHSQVTRSESA-YDVGQ 322 (344)
Q Consensus 262 ~a~vL~~L~~~~-----------------~~~~~~Wl~~~l~~-lp~~~~~~~~~vt~~~k~~F~~~l~~~~~~-r~~~~ 322 (344)
-+.+|..|...- ..-.++|+.+.|.+ .| +++++|-+.|++.+....+. .++|.
T Consensus 236 q~~iL~~lf~~ve~~~i~~pl~~~~~~~n~~~v~~~l~~lL~~~Fp--------~l~~~qi~~fv~glf~~~~d~~~Fk~ 307 (321)
T 1w9c_A 236 HASILAYMFNLVEEGKISTSLNPGNPVNNQIFLQEYVANLLKSAFP--------HLQDAQVKLFVTGLFSLNQDIPAFKE 307 (321)
T ss_dssp HHHHHHHHHHHHHTTCCCSCSCSSSCCCHHHHHHHHHHHHHHHHCT--------TSCHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccccCCCCCcccHHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHccCCHHHHHH
Confidence 999999888211 22467888888764 33 58999999999999987654 69999
Q ss_pred HHHHHHHHHHhc
Q psy12900 323 ALKELSRLYRKH 334 (344)
Q Consensus 323 ~v~~F~~~cr~~ 334 (344)
++|||-...|..
T Consensus 308 ~lrDFLIqiKEf 319 (321)
T 1w9c_A 308 HLRDFLVQIKEF 319 (321)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999998877643
No 8
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.24 E-value=6e-13 Score=144.74 Aligned_cols=289 Identities=10% Similarity=0.109 Sum_probs=173.0
Q ss_pred CCcchHHHHHhh-hhHHHHHHHhc--cchHHHHHHH-------------HHHHHHHHHhhhhh--HHhHHHHHHHHHHHH
Q psy12900 32 CSFLCPFVCVNK-GTIFKTCETYQ--QDARVMEHSS-------------RCLRYAIRCVGKDF--AHLLEPLVKQIVVLY 93 (344)
Q Consensus 32 ~~~p~~~~~~~i-pil~~il~~~~--~d~~vvE~~c-------------~~lr~~~r~~~~~~--~pll~~i~~~l~~~f 93 (344)
..||+.+.+..+ |.+.++++.+. +++++.+++| |+++.++......+ .+..+...+.+...+
T Consensus 761 ~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 840 (1204)
T 3a6p_A 761 FRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERMQRFF 840 (1204)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHHHHHHH
T ss_pred ccCchHHHHHHHhHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCcccccccccCCCcCcHHHHHHHH
Confidence 358999999999 99999999988 8999999999 88887765521111 122245677788888
Q ss_pred hcCCCccHHHHHHHHHHHhcCCcch-HHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCc--
Q psy12900 94 SKHPHSSFLYLGSILVDEYATSHCV-SGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTS-- 170 (344)
Q Consensus 94 ~~~~~~~~L~l~s~lv~~fg~~~~~-~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s-- 170 (344)
...+.+||+++.+.. ..+|++-|. ..+. ..+++.+|..+... ....-+++++++| ..++++||..+..+
T Consensus 841 ~~~re~~y~~lg~~~-~~l~~~fy~~~~l~---~~l~~~~f~~l~~~-~~~~l~~li~~~~---~p~i~~CP~~~~~~~l 912 (1204)
T 3a6p_A 841 STLYENCFHILGKAG-PSMQQDFYTVEDLA---TQLLSSAFVNLNNI-PDYRLRPMLRVFV---KPLVLFCPPEHYEALV 912 (1204)
T ss_dssp HHHHHHHHHHHHHHH-HHHCTTTTTSTTHH---HHHHHHTTSSTTTS-CHHHHHHHHHHTH---HHHHHTCCGGGTTTTH
T ss_pred HHHHHHHHHHHHHHh-hcccccccCCcchH---HHHHHHHHhcchhc-cHHHHHHHHHHHH---HHHHhcCCHHHHHHHH
Confidence 888999999887654 333331111 1122 22344444444443 3335677888877 78999999998887
Q ss_pred -hhhHHHHHHHHHhcc-----cCcchh--------------------------HHHHHHHHHHHhhcCCCCCcc------
Q psy12900 171 -SFISSVMQCGILATH-----LDHREA--------------------------NSTVMKFFYDLIHNNRVLSDK------ 212 (344)
Q Consensus 171 -~~l~~l~~~al~~L~-----~~e~~~--------------------------~~aa~~Fl~~li~~~~~~~~~------ 212 (344)
|.++.+|......|+ +.++++ .|.+++++...+.... +.++
T Consensus 913 ~plL~~lf~~~~~~L~~~W~~i~~~~~~~~~~~~~~~~~~~~E~~~e~llr~lTr~~~~ll~~~~~~~~-~~~~~~~~~~ 991 (1204)
T 3a6p_A 913 SPILGPLFTYLHMRLSQKWQVINQRSLLCGEDEAADENPESQEMLEEQLVRMLTREVMDLITVCCVSKK-GADHSSAPPA 991 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHBC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccccccc
Confidence 888888888777766 444333 2444444443321111 0000
Q ss_pred ------cCccc-cCCcc-------------------------------hhH-H-------HHHHHHHHH-----HHhhHH
Q psy12900 213 ------DGKKK-AVSEE-------------------------------DFD-M-------RHRLMKDIV-----SKHGQA 241 (344)
Q Consensus 213 ------~~~~~-~~~~~-------------------------------~~~-~-------~~~~i~~~l-----~~~G~~ 241 (344)
+.... +.+.+ +.. . ....++.++ .+.|..
T Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l~~~D~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 1071 (1204)
T 3a6p_A 992 DGDDEEMMATEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSGTLLADAVTW 1071 (1204)
T ss_dssp ------------------CBCHHHHHHHSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHHTHHHHHTTSCSSCCCHHHHHH
T ss_pred cccccccccccccccchhhcchHHHHHhcCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 00000 00000 000 0 011222222 255899
Q ss_pred HHHHHHHHch-hccCccchhcHHHHHHHHHHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhchh----
Q psy12900 242 LVSNLLQACV-FSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSES---- 316 (344)
Q Consensus 242 Lv~~ll~~l~-g~~prs~~~~~a~vL~~L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~~---- 316 (344)
++..+++|+. .+.|.++..+++.++..+...++..+. |+.++|.++|+ +++++.++|.+++..+.+
T Consensus 1072 l~~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~~~~~-~~~~vl~~lP~--------i~~~~~~~f~~~l~~~~~~~~~ 1142 (1204)
T 3a6p_A 1072 LFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYL-EIRAVMEQIPE--------IQKDSLDQFDCKLLNPSLQKVA 1142 (1204)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHSTTTCS-THHHHHTTSSS--------CCHHHHHHHHHHSSCC------
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCCCCc-cHHHHHHhCCC--------CCHHHHHHHHHHHhcccccccc
Confidence 9999999999 888999999999999999998887776 99999999976 789999999999865443
Q ss_pred hcHHHHHHHHHHHHHHhccCcc
Q psy12900 317 AYDVGQALKELSRLYRKHMKYN 338 (344)
Q Consensus 317 ~r~~~~~v~~F~~~cr~~~~~~ 338 (344)
.|+-|+++++|...+||..-..
T Consensus 1143 ~k~qr~~~~~ll~~~~g~~~~~ 1164 (1204)
T 3a6p_A 1143 DKRRKDQFKRLIAGCIGKPLGE 1164 (1204)
T ss_dssp ----------------------
T ss_pred hHHHHHHHHHHHHHhcCCcHHH
Confidence 5889999999999999975443
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.75 E-value=0.0017 Score=67.67 Aligned_cols=158 Identities=13% Similarity=0.091 Sum_probs=104.4
Q ss_pred HHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcC----------C----------
Q psy12900 39 VCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKH----------P---------- 97 (344)
Q Consensus 39 ~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~----------~---------- 97 (344)
+++.+ |.+.........+..-+..+++++......+|..+.|++++++..+...+..+ +
T Consensus 523 ~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~ 602 (852)
T 4fdd_A 523 YIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF 602 (852)
T ss_dssp HHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHH
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchH
Confidence 55666 66665555544443444689999999999999999999988877655554422 1
Q ss_pred CccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHH
Q psy12900 98 HSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVM 177 (344)
Q Consensus 98 ~~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~ 177 (344)
..+.+++.+.++..+|. +..+.+.+ ..+....+..++. ..|++-++.+.++..+.+.+|..+.+ .++.++
T Consensus 603 ~~~~l~~l~~l~~~l~~-~~~~~~~~--~~~~~~l~~~l~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~--~l~~~l 672 (852)
T 4fdd_A 603 MIVALDLLSGLAEGLGG-NIEQLVAR--SNILTLMYQCMQD-----KMPEVRQSSFALLGDLTKACFQHVKP--CIADFM 672 (852)
T ss_dssp HHHHHHHHHHHHHHHGG-GGHHHHHT--CCHHHHHHHHTTC-----SSHHHHHHHHHHHHHHHHHCGGGTGG--GHHHHH
T ss_pred HHHHHHHHHHHHHHHhH-hHHHHhcC--CcHHHHHHHHhCC-----CChhHHHHHHHHHHHHHHHhhHHHHH--HHHHHH
Confidence 13446778888888875 44333310 1233334444533 45899999999999999999986543 355566
Q ss_pred HHHHHhcccCcchhHHHHHHHHHHHhhcC
Q psy12900 178 QCGILATHLDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 178 ~~al~~L~~~e~~~~~aa~~Fl~~li~~~ 206 (344)
..-...+...+.+..+.++..+.++....
T Consensus 673 p~l~~~l~~~~~~v~~~a~~alg~i~~~~ 701 (852)
T 4fdd_A 673 PILGTNLNPEFISVCNNATWAIGEISIQM 701 (852)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 66666776666666677777777766543
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.14 E-value=0.077 Score=54.60 Aligned_cols=139 Identities=15% Similarity=0.113 Sum_probs=95.0
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCC----ccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHH
Q psy12900 56 DARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPH----SSFLYLGSILVDEYATSHCVSGLLDMVQAFLPP 131 (344)
Q Consensus 56 d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~----~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~ 131 (344)
..++...+|.++...++.+|.++.|+++.+++.+...++.... ...+...+.++..+|. ...+.+.. +...
T Consensus 569 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~-~~~~~l~~----i~~~ 643 (861)
T 2bpt_A 569 LQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK-GFEKYLET----FSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG-GGHHHHHH----HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh-hHHHHHHH----HHHH
Confidence 3456678999999999999999999999999998888876532 2344556667777764 44434443 4444
Q ss_pred HHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCc--chhHHHHHHHHHHHhhcC
Q psy12900 132 TYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDH--REANSTVMKFFYDLIHNN 206 (344)
Q Consensus 132 ~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e--~~~~~aa~~Fl~~li~~~ 206 (344)
.+..++. +++++-...+.++..+.+..+..+ .|.+..++......+...+ ++...+++..+..++...
T Consensus 644 l~~~l~~-----~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~ 713 (861)
T 2bpt_A 644 LLKALNQ-----VDSPVSITAVGFIADISNSLEEDF--RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713 (861)
T ss_dssp HHHHHHC-----TTSHHHHHHHHHHHHHHHHTGGGG--HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc-----ccHHHHHHHHHHHHHHHHHhchhc--cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence 4455532 567899999999999998887643 2445566665555665433 556667777777777654
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.72 E-value=0.06 Score=55.42 Aligned_cols=157 Identities=8% Similarity=0.068 Sum_probs=97.0
Q ss_pred HHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcC------------------CC
Q psy12900 38 FVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKH------------------PH 98 (344)
Q Consensus 38 ~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~------------------~~ 98 (344)
+++..+ +.+..++.....+..+-+.+++.+...+...+....++++.++..+...+... -.
T Consensus 494 ~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~ 573 (861)
T 2bpt_A 494 NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQ 573 (861)
T ss_dssp GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHH
Confidence 334444 44444444333446777888999999998888877777666655555554432 01
Q ss_pred ccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCC-chHHHHHHHHHHHHHhCcccccCchhhHHHH
Q psy12900 99 SSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHP-DTVDDLFRLCTRFLQRAPIAFLTSSFISSVM 177 (344)
Q Consensus 99 ~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~P-Dvved~f~L~~r~l~~~P~~ll~s~~l~~l~ 177 (344)
...++..+.++...|. ...+.+..++ ...+..++.. ++ ++-++.+..+..+....+..+. +.++.++
T Consensus 574 ~~~~~~l~~l~~~~~~-~~~~~~~~l~----~~l~~~l~~~-----~~~~v~~~~~~~l~~l~~~~~~~~~--~~l~~i~ 641 (861)
T 2bpt_A 574 SNILTVLAAVIRKSPS-SVEPVADMLM----GLFFRLLEKK-----DSAFIEDDVFYAISALAASLGKGFE--KYLETFS 641 (861)
T ss_dssp HHHHHHHHHHHHHCGG-GTGGGHHHHH----HHHHHHHHST-----TGGGTHHHHHHHHHHHHHHHGGGGH--HHHHHHH
T ss_pred HHHHHHHHHHHHHhhh-hhHHHHHHHH----HHHHHHHccC-----CCCcHHHHHHHHHHHHHHHHhhhHH--HHHHHHH
Confidence 2355666777777775 3334444433 3344555552 13 6888888888888877665543 4455666
Q ss_pred HHHHHhcccCcchhHHHHHHHHHHHhhcC
Q psy12900 178 QCGILATHLDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 178 ~~al~~L~~~e~~~~~aa~~Fl~~li~~~ 206 (344)
.....++..++.+....++..+..+....
T Consensus 642 ~~l~~~l~~~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 642 PYLLKALNQVDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 66666666566667777888888777654
No 12
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.95 E-value=1.1 Score=47.08 Aligned_cols=230 Identities=11% Similarity=0.094 Sum_probs=125.7
Q ss_pred hhHHHHHHHhcc-chHHHHHHHHHHHHHHHH-----------hhhhhHHhHHHHHHHHHHHHhcC--------CCccHHH
Q psy12900 44 GTIFKTCETYQQ-DARVMEHSSRCLRYAIRC-----------VGKDFAHLLEPLVKQIVVLYSKH--------PHSSFLY 103 (344)
Q Consensus 44 pil~~il~~~~~-d~~vvE~~c~~lr~~~r~-----------~~~~~~pll~~i~~~l~~~f~~~--------~~~~~L~ 103 (344)
+++..++..... +..|-.++|..++..+.. ....+.|+++++++.+...++.. .....++
T Consensus 496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~ 575 (960)
T 1wa5_C 496 ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMR 575 (960)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHH
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHH
Confidence 556666655443 466789999999987763 23558899999999998888875 2334567
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHh-CcccccCchhhHHHHHHHHH
Q psy12900 104 LGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQR-APIAFLTSSFISSVMQCGIL 182 (344)
Q Consensus 104 l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~-~P~~ll~s~~l~~l~~~al~ 182 (344)
..+.++..+++ ...+.+..++..+....-...++ .++|+.....|+.++.+++. .|..+. +..+.++.....
T Consensus 576 al~~vv~~~~~-~~~p~~~~l~~~L~~~l~~~~~~----~~~~~~~~~~~e~l~~l~~~~~~~~~~--~~~~~~~p~~~~ 648 (960)
T 1wa5_C 576 SIFRVLQTSED-SIQPLFPQLLAQFIEIVTIMAKN----PSNPRFTHYTFESIGAILNYTQRQNLP--LLVDSMMPTFLT 648 (960)
T ss_dssp HHHHHHHHHTT-TTGGGHHHHHHHHHHHHHHHTTS----CCCHHHHHHHHHHHHHHHHTSCGGGHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhC----CCCcHHHHHHHHHHHHHHhcCCcchHH--HHHHHHHHHHHH
Confidence 77888888886 44455555555554433333332 36788888899999999887 333321 122222332222
Q ss_pred hcccCcchhHHHHHHHHHHHhhcCCCCCc------------ccCccccCCcchhHHHHHHHHHHHHHhhHHHH-----HH
Q psy12900 183 ATHLDHREANSTVMKFFYDLIHNNRVLSD------------KDGKKKAVSEEDFDMRHRLMKDIVSKHGQALV-----SN 245 (344)
Q Consensus 183 ~L~~~e~~~~~aa~~Fl~~li~~~~~~~~------------~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv-----~~ 245 (344)
.|.....+-...++..+..++.....-++ +.+. ...+.......+...+...++.++ -.
T Consensus 649 iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~ 724 (960)
T 1wa5_C 649 VFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWE----LKGNIPAVTRLLKSFIKTDSSIFPDLVPVLG 724 (960)
T ss_dssp HHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGC----CTTTHHHHHHHHHHHHHHHGGGCSCSHHHHH
T ss_pred HHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhc----CCCCchhHHHHHHHHHHhChHHHHHHHHHHH
Confidence 33333333444566666666544311100 0111 011223333344555544443222 22
Q ss_pred HHHHchhccCccchhcHHHHHHHHHHhCHHH-HHHHHHHHHh
Q psy12900 246 LLQACVFSLHTYMMADVADVLYELISVDRQV-SNQWLQDTIS 286 (344)
Q Consensus 246 ll~~l~g~~prs~~~~~a~vL~~L~~~~~~~-~~~Wl~~~l~ 286 (344)
++..+.+.- ..-+....+|-.++..+|.. +.+++...+.
T Consensus 725 ~~~~~~~~~--~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~ 764 (960)
T 1wa5_C 725 IFQRLIASK--AYEVHGFDLLEHIMLLIDMNRLRPYIKQIAV 764 (960)
T ss_dssp HHHHHHTCT--TTHHHHHHHHHHHHHHSCHHHHGGGHHHHHH
T ss_pred HHHHHhCCC--cccchHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 233322211 11145667777777878777 6666655544
No 13
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.81 E-value=0.4 Score=49.67 Aligned_cols=141 Identities=7% Similarity=-0.002 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHH
Q psy12900 56 DARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPH---SSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPT 132 (344)
Q Consensus 56 d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~---~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~ 132 (344)
+.+|.+.++.+++.+.+.++.++.++++.++..+...+..... ....|..+.++..+|. ...+.+.. +....
T Consensus 642 ~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~~~----il~~L 716 (852)
T 4fdd_A 642 MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQPYIPM----VLHQL 716 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-GGGGGTHH----HHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH-hHHHHHHH----HHHHH
Confidence 4788999999999999999999999999998888877744321 2345667777777775 34444443 44444
Q ss_pred HHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcc-cCcchhHHHHHHHHHHHhhcC
Q psy12900 133 YAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATH-LDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 133 ~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~-~~e~~~~~aa~~Fl~~li~~~ 206 (344)
+.++++. ..+..+.+.....+.|+.+++|..+- |.++.++..-..+|. ..+.+-..++++-+..++...
T Consensus 717 ~~~l~~~---~~~~~~~~~a~~~igrl~~~~~~~~~--~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~ 786 (852)
T 4fdd_A 717 VEIINRP---NTPKTLLENTAITIGRLGYVCPQEVA--PMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVN 786 (852)
T ss_dssp HHHHTCS---SCCHHHHHHHHHHHHHHHHHCHHHHG--GGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCC---CCCchHHHHHHHHHHHHHHhCHHHhC--ccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhC
Confidence 5666553 23456899999999999999999653 446666665555664 455666778888888888774
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.70 E-value=0.52 Score=48.43 Aligned_cols=119 Identities=11% Similarity=0.106 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHH
Q psy12900 57 ARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHS----SFLYLGSILVDEYATSHCVSGLLDMVQAFLPPT 132 (344)
Q Consensus 57 ~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~----~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~ 132 (344)
..+-+.+++++...+...+..+.|+++.++..+...+...... ..+++.+.++...|. ...+. +..+....
T Consensus 622 ~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~----~~~i~~~l 696 (876)
T 1qgr_A 622 GGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQS-NIIPF----CDEVMQLL 696 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGG-GGHHH----HHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH-hhhhh----HHHHHHHH
Confidence 3678899999999999999999999999888888877654222 345566666666664 33333 34444445
Q ss_pred HHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcc
Q psy12900 133 YAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATH 185 (344)
Q Consensus 133 ~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~ 185 (344)
+..+++. +.++++-...+..+.++....+..+.+ .++.++.....++.
T Consensus 697 ~~~l~~~---~~~~~~~~~~~~~l~~i~~~~g~~~~~--~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 697 LENLGNE---NVHRSVKPQILSVFGDIALAIGGEFKK--YLEVVLNTLQQASQ 744 (876)
T ss_dssp HHHHTCT---TSCGGGHHHHHHHHHHHHHHHGGGGGG--GHHHHHHHHHHHHT
T ss_pred HHHhCCc---cccHHhhHHHHHHHHHHHHHhchhHHH--HHHHHHHHHHHHHh
Confidence 5566542 245779999999999999888876533 45555554444443
No 15
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.61 E-value=2.7 Score=43.95 Aligned_cols=159 Identities=13% Similarity=0.147 Sum_probs=90.3
Q ss_pred hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCc--cHHHH---HHHHHHHhcCCcch
Q psy12900 44 GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHS--SFLYL---GSILVDEYATSHCV 118 (344)
Q Consensus 44 pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~--~~L~l---~s~lv~~fg~~~~~ 118 (344)
+++..+++.. ++.+|..++|..+++..+.++..+.|+++++++.+.......... .-..+ .+.++...+ .
T Consensus 529 ~vl~~l~~~l-~~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~----~ 603 (963)
T 2x19_B 529 SVLPLVLHAL-GNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ----V 603 (963)
T ss_dssp TTHHHHHHHT-TCGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC----H
T ss_pred HHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC----H
Confidence 6666666554 348899999999999999999999999999999888877753222 22222 233332222 1
Q ss_pred HHHHHHHHHhHHHHHHhhcCCCCCCCCCchHH---HHHHHHHHHHHhCccccc-----------------Cch---hhHH
Q psy12900 119 SGLLDMVQAFLPPTYAILQEEDGLKNHPDTVD---DLFRLCTRFLQRAPIAFL-----------------TSS---FISS 175 (344)
Q Consensus 119 ~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvve---d~f~L~~r~l~~~P~~ll-----------------~s~---~l~~ 175 (344)
+.....+..+.......+++...-..+||... .+++.+..+++......- ..| .+..
T Consensus 604 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (963)
T 2x19_B 604 EEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHH
Confidence 23333444444444333322000012444443 556666666666443210 111 3344
Q ss_pred HHHHHHHhcc--cCcchhHHHHHHHHHHHhhcCC
Q psy12900 176 VMQCGILATH--LDHREANSTVMKFFYDLIHNNR 207 (344)
Q Consensus 176 l~~~al~~L~--~~e~~~~~aa~~Fl~~li~~~~ 207 (344)
++......+. ..+.+....++.++..++...+
T Consensus 684 ~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 684 VFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 4444333332 3456778889999999886544
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.55 E-value=0.89 Score=46.66 Aligned_cols=159 Identities=11% Similarity=0.047 Sum_probs=92.4
Q ss_pred hHHHHHHHhccchHHHHHHHHHHHHHHHHhh--------------hhhHHhHHHHHHHHHHHHhcCCC------ccHHHH
Q psy12900 45 TIFKTCETYQQDARVMEHSSRCLRYAIRCVG--------------KDFAHLLEPLVKQIVVLYSKHPH------SSFLYL 104 (344)
Q Consensus 45 il~~il~~~~~d~~vvE~~c~~lr~~~r~~~--------------~~~~pll~~i~~~l~~~f~~~~~------~~~L~l 104 (344)
++..++.....+.+|-+++|.++......++ ..+.|+++.++..+...+..... ...+..
T Consensus 452 ~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~ 531 (876)
T 1qgr_A 452 LLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531 (876)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHH
Confidence 3334444444457788889999999988876 23778899999988888775421 234566
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhHHHHHHhh--cCCCCCCCC----CchHHHHHHHHHHHHHhCc-ccccCchhhHHHH
Q psy12900 105 GSILVDEYATSHCVSGLLDMVQAFLPPTYAIL--QEEDGLKNH----PDTVDDLFRLCTRFLQRAP-IAFLTSSFISSVM 177 (344)
Q Consensus 105 ~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l--~~~~~~~~~----PDvved~f~L~~r~l~~~P-~~ll~s~~l~~l~ 177 (344)
.+.++...|. ...+.+..++..+....-..+ ++....+++ ||+-...+..+..+++..+ ..+. |.++.++
T Consensus 532 l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~l~ 608 (876)
T 1qgr_A 532 LMEIVKNSAK-DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL--QISDVVM 608 (876)
T ss_dssp HHHHHHTCCS-TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH--TTHHHHH
T ss_pred HHHHHHHCch-hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh--HHHHHHH
Confidence 7777877775 444444444444433322222 111001223 4555667788888887777 4442 3455555
Q ss_pred HHHHHhcccCc--chhHHHHHHHHHHHhhcC
Q psy12900 178 QCGILATHLDH--REANSTVMKFFYDLIHNN 206 (344)
Q Consensus 178 ~~al~~L~~~e--~~~~~aa~~Fl~~li~~~ 206 (344)
...+..+.... ......++..+..++...
T Consensus 609 ~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~ 639 (876)
T 1qgr_A 609 ASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639 (876)
T ss_dssp HHHHHHC-----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence 55555554432 244556777777777643
No 17
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.48 E-value=0.81 Score=48.12 Aligned_cols=51 Identities=10% Similarity=0.069 Sum_probs=40.8
Q ss_pred hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcC
Q psy12900 44 GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKH 96 (344)
Q Consensus 44 pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~ 96 (344)
+++..++... |.+|..++|..++...+.++..+.|+++++++.+...+...
T Consensus 546 ~vl~~l~~~l--~~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 546 PAINLLVRGL--NSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp HHHHHHHHHH--HSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 4444444433 27889999999999999999999999999999998888863
No 18
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.84 E-value=1.7 Score=37.39 Aligned_cols=150 Identities=12% Similarity=0.167 Sum_probs=97.3
Q ss_pred Hhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcchH
Q psy12900 41 VNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVS 119 (344)
Q Consensus 41 ~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~~~~~~ 119 (344)
.++ +.+...+.+ ..+..|.+.+|.++....+.++..+.++++.++..+...+.... ...=..+...+..+.. ..
T Consensus 55 ~~i~~~L~~~l~k-d~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~-~~vr~~a~~aL~~~~~-~~-- 129 (242)
T 2qk2_A 55 GALVSALKKVITK-DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK-PNVVTALREAIDAIYA-ST-- 129 (242)
T ss_dssp HHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHT-TS--
T ss_pred HHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH-cC--
Confidence 455 666665532 36789999999999999999999999999999988888877533 3333344444444443 11
Q ss_pred HHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhC-cccccCchhhHHHHHHHHHhcccCcchhHHHHHHH
Q psy12900 120 GLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRA-PIAFLTSSFISSVMQCGILATHLDHREANSTVMKF 198 (344)
Q Consensus 120 ~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~-P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~F 198 (344)
.+ ..+....+..+++ .+|.+=.....++.+++.++ |..+ ..+.++.++.....++.-.+.+.-.++...
T Consensus 130 ~~----~~ll~~l~~~l~~-----~~~~vr~~~l~~l~~~l~~~~~~~~-~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~ 199 (242)
T 2qk2_A 130 SL----EAQQESIVESLSN-----KNPSVKSETALFIARALTRTQPTAL-NKKLLKLLTTSLVKTLNEPDPTVRDSSAEA 199 (242)
T ss_dssp CH----HHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred CH----HHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 12 2334444555544 36889999999999988887 5532 234566667766667665555544555555
Q ss_pred HHHHhhc
Q psy12900 199 FYDLIHN 205 (344)
Q Consensus 199 l~~li~~ 205 (344)
+..+...
T Consensus 200 l~~l~~~ 206 (242)
T 2qk2_A 200 LGTLIKL 206 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 19
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=94.77 E-value=2.1 Score=39.15 Aligned_cols=177 Identities=10% Similarity=0.121 Sum_probs=101.7
Q ss_pred cchhhHHHHHHHHhhhccCccCCCCcchHHHHHhh--hhHHHHHHHhccc-hHHH-HHHHHHHHHHHHHhhhhhHHhHHH
Q psy12900 9 VSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVNK--GTIFKTCETYQQD-ARVM-EHSSRCLRYAIRCVGKDFAHLLEP 84 (344)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i--pil~~il~~~~~d-~~vv-E~~c~~lr~~~r~~~~~~~pll~~ 84 (344)
+++--|.|+.+|.+.. +. ...+.++. |+++.++.-|.++ ++.= -.+-.++..++..++..+.|.+|.
T Consensus 45 vKkeiLkLiet~i~~~--------~d-~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~ 115 (321)
T 1w9c_A 45 VKRETLKLISGWVSRS--------ND-PQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQ 115 (321)
T ss_dssp HHHHHHHHHHHHHTTC--------SC-HHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3444555666665431 11 23455555 9999999999865 2221 124456667777888889999999
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHhcC-CcchHHHHHHHHHhHHHHHHhhcCCC-------------CC-CCCCchH
Q psy12900 85 LVKQIVVLYSKHPHSSFLYLGSILVDEYAT-SHCVSGLLDMVQAFLPPTYAILQEED-------------GL-KNHPDTV 149 (344)
Q Consensus 85 i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~-~~~~~~l~~~~~~l~~~~~~~l~~~~-------------~~-~~~PDvv 149 (344)
|++.+-.+ +...+-..|-+ |+++..+-.++..+..+.|..+-+.+ ++ ..++|+.
T Consensus 116 Il~~VFe~-----------TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~ 184 (321)
T 1w9c_A 116 IFDAVFEC-----------TLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVA 184 (321)
T ss_dssp HHHHHHHH-----------HHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHH-----------HHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHH
Confidence 98766442 33333345656 77788888888777776555443220 12 3567788
Q ss_pred HHHHHHHHHHHHhCcc--cccCc---hhhHHHHHHHHHhcc-cCcchhHHHHHHHHHHHhhc
Q psy12900 150 DDLFRLCTRFLQRAPI--AFLTS---SFISSVMQCGILATH-LDHREANSTVMKFFYDLIHN 205 (344)
Q Consensus 150 ed~f~L~~r~l~~~P~--~ll~s---~~l~~l~~~al~~L~-~~e~~~~~aa~~Fl~~li~~ 205 (344)
|.-.+.+..+++.... .+... ..+..+++-....++ -.|...-+.-+..|..++..
T Consensus 185 e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ 246 (321)
T 1w9c_A 185 DTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNL 246 (321)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHH
Confidence 8777777777777642 01000 112233333333333 34555555555555555543
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.75 E-value=4.4 Score=37.75 Aligned_cols=139 Identities=6% Similarity=0.050 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHHHHh-hhhhHHhHHHHHHHHHHHHhcCC-CccHHHHHHHHHHH----hcCCcch-HHHHHHHHHh
Q psy12900 56 DARVMEHSSRCLRYAIRCV-GKDFAHLLEPLVKQIVVLYSKHP-HSSFLYLGSILVDE----YATSHCV-SGLLDMVQAF 128 (344)
Q Consensus 56 d~~vvE~~c~~lr~~~r~~-~~~~~pll~~i~~~l~~~f~~~~-~~~~L~l~s~lv~~----fg~~~~~-~~l~~~~~~l 128 (344)
|..+.+.+..+++...... +..+.+.++.++..+........ .+..-..+-.++.. +.+ ... ..+... +
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~~---l 218 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA-NFDKESERHF---I 218 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH-HHTSHHHHHH---H
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHH---H
Confidence 6788899999999988876 55567788888888888776542 33222222222222 211 100 011111 1
Q ss_pred HHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhH-HHHHHHHHhcccCcchhHHHHHHHHHHHhhc
Q psy12900 129 LPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFIS-SVMQCGILATHLDHREANSTVMKFFYDLIHN 205 (344)
Q Consensus 129 ~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~-~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~ 205 (344)
.......+ -+.++++-...++.+..+..++|..+- +.+. .++...+.++.-.+.+....++.||..+...
T Consensus 219 ~~~l~~~~-----~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 219 MQVVCEAT-----QCPDTRVRVAALQNLVKIMSLYYQYME--TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHT-----TCSSHHHHHHHHHHHHHHHHHCGGGCT--TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 11111222 235688999999999999999998653 2333 5555555566666667788999999998865
No 21
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=92.50 E-value=7 Score=41.59 Aligned_cols=143 Identities=12% Similarity=0.100 Sum_probs=90.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhh-hHHhHHHHHHHHHHHHhcCCC----ccHHHHHHHHHHHhcC--CcchHHHHHHHHH
Q psy12900 55 QDARVMEHSSRCLRYAIRCVGKD-FAHLLEPLVKQIVVLYSKHPH----SSFLYLGSILVDEYAT--SHCVSGLLDMVQA 127 (344)
Q Consensus 55 ~d~~vvE~~c~~lr~~~r~~~~~-~~pll~~i~~~l~~~f~~~~~----~~~L~l~s~lv~~fg~--~~~~~~l~~~~~~ 127 (344)
.+.+..|++|=+++.+...+... ..++++.++..+...-...+. .-+-+.+..++..|.+ ...... +..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~----L~~ 540 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF----LRT 540 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH----HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH----HHH
Confidence 57899999999999988776654 678888888887765543111 1111233344444443 222222 333
Q ss_pred hHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccC------chhhHHHHHHHHHhcccCcchhHHHHHHHHHH
Q psy12900 128 FLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLT------SSFISSVMQCGILATHLDHREANSTVMKFFYD 201 (344)
Q Consensus 128 l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~------s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~ 201 (344)
+.+..+..+. +++|.+.+.-..-+.++.+.|...+.. +|.++.+++.-..++..-+......+.+-+..
T Consensus 541 vl~~L~~~l~-----~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 541 VILKLFEFMH-----ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHTT-----CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-----cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333444332 356888888888888888888887753 46777777755555555566667777777777
Q ss_pred HhhcC
Q psy12900 202 LIHNN 206 (344)
Q Consensus 202 li~~~ 206 (344)
++...
T Consensus 616 vi~~~ 620 (1023)
T 4hat_C 616 IISEE 620 (1023)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 77764
No 22
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.27 E-value=6.3 Score=42.41 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhh-hHHhHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHhcC-C-cchHHHHHHHHHhHH
Q psy12900 57 ARVMEHSSRCLRYAIRCVGKD-FAHLLEPLVKQIVVLYSKHPH---SSFLYLGSILVDEYAT-S-HCVSGLLDMVQAFLP 130 (344)
Q Consensus 57 ~~vvE~~c~~lr~~~r~~~~~-~~pll~~i~~~l~~~f~~~~~---~~~L~l~s~lv~~fg~-~-~~~~~l~~~~~~l~~ 130 (344)
.++.+.++..+...+...+.. +.|+++.++..+...++.... ...+.+.+.++..+|. . .....+..-+..+..
T Consensus 491 ~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~ 570 (1230)
T 1u6g_C 491 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFT 570 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHH
Confidence 478888899988888776655 777777777777777665332 2245667777777774 1 111122233334444
Q ss_pred HHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhh
Q psy12900 131 PTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIH 204 (344)
Q Consensus 131 ~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~ 204 (344)
..+..+... +.++++-+.....+..+.++.+..+. +.++.++..-...+... ..-..+++.+..+..
T Consensus 571 ~ll~~l~~~---d~~~~vr~~a~~~lg~L~~~~g~~~~--~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~ 637 (1230)
T 1u6g_C 571 CTIKRLKAA---DIDQEVKERAISCMGQIICNLGDNLG--SDLPNTLQIFLERLKNE--ITRLTTVKALTLIAG 637 (1230)
T ss_dssp HHHHHHSCS---SSCHHHHHHHHHHHHHHHHHTGGGCC--THHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTT
T ss_pred HHHHHHhcc---CCCHHHHHHHHHHHHHHHHHhCchhh--hhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHh
Confidence 455556432 46778888888999999998887753 45566666544454422 234455666666654
No 23
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.04 E-value=2.8 Score=45.18 Aligned_cols=164 Identities=10% Similarity=0.025 Sum_probs=96.5
Q ss_pred HHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhh-------hhHHhHHHHHHHHHHHHhcC-CC----ccHHHH
Q psy12900 38 FVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGK-------DFAHLLEPLVKQIVVLYSKH-PH----SSFLYL 104 (344)
Q Consensus 38 ~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~-------~~~pll~~i~~~l~~~f~~~-~~----~~~L~l 104 (344)
+++..+ |.+...+.. .+.+|...+..++...++.++. .+.|+++.++..+...+... .. ...++.
T Consensus 515 ~~l~~llp~L~~~l~d--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~ 592 (1230)
T 1u6g_C 515 PHVQALVPPVVACVGD--PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISC 592 (1230)
T ss_dssp HHHTTTHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 344455 444433321 3456666777888888888776 67889999998888887532 21 234577
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHhH--------------------------------HHHHHhhcCCCCCCCCCchHHHH
Q psy12900 105 GSILVDEYATSHCVSGLLDMVQAFL--------------------------------PPTYAILQEEDGLKNHPDTVDDL 152 (344)
Q Consensus 105 ~s~lv~~fg~~~~~~~l~~~~~~l~--------------------------------~~~~~~l~~~~~~~~~PDvved~ 152 (344)
.+.++...|+ ...+.+..++..+. ..++..+.+. --++++++-+..
T Consensus 593 lg~L~~~~g~-~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~-l~~~~~~~r~~a 670 (1230)
T 1u6g_C 593 MGQIICNLGD-NLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASF-LRKNQRALKLGT 670 (1230)
T ss_dssp HHHHHHHTGG-GCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHH-TTSCCHHHHHHH
T ss_pred HHHHHHHhCc-hhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH-HHhCCHHHHHHH
Confidence 8888888886 21112222221111 1111111110 113567788899
Q ss_pred HHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcC
Q psy12900 153 FRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNN 206 (344)
Q Consensus 153 f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~ 206 (344)
...+.++++.+|..+ ..+.+..++...+..+.-.+.+....++++|..++...
T Consensus 671 ~~al~~l~~~~~~~~-~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 671 LSALDILIKNYSDSL-TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp HHHHHHHHHHCCTTC-CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhcccccC-CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence 999999999998765 33334444432222223345566889999999998654
No 24
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=91.70 E-value=4.9 Score=42.54 Aligned_cols=160 Identities=13% Similarity=0.018 Sum_probs=87.4
Q ss_pred hhHHHHHH--Hhc-cchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCc---------------------
Q psy12900 44 GTIFKTCE--TYQ-QDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHS--------------------- 99 (344)
Q Consensus 44 pil~~il~--~~~-~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~--------------------- 99 (344)
|++..++. -.. .+.+|..++|..+++..+.++.++.|.++.+++.+...+.....+
T Consensus 535 ~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (980)
T 3ibv_A 535 ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFN 614 (980)
T ss_dssp HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHH
T ss_pred HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCch
Confidence 66666665 222 346899999999999999999999999999998887666532211
Q ss_pred cHH---HHHHHHHHHhcC--CcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCc--hHHHHHHHHHHHHHhCccccc-Cch
Q psy12900 100 SFL---YLGSILVDEYAT--SHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPD--TVDDLFRLCTRFLQRAPIAFL-TSS 171 (344)
Q Consensus 100 ~~L---~l~s~lv~~fg~--~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PD--vved~f~L~~r~l~~~P~~ll-~s~ 171 (344)
+-+ ..++.++..-+. +.-...+..++.-+....-..++.. ..+..+ .+.+.+.-+.++.+..+..=. +.|
T Consensus 615 ~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~--~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p 692 (980)
T 3ibv_A 615 SQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSD--LSALENIISVYCSLMAIGNFAKGFPARGSEEVA 692 (980)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTS--CC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCS
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCccHHHHHHHHHHHHHHHhccCCcccCCCCc
Confidence 233 345667776654 2222234444443333333444332 111111 344555555666666543211 112
Q ss_pred ---hhHHHHHHHHHhcc-cCcchhHH-HHHHHHHHHhhc
Q psy12900 172 ---FISSVMQCGILATH-LDHREANS-TVMKFFYDLIHN 205 (344)
Q Consensus 172 ---~l~~l~~~al~~L~-~~e~~~~~-aa~~Fl~~li~~ 205 (344)
.+..+.+..+.++. ..+...+| +++.++..++..
T Consensus 693 ~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~ 731 (980)
T 3ibv_A 693 WLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINV 731 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 34455555555554 23334444 445555555544
No 25
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=88.53 E-value=2.6 Score=44.35 Aligned_cols=157 Identities=10% Similarity=0.083 Sum_probs=86.2
Q ss_pred CCCcchHHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHH--HHHhcCCCccHHHHHHH
Q psy12900 31 RCSFLCPFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIV--VLYSKHPHSSFLYLGSI 107 (344)
Q Consensus 31 ~~~~p~~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~--~~f~~~~~~~~L~l~s~ 107 (344)
..+.++..+.+.+ |++..+++.+..+ ..+.+..++...+... ..+.+.+..++..+. ..++..+ ++-.+.-
T Consensus 630 ~~~~~~~~~~~~~~p~~~~iL~~~~~~--~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~ 703 (960)
T 1wa5_C 630 TQRQNLPLLVDSMMPTFLTVFSEDIQE--FIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG---NIPAVTR 703 (960)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHTTCTT--THHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT---THHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhHh--hHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC---CchhHHH
Confidence 3445677777788 8888888876543 4444444444444333 334455555555555 5555432 3322333
Q ss_pred HHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccC
Q psy12900 108 LVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLD 187 (344)
Q Consensus 108 lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~ 187 (344)
++..|-. ...+.+.+ ++.+.+....++... .+| +..|.++..++..+|... -.|.++.++...+..+...
T Consensus 704 ~L~~~~~-~~~~~~~~-~~~~l~~~~~~~~~~-----~~~--~~a~~ll~~i~~~~~~~~-~~~yl~~i~~~l~~~l~~~ 773 (960)
T 1wa5_C 704 LLKSFIK-TDSSIFPD-LVPVLGIFQRLIASK-----AYE--VHGFDLLEHIMLLIDMNR-LRPYIKQIAVLLLQRLQNS 773 (960)
T ss_dssp HHHHHHH-HHGGGCSC-SHHHHHHHHHHHTCT-----TTH--HHHHHHHHHHHHHSCHHH-HGGGHHHHHHHHHHGGGSS
T ss_pred HHHHHHH-hChHHHHH-HHHHHHHHHHHhCCC-----ccc--chHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHHHhhC
Confidence 3443321 00001100 111111111223231 245 889999999999999872 2467888888888888877
Q ss_pred cchhHH-HHHHHHHHHh
Q psy12900 188 HREANS-TVMKFFYDLI 203 (344)
Q Consensus 188 e~~~~~-aa~~Fl~~li 203 (344)
+.+..+ +.+.|+..+.
T Consensus 774 ~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 774 KTERYVKKLTVFFGLIS 790 (960)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHH
Confidence 666554 7777776655
No 26
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=87.73 E-value=4.9 Score=43.56 Aligned_cols=121 Identities=12% Similarity=0.064 Sum_probs=74.7
Q ss_pred CCCchHHHHHHHHHHHHHhCccccc------CchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccc
Q psy12900 144 NHPDTVDDLFRLCTRFLQRAPIAFL------TSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKK 217 (344)
Q Consensus 144 ~~PDvved~f~L~~r~l~~~P~~ll------~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~ 217 (344)
++.|..+.+.+++..+....-.++. ..+.+..++++.+.+...++.+....++.||..++.......
T Consensus 314 ~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~------- 386 (1204)
T 3a6p_A 314 KHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSR------- 386 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccc-------
Confidence 4567777778787777654222211 224567777777777777777888889999999987643111
Q ss_pred cCCcchhHHHHHHHHHHHHHhhHHHHHHH---HHHchhccCcc-------------------------chhcHHHHHHHH
Q psy12900 218 AVSEEDFDMRHRLMKDIVSKHGQALVSNL---LQACVFSLHTY-------------------------MMADVADVLYEL 269 (344)
Q Consensus 218 ~~~~~~~~~~~~~i~~~l~~~G~~Lv~~l---l~~l~g~~prs-------------------------~~~~~a~vL~~L 269 (344)
++.+.++-+.|+..+ +..+ ..|.. ...+++|+|..+
T Consensus 387 --------------~~~~~~~l~~Ll~vl~~~l~k~--~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i 450 (1204)
T 3a6p_A 387 --------------DPLLLAIIPKYLRASMTNLVKM--GFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLA 450 (1204)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHSCC--CCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHHHHHHHHHHHh--cCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 011223334555555 3333 23431 112377899999
Q ss_pred HHhCHHHHH----HHHHHHHhh
Q psy12900 270 ISVDRQVSN----QWLQDTISQ 287 (344)
Q Consensus 270 ~~~~~~~~~----~Wl~~~l~~ 287 (344)
...+|...- +|+.+.+.+
T Consensus 451 ~~v~p~~~l~~v~~~l~~~l~~ 472 (1204)
T 3a6p_A 451 CRLDPKTSFQMAGEWLKYQLST 472 (1204)
T ss_dssp HHHCHHHHHHHHHHHHHHHHTC
T ss_pred HhcCHHHHHHHHHHHHHHHHhh
Confidence 999987754 888777764
No 27
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.49 E-value=11 Score=39.85 Aligned_cols=70 Identities=11% Similarity=0.154 Sum_probs=49.5
Q ss_pred hhHHHHHHHhcc-chHHHHHHHHHHHHHHHHhhhhhH--------HhHHHHHHHHHHHHhcCCCccHH---HHHHHHHHH
Q psy12900 44 GTIFKTCETYQQ-DARVMEHSSRCLRYAIRCVGKDFA--------HLLEPLVKQIVVLYSKHPHSSFL---YLGSILVDE 111 (344)
Q Consensus 44 pil~~il~~~~~-d~~vvE~~c~~lr~~~r~~~~~~~--------pll~~i~~~l~~~f~~~~~~~~L---~l~s~lv~~ 111 (344)
+++..+++.... +.+|-.++|..+.+....++.++. |+++++++.+...+...+..... ..++.++..
T Consensus 540 ~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~ 619 (1049)
T 3m1i_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1049)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc
Confidence 666666665443 589999999999999999888776 99999999888777764432222 334445544
Q ss_pred hc
Q psy12900 112 YA 113 (344)
Q Consensus 112 fg 113 (344)
.|
T Consensus 620 ~~ 621 (1049)
T 3m1i_C 620 ER 621 (1049)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 28
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=85.42 E-value=33 Score=36.64 Aligned_cols=142 Identities=10% Similarity=0.077 Sum_probs=87.7
Q ss_pred cchHHHHHHHHHHHHHHHHhhhh-hHHhHHHHHHHHHHHHhcCC----CccHHHHHHHHHHHhcC--CcchHHHHHHHHH
Q psy12900 55 QDARVMEHSSRCLRYAIRCVGKD-FAHLLEPLVKQIVVLYSKHP----HSSFLYLGSILVDEYAT--SHCVSGLLDMVQA 127 (344)
Q Consensus 55 ~d~~vvE~~c~~lr~~~r~~~~~-~~pll~~i~~~l~~~f~~~~----~~~~L~l~s~lv~~fg~--~~~~~~l~~~~~~ 127 (344)
.+....|++|=.++.+..++... -.+++|.+++.|...-+..+ -+-+-..+..++..|.+ ......+ +.
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L----~~ 566 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL----KT 566 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH----HH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH----HH
Confidence 45778999998888776666543 44789999988887654432 11222222335666655 2222233 33
Q ss_pred hHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccC------chhhHHHHHHHHHhcccCcchhHHHHHHHHHH
Q psy12900 128 FLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLT------SSFISSVMQCGILATHLDHREANSTVMKFFYD 201 (344)
Q Consensus 128 l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~------s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~ 201 (344)
+....+..+. +.+|++.+.-.+-+..+.++|+..|+. .|.+..+++.-..+...-.++.+....+-+..
T Consensus 567 vl~~L~~~m~-----~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~ 641 (1073)
T 3gjx_A 567 VVNKLFEFMH-----ETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGY 641 (1073)
T ss_dssp HHHHHHHHTT-----CCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444443 357889888888888999999998864 25667776644444444455556666666666
Q ss_pred Hhhc
Q psy12900 202 LIHN 205 (344)
Q Consensus 202 li~~ 205 (344)
+++.
T Consensus 642 vi~~ 645 (1073)
T 3gjx_A 642 MIGA 645 (1073)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 6654
No 29
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=85.21 E-value=16 Score=31.68 Aligned_cols=142 Identities=8% Similarity=0.057 Sum_probs=88.5
Q ss_pred ccchHHHHHHHHHHHHHHHHhh-hhhH-HhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC---Ccch-HHHHHHHHH
Q psy12900 54 QQDARVMEHSSRCLRYAIRCVG-KDFA-HLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYAT---SHCV-SGLLDMVQA 127 (344)
Q Consensus 54 ~~d~~vvE~~c~~lr~~~r~~~-~~~~-pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~---~~~~-~~l~~~~~~ 127 (344)
..+..|++.+|+++......++ ..+. ++...++..+...+.... +..-.-+...++.+-. +... ..+..+++.
T Consensus 72 D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~ 150 (249)
T 2qk1_A 72 DANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKD 150 (249)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHH
Confidence 4457788999999999999898 7788 888888777777776533 3332222222222221 1100 013333333
Q ss_pred hHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCccc---ccCchhh-HHHHHHHHHhcccCcchhHHHHHHHHHHHh
Q psy12900 128 FLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA---FLTSSFI-SSVMQCGILATHLDHREANSTVMKFFYDLI 203 (344)
Q Consensus 128 l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~---ll~s~~l-~~l~~~al~~L~~~e~~~~~aa~~Fl~~li 203 (344)
.+..|++ .+|.+=+..+.++.+++...+.. |. +.+ ..++.....++.-.+.+.-.++...+..+.
T Consensus 151 ----l~~~l~~-----k~~~vk~~al~~l~~~~~~~~~~~~~l~--~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 151 ----ILEHMKH-----KTPQIRMECTQLFNASMKEEKDGYSTLQ--RYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp ----HHHHTTC-----SSHHHHHHHHHHHHHHHHHCCSCSHHHH--HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred ----HHHHHcC-----CChHHHHHHHHHHHHHHHHcCCcchhHH--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4455554 26889999999999999998852 21 234 455555555666666666667777777776
Q ss_pred hcCC
Q psy12900 204 HNNR 207 (344)
Q Consensus 204 ~~~~ 207 (344)
..-+
T Consensus 220 ~~vG 223 (249)
T 2qk1_A 220 KIFG 223 (249)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 6544
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=73.10 E-value=45 Score=28.73 Aligned_cols=119 Identities=8% Similarity=0.019 Sum_probs=68.3
Q ss_pred hHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCC
Q psy12900 128 FLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNR 207 (344)
Q Consensus 128 l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~ 207 (344)
+....+..+.. ..+.+.+.....+..++..++.... .+.++.++.--..+|....+..-..++.|+..++....
T Consensus 105 llp~ll~~l~d-----kk~~V~~aa~~al~~i~~~~~~~~~-~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 105 VFTPLLDRTKE-----KKPSVIEAIRKALLTICKYYDPLAS-SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHGGGC-----CCHHHHHHHHHHHHHHHHHSCTTCT-TCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHcccccc-CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 33444555544 2255777777777778777644221 11234444444557777777778889999999998754
Q ss_pred CCCcccCccccCCcchhHHHHHHHHHHHHHhh-HHHHHHHHHHchhccCccchhcHHHHHHHHHHhCHH
Q psy12900 208 VLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHG-QALVSNLLQACVFSLHTYMMADVADVLYELISVDRQ 275 (344)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G-~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~~~~ 275 (344)
..+ ..+..+- +.++..+..++ ++.-+...+...+.|-++.+..++
T Consensus 179 ~~~----------------------~~l~~~l~~~iip~l~~~l-~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 179 DGY----------------------STLQRYLKDEVVPIVIQIV-NDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp SCS----------------------HHHHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred Ccc----------------------hhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhCH
Confidence 332 1112232 34444444444 355555555666777777766554
No 31
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=63.47 E-value=73 Score=27.51 Aligned_cols=64 Identities=8% Similarity=0.151 Sum_probs=43.4
Q ss_pred CCCchHHHHHHHHHHHHHhCcccccC-chhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCC
Q psy12900 144 NHPDTVDDLFRLCTRFLQRAPIAFLT-SSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNR 207 (344)
Q Consensus 144 ~~PDvved~f~L~~r~l~~~P~~ll~-s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~ 207 (344)
-+|-+..+...++.++++.+....++ .+.+..++.....++.-.+.+.=.++.+++..+..+-+
T Consensus 151 Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 151 KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 47889999999999999887654443 34566666665556665555555667778888877754
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=61.20 E-value=1e+02 Score=29.21 Aligned_cols=137 Identities=9% Similarity=0.094 Sum_probs=65.6
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHhHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHhcC--CcchHHHHHHHHHhHH
Q psy12900 55 QDARVMEHSSRCLRYAIRCVGKDFAHLLE--PLVKQIVVLYSKHPHSSFLYLGSILVDEYAT--SHCVSGLLDMVQAFLP 130 (344)
Q Consensus 55 ~d~~vvE~~c~~lr~~~r~~~~~~~pll~--~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~--~~~~~~l~~~~~~l~~ 130 (344)
.+.++.+.++.++.+....... ....+- ..+..++..............+..++..+.. +.... ........
T Consensus 172 ~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~---~~~~~~l~ 247 (528)
T 4b8j_A 172 SSDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF---EQTRPALP 247 (528)
T ss_dssp SCHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH---HHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH---HHHHHHHH
Confidence 5678888888888877643211 111111 1223333333333444444444444444443 21111 11122333
Q ss_pred HHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCccc---ccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhh
Q psy12900 131 PTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA---FLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIH 204 (344)
Q Consensus 131 ~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~---ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~ 204 (344)
....++.. .++++..+....+..+....+.. +.....++.++. .|...+......++..+..+..
T Consensus 248 ~L~~lL~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~----lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 248 ALARLIHS-----NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE----LLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHH----HTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHH----HHcCCChhHHHHHHHHHHHHHc
Confidence 34444543 45778877777776665443321 122223333333 3444555566667777766654
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=58.55 E-value=79 Score=26.27 Aligned_cols=142 Identities=8% Similarity=0.099 Sum_probs=74.9
Q ss_pred hccchHHHHHHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcchHHHHHHHH-HhHH
Q psy12900 53 YQQDARVMEHSSRCLRYAIRCVGKDFAHLLE-PLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQ-AFLP 130 (344)
Q Consensus 53 ~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~-~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~~~~~~~l~~~~~-~l~~ 130 (344)
...|.++...+|..+++.+..-......++. ..++.++....... +....-+..++..... .....-..+++ ....
T Consensus 22 ~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~ 99 (252)
T 4db8_A 22 NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIAS-GGNEQIQAVIDAGALP 99 (252)
T ss_dssp HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTT-SCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhc-CCHHHHHHHHHcCCHH
Confidence 4578889999999998776652222222221 13444454444332 4444455555555543 11111122221 1344
Q ss_pred HHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCccc---ccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhc
Q psy12900 131 PTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA---FLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHN 205 (344)
Q Consensus 131 ~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~---ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~ 205 (344)
....++++ ++|++.+.-...+..+....+.. +.....++.+++ .|...+.+....++..+..+...
T Consensus 100 ~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 100 ALVQLLSS-----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ----LLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHGGGC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH----GGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHcC-----CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHH----HHhCCCHHHHHHHHHHHHHHHcC
Confidence 45566655 35778887777777775444332 222233344333 44555666677777777777643
No 34
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=58.40 E-value=1.1e+02 Score=27.87 Aligned_cols=144 Identities=10% Similarity=-0.014 Sum_probs=84.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHhcCCCccH----HHHHHHHHHH------hcCC--------
Q psy12900 55 QDARVMEHSSRCLRYAIRCVGKDFAHLLE-PLVKQIVVLYSKHPHSSF----LYLGSILVDE------YATS-------- 115 (344)
Q Consensus 55 ~d~~vvE~~c~~lr~~~r~~~~~~~pll~-~i~~~l~~~f~~~~~~~~----L~l~s~lv~~------fg~~-------- 115 (344)
.|.++-+.+|+++.......+..+.+.++ .+++.+....... ...+ +...+.+... ++++
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 307 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 46788888999999999888777777777 7777766655432 2211 1111222221 1110
Q ss_pred --cchHHHHHHHHHhHHHHHHhhcCC--CCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchh
Q psy12900 116 --HCVSGLLDMVQAFLPPTYAILQEE--DGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREA 191 (344)
Q Consensus 116 --~~~~~l~~~~~~l~~~~~~~l~~~--~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~ 191 (344)
.....+...+..+....+..+... +..++++.+-.....++..+....|. ..++.++......+...+...
T Consensus 308 ~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-----~~~~~~~~~l~~~l~~~~~~~ 382 (462)
T 1ibr_B 308 EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-----DIVPHVLPFIKEHIKNPDWRY 382 (462)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-----THHHHHHHHHHHHTTCSSHHH
T ss_pred cchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-----HHHHHHHHHHHHHhcCCChHH
Confidence 111122333445555556666542 12345667777888888888888774 344555665556666666666
Q ss_pred HHHHHHHHHHHhh
Q psy12900 192 NSTVMKFFYDLIH 204 (344)
Q Consensus 192 ~~aa~~Fl~~li~ 204 (344)
-.+++..+..+..
T Consensus 383 r~aal~~l~~l~~ 395 (462)
T 1ibr_B 383 RDAAVMAFGCILE 395 (462)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhc
Confidence 6777777777765
No 35
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=56.27 E-value=88 Score=26.15 Aligned_cols=155 Identities=12% Similarity=0.137 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcchHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHh
Q psy12900 83 EPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQR 162 (344)
Q Consensus 83 ~~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~~~~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~ 162 (344)
..++..+...+.+.+.+..-..+..++..+.. .....+..-.+.+....+..+.. .++.+-+.....+..++..
T Consensus 55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~-~l~~~~~~~~~~ilp~ll~~l~d-----~~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 55 GALVSALKKVITKDSNVVLVAMAGKCLALLAK-GLAKRFSNYASACVPSLLEKFKE-----KKPNVVTALREAIDAIYAS 128 (242)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-HHGGGGHHHHHHHHHHHHHGGGC-----CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHc
Confidence 45555555555423333333333333333322 11113333344555555555554 3456777777777777664
Q ss_pred CcccccCchhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHH
Q psy12900 163 APIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQAL 242 (344)
Q Consensus 163 ~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~L 242 (344)
.+ +..++..-..++...+...-..++.++..++....... ....+-+.+
T Consensus 129 ~~--------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~-----------------------~~~~~l~~l 177 (242)
T 2qk2_A 129 TS--------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA-----------------------LNKKLLKLL 177 (242)
T ss_dssp SC--------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG-----------------------CCHHHHHHH
T ss_pred CC--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC-----------------------ccHHHHHHH
Confidence 43 23444444556776677777888999998876532110 001122344
Q ss_pred HHHHHHHchhccCccchhcHHHHHHHHHHhCHH
Q psy12900 243 VSNLLQACVFSLHTYMMADVADVLYELISVDRQ 275 (344)
Q Consensus 243 v~~ll~~l~g~~prs~~~~~a~vL~~L~~~~~~ 275 (344)
+..++..+. +.-........+.|..+....+.
T Consensus 178 ~p~l~~~l~-D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 178 TTSLVKTLN-EPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHhc-CCChHHHHHHHHHHHHHHHHcCH
Confidence 444444443 33334445566777777766664
No 36
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=52.68 E-value=1.6e+02 Score=27.90 Aligned_cols=157 Identities=10% Similarity=0.079 Sum_probs=82.1
Q ss_pred HHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Q psy12900 37 PFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLE-PLVKQIVVLYSKHPHSSFLYLGSILVDEYAT 114 (344)
Q Consensus 37 ~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~-~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~ 114 (344)
......+ |.+..++. ..|.++.+.+|.++.............++. .++..++.... .+......-+..++..+..
T Consensus 252 ~~~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~-~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 252 WSVVSQALPTLAKLIY--SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS-HESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp HHHHGGGHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG-CSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC-CCChhhHHHHHHHHHHHHc
Confidence 3344556 66666653 357889999999998876432222222221 12333333333 2333333333334444433
Q ss_pred CcchHHHHHHHH-HhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccc---cCchhhHHHHHHHHHhcccCcch
Q psy12900 115 SHCVSGLLDMVQ-AFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAF---LTSSFISSVMQCGILATHLDHRE 190 (344)
Q Consensus 115 ~~~~~~l~~~~~-~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~l---l~s~~l~~l~~~al~~L~~~e~~ 190 (344)
........++. .+......+|+. .++++...-...+..+...+|... +....++.++.+ |...+.+
T Consensus 329 -~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l----L~~~~~~ 398 (530)
T 1wa5_B 329 -GNDLQTQVVINAGVLPALRLLLSS-----PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL----LEVAEYK 398 (530)
T ss_dssp -SCHHHHHHHHHTTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHH----HHHSCHH
T ss_pred -CCHHHHHHHHHcchHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH----HhcCCHH
Confidence 11112222221 234445555654 257788888888888776555432 223345555543 3345667
Q ss_pred hHHHHHHHHHHHhhcC
Q psy12900 191 ANSTVMKFFYDLIHNN 206 (344)
Q Consensus 191 ~~~aa~~Fl~~li~~~ 206 (344)
..+.++..+..+...+
T Consensus 399 v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 399 TKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 7788888888887654
No 37
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=40.47 E-value=22 Score=20.77 Aligned_cols=15 Identities=13% Similarity=-0.053 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHH
Q psy12900 298 AATPEQLIEFHSQVT 312 (344)
Q Consensus 298 ~vt~~~k~~F~~~l~ 312 (344)
.+|+++|+.|++++-
T Consensus 17 nLtEeQrn~yI~slk 31 (34)
T 1l6x_B 17 NLNEEQRNAKIKSIR 31 (34)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHhHHHHHh
Confidence 489999999999874
No 38
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=40.44 E-value=92 Score=28.18 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q psy12900 301 PEQLIEFHSQVT 312 (344)
Q Consensus 301 ~~~k~~F~~~l~ 312 (344)
+++|+.+++.+.
T Consensus 309 ~~~r~~i~~~i~ 320 (351)
T 3gvo_A 309 PAQRKIIMHKIR 320 (351)
T ss_dssp HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHH
Confidence 555666666554
No 39
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=39.97 E-value=2.4e+02 Score=26.44 Aligned_cols=157 Identities=10% Similarity=0.075 Sum_probs=80.0
Q ss_pred HHHHHhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Q psy12900 37 PFVCVNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLE-PLVKQIVVLYSKHPHSSFLYLGSILVDEYAT 114 (344)
Q Consensus 37 ~~~~~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~-~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~ 114 (344)
......+ |.+..++ ...|.++.+.+|.++.+...........++. .++..++..... +.+....-+..++.....
T Consensus 239 ~~~~~~~l~~L~~lL--~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 239 FEQTRPALPALARLI--HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-PSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp HHHHTTHHHHHHHHT--TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC-CChhHHHHHHHHHHHHHc
Confidence 3344455 6555555 3568899999999998876432222112211 123333333332 222232233333333332
Q ss_pred CcchHHHHHHH-HHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCccc---ccCchhhHHHHHHHHHhcccCcch
Q psy12900 115 SHCVSGLLDMV-QAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA---FLTSSFISSVMQCGILATHLDHRE 190 (344)
Q Consensus 115 ~~~~~~l~~~~-~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~---ll~s~~l~~l~~~al~~L~~~e~~ 190 (344)
........++ ..+......+|+.. .++++...-...+..+....+.. ++....++.++.+ |...+.+
T Consensus 316 -~~~~~~~~~~~~~~l~~L~~lL~~~----~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l----L~~~~~~ 386 (528)
T 4b8j_A 316 -GDDAQTQCIIDHQALPCLLSLLTQN----LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNL----LQTAEFD 386 (528)
T ss_dssp -SCHHHHHHHHTTTHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHH----HHHSCHH
T ss_pred -CCHHHHHHHHHhhhHHHHHHHHcCC----CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH----HhcCCHH
Confidence 1122222222 12233445555541 26788888888888877655542 2223445555543 3344667
Q ss_pred hHHHHHHHHHHHhhc
Q psy12900 191 ANSTVMKFFYDLIHN 205 (344)
Q Consensus 191 ~~~aa~~Fl~~li~~ 205 (344)
..+.++..+..+...
T Consensus 387 v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 387 IKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 788888888888765
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=38.65 E-value=1.5e+02 Score=23.65 Aligned_cols=149 Identities=9% Similarity=0.129 Sum_probs=78.4
Q ss_pred hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcchHHHH
Q psy12900 44 GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLE-PLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLL 122 (344)
Q Consensus 44 pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~-~i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~~~~~~~l~ 122 (344)
|.+..++ ...|.++.+.+|..++.....-......++. ..++.++..... +.+....-+..++..... .......
T Consensus 15 ~~l~~LL--~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~-~~~~~~~ 90 (210)
T 4db6_A 15 PQMVQQL--NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIAS-GGNEQIQ 90 (210)
T ss_dssp HHHHHHT--TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTT-SCHHHHH
T ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhc-CCcHHHH
Confidence 5555554 3578899999999999876432222222221 133333333332 234444444444554432 1111111
Q ss_pred HHHH-HhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCccc---ccCchhhHHHHHHHHHhcccCcchhHHHHHHH
Q psy12900 123 DMVQ-AFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIA---FLTSSFISSVMQCGILATHLDHREANSTVMKF 198 (344)
Q Consensus 123 ~~~~-~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~---ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~F 198 (344)
.+++ ......+.+|++ .+|++.+.-...+..+....|.. +.....++.+++ .+...+.+..+.++..
T Consensus 91 ~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 91 AVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ----LLSSPNEQILQEALWA 161 (210)
T ss_dssp HHHHTTCHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH----HTTCSCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcC-----CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHH----HHcCCCHHHHHHHHHH
Confidence 2221 234445566655 25778888877777776655543 222333444444 3455666778888888
Q ss_pred HHHHhhc
Q psy12900 199 FYDLIHN 205 (344)
Q Consensus 199 l~~li~~ 205 (344)
+..+...
T Consensus 162 L~~l~~~ 168 (210)
T 4db6_A 162 LSNIASG 168 (210)
T ss_dssp HHHHHTS
T ss_pred HHHHHcC
Confidence 8888764
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=37.14 E-value=1.7e+02 Score=23.84 Aligned_cols=201 Identities=10% Similarity=0.114 Sum_probs=0.0
Q ss_pred Hhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHhcC--Cc
Q psy12900 41 VNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEP-LVKQIVVLYSKHPHSSFLYLGSILVDEYAT--SH 116 (344)
Q Consensus 41 ~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~-i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~--~~ 116 (344)
..+ |.+-.++.. .+.++.+.++.++.+........-..++.. .++.+..... .+.+.....+..++..... +.
T Consensus 43 ~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~ 119 (252)
T 4hxt_A 43 AGGVEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDE 119 (252)
T ss_dssp TTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHH
T ss_pred CCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHH
Q ss_pred chHHHHHHHHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCc---ccccCchhhHHHHHHHHHhcccCcchhHH
Q psy12900 117 CVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAP---IAFLTSSFISSVMQCGILATHLDHREANS 193 (344)
Q Consensus 117 ~~~~l~~~~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P---~~ll~s~~l~~l~~~al~~L~~~e~~~~~ 193 (344)
....+.+ .........++.+ ++|++...-...+..+....| ..+.....++.+++ .+...+.+...
T Consensus 120 ~~~~~~~--~~~i~~L~~~l~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----ll~~~~~~v~~ 188 (252)
T 4hxt_A 120 AIKAIVD--AGGVEVLVKLLTS-----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK----LLTSTDSEVQK 188 (252)
T ss_dssp HHHHHHH--TTHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH----HTTCSCHHHHH
T ss_pred HHHHHHH--CCCHHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHH----HHCCCCHHHHH
Q ss_pred HHHHHHHHHhhcCCCCCcccCccccCCcchhHHHHHHHHHHHHHhhHHHHHHHHHHchhccCccchhcHHHHHHHHHHhC
Q psy12900 194 TVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVD 273 (344)
Q Consensus 194 aa~~Fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~G~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~~ 273 (344)
.++..+..+.... ....+.+...| +-..+..+..+-..........+|..|....
T Consensus 189 ~a~~~L~~l~~~~----------------------~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 189 EAARALANIASGP----------------------TSAIKAIVDAG---GVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHTTSB----------------------HHHHHHHHHTT---HHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC----------------------HHHHHHHHHCC---CHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Q ss_pred HHHHHHH
Q psy12900 274 RQVSNQW 280 (344)
Q Consensus 274 ~~~~~~W 280 (344)
+.....|
T Consensus 244 ~~~~~~~ 250 (252)
T 4hxt_A 244 WLEHHHH 250 (252)
T ss_dssp BCCC---
T ss_pred Ccccccc
No 42
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=29.04 E-value=24 Score=21.13 Aligned_cols=15 Identities=13% Similarity=-0.053 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHH
Q psy12900 298 AATPEQLIEFHSQVT 312 (344)
Q Consensus 298 ~vt~~~k~~F~~~l~ 312 (344)
.+|+++|+.|++++-
T Consensus 22 nLtEeQrn~yI~slk 36 (38)
T 1zda_A 22 NLNEEQRNAKIKSIR 36 (38)
T ss_dssp SSCTTHHHHHHHHHS
T ss_pred CCCHHHHHhHHHHhh
Confidence 589999999999873
No 43
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=27.12 E-value=3.5e+02 Score=26.07 Aligned_cols=98 Identities=7% Similarity=0.107 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHH----hhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh--------cC-CcchHHHHHH
Q psy12900 58 RVMEHSSRCLRYAIRC----VGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEY--------AT-SHCVSGLLDM 124 (344)
Q Consensus 58 ~vvE~~c~~lr~~~r~----~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~lv~~f--------g~-~~~~~~l~~~ 124 (344)
..++..++-+++.+.. +...|..+|..-=..+...|..+.-.-|-.-+..+-+-| |. ......+.+-
T Consensus 64 ~~l~~~s~~L~~~l~~~~~~F~e~F~~LL~~Se~~l~~mF~~tYg~ly~qn~~~f~~LF~~L~~Yy~g~~v~Lee~v~~F 143 (506)
T 3odn_A 64 GHTKDQISRMSGILGSKATKFKDIFTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLLEVMDKF 143 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3455556666666544 444455555443344555555444333321122221222 22 2344455565
Q ss_pred HHHhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHH
Q psy12900 125 VQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQ 161 (344)
Q Consensus 125 ~~~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~ 161 (344)
|..|...+|.+++. +. ++-+||...+.+..+
T Consensus 144 f~~Lf~~~f~llnp--~~----~~s~dY~eCl~~~~~ 174 (506)
T 3odn_A 144 FNTLYQKMFTVLNT--QY----TFDENYMRCVSEHMK 174 (506)
T ss_dssp HHHHHHHHHHHHTT--TS----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--CC----CCChHHHHHHHHHHH
Confidence 66777777777644 33 345666666665543
No 44
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=26.36 E-value=4.2e+02 Score=26.40 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=28.0
Q ss_pred hHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcc
Q psy12900 128 FLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPI 165 (344)
Q Consensus 128 l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~ 165 (344)
-....|.++.+.++ .+-.-+|+|.+.++..+++++|.
T Consensus 209 aFe~Lf~Ii~~Eg~-~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 209 AFERLLDIITEEGN-SDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp HHHHHHHHHHHHTG-GGSHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHhcCC-CccchhHHHHHHHHHHHHhcCHH
Confidence 34556777776533 45567999999999999999983
No 45
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=26.33 E-value=3.5e+02 Score=24.22 Aligned_cols=155 Identities=9% Similarity=0.052 Sum_probs=0.0
Q ss_pred Hhh-hhHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhHHhHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcch
Q psy12900 41 VNK-GTIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEP-LVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCV 118 (344)
Q Consensus 41 ~~i-pil~~il~~~~~d~~vvE~~c~~lr~~~r~~~~~~~pll~~-i~~~l~~~f~~~~~~~~L~l~s~lv~~fg~~~~~ 118 (344)
..+ |.+-.++. ..+.++.+.+++++.............++.. +++.+...... +.+..-.-+..++..... ...
T Consensus 233 ~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~vr~~a~~~L~~l~~-~~~ 308 (450)
T 2jdq_A 233 AGVCRRLVELLM--HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITA-GNR 308 (450)
T ss_dssp TTTHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTT-SCH
T ss_pred cCcHHHHHHHHC--CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC-CCHHHHHHHHHHHHHHHc-CCH
Q ss_pred HHHHHHHH-HhHHHHHHhhcCCCCCCCCCchHHHHHHHHHHHHHhCcccccCchhhHHHHHHHHHhcccCcchhHHHHHH
Q psy12900 119 SGLLDMVQ-AFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMK 197 (344)
Q Consensus 119 ~~l~~~~~-~l~~~~~~~l~~~~~~~~~PDvved~f~L~~r~l~~~P~~ll~s~~l~~l~~~al~~L~~~e~~~~~aa~~ 197 (344)
.....+++ .+....+.+++. .+|++-..-...+..+...........-.-..++..-+..+...+.+....++.
T Consensus 309 ~~~~~~~~~~~l~~L~~~l~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 383 (450)
T 2jdq_A 309 AQIQTVIDANIFPALISILQT-----AEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHH
Q ss_pred HHHHHhh
Q psy12900 198 FFYDLIH 204 (344)
Q Consensus 198 Fl~~li~ 204 (344)
.+..++.
T Consensus 384 aL~~l~~ 390 (450)
T 2jdq_A 384 GLENILR 390 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 46
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=25.92 E-value=1.1e+02 Score=19.45 Aligned_cols=28 Identities=7% Similarity=0.297 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhchhhcHHHHHHHHHH
Q psy12900 301 PEQLIEFHSQVTRSESAYDVGQALKELS 328 (344)
Q Consensus 301 ~~~k~~F~~~l~~~~~~r~~~~~v~~F~ 328 (344)
+.+|++|...+...++..+++++=++..
T Consensus 18 p~~r~~Fe~ki~~~~tE~q~k~iKr~II 45 (49)
T 3bbz_A 18 PQMKQAFEQRLAKASTEDALNDIKRDII 45 (49)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8999999999998887766666555543
No 47
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=25.15 E-value=1.9e+02 Score=20.73 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHhch---hhcHHHHHHHHHHHHHH
Q psy12900 277 SNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSE---SAYDVGQALKELSRLYR 332 (344)
Q Consensus 277 ~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~~~~---~~r~~~~~v~~F~~~cr 332 (344)
+..++...++..|-. .+|+.+-+.|+..+.... ..++....++.+...+.
T Consensus 34 l~~~i~~~lg~~~l~------~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~Av 86 (118)
T 2kj8_A 34 FDDDILPIIGGLEIQ------DIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAI 86 (118)
T ss_dssp HHHHHHHHHTTSBTT------SCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHhcCCcHH------HCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334444455554443 789999999999987532 22566666777666553
No 48
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=23.24 E-value=44 Score=28.30 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=32.8
Q ss_pred HHHHHHHHHHchhccCccchhcHHHHHHHHHHhCHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHH
Q psy12900 240 QALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVT 312 (344)
Q Consensus 240 ~~Lv~~ll~~l~g~~prs~~~~~a~vL~~L~~~~~~~~~~Wl~~~l~~lp~~~~~~~~~vt~~~k~~F~~~l~ 312 (344)
-.+.+++|+-...+...++++...+.+..|..+ ..-|+.+|+.+|+. -.+|..|++.|-
T Consensus 67 vnl~Es~LR~a~~~~~ey~~~~~e~~fqel~~r-----A~~LK~iLSrIPdE---------I~dR~~FL~tIK 125 (213)
T 3ajm_A 67 VNFTESLLRMAADDVEEYMIERPEPEFQDLNEK-----ARALKQILSKIPDE---------INDRVRFLQTIK 125 (213)
T ss_dssp HHHHHHHHHHGGGCCTTTCCCCCSHHHHHHHHH-----HHHHHHHHHTHHHH---------TTCHHHHHHHHH
T ss_pred CChHHHHHHhhcccHHHHhcCCchHHHHHHHHH-----HHHHHHHHHhCchh---------hcchHHHHHHHH
Confidence 456677777665565556655544444444443 22355566666665 234666666554
No 49
>1n6j_G Calcineurin-binding protein cabin 1; MADS-BOX, protein-DNA complex, histone deacetylases, transcription/DNA complex; 2.20A {Homo sapiens}
Probab=21.91 E-value=91 Score=17.74 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHHHHHhchh
Q psy12900 295 GMNAATPEQLIEFHSQVTRSES 316 (344)
Q Consensus 295 ~~~~vt~~~k~~F~~~l~~~~~ 316 (344)
|.+.++++.|++.-..|+...+
T Consensus 5 p~gsiseetkqklk~~ils~qs 26 (35)
T 1n6j_G 5 PKGSISEETKQKLKSAILSAQS 26 (35)
T ss_dssp CSSCCCHHHHHHHHHHHHTTCS
T ss_pred CCCcccHHHHHHHHHHHHhhHh
Confidence 3457999999999999987764
No 50
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=21.69 E-value=6.5e+02 Score=25.65 Aligned_cols=154 Identities=5% Similarity=-0.039 Sum_probs=79.7
Q ss_pred hhHHHHHHHhc--cchHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcCCCccHHHHHHHH----HHHhcC--C
Q psy12900 44 GTIFKTCETYQ--QDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSIL----VDEYAT--S 115 (344)
Q Consensus 44 pil~~il~~~~--~d~~vvE~~c~~lr~~~r~~~~~~~pll~~i~~~l~~~f~~~~~~~~L~l~s~l----v~~fg~--~ 115 (344)
..+++++.-.. .+..++..+...+.-.+..+.. ++....++.+..-+.++-....-...+.+ +..+.. |
T Consensus 519 ~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P 595 (799)
T 1vsy_4 519 VYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNN 595 (799)
T ss_dssp HHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCH
Confidence 55555555443 3455555444444433333332 34455555555544443332221111111 333333 3
Q ss_pred cchHHHHHHHHHhHHHHHHhhcCC-----CCCC--CCCchHHHHHHHHHHHHHhCcccccCc-hhhHHHHHHHHHhcccC
Q psy12900 116 HCVSGLLDMVQAFLPPTYAILQEE-----DGLK--NHPDTVDDLFRLCTRFLQRAPIAFLTS-SFISSVMQCGILATHLD 187 (344)
Q Consensus 116 ~~~~~l~~~~~~l~~~~~~~l~~~-----~~~~--~~PDvved~f~L~~r~l~~~P~~ll~s-~~l~~l~~~al~~L~~~ 187 (344)
+ .+...+..++........+. .+.+ ..-..+.=++.+++.++++....++.. +.+-.+++.... ...
T Consensus 596 ~---~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~--~~k 670 (799)
T 1vsy_4 596 G---LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYD--NVT 670 (799)
T ss_dssp G---GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHH--SCC
T ss_pred H---HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHH--Hhc
Confidence 3 25555555555444334332 1111 122467778999999999999988866 556666665533 333
Q ss_pred cchhHHHHHHHHHHHhhc
Q psy12900 188 HREANSTVMKFFYDLIHN 205 (344)
Q Consensus 188 e~~~~~aa~~Fl~~li~~ 205 (344)
.....+.+++++..++..
T Consensus 671 ~~~~~~~~~~ll~~lL~s 688 (799)
T 1vsy_4 671 NPPLDVITSIVIHSALAT 688 (799)
T ss_dssp CHHHHHHHTTHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHH
Confidence 433456677887777765
No 51
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=20.99 E-value=2.1e+02 Score=20.31 Aligned_cols=35 Identities=3% Similarity=0.006 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHhchhh---cHHHHHHHHHHHHH
Q psy12900 297 NAATPEQLIEFHSQVTRSESA---YDVGQALKELSRLY 331 (344)
Q Consensus 297 ~~vt~~~k~~F~~~l~~~~~~---r~~~~~v~~F~~~c 331 (344)
..+++.+-++|++.+....+. +++...++.+...+
T Consensus 49 ~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~i~~~A 86 (112)
T 3lys_A 49 SEITASSYQRALNKFAETHAKASTKGFHTRVRASIQCL 86 (112)
T ss_dssp TTCCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 379999999999998654322 45555555554444
Done!