RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12900
(344 letters)
>gnl|CDD|235076 PRK02842, PRK02842, light-independent protochlorophyllide reductase
subunit N; Provisional.
Length = 427
Score = 33.3 bits (77), Expect = 0.19
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 89 IVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDM---VQAFLPPTY--AILQEEDGLK 143
+V L+ K + FL +GS + LL V F P + AIL+E D L
Sbjct: 26 VVWLHRKIQDAFFLVVGS---------RTCAHLLQSAAGVMIFAEPRFGTAILEEGD-LA 75
Query: 144 NHPDTVDDLFRLCTRFLQRAP---IAFLTSSFISSVM 177
D ++L R+ ++R P + FL S S V+
Sbjct: 76 GLADANEELDRVVEELIKRRPNISVLFLVGSCPSEVI 112
>gnl|CDD|238937 cd01979, Pchlide_reductase_N, Pchlide_reductase_N: N protein of the
NB protein complex of Protochlorophyllide
(Pchlide)_reductase. Pchlide reductase catalyzes the
reductive formation of chlorophyllide (chlide) from
protochlorophyllide (pchlide) during biosynthesis of
chlorophylls and bacteriochlorophylls. This group
contains both the light-independent Pchlide reductase
(DPOR) and light-dependent Pchlide reductase (LPOR).
Angiosperms contain only LPOR, cyanobacteria, algae and
gymnosperms contain both DPOR and LPOR, primitive
anoxygenic photosynthetic bacteria contain only DPOR. NB
is structurally similar to the FeMo protein of
nitrogenase, forming an N2B2 heterotetramer. N and B are
homologous to the FeMo alpha and beta subunits
respectively. Also in common with nitrogenase in vitro
DPOR activity requires ATP hydrolysis and dithoionite or
ferredoxin as electron donor. The NB protein complex may
serve as a catalytic site for Pchlide reduction similar
to MoFe for nitrogen reduction.
Length = 396
Score = 32.7 bits (75), Expect = 0.29
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 89 IVVLYSKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTY--AILQEEDGLKNHP 146
+ LY K S FL +G+ +H + L V F P + A L+E D L
Sbjct: 17 VAWLYQKIEDSFFLVVGT-----KTCAHFLQNALG-VMIFAEPRFAMAELEEGD-LSALL 69
Query: 147 DTVDDLFRLCTRFLQRAP--IAFLTSSFISSVMQ 178
+ +L R+ T+ + + FL S + V++
Sbjct: 70 NDYAELDRVVTQIKRDRNPSVIFLIGSCTTEVIK 103
>gnl|CDD|215131 PLN02237, PLN02237, glyceraldehyde-3-phosphate dehydrogenase B.
Length = 442
Score = 31.8 bits (72), Expect = 0.46
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 6 VLGVSRAELALSQHFTKHVQHSAVCRCSFLCPFVCVN-------KGTIFKTCETYQQDAR 58
V+GV+ + H ++ +A C + L PFV V KGT+ T +Y D R
Sbjct: 208 VVGVNEDDYD---HEVANIVSNASCTTNCLAPFVKVLDEEFGIVKGTM-TTTHSYTGDQR 263
Query: 59 VMEHSSRCLRYA 70
+++ S R LR A
Sbjct: 264 LLDASHRDLRRA 275
>gnl|CDD|204733 pfam11753, DUF3310, Protein of unknwon function (DUF3310). This is
a family of conserved bacteriophage proteins of unknown
function.
Length = 60
Score = 26.9 bits (60), Expect = 3.2
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 303 QLIEFHSQVTRS-ESAYDVGQALKELSRLYRK 333
+ I+F VT + +G A+K LSR K
Sbjct: 14 ECIDFIESVTYEQALGFCLGNAIKYLSR-AGK 44
>gnl|CDD|223142 COG0064, GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit
(PET112 homolog) [Translation, ribosomal structure and
biogenesis].
Length = 483
Score = 29.5 bits (67), Expect = 3.3
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 225 DMRHRLMKD--IVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQ 282
+ R R +K+ + + L S+ +AD + + + + +N
Sbjct: 305 EKRERYIKEYGLSEYDARVLTSDK-----------ELADYFEEAVKAGADAKLAANWLTN 353
Query: 283 DTISQLPK-NTPAGMNAATPEQLIEF 307
+ + L K + TPEQL E
Sbjct: 354 ELLGLLNKAGITLEESPLTPEQLAEL 379
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 28.5 bits (64), Expect = 5.4
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 255 HTYMMADVADVLYELIS-VDRQVSNQWLQ---DTISQLPKNTPAGMNAATPEQLIEFHSQ 310
H + ADV DVL +L+ V+ Q +W Q D + P P + + LI +
Sbjct: 322 HVAIQADVDDVLAQLLPLVEAQPRAEWHQLVADLQREFPCPIPKADDPLSHYGLINAVAA 381
Query: 311 VTRSES--AYDVGQ 322
+ DVGQ
Sbjct: 382 CVDDNAIITTDVGQ 395
>gnl|CDD|191352 pfam05716, AKAP_110, A-kinase anchor protein 110 kDa (AKAP 110).
This family consists of several mammalian protein kinase
A anchoring protein 3 (PRKA3) or A-kinase anchor protein
110 kDa (AKAP 110) sequences. Agents that increase
intracellular cAMP are potent stimulators of sperm
motility. Anchoring inhibitor peptides, designed to
disrupt the interaction of the cAMP-dependent protein
kinase A (PKA) with A kinase-anchoring proteins (AKAPs),
are potent inhibitors of sperm motility. PKA anchoring
is a key biochemical mechanism controlling motility.
AKAP110 shares compartments with both RI and RII
isoforms of PKA and may function as a regulator of both
motility- and head-associated functions such as
capacitation and the acrosome reaction.
Length = 685
Score = 28.9 bits (64), Expect = 5.5
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 230 LMKDIVSKHGQALVSNLLQACVFSLHTY---MMADVADVLYELISVDRQVSNQWLQ 282
++K ++ KH + +VS+L+ + + +LH +M D V +V R + + Q
Sbjct: 151 VLKKVLLKHAKEVVSDLIDSFMKNLHNVTGVLMTDTDFV----SAVKRNLFSHGSQ 202
>gnl|CDD|214827 smart00807, AKAP_110, A-kinase anchor protein 110 kDa. This family
consists of several mammalian protein kinase A anchoring
protein 3 (PRKA3) or A-kinase anchor protein 110 kDa
(AKAP 110) sequences. Agents that increase intracellular
cAMP are potent stimulators of sperm motility. Anchoring
inhibitor peptides, designed to disrupt the interaction
of the cAMP-dependent protein kinase A (PKA) with A
kinase-anchoring proteins (AKAPs), are potent inhibitors
of sperm motility. PKA anchoring is a key biochemical
mechanism controlling motility. AKAP110 shares
compartments with both RI and RII isoforms of PKA and
may function as a regulator of both motility- and
head-associated functions such as capacitation and the
acrosome reaction.
Length = 851
Score = 28.4 bits (63), Expect = 5.9
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 230 LMKDIVSKHGQALVSNLLQACVFSLHTY---MMADVADVLYELISVDRQVSNQWLQ 282
++K ++ KH + +VS+L+ + + +LH +M D V +V R + + Q
Sbjct: 322 VLKKVLLKHAKEVVSDLIDSFMKNLHNVTGVLMTDTDFV----SAVKRNLFSHGSQ 373
>gnl|CDD|217040 pfam02447, GntP_permease, GntP family permease. This is a family
of integral membrane permeases that are involved in
gluconate uptake. E. coli contains several members of
this family including GntU, a low affinity transporter
and GntT, a high affinity transporter.
Length = 441
Score = 28.4 bits (64), Expect = 7.1
Identities = 23/99 (23%), Positives = 29/99 (29%), Gaps = 38/99 (38%)
Query: 58 RVMEHSS---RCLRYAIRCVGKDFAH---------------------LLEPLVKQIVVLY 93
+++ S R I+ GK LL PLV I
Sbjct: 73 KLLADSGGAERIATTLIKKFGKKRVQWAVVLAGFIVGIPLFFEVGFVLLIPLVFAI---- 128
Query: 94 SKHPHSSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPT 132
+K S L LG L A +H FLPP
Sbjct: 129 AKEAKISLLKLGIPLAAALAVTHG----------FLPPH 157
>gnl|CDD|218113 pfam04499, SAPS, SIT4 phosphatase-associated protein. This family
includes a conserved region from a group of yeast
proteins that associate with the SIT4 phosphatase. This
association is required for SIT4's role in G1 cyclin
transcription and for bud formation. This family also
includes homologous regions from other eukaryotes.
Length = 380
Score = 28.0 bits (63), Expect = 8.5
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 262 VADVLYELISVDRQVSNQ----WL--QDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSE 315
+ D+L +LIS ++ WL Q I +L ++ +PE + S
Sbjct: 35 IMDLLLKLISTEKPELPTGIIEWLNEQKLIPKL-------IDLLSPEYDSDVQS------ 81
Query: 316 SAYDVGQALKELSRLYRKHM 335
+ LK + +
Sbjct: 82 ---NAADFLKAIITISANQP 98
>gnl|CDD|238004 cd00044, CysPc, Calpains, domains IIa, IIb; calcium-dependent
cytoplasmic cysteine proteinases, papain-like. Functions
in cytoskeletal remodeling processes, cell
differentiation, apoptosis and signal transduction.
Length = 315
Score = 27.7 bits (62), Expect = 8.5
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 146 PDTVDDLFRLCTRFLQRAPIAFLTSSFISSV---MQCGILATH 185
+DLF L FLQ + ++ S G++ H
Sbjct: 195 SSGDNDLFALLLSFLQGGSLIGCSTGSRSEEEARTANGLVKGH 237
>gnl|CDD|149159 pfam07925, RdRP_5, Reovirus RNA-dependent RNA polymerase lambda 3.
The sequences in this family are similar to the reoviral
minor core protein lambda 3, which functions as a
RNA-dependent RNA polymerase within the protein capsid.
It is organised into 3 domains. N- and C-terminal
domains create a 'cage' that encloses a conserved
central catalytic domain within a hollow centre; this
catalytic domain is arranged to form 'fingers', 'palm'
and 'thumb' subdomains. Unlike other RNA polymerases,
like HIV reverse transcriptase and T7 RNA polymerase,
lambda 3 protein binds template and substrate with only
localised rearrangements, and catalytic activity can
occur with little structural change. However, the
structure of the catalytic complex is similar to that of
other polymerase catalytic complexes with known
structure.
Length = 1271
Score = 28.0 bits (62), Expect = 9.1
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 20/82 (24%)
Query: 118 VSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVM 177
+SGL M+Q L Y V+D F F F T++F S
Sbjct: 644 ISGLQTMIQ-HLAKLYK--------AGFSYRVNDSFSSGNDF------TFPTTTFPS--- 685
Query: 178 QCGILATHLDHREANSTVMKFF 199
G AT +H NST+M+ F
Sbjct: 686 --GSTATSTEHTANNSTMMETF 705
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.134 0.400
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,004,863
Number of extensions: 1594916
Number of successful extensions: 1749
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1745
Number of HSP's successfully gapped: 16
Length of query: 344
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 246
Effective length of database: 6,590,910
Effective search space: 1621363860
Effective search space used: 1621363860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.9 bits)