RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12900
(344 letters)
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing,
nuclear transport, mRNA splicing, mRNA transport; 3.35A
{Drosophila melanogaster}
Length = 971
Score = 151 bits (382), Expect = 8e-41
Identities = 38/292 (13%), Positives = 98/292 (33%), Gaps = 28/292 (9%)
Query: 46 IFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLG 105
+ E + ++ V+E + +++AI + F +L+ L IV + + L +
Sbjct: 696 FKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEIS 755
Query: 106 SILVDEYATS-HCVSGLLDMVQAFLPPTYAILQE--EDGLKNHPDTVDDLFRLCTRFLQR 162
+ + C + +++ F+ ++ + + E N DT++ F T+ +++
Sbjct: 756 KTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKK 815
Query: 163 APIAFLTSS-FISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSE 221
P + ++ L A ++F + +R
Sbjct: 816 IPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR-------------- 861
Query: 222 EDFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWL 281
H + ++V G+ + + + + AD+L + W+
Sbjct: 862 -----NHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWM 916
Query: 282 QDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAY-DVGQALKELSRLYR 332
+ +S T T + + + + + + Q L E++ R
Sbjct: 917 KSLMSTPNFPTQ----LITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTR 964
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A
{Homo sapiens} PDB: 2xwu_B
Length = 963
Score = 142 bits (359), Expect = 1e-37
Identities = 63/291 (21%), Positives = 113/291 (38%), Gaps = 28/291 (9%)
Query: 45 TIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYL 104
I K + DA+V+E +++ + DFA ++ L + + +YS P +S L L
Sbjct: 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDL 746
Query: 105 GSILVDEYATSH-CVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRA 163
LV +A + + T + Q+ G ++HPD VD +L + L+R
Sbjct: 747 TRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQ--GPRDHPDIVDSFMQLLAQALKRK 804
Query: 164 PIAFLTSS-FISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEE 222
P FL + +V QC +LA FF +L+
Sbjct: 805 PDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG--------------- 849
Query: 223 DFDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMADVADVLYELISVDRQVSNQWLQ 282
+ +V + G+ L+ +L+A +M AD+L+ L + + W++
Sbjct: 850 ----EVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSMWIK 905
Query: 283 DTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYD-VGQALKELSRLYR 332
+ + + +PEQ F Q+ R V + +KE + L R
Sbjct: 906 EALQPPGFPSA----RLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCR 952
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 74.6 bits (182), Expect = 1e-14
Identities = 37/240 (15%), Positives = 90/240 (37%), Gaps = 29/240 (12%)
Query: 80 HLLEPLVKQIVVLYSKHPH----SSFLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAI 135
+ + PL+ +++ Y ++ L +I+V++ H + + + A T +
Sbjct: 777 NFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLG-GHITAEIPQIFDAVFECTLNM 835
Query: 136 LQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSF--ISSVMQCGILATHLDHREANS 193
+ + +P+ + F L AFL V+ I A R
Sbjct: 836 IN--KDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVAD 893
Query: 194 TVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFS 253
T ++ + L+ N ++ ++ ++ DI+ H ++V++ +
Sbjct: 894 TGLQILFTLLQN---VAQEEAAAQSF-------YQTYFCDILQ-HIFSVVTDTSHTAGLT 942
Query: 254 LHTYMMADV-----ADVLYELISVDRQVSNQ-WLQDTISQLPKNTPAGMNAATPEQLIEF 307
+H ++A + + ++ V+NQ ++QD ++ L K+ + Q+ F
Sbjct: 943 MHASILAYMFNLVEEGKISTPLNPGNPVNNQMFIQDYVANLLKSAFPHL---QDAQVKLF 999
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 61.1 bits (147), Expect = 2e-10
Identities = 34/279 (12%), Positives = 79/279 (28%), Gaps = 29/279 (10%)
Query: 45 TIFKTCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYL 104
IF + + + I VG D + L+ ++ + L
Sbjct: 703 EIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVDVLSF 762
Query: 105 GSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAP 164
S L+ Y + + M+ L ++ L + +DL + F+ +
Sbjct: 763 ISQLIHIYKD-NMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQ-- 819
Query: 165 IAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDF 224
L + S++ + D ++H ++ + +K +
Sbjct: 820 ---LLNKGFGSILFTEENQVYFDP---------LINSILHFANLVGEPATQKSS-----I 862
Query: 225 DMRHRLMKDIVSKHG----QALVSNLLQACVFSL----HTYMMADVADVLYELISVDRQV 276
+ +++ K G + +L C VL EL + + +
Sbjct: 863 ALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKII 922
Query: 277 SNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSE 315
+ S L +N E+ ++ +
Sbjct: 923 LEKLGDIYKSYLVTVYFPTVN-FPDVMASEYLQALSNLD 960
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 52.6 bits (125), Expect = 1e-07
Identities = 29/221 (13%), Positives = 75/221 (33%), Gaps = 28/221 (12%)
Query: 80 HLLEPLVKQIVVLYSKHPHSS----FLYLGSILVDEYATSHCVSGLLDMVQAFLPPTYAI 135
L+EPL+ ++ Y + + L + +V++ G++ ++Q+ T +
Sbjct: 751 VLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVG-HMIPQGVILILQSVFECTLDM 809
Query: 136 LQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLT--SSFISSVMQCGILATHLDHREANS 193
+ ++ +P+ + ++L +++ AFL + + A ++R+
Sbjct: 810 INKD--FTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEV 867
Query: 194 TVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFS 253
++ DL+ N + + + + VS S
Sbjct: 868 NGLQIALDLVKNIERMGNVP----------------FANEFHKNYFFIFVSETFFVLTDS 911
Query: 254 LHTY---MMADVADVLYELISVDRQVSNQWLQDTISQLPKN 291
H A + L L+ ++ + + + Q N
Sbjct: 912 DHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSN 952
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 38/293 (12%), Positives = 85/293 (29%), Gaps = 72/293 (24%)
Query: 116 HCVSGLLDMVQAF---LPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRA--PIAFL-- 168
+ +L+M+Q + P + D N + + R L+ L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWT--SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 169 ----TSSFISSV-MQCGILATHLDHREAN--STVMKFFYDLIHNNRVLSDKDGKK---KA 218
+ ++ + C IL T + + S L H++ L+ + K K
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 219 VSEEDFDMRH--------------RLMKDIVS-----KH-GQALVSNLLQACVFSLHTYM 258
+ D+ ++D ++ KH ++ ++++ + L
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 259 MADVADVLYELISV---DRQVSNQ-----WL-------QDTISQLPKNTPAGMNAATPEQ 303
+++ +SV + W +++L K + E
Sbjct: 371 YRK----MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KES 424
Query: 304 LIEFHSQVTRSESAYDVGQAL-KELSRLYRKHMKY-----------NYSYHHV 344
I S + + AL + + Y + Y Y H+
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Score = 42.9 bits (100), Expect = 1e-04
Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 30/161 (18%)
Query: 185 HLDHREANSTVMKFFY-DLIHNNRVLSDKDGKKKAVSEEDFDMRH--RLMKDIVSKHGQA 241
H H + + ++ Y D++ +FD + + K I+SK
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFE----DAFVD------NFDCKDVQDMPKSILSK---E 49
Query: 242 LVSNLLQACVFSLHTYMMADV-----ADVLYELISVDRQVSNQWLQDTISQLPKNTPAGM 296
+ +++ + T + +++ + + +++ ++L I + P+ M
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMM 108
Query: 297 NAATPEQLIEFHS--------QVTRSESAYDVGQALKELSR 329
EQ ++ V+R + + QAL EL
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Score = 37.1 bits (85), Expect = 0.010
Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 67/257 (26%)
Query: 123 DMVQAFLPP-------------TYAILQEE--DGLKNHPDTVDDLFRLCTRFLQRAPIAF 167
D++ F +IL +E D + D V RL L +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EE 77
Query: 168 LTSSFISSVMQC--GILATHLDHREANSTVMKFFY----DLIHN-NRVLSDKDGKKKAVS 220
+ F+ V++ L + + + ++M Y D ++N N+V + K VS
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-----KYNVS 132
Query: 221 --EEDFDMRHRLMKDIVSK----HG------QALVSNLLQA----CVFSLHTYMMADVAD 264
+ +R L++ +K G + ++ + C + + ++ +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKN 191
Query: 265 VLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQAL 324
+ V LQ + Q+ N + + ++ +L R S
Sbjct: 192 C-----NSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKL--------RIHSIQA----- 232
Query: 325 KELSRLYRKHMKYNYSY 341
EL RL K Y
Sbjct: 233 -ELRRLL-KSKPYENCL 247
Score = 32.5 bits (73), Expect = 0.23
Identities = 42/358 (11%), Positives = 103/358 (28%), Gaps = 107/358 (29%)
Query: 3 QSQVLGVSR-AELA--LSQHFTKHVQHSAVCRCSFLCPFVCVNKGTIFKTCETYQQDARV 59
++L +R ++ LS T H+ + E +
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHI------------SLDHHSMT--LTPDEVKSLLLKY 310
Query: 60 MEHSSRCLRYAIRCVGKDFAHLLEPL-VKQIVVLYSKHPHSSFLYLGSILVDEYATSHCV 118
++ + L P + I + D + +C
Sbjct: 311 LDCRPQDLPRE--------VLTTNPRRLSIIAESIRDGLATW---------DNWKHVNC- 352
Query: 119 SGLLDMVQAFLPPTYAILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQ 178
L ++++ L + L+ P +F + F A I + ++
Sbjct: 353 DKLTTIIESSL----------NVLE--PAEYRKMFDRLSVFPPSAHIP-------TILLS 393
Query: 179 CGILATHLDHREANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRL-MKDIVSK 237
++ + + V K L +K K+ +S + ++ +++ +
Sbjct: 394 --LIWFDVIKSDVMVVVNKLH------KYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 238 HGQALVSNLLQACVFSLHT---------------YMMADVADVLYELISVDRQV--SNQW 280
H +++V + F + + ++ E +++ R V ++
Sbjct: 446 H-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--HPERMTLFRMVFLDFRF 502
Query: 281 LQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDVGQALKELSRLYRKHMKYN 338
L+ I ++ NA S S + Q L + Y+ ++ N
Sbjct: 503 LEQKI----RHDSTAWNA---------------SGSILNTLQQL----KFYKPYICDN 537
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 63/403 (15%), Positives = 106/403 (26%), Gaps = 173/403 (42%)
Query: 11 RAELALSQHFTKHVQHSAVCRCSFLCPFVCVNKG-----TIFK---TCETYQQDARVMEH 62
A + + F K SA+ F V +G IF + Y E
Sbjct: 128 TARIMAKRPFDKKSN-SAL--------FRAVGEGNAQLVAIFGGQGNTDDY-----FEE- 172
Query: 63 SSRCLR--YAI-RCVGKDF----AHLLEPLVKQIVVLYSKHPHS----SFL--------- 102
LR Y + D A L L++ + +L
Sbjct: 173 ----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 103 -YLGSILVDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLKNHP--------------- 146
YL SI + S + G++ + Y + + G P
Sbjct: 229 DYLLSIPI-----SCPLIGVIQLAH------YVVTAKLLGF--TPGELRSYLKGATGHSQ 275
Query: 147 -----------DTVDD-----------LFRLCTRFLQRAPIAFLTSSFISSVMQCG---- 180
D+ + LF + R + P L S + ++
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 181 --ILA-THLDHREANSTVMKFFYDL-----IH-------NNRVLSDKDG----------- 214
+L+ ++L + V K L + N V+S G
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---GPPQSLYGLNLT 392
Query: 215 --KKKAVSEED------------FDMR--------H-RLMKDIVSKHGQALVSNL----- 246
K KA S D F R H L+ + LV N
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
Query: 247 --LQACVFSLHTY-------MMADVADVLYELISVDRQVSNQW 280
+Q V+ T+ + +++ + + I V +W
Sbjct: 453 KDIQIPVY--DTFDGSDLRVLSGSISERIVDCIIRLP-V--KW 490
Score = 43.9 bits (103), Expect = 7e-05
Identities = 45/284 (15%), Positives = 80/284 (28%), Gaps = 123/284 (43%)
Query: 79 AHLLEPLVKQIVVLYSKHPHSSFLYLGSILVDEYATSHCV-SGLLDMVQAFLP-PTYAIL 136
A+ PL H S + +LV S + S L + LP PT
Sbjct: 3 AYSTRPLTLS---------HGSLEH--VLLVP--TASFFIASQLQEQFNKILPEPTEGFA 49
Query: 137 QEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCG-------ILATHLDHR 189
+++ P T +L +FL ++SS+++ +L L
Sbjct: 50 ADDE-----PTTPAELV---GKFL----------GYVSSLVEPSKVGQFDQVLNLCLTE- 90
Query: 190 EANSTVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQA 249
F E + + DI H AL + LLQ
Sbjct: 91 ---------F---------------------ENCY-LEG---NDI---H--ALAAKLLQE 111
Query: 250 CVFSLHTYMMADVADVL---YELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIE 306
+ + +++ R ++ + K + + + A E +
Sbjct: 112 -----NDTTLVKTKELIKNYITA----RIMAKR-------PFDKKSNSALFRAVGEGNAQ 155
Query: 307 FHSQVTRSESAYDV--GQA-----LKELSRLYRKHMKYNYSYHH 343
+ GQ +EL LY+ +YH
Sbjct: 156 L----------VAIFGGQGNTDDYFEELRDLYQ-------TYHV 182
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 31.0 bits (71), Expect = 0.69
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 13/76 (17%)
Query: 260 ADVADVLYELISVDRQVSNQWLQDT------ISQLPKNTPAGMNAATPEQLIEFHSQVTR 313
DV + + + D I++ + + Q+I+ + V
Sbjct: 337 TDVLAFVEHFETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVME 396
Query: 314 SESAY-------DVGQ 322
+ D+G
Sbjct: 397 EAAEPGEGTIVSDIGF 412
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 30.6 bits (70), Expect = 0.72
Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 260 ADVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAY- 318
AD+ + L ++ + S Q + AG PE + + + + + Y
Sbjct: 316 ADIGAMASALANLVEESSRQLPTAAPEPAKVDQDAGR--LHPETVFDTLNDMAPENAIYL 373
Query: 319 -DVGQ 322
+
Sbjct: 374 NESTS 378
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.88
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Query: 273 DRQVSNQWLQDTISQL--PKNTPA-GMNAATPEQLIE 306
++Q + + LQ ++ +L + PA + A +E
Sbjct: 18 EKQ-ALKKLQASL-KLYADDSAPALAIKAT-----ME 47
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein
binding; 2.18A {Schizosaccharomyces pombe}
Length = 393
Score = 27.3 bits (59), Expect = 8.2
Identities = 16/136 (11%), Positives = 33/136 (24%), Gaps = 10/136 (7%)
Query: 134 AILQEEDGLKNHPDTVDDLFRLCTRFLQRAPIAFLTSSFISSVMQCGILATHLDHREANS 193
AI + + GL + L +L++ + S+
Sbjct: 151 AIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEESLAN----------IPVTQ 200
Query: 194 TVMKFFYDLIHNNRVLSDKDGKKKAVSEEDFDMRHRLMKDIVSKHGQALVSNLLQACVFS 253
V + I R L+ + D ++ + + G L
Sbjct: 201 LVNPYIEKAIQYLRPLAQDSTEYFDALTPDSLRPLYILSSYLFQFGDQFSEAFLLDVCSI 260
Query: 254 LHTYMMADVADVLYEL 269
+ + V D
Sbjct: 261 ITALWLKSVVDPNTPA 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.134 0.400
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,148,462
Number of extensions: 299618
Number of successful extensions: 796
Number of sequences better than 10.0: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 20
Length of query: 344
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 250
Effective length of database: 4,077,219
Effective search space: 1019304750
Effective search space used: 1019304750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)