RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12900
         (344 letters)



>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 122

 Score = 28.2 bits (63), Expect = 0.60
 Identities = 8/69 (11%), Positives = 20/69 (28%), Gaps = 6/69 (8%)

Query: 191 ANSTVMKFFYDLIHNNRVLSDKDGKKK----AVSEEDF--DMRHRLMKDIVSKHGQALVS 244
           ++ T+      L     +   K          + E+D         +  +     ++LV 
Sbjct: 37  SDKTIRTLITRLYKKEIIKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVL 96

Query: 245 NLLQACVFS 253
           N  +    +
Sbjct: 97  NFAKNEELN 105


>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 122

 Score = 26.7 bits (59), Expect = 2.4
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 191 ANSTVMKFFYDLIHNNRVLSDKDGKKK----AVSEEDFD---MRHRLMKDIVSKHGQALV 243
           A +TVM     L   N VL  +D +          ++     M   L +   S   QA +
Sbjct: 39  AYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAAL 98

Query: 244 SNLLQ 248
            + ++
Sbjct: 99  VHFVE 103


>d1i39a_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 200

 Score = 26.8 bits (58), Expect = 3.4
 Identities = 13/142 (9%), Positives = 39/142 (27%), Gaps = 1/142 (0%)

Query: 202 LIHNNRVLSDKDGKKKAVSEED-FDMRHRLMKDIVSKHGQALVSNLLQACVFSLHTYMMA 260
               +R+        K +S+    ++   + K   ++  +    NL +         ++ 
Sbjct: 24  CSDEDRLRKLGVKDSKKLSQGRREELAEEIRKICRTEVLKVSPENLDERMAAKTINEILK 83

Query: 261 DVADVLYELISVDRQVSNQWLQDTISQLPKNTPAGMNAATPEQLIEFHSQVTRSESAYDV 320
           +    +   +  +    +           +           E   +    +  + S    
Sbjct: 84  ECYAEIILRLKPEIAYVDSPDVIPERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAK 143

Query: 321 GQALKELSRLYRKHMKYNYSYH 342
            +  +E+ RL  K   +   Y 
Sbjct: 144 VEREREIERLKEKFGDFGSGYA 165


>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 25.5 bits (55), Expect = 9.8
 Identities = 21/165 (12%), Positives = 44/165 (26%), Gaps = 15/165 (9%)

Query: 49  TCETYQQDARVMEHSSRCLRYAIRCVGKDFAHLLEPLVKQIVVLYSKHPHSSFLYLGSIL 108
             +T    A   E  +  +      +   +    E  V++I    ++      L+   + 
Sbjct: 52  CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF-DKARQAAPCVLFFDELD 110

Query: 109 VDEYATSHCVSGLLDMVQAFLPPTYAILQEEDGLK-----------NHPDTVDDLFRLCT 157
               A    +          +     IL E DG+            N PD +D       
Sbjct: 111 SIAKARGGNIGDGGGAADRVIN---QILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPG 167

Query: 158 RFLQRAPIAFLTSSFISSVMQCGILATHLDHREANSTVMKFFYDL 202
           R  Q   I         ++++  +  + +        + K     
Sbjct: 168 RLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGF 212


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,233,113
Number of extensions: 55322
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 8
Length of query: 344
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 258
Effective length of database: 1,226,816
Effective search space: 316518528
Effective search space used: 316518528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.4 bits)