BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12903
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 248 bits (633), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 124/247 (50%), Positives = 179/247 (72%), Gaps = 11/247 (4%)
Query: 27 DDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLARKYSNLRRTR 85
D+ I+ Q I++EI+ LV ++ ++ VL ++Y D+ +Y+ K+KDL +KYS +R+TR
Sbjct: 155 DEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTR 214
Query: 86 PDGNCFFRSFGFALLESLYHLD-------FRLIAEKSKDKLLELGFQKFTLEDFHDQFME 138
PDGN F+R+FGF+ LE+L LD F+ ++ KSK+ L+ GF +FT+EDFH+ FM+
Sbjct: 215 PDGNSFYRAFGFSHLEAL--LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMD 272
Query: 139 VVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEF 198
++ + K +T+ L+ FN++ SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV EF
Sbjct: 273 LIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEF 331
Query: 199 CRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRP 258
C+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+ H FPE P+++LLYRP
Sbjct: 332 CQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRP 391
Query: 259 GHYDILY 265
GHYDILY
Sbjct: 392 GHYDILY 398
>pdb|2ZFY|A Chain A, Crystal Structure Of Human Otubain 1
Length = 234
Score = 244 bits (623), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/234 (51%), Positives = 172/234 (73%), Gaps = 11/234 (4%)
Query: 40 EISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFA 98
EI+ LV ++ ++ VL ++Y D+ +Y+ K+KDL +KYS +R+TRPDGNCF+R+FGF+
Sbjct: 3 EIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFS 62
Query: 99 LLESLYHLD-------FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNED 151
LE+L LD F+ ++ KSK+ L+ GF +FT+EDFH+ FM+++ + K +T+
Sbjct: 63 HLEAL--LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK-QTSVA 119
Query: 152 TLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESD 211
L+ FN++ SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV EFC+QEVEPM KESD
Sbjct: 120 DLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESD 179
Query: 212 HIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILY 265
HIHIIAL+ AL V ++V YMDRG+ H FPE P+++LLYRPGHYDILY
Sbjct: 180 HIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 233
>pdb|3VON|A Chain A, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|H Chain H, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|O Chain O, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|V Chain V, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|CC Chain c, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|JJ Chain j, Crystalstructure Of The Ubiquitin Protease
Length = 228
Score = 244 bits (622), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 169/227 (74%), Gaps = 11/227 (4%)
Query: 47 LVGDKEDIMVLEQQYIGDE-VYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH 105
LV ++ ++ VL ++Y D+ +Y+ K+KDL +KYS +R+TRPDGNCF+R+FGF+ LE+L
Sbjct: 4 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEAL-- 61
Query: 106 LD-------FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158
LD F+ ++ KSK+ L+ GF +FT+EDFH+ FM+++ + K +T+ L+ FN
Sbjct: 62 LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK-QTSVADLLASFN 120
Query: 159 NKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIAL 218
++ SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV EFC+QEVEPM KESDHIHIIAL
Sbjct: 121 DQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIAL 180
Query: 219 STALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILY 265
+ AL V ++V YMDRG+ H FPE P+++LLYRPGHYDILY
Sbjct: 181 AQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 227
>pdb|4I6L|A Chain A, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 229
Score = 239 bits (611), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 168/227 (74%), Gaps = 11/227 (4%)
Query: 47 LVGDKEDIMVLEQQYIGDE-VYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH 105
LV ++ ++ VL ++Y D+ +Y+ K+KDL +KYS +R+TRPDGN F+R+FGF+ LE+L
Sbjct: 5 LVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNSFYRAFGFSHLEAL-- 62
Query: 106 LD-------FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158
LD F+ ++ KSK+ L+ GF +FT+EDFH+ FM+++ + K +T+ L+ FN
Sbjct: 63 LDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK-QTSVADLLASFN 121
Query: 159 NKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIAL 218
++ SDY+VVYLRL+ SG LQ+++ F+++FIEG RTV EFC+QEVEPM KESDHIHIIAL
Sbjct: 122 DQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIAL 181
Query: 219 STALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILY 265
+ AL V ++V YMDRG+ H FPE P+++LLYRPGHYDILY
Sbjct: 182 AQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILY 228
>pdb|1TFF|A Chain A, Structure Of Otubain-2
Length = 234
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 141/228 (61%), Gaps = 7/228 (3%)
Query: 44 SIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESL 103
S L+ +K DI+ + + + + +Y+ K+++L+++++ +R+T+ D NCF+R+ G++ LESL
Sbjct: 5 SFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESL 64
Query: 104 YH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158
F+ ++ + LL GF++ +F + F VV L+ K + + +L++VFN
Sbjct: 65 LGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEK-DGSVSSLLKVFN 123
Query: 159 NKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIAL 218
++ SD++V +LRL+ S ++ ADF+++FI+ + +FC EVEP E DHI I AL
Sbjct: 124 DQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEXDIKDFCTHEVEPXATECDHIQITAL 183
Query: 219 STALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP 266
S AL + ++V Y+D D T H FPE P ++LLY+ HY+ILY
Sbjct: 184 SQALSIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILYA 230
>pdb|4DHZ|A Chain A, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 288
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 140/259 (54%), Gaps = 11/259 (4%)
Query: 18 SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGD--EVYKGKVKDLA 75
SE N + D+ I+ Q I++EI+ LV +L +Y + + K +L+
Sbjct: 18 SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVATLAPFSILCAEYDNETSAAFLSKATELS 77
Query: 76 RKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRL--IAEKSKD---KLLELGFQKFTLE 130
Y +R R DGNCF+R+ L+E + RL S+D L+ELGF +T
Sbjct: 78 EVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGFPDWTCT 137
Query: 131 DFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIE 190
DF D F+E + I E+ + + N+ ++Y++++ RLI S L+Q+++ Y FI+
Sbjct: 138 DFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAFLKQNSEEYAPFID 197
Query: 191 GNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAH-DFPEDK- 248
TV ++C QE+EPM+K++DH+ I +L A VR+ YMDR + H D P D
Sbjct: 198 EGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPSDDQ 257
Query: 249 --PPQIHLLYRPGHYDILY 265
P+I LLYRPGHYD++Y
Sbjct: 258 QIAPEITLLYRPGHYDVIY 276
>pdb|4DHI|B Chain B, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|A Chain A, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|E Chain E, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|I Chain I, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|L Chain L, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
Length = 284
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 148/272 (54%), Gaps = 16/272 (5%)
Query: 7 EPDQASFDKGYSEDANQVNQDDLILQ--QSKNIEKEISDSIMLVGDKEDIMVLEQQYIGD 64
EP Q S D G + +A V D+++LQ Q K IE E S+ LV +L +Y +
Sbjct: 4 EP-QKSDDNGQAAEA-VVTDDEIVLQDQQLKTIEDE-QKSVPLVATLAPFSILCAEYDNE 60
Query: 65 --EVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRL--IAEKSKD--- 117
+ K +L+ Y +R R DGNCF+R+ L+E + RL S+D
Sbjct: 61 TSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTR 120
Query: 118 KLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQ 177
L+ELGF +T DF D F+E + I E+ + + N+ ++Y++++ RLI S
Sbjct: 121 TLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAF 180
Query: 178 LQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDST 237
L+Q+++ Y FI+ TV ++C QE+EPM+K++DH+ I +L A VR+ YMDR +
Sbjct: 181 LKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAP 240
Query: 238 EAIAH-DFPEDK---PPQIHLLYRPGHYDILY 265
H D P D P+I LLYRPGHYD++Y
Sbjct: 241 NGGWHYDIPSDDQQIAPEITLLYRPGHYDVIY 272
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDYS L +I +G QQ+ + N ++ N +F+F + + K S H
Sbjct: 75 KIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI---IPNVVKYSPHCK 131
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 132 LLVVSNPVDILTYVAWKISG 151
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 174 ASGQLQQDADF--------YQNFIEGNRTVFEFCRQEVEPMFKESDHIH----IIALSTA 221
A G A+F Y ++ GNRT +E + EP++K +D ++ ++ + T
Sbjct: 199 ADGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTF 258
Query: 222 LDVG----VRVRYMDRGDS 236
D G +R+ RGDS
Sbjct: 259 PDTGKFGASTIRFGSRGDS 277
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 174 ASGQLQQDADF--------YQNFIEGNRTVFEFCRQEVEPMFKESDHIH----IIALSTA 221
A G A+F Y ++ GNRT +E + EP++K +D ++ ++ + T
Sbjct: 165 ADGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTF 224
Query: 222 LDVG----VRVRYMDRGDS 236
D G +R+ RGDS
Sbjct: 225 PDTGKFGASTIRFGSRGDS 243
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ NKDYS + ++ +G QQ+ + N ++ N VF+F + + K S +
Sbjct: 77 KIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFI---IPQIVKYSPNCI 133
Query: 215 IIALSTALDVGVRVRYMDRG 234
II +S +D+ V + G
Sbjct: 134 IIVVSNPVDILTYVAWKLSG 153
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDYS L +I +G QQ+ + N ++ N +F+F + + K S
Sbjct: 77 KIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFI---IPNIVKHSPDCI 133
Query: 215 IIALSTALDVGVRVRYMDRG 234
I+ +S +DV V + G
Sbjct: 134 ILVVSNPVDVLTYVAWKLSG 153
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDYS L +I +G QQ+ + N ++ N +F+F + + K S
Sbjct: 76 KIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFI---IPNIVKHSPDCI 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
I+ +S +DV V + G
Sbjct: 133 ILVVSNPVDVLTYVAWKLSG 152
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ ++KDYS L +I +G QQ+ + N ++ N +F+F + + K S
Sbjct: 75 KIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI---IPNVVKYSPQCK 131
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 132 LLIVSNPVDILTYVAWKISG 151
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ ++KDYS L +I +G QQ+ + N ++ N +F+F + + K S
Sbjct: 76 KIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI---IPNVVKYSPQCK 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 133 LLIVSNPVDILTYVAWKISG 152
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDY+ L +I +G QQ+ + N ++ N +F+F + + K S +
Sbjct: 76 KIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFI---IPNIVKYSPNCK 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 133 LLVVSNPVDILTYVAWKISG 152
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDY+ L +I +G QQ+ + N ++ N +F+F + + K S +
Sbjct: 75 KIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI---IPNVVKYSPNCK 131
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 132 LLIVSNPVDILTYVAWKISG 151
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDY+ L +I +G QQ+ + N ++ N +F+F + + K S +
Sbjct: 75 KIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI---IPNVVKYSPNCK 131
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 132 LLIVSNPVDILTYVAWKISG 151
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEF-----------CRQEV 203
++ + KDYS L +I +G QQ+ + N ++ N +F+F C +E+
Sbjct: 77 KIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKEL 136
Query: 204 EP 205
P
Sbjct: 137 HP 138
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ +KDYS + ++ +G QQ+ + N ++ N VF+F + + K S
Sbjct: 76 KIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFI---IPQIVKYSPDCI 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
II +S +D+ V + G
Sbjct: 133 IIVVSNPVDILTYVTWKLSG 152
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ +KDYS + ++ +G QQ+ + N ++ N VF+F + + K S
Sbjct: 76 KIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFI---IPQIVKYSPDCI 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
II +S +D+ V + G
Sbjct: 133 IIVVSNPVDILTYVTWKLSG 152
>pdb|3QWE|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Gem
Interacting Protein
Length = 279
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 179 QQDADFYQNFIEGNRTVFEFCRQEV-EPMFKESDHIH--IIALSTALDVGVRVRYMDRGD 235
QQ D+YQ + RT E R+E E KE ++ + AL A +++Y+ R +
Sbjct: 94 QQKRDYYQP-LAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRA-----QLQYVQRSE 147
Query: 236 STEAIAHDFPEDKPPQ 251
A + PED PQ
Sbjct: 148 DLRARSQGSPEDSAPQ 163
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ +KDYS + ++ +G QQ+ + N ++ N +F+F + + K S +
Sbjct: 76 KIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFI---IPNIIKYSPNCI 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 133 LLVVSNPVDILTYVAWKLSG 152
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ +KDYS + ++ +G QQ+ + N ++ N +F+F + + K S +
Sbjct: 75 KIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFI---IPNIVKYSPNCI 131
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 132 LMVVSNPVDILTYVAWKLSG 151
>pdb|2DO3|A Chain A, Solution Structure Of The Third Kow Motif Of Transcription
Elongation Factor Spt5
Length = 69
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 197 EFCRQEVEPMFKESDHIHIIALSTALDVGVRVR 229
EF QE+ FK DH+ +IA D G+ VR
Sbjct: 8 EFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVR 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,280,768
Number of Sequences: 62578
Number of extensions: 344176
Number of successful extensions: 999
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 28
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)