BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12903
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VL00|OTUBL_DROME Ubiquitin thioesterase otubain-like OS=Drosophila melanogaster
GN=CG4968 PE=2 SV=1
Length = 262
Score = 296 bits (757), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 144/255 (56%), Positives = 190/255 (74%), Gaps = 10/255 (3%)
Query: 22 NQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNL 81
N N+D+LI+QQ ++IEKEISD+ LV ++ + L +Y GDE++ K++DL++KY +
Sbjct: 7 NDGNRDELIIQQKRDIEKEISDTTPLVSEQLPLTCLYAEYSGDEIFTAKIQDLSKKYKFI 66
Query: 82 RRTRPDGNCFFRSFGFALLESLY-----HLDFRLIAEKSKDKLLELGFQKFTLEDFHDQF 136
RRTRPDGNCFFR+F ++ LE L + +F+ +AE+SK+KL++LGF FTLEDFH+ F
Sbjct: 67 RRTRPDGNCFFRAFAYSYLEYLISNTSAYQEFKKLAEESKEKLVQLGFPSFTLEDFHETF 126
Query: 137 MEVVNLISK-----PETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
MEV+ +S T +D L ++FN + YSDYVVVYLRLI SG+LQ++ADFYQNFIEG
Sbjct: 127 MEVIQRVSPDNAGGHSTVQDELHKIFNEQGYSDYVVVYLRLITSGKLQEEADFYQNFIEG 186
Query: 192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQ 251
+ T+ F EVEPM+KESDHIHIIAL TAL GVRV Y+DRG+ AHDFPE P+
Sbjct: 187 DLTIEAFRHLEVEPMYKESDHIHIIALCTALGAGVRVEYLDRGEGGTVKAHDFPEGSEPR 246
Query: 252 IHLLYRPGHYDILYP 266
I+L+YRPGHYDILYP
Sbjct: 247 IYLIYRPGHYDILYP 261
>sp|B2RYG6|OTUB1_RAT Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus GN=Otub1 PE=1
SV=1
Length = 271
Score = 256 bits (655), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 128/256 (50%), Positives = 184/256 (71%), Gaps = 11/256 (4%)
Query: 18 SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
SE N + D+ I+ Q I++EI+ LV ++ ++ VL ++Y D+ +Y+ K+KDL +
Sbjct: 18 SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77
Query: 77 KYSNLRRTRPDGNCFFRSFGFALLESLYHLD-------FRLIAEKSKDKLLELGFQKFTL 129
KYS +R+TRPDGNCF+R+FGF+ LE+L LD F+ ++ KSK+ L+ GF +FT+
Sbjct: 78 KYSYIRKTRPDGNCFYRAFGFSHLEAL--LDDSKELQRFKAVSAKSKEDLVSQGFTEFTI 135
Query: 130 EDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFI 189
EDFH+ FM+++ + K +T+ L+ FN++ SDY+VVYLRL+ SG LQ+++ F+++FI
Sbjct: 136 EDFHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFI 194
Query: 190 EGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKP 249
EG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+ H FPE
Sbjct: 195 EGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSE 254
Query: 250 PQIHLLYRPGHYDILY 265
P+++LLYRPGHYDILY
Sbjct: 255 PKVYLLYRPGHYDILY 270
>sp|Q7TQI3|OTUB1_MOUSE Ubiquitin thioesterase OTUB1 OS=Mus musculus GN=Otub1 PE=1 SV=2
Length = 271
Score = 256 bits (655), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 128/256 (50%), Positives = 184/256 (71%), Gaps = 11/256 (4%)
Query: 18 SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
SE N + D+ I+ Q I++EI+ LV ++ ++ VL ++Y D+ +Y+ K+KDL +
Sbjct: 18 SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77
Query: 77 KYSNLRRTRPDGNCFFRSFGFALLESLYHLD-------FRLIAEKSKDKLLELGFQKFTL 129
KYS +R+TRPDGNCF+R+FGF+ LE+L LD F+ ++ KSK+ L+ GF +FT+
Sbjct: 78 KYSYIRKTRPDGNCFYRAFGFSHLEAL--LDDSKELQRFKAVSAKSKEDLVSQGFTEFTI 135
Query: 130 EDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFI 189
EDFH+ FM+++ + K +T+ L+ FN++ SDY+VVYLRL+ SG LQ+++ F+++FI
Sbjct: 136 EDFHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFI 194
Query: 190 EGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKP 249
EG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+ H FPE
Sbjct: 195 EGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHVFPEGSE 254
Query: 250 PQIHLLYRPGHYDILY 265
P+++LLYRPGHYDILY
Sbjct: 255 PKVYLLYRPGHYDILY 270
>sp|Q96FW1|OTUB1_HUMAN Ubiquitin thioesterase OTUB1 OS=Homo sapiens GN=OTUB1 PE=1 SV=2
Length = 271
Score = 256 bits (655), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 128/256 (50%), Positives = 184/256 (71%), Gaps = 11/256 (4%)
Query: 18 SEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDE-VYKGKVKDLAR 76
SE N + D+ I+ Q I++EI+ LV ++ ++ VL ++Y D+ +Y+ K+KDL +
Sbjct: 18 SEGVNCLAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHK 77
Query: 77 KYSNLRRTRPDGNCFFRSFGFALLESLYHLD-------FRLIAEKSKDKLLELGFQKFTL 129
KYS +R+TRPDGNCF+R+FGF+ LE+L LD F+ ++ KSK+ L+ GF +FT+
Sbjct: 78 KYSYIRKTRPDGNCFYRAFGFSHLEAL--LDDSKELQRFKAVSAKSKEDLVSQGFTEFTI 135
Query: 130 EDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFI 189
EDFH+ FM+++ + K +T+ L+ FN++ SDY+VVYLRL+ SG LQ+++ F+++FI
Sbjct: 136 EDFHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFI 194
Query: 190 EGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKP 249
EG RTV EFC+QEVEPM KESDHIHIIAL+ AL V ++V YMDRG+ H FPE
Sbjct: 195 EGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSE 254
Query: 250 PQIHLLYRPGHYDILY 265
P+++LLYRPGHYDILY
Sbjct: 255 PKVYLLYRPGHYDILY 270
>sp|Q8LG98|OTUBL_ARATH Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana
GN=At1g28120 PE=2 SV=2
Length = 306
Score = 171 bits (432), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 144/263 (54%), Gaps = 27/263 (10%)
Query: 31 LQQSKNIEKEISDSIMLVGDKEDIMVLEQQY-IGDEVYKGKVKDLARKYSNLRRTRPDGN 89
++ + ++E + + VGDKE + L +Y G + K+K L +Y +RRTR DGN
Sbjct: 32 VEDQPSFQEEEAAKVPYVGDKEPLSSLAAEYQSGSPILLEKIKILDSQYIGIRRTRGDGN 91
Query: 90 CFFRSFGFALLESLYHLD-------FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNL 142
CFFRSF F+ LE + ++ EK + L LG+ FT EDF F+E ++
Sbjct: 92 CFFRSFMFSYLEHILESQDRAEVDRIKVNVEKCRKTLQNLGYTDFTFEDFFALFLEQLDD 151
Query: 143 I---SKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG--NRTVFE 197
I ++ + D LV ++ SDY+V++ R + +G ++ ADF++ FI G N TV +
Sbjct: 152 ILQGTEESISYDELVNRSRDQSVSDYIVMFFRFVTAGDIRTRADFFEPFITGLSNATVDQ 211
Query: 198 FCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIA----HDF--------- 244
FC+ VEPM +ESDHIHI ALS AL V +RV Y+DR HDF
Sbjct: 212 FCKSSVEPMGEESDHIHITALSDALGVAIRVVYLDRSSCDSGGVTVNHHDFVPVGITNEK 271
Query: 245 -PEDKPPQIHLLYRPGHYDILYP 266
E P I LLYRPGHYDILYP
Sbjct: 272 DEEASAPFITLLYRPGHYDILYP 294
>sp|Q9CQX0|OTUB2_MOUSE Ubiquitin thioesterase OTUB2 OS=Mus musculus GN=Otub2 PE=2 SV=1
Length = 234
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 146/228 (64%), Gaps = 7/228 (3%)
Query: 44 SIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESL 103
S L+ +K DI+ + + + + +Y+ K+++L+++++++R+T+ DGNCF+R+ G++ LESL
Sbjct: 5 SFNLISEKCDILSILRDHPENRIYQRKIQELSKRFTSIRKTKGDGNCFYRALGYSYLESL 64
Query: 104 YH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158
L F+ ++ + LL GF++ +F + F VV L+ K +++ +L++VFN
Sbjct: 65 LGKSREILKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEK-DSSVSSLLKVFN 123
Query: 159 NKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIAL 218
++ SD +V +LRL+ S ++ ADF+++FI+ + +FC EVEPM E DH+ I AL
Sbjct: 124 DQSSSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMAMECDHVQITAL 183
Query: 219 STALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP 266
S AL++ ++V Y+D D T H FPE P ++LLY+ HY+ILY
Sbjct: 184 SQALNIALQVEYVDEMD-TALNHHVFPEAAIPSVYLLYKTSHYNILYA 230
>sp|Q96DC9|OTUB2_HUMAN Ubiquitin thioesterase OTUB2 OS=Homo sapiens GN=OTUB2 PE=1 SV=2
Length = 234
Score = 164 bits (416), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 143/228 (62%), Gaps = 7/228 (3%)
Query: 44 SIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESL 103
S L+ +K DI+ + + + + +Y+ K+++L+++++ +R+T+ DGNCF+R+ G++ LESL
Sbjct: 5 SFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESL 64
Query: 104 YH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158
F+ ++ + LL GF++ +F + F VV L+ K + + +L++VFN
Sbjct: 65 LGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEK-DGSVSSLLKVFN 123
Query: 159 NKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIAL 218
++ SD++V +LRL+ S ++ ADF+++FI+ + +FC EVEPM E DHI I AL
Sbjct: 124 DQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITAL 183
Query: 219 STALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP 266
S AL + ++V Y+D D T H FPE P ++LLY+ HY+ILY
Sbjct: 184 SQALSIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILYA 230
>sp|Q9XVR6|OTUBL_CAEEL Ubiquitin thioesterase otubain-like OS=Caenorhabditis elegans
GN=otub-1 PE=1 SV=1
Length = 284
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 148/272 (54%), Gaps = 16/272 (5%)
Query: 7 EPDQASFDKGYSEDANQVNQDDLILQ--QSKNIEKEISDSIMLVGDKEDIMVLEQQYIGD 64
EP Q S D G + +A V D+++LQ Q K IE E S+ LV +L +Y +
Sbjct: 4 EP-QKSDDNGQAAEA-VVTDDEIVLQDQQLKTIEDE-QKSVPLVATLAPFSILCAEYDNE 60
Query: 65 --EVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRL--IAEKSKD--- 117
+ K +L+ Y +R R DGNCF+R+ L+E + RL S+D
Sbjct: 61 TSAAFLSKATELSEVYGEIRYIRGDGNCFYRAILVGLIEIMLKDRARLEKFIASSRDWTR 120
Query: 118 KLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQ 177
L+ELGF +T DF D F+E + I E+ + + N+ ++Y++++ RLI S
Sbjct: 121 TLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYILMFFRLITSAF 180
Query: 178 LQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDST 237
L+Q+++ Y FI+ TV ++C QE+EPM+K++DH+ I +L A VR+ YMDR +
Sbjct: 181 LKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAP 240
Query: 238 EAIAH-DFPEDK---PPQIHLLYRPGHYDILY 265
H D P D P+I LLYRPGHYD++Y
Sbjct: 241 NGGWHYDIPSDDQQIAPEITLLYRPGHYDVIY 272
>sp|A8XDJ2|OTUBL_CAEBR Ubiquitin thioesterase otubain-like OS=Caenorhabditis briggsae
GN=otub-1 PE=3 SV=1
Length = 288
Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 147/257 (57%), Gaps = 16/257 (6%)
Query: 24 VNQDDLILQ--QSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEV--YKGKVKDLARKYS 79
+D+LILQ Q K IE E S LVG+K L Y + + K +LA+ YS
Sbjct: 18 TTEDELILQDQQMKRIEDEQKAS-PLVGEKMPCATLVSLYDQETAPAFFEKANELAKVYS 76
Query: 80 NLRRTRPDGNCFFRSFGFALLESLYHLDFRLI-----AEKSKDKLLELGFQKFTLEDFHD 134
++R R DGNCF R+ L+E L + RL+ ++ ++L++LGF +T DF +
Sbjct: 77 HIRFIRGDGNCFIRAIQVGLVEILLNDKERLVKFIASCKEWTERLVKLGFPDWTCTDFCE 136
Query: 135 QFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRT 194
F+E + + ++ + +FN+ + ++Y++++ RLI SG L++ A Y+ F++ +
Sbjct: 137 FFIEFIEKVRDGIHQKEDVFRIFNDDNTANYLLMFFRLITSGYLKEHAAEYEPFLDEGMS 196
Query: 195 VFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTE-AIAHDFPEDK----- 248
+ ++C E+E M+KESDH+ IIAL AL++ +R+ YMDR + H+ P+
Sbjct: 197 LAQYCETEIEAMWKESDHLGIIALVRALNIRIRIEYMDRNAAPNGGTHHNLPDGHDNATF 256
Query: 249 PPQIHLLYRPGHYDILY 265
P I LLYRPGHYD++Y
Sbjct: 257 TPDITLLYRPGHYDLIY 273
>sp|Q9W7L3|LDHA_PYTRG L-lactate dehydrogenase A chain OS=Python regius GN=LDHA PE=2 SV=3
Length = 332
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDY+ L +I +G QQ+ +F N ++ N +F+F + + K S H
Sbjct: 76 KIVSGKDYAVTAHSKLVIITAGARQQEGEFRLNLVQRNVNIFKFI---IPNVVKYSPHCK 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 133 LLVVSNPVDILTYVAWKISG 152
>sp|Q9Z868|Y483_CHLPN Uncharacterized protein CPn_0483/CP_0271/CPj0483/CpB0503
OS=Chlamydia pneumoniae GN=CPn_0483 PE=4 SV=2
Length = 1043
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 87 DGNCFFRSFGFALLESLYHLDFR--LIAEKSKDKLLELGFQKFTL--EDFHDQFMEVVNL 142
DGNCF+R++ L +LY R ++ E+ +LL+L F + + + E++ L
Sbjct: 263 DGNCFYRAYAVGWLSALYEESSRNDIVFEQEATRLLDLPFASSSPANANLCAEMAELLQL 322
Query: 143 ISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQ 180
S + D V ++ ++ ++ +LR +++ ++Q
Sbjct: 323 CSTYCSFIDLYDGVILSQKHTATLIAFLRKLSAYAIRQ 360
>sp|P13491|LDHA_RABIT L-lactate dehydrogenase A chain OS=Oryctolagus cuniculus GN=LDHA
PE=1 SV=3
Length = 332
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDYS L +I +G QQ+ + N ++ N +F+F + + K S H
Sbjct: 76 KIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI---IPNVVKYSPHCK 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 133 LLVVSNPVDILTYVAWKISG 152
>sp|O59806|YJV8_SCHPO Uncharacterized N-acetyltransferase C550.08 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.08 PE=3 SV=1
Length = 247
Score = 34.3 bits (77), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 132 FHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191
F ++F+ ++N DT +V +D + +VY + +Q + + IE
Sbjct: 106 FFNEFLPILN---------DTKADVLKERDDHSWYLVY---VGVSSKEQGKGYLRKLIE- 152
Query: 192 NRTVFEFCRQEVEPMFKESDHIH 214
+F C QE P++ ES H+H
Sbjct: 153 --PIFNICDQEGLPIYLESSHLH 173
>sp|P32906|MNS1_YEAST Endoplasmic reticulum mannosyl-oligosaccharide
1,2-alpha-mannosidase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MNS1 PE=1 SV=1
Length = 549
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 174 ASGQLQQDADF--------YQNFIEGNRTVFEFCRQEVEPMFKESDHIH----IIALSTA 221
A G A+F Y ++ GNRT +E + EP++K +D ++ ++ + T
Sbjct: 198 ADGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTF 257
Query: 222 LDVG----VRVRYMDRGDS 236
D G +R+ RGDS
Sbjct: 258 PDTGKFGASTIRFGSRGDS 276
>sp|P06151|LDHA_MOUSE L-lactate dehydrogenase A chain OS=Mus musculus GN=Ldha PE=1 SV=3
Length = 332
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ ++KDY L +I +G QQ+ + N ++ N +F+F + + K S H
Sbjct: 76 KIVSSKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI---IPNIVKYSPHCK 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 133 LLIVSNPVDILTYVAWKISG 152
>sp|Q8WN22|PRKDC_CANFA DNA-dependent protein kinase catalytic subunit OS=Canis familiaris
GN=PRKDC PE=2 SV=1
Length = 4144
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 13/67 (19%)
Query: 40 EISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFAL 99
E+S S +L+ +I+ EQQ++ +E+++ K +ARK S + + AL
Sbjct: 1764 ELSQSPVLLQLMAEILCREQQHVMEELFQSTFKKIARKSSCVTQ-------------LAL 1810
Query: 100 LESLYHL 106
LES+Y +
Sbjct: 1811 LESVYRM 1817
>sp|Q9BE24|LDHA_MACFA L-lactate dehydrogenase A chain OS=Macaca fascicularis GN=LDHA PE=2
SV=4
Length = 332
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDYS L +I +G QQ+ + N ++ N +F+F V + K S +
Sbjct: 76 KIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI---VPNVVKYSPNCK 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 133 LLIVSNPVDILTYVAWKISG 152
>sp|P00341|LDHA_SQUAC L-lactate dehydrogenase A chain OS=Squalus acanthias GN=ldha PE=1
SV=4
Length = 333
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDYS L +I +G QQ+ + N ++ N +F+F + + K S
Sbjct: 77 KIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFI---IPDIVKHSPDCI 133
Query: 215 IIALSTALDVGVRVRYMDRG 234
I+ +S +DV V + G
Sbjct: 134 ILVVSNPVDVLTYVAWKLSG 153
>sp|Q9PW06|LDHA_ALLMI L-lactate dehydrogenase A chain OS=Alligator mississippiensis
GN=LDHA PE=2 SV=3
Length = 332
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDYS L +I +G QQ+ + N ++ N +F+F + + K S
Sbjct: 76 KIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI---IPNVVKHSPDCK 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 133 LLVVSNPVDIWTYVAWKISG 152
>sp|P48525|SYEM_YEAST Glutamate--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSE1 PE=1 SV=2
Length = 536
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 100 LESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNN 159
LES+Y+ + EK LL G + DFHD+F KP+ N++ V F +
Sbjct: 392 LESIYNTS-TISREKVAKILLNCGGSLSRINDFHDEF---YYFFEKPKYNDNDAVTKFLS 447
Query: 160 KDYSDYVVVYLRLIASGQLQQDADFYQNFIE 190
K+ S ++ L+ + Q DA ++ +E
Sbjct: 448 KNESRHIAHLLKKLGQFQEGTDAQEVESMVE 478
>sp|Q9C0H6|KLHL4_HUMAN Kelch-like protein 4 OS=Homo sapiens GN=KLHL4 PE=1 SV=2
Length = 718
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)
Query: 1 MADDNIEPDQASFDKGYSEDANQ---------VNQDDLILQQSKNI--EKEISDSIMLVG 49
MADDNIE A D +SED N +N + L++ +N EK++ D +++ G
Sbjct: 130 MADDNIEDSTARLDTQHSEDMNATRSEEQFHVINHAEQTLRKMENYLKEKQLCDVLLIAG 189
>sp|Q7M8C4|HTPG_WOLSU Chaperone protein HtpG OS=Wolinella succinogenes (strain ATCC 29543
/ DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=htpG
PE=3 SV=1
Length = 618
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 56 VLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKS 115
+L+Q I + K + + NL + FF+ FG AL E LY DF ++
Sbjct: 333 ILQQNRILANIKSASTKKILAEIENLAKDEEKYEAFFKEFGRALKEGLYG-DF-----EN 386
Query: 116 KDKLLEL 122
K+KLLEL
Sbjct: 387 KEKLLEL 393
>sp|Q52071|NIFW_ENTAG Nitrogenase-stabilizing/protective protein NifW OS=Enterobacter
agglomerans GN=nifW PE=3 SV=1
Length = 112
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 189 IEGNRTVFEFCRQEVEPMFKESDHIHIIA-LSTALDVGVRVRYMDRGDSTEA 239
+E ++ F+F EV+P+ S H+HI+A + L V V ++D +S A
Sbjct: 13 LESAQSFFDFFELEVDPVLLRSRHLHIMAQFNQRLTAAVPVHFVDEEESDRA 64
>sp|Q98SL2|LDHA_CAICA L-lactate dehydrogenase A chain OS=Caiman crocodilus apaporiensis
GN=LDHA PE=2 SV=3
Length = 332
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 155 EVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIH 214
++ + KDYS L +I +G QQ+ + N ++ N +F+F + + K S
Sbjct: 76 KIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFI---IPNVVKHSPDCK 132
Query: 215 IIALSTALDVGVRVRYMDRG 234
++ +S +D+ V + G
Sbjct: 133 LLVVSNPVDILTYVAWKISG 152
>sp|Q5XC58|GYRA_STRP6 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=gyrA PE=3 SV=1
Length = 828
Score = 31.2 bits (69), Expect = 7.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 33 QSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRT 84
+ I+ E D + L+ D DI+ ++ I + K ++ ++ RKY+N RRT
Sbjct: 433 ERDKIQSEYDDLLALIADLSDILAKPERII--TIIKEEMDEIKRKYANPRRT 482
>sp|Q8P116|GYRA_STRP8 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=gyrA PE=3 SV=1
Length = 828
Score = 31.2 bits (69), Expect = 7.6, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 33 QSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRT 84
+ I+ E D + L+ D DI+ ++ I + K ++ ++ RKY+N RRT
Sbjct: 433 ERDKIQSEYDDLLALIADLSDILAKPERII--TIIKEEMDEIKRKYANPRRT 482
>sp|Q9L7Q5|GYRA_STRP1 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M1 GN=gyrA
PE=3 SV=1
Length = 828
Score = 31.2 bits (69), Expect = 7.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 33 QSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRT 84
+ I+ E D + L+ D DI+ ++ I + K ++ ++ RKY+N RRT
Sbjct: 433 ERDKIQSEYDDLLALIADLSDILAKPERII--TIIKEEMDEIKRKYANPRRT 482
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,234,736
Number of Sequences: 539616
Number of extensions: 4369915
Number of successful extensions: 12888
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 12855
Number of HSP's gapped (non-prelim): 61
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)