Query psy12903
Match_columns 267
No_of_seqs 170 out of 446
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 22:42:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3991|consensus 100.0 3.1E-79 6.7E-84 532.7 23.7 244 23-267 8-256 (256)
2 PF10275 Peptidase_C65: Peptid 100.0 7.4E-70 1.6E-74 488.6 20.2 227 40-266 1-244 (244)
3 KOG2606|consensus 99.7 8.1E-18 1.8E-22 152.7 11.4 136 66-266 145-297 (302)
4 PF02338 OTU: OTU-like cystein 99.5 4.9E-14 1.1E-18 112.7 6.5 83 168-261 27-121 (121)
5 COG5539 Predicted cysteine pro 98.7 3E-09 6.5E-14 97.0 1.8 203 55-265 16-230 (306)
6 KOG3288|consensus 98.3 8E-07 1.7E-11 80.0 5.4 92 168-266 139-232 (307)
7 COG5539 Predicted cysteine pro 97.1 0.00032 6.9E-09 64.5 2.9 91 168-264 204-304 (306)
8 KOG2605|consensus 94.1 0.07 1.5E-06 51.3 4.8 50 169-221 247-296 (371)
9 PF05412 Peptidase_C33: Equine 55.4 7.4 0.00016 31.1 1.5 12 85-96 5-16 (108)
10 TIGR01597 PYST-B Plasmodium yo 47.9 38 0.00083 30.8 5.0 45 125-183 53-97 (255)
11 PF02671 PAH: Paired amphipath 35.6 86 0.0019 20.5 4.2 22 133-154 4-25 (47)
12 PRK06749 replicative DNA helic 34.0 57 0.0012 31.9 4.3 48 215-262 332-389 (428)
13 PRK09784 hypothetical protein; 28.8 62 0.0013 29.9 3.3 17 80-96 201-217 (417)
14 PF04904 NCD1: NAB conserved r 28.3 24 0.00051 26.7 0.5 44 183-232 23-67 (82)
15 PF03338 Pox_J1: Poxvirus J1 p 26.3 3.7E+02 0.0079 22.7 7.1 16 110-125 46-61 (145)
16 PRK08506 replicative DNA helic 24.2 1.1E+02 0.0023 30.4 4.4 49 214-262 333-391 (472)
17 PRK06321 replicative DNA helic 23.0 96 0.0021 30.8 3.8 48 215-262 371-428 (472)
18 PLN03229 acetyl-coenzyme A car 22.8 74 0.0016 33.6 3.0 66 12-77 446-519 (762)
19 PF02526 GBP_repeat: Glycophor 22.4 1.2E+02 0.0027 19.3 2.8 24 53-76 5-28 (38)
20 COG4066 Uncharacterized protei 22.3 90 0.002 26.6 2.9 19 77-95 123-141 (165)
21 PRK08760 replicative DNA helic 22.1 1.1E+02 0.0024 30.3 4.0 49 214-262 370-428 (476)
22 PRK07004 replicative DNA helic 22.0 1E+02 0.0022 30.4 3.8 49 214-262 355-413 (460)
23 KOG0662|consensus 22.0 71 0.0015 28.5 2.3 13 217-229 146-158 (292)
24 PF09592 DUF2031: Protein of u 21.6 1.6E+02 0.0034 26.6 4.4 45 125-183 52-96 (228)
25 PF04844 Ovate: Transcriptiona 20.9 2.9E+02 0.0063 19.7 4.9 16 128-143 4-19 (59)
26 TIGR02404 trehalos_R_Bsub treh 20.6 2.6E+02 0.0056 24.3 5.7 55 34-89 6-62 (233)
27 COG4805 Uncharacterized protei 20.3 5.7E+02 0.012 26.3 8.5 125 28-155 186-341 (588)
28 KOG0403|consensus 20.2 3.9E+02 0.0085 27.1 7.2 81 52-145 346-429 (645)
29 PRK00977 exodeoxyribonuclease 20.0 2E+02 0.0044 21.5 4.2 34 125-158 8-41 (80)
No 1
>KOG3991|consensus
Probab=100.00 E-value=3.1e-79 Score=532.66 Aligned_cols=244 Identities=49% Similarity=0.883 Sum_probs=238.0
Q ss_pred CCCchHHHHHHHHHHHHHhhccCCCcccccchHHHHHhccCChHHHHHHHHHHHhcccceeccCCCcchhHHHHHHHHHH
Q psy12903 23 QVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLES 102 (267)
Q Consensus 23 ~~~~de~~~~q~~~i~~e~~~~~plV~~~~~l~~L~~eY~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ 102 (267)
+...||.|++|+.+|++|++++.||||++.|++.|.+||.++++|.+||+.|.++|..||++|||||||||||+|+|+|.
T Consensus 8 ~~v~de~~~~~q~~~~~e~~~~~plvse~~~~s~l~~eY~~d~iy~~KIq~Lsk~Y~~iR~trgDGNCfyra~~~s~lE~ 87 (256)
T KOG3991|consen 8 EAVDDEIILQDQLKIQEEESKTNPLVSEKAPLSSLYAEYFGDPIYTTKIQELSKKYTVIRKTRGDGNCFYRAFAYSYLEL 87 (256)
T ss_pred ccccchhhhhchHHHHHHHhhcCccccccccHHHHHHHhcCChHHHHHHHHHHHHhhhhheecCCCceehHHHHHHHHHH
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-----hHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHH
Q psy12903 103 LYH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQ 177 (267)
Q Consensus 103 ll~-----~~~~~~v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~ 177 (267)
|+. .+|+..+.++++.|..+||++|+++||++.|+++|++|. ++.+.++|++.|||+..|+|||+|||++||++
T Consensus 88 ll~d~~~l~~fka~~~kt~~~L~~~gf~e~t~~dFh~~Fievle~v~-~g~sv~~l~~~~ndq~ssdyiV~ylRLvtS~~ 166 (256)
T KOG3991|consen 88 LLLDRAELQKFKAAVEKTKETLVLLGFPEFTFEDFHDTFIEVLEDVE-GGTSVDELLKIFNDQSSSDYIVMYLRLVTSGF 166 (256)
T ss_pred HHhchHHHHHHHHHHHhhhHHHHHcCCCccchhhHHHHHHHHHHHHc-CCccHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 999 789999999999999999999999999999999999998 66899999999999999999999999999999
Q ss_pred HhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEEEEec
Q psy12903 178 LQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYR 257 (267)
Q Consensus 178 i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~LLYr 257 (267)
||+|+|+|+|||++++|+.+||.++|+||++++|||+|.|||+||++.|+|+|+|++.+..+++|+||+++.|.|+||||
T Consensus 167 ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe~s~P~I~LLYr 246 (256)
T KOG3991|consen 167 IKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPEASAPEIYLLYR 246 (256)
T ss_pred HhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCccccCceEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCccccccC
Q psy12903 258 PGHYDILYPL 267 (267)
Q Consensus 258 pGHYDILY~~ 267 (267)
||||||||||
T Consensus 247 pGHYdilY~~ 256 (256)
T KOG3991|consen 247 PGHYDILYKK 256 (256)
T ss_pred CCccccccCC
Confidence 9999999997
No 2
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=100.00 E-value=7.4e-70 Score=488.59 Aligned_cols=227 Identities=48% Similarity=0.856 Sum_probs=198.7
Q ss_pred HhhccCCCcccccchHHHHHhccC-ChHHHHHHHHHHHhcccceeccCCCcchhHHHHHHHHHHHHh-------hHHHHH
Q psy12903 40 EISDSIMLVGDKEDIMVLEQQYIG-DEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH-------LDFRLI 111 (267)
Q Consensus 40 e~~~~~plV~~~~~l~~L~~eY~~-~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~-------~~~~~~ 111 (267)
|++++.||||+++|++.|.+||++ +++|++|++.|.++|+++||||||||||||||+|+|||+|+. ++|++.
T Consensus 1 ~~~~~~plv~~~~~~~~L~~ey~~~~~~~~~ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~~~~~~~~~~~~~~ 80 (244)
T PF10275_consen 1 EEEAQYPLVGEKEPLSALVKEYSDNDPIFQKKIKKLSQKYSGIRRVRGDGNCFYRAFGFSYLEQLLESPDDQEFERFLAR 80 (244)
T ss_dssp -HHCCS-SB---EETCHHHHCTTTTCHHHHHHHHHHHHHEEEEE-B-SSSTHHHHHHHHHHHHHHTT-HH--HHHHHHHH
T ss_pred CccccCCCCCCcccHHHHHHHHhccCHHHHHHHHHHHhhhhheEeecCCccHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456889999999999999999995 999999999999999999999999999999999999999998 578888
Q ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHH---HHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhcc
Q psy12903 112 AEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNED---TLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNF 188 (267)
Q Consensus 112 v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~---~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pF 188 (267)
+++++..|...||++++++||+++|+++|++|+++..+.. .|++.||+++.|+|+|+|||++||+||+.|+++|+||
T Consensus 81 i~~~~~~l~~~~~~~~~~~~f~~~f~~~l~~i~~~~~~~~~~~~l~~~f~~~~~s~~iV~flRLlts~~l~~~~d~y~~f 160 (244)
T PF10275_consen 81 IKSLKFKLEAFGYDEEIFEDFYDEFLELLEKIANGESNSQRQEELLEAFNDEEISDYIVIFLRLLTSAYLKSNSDEYEPF 160 (244)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHCTSSHHH---HHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHhCcCcccHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 9999999999999999999999999999999985544333 9999999999999999999999999999999999999
Q ss_pred ccCC--CCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCC-CCCccceecCC---CCCCCeEEEEecCCCcc
Q psy12903 189 IEGN--RTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRG-DSTEAIAHDFP---EDKPPQIHLLYRPGHYD 262 (267)
Q Consensus 189 i~~~--~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~-~~~~v~~~~f~---e~~~p~I~LLYrpGHYD 262 (267)
+++. +++++||+++|+||++|+||++|+|||+||+++|+|+|+|++ .+..++.|.|| +++.|.|+|||||||||
T Consensus 161 i~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~~~~~~~~i~LLyrpgHYd 240 (244)
T PF10275_consen 161 IDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPDNESQEPQITLLYRPGHYD 240 (244)
T ss_dssp SSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-SSTTSS-SEEEEEETBEEE
T ss_pred hcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCccCCCCCEEEEEEcCCccc
Confidence 9986 899999999999999999999999999999999999999998 78899999997 45789999999999999
Q ss_pred cccc
Q psy12903 263 ILYP 266 (267)
Q Consensus 263 ILY~ 266 (267)
||||
T Consensus 241 Ily~ 244 (244)
T PF10275_consen 241 ILYP 244 (244)
T ss_dssp EEEE
T ss_pred cccC
Confidence 9997
No 3
>KOG2606|consensus
Probab=99.75 E-value=8.1e-18 Score=152.70 Aligned_cols=136 Identities=21% Similarity=0.331 Sum_probs=104.0
Q ss_pred HHHHHH-HHHHHhcccceeccCCCcchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhC
Q psy12903 66 VYKGKV-KDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLIS 144 (267)
Q Consensus 66 ~~~~Ki-~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~~~~~~~v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~ 144 (267)
+=.+|+ +.|...-...--|..||+|.|+|+. ++|.--+-...
T Consensus 145 ~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~--------------------hQL~~~~~~~~----------------- 187 (302)
T KOG2606|consen 145 MEKEKLAQILEERGLKMFDIPADGHCLYAAIS--------------------HQLKLRSGKLL----------------- 187 (302)
T ss_pred hHHHHHHHHHHhccCccccCCCCchhhHHHHH--------------------HHHHhccCCCC-----------------
Confidence 444566 5666777888899999999999999 66644332222
Q ss_pred CCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccCC--------CCHHHHHhhhcccccccchHHHHH
Q psy12903 145 KPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGN--------RTVFEFCRQEVEPMFKESDHIHII 216 (267)
Q Consensus 145 ~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~~--------~~~~~yC~~~Ve~~~~e~d~i~I~ 216 (267)
.|.-||..++.||++|.++|.||+.++ .++++||.+ |+-+++|||+++|.
T Consensus 188 ---------------------~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~~~~f~~Yc~e-I~~t~~WGgelEL~ 245 (302)
T KOG2606|consen 188 ---------------------SVQKLREETADYMREHVEDFLPFLLDEETGDSLGPEDFDKYCRE-IRNTAAWGGELELK 245 (302)
T ss_pred ---------------------cHHHHHHHHHHHHHHHHHHhhhHhcCccccccCCHHHHHHHHHH-hhhhccccchHHHH
Confidence 346899999999999999999999652 249999985 77789999999999
Q ss_pred HHHHhcCCcEEEEEccCCCCCccceecCC-CCCC-CeEEEEe-cC----C-Ccccccc
Q psy12903 217 ALSTALDVGVRVRYMDRGDSTEAIAHDFP-EDKP-PQIHLLY-RP----G-HYDILYP 266 (267)
Q Consensus 217 ALs~aL~v~I~V~~ld~~~~~~v~~~~f~-e~~~-p~I~LLY-rp----G-HYDILY~ 266 (267)
|||.+|++||+|++.|++. +.|. +.+. +.|.|+| |+ | ||+.+-|
T Consensus 246 AlShvL~~PI~Vy~~~~p~------~~~geey~kd~pL~lvY~rH~y~LGeHYNS~~~ 297 (302)
T KOG2606|consen 246 ALSHVLQVPIEVYQADGPI------LEYGEEYGKDKPLILVYHRHAYGLGEHYNSVTP 297 (302)
T ss_pred HHHHhhccCeEEeecCCCc------eeechhhCCCCCeeeehHHhHHHHHhhhccccc
Confidence 9999999999999888763 2333 3233 5688888 54 2 8887643
No 4
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.49 E-value=4.9e-14 Score=112.69 Aligned_cols=83 Identities=25% Similarity=0.392 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHh-cCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceec---
Q psy12903 168 VYLRLIASGQLQ-QDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHD--- 243 (267)
Q Consensus 168 ~~LR~lts~~i~-~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~--- 243 (267)
..||..+..||+ .|++.|.+|+.+. .+...++||++++|.|+|..|+++|.|+..... .......
T Consensus 27 ~~lR~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~--~~~~~~~~~~ 95 (121)
T PF02338_consen 27 QELRKAVVDYLRDKNRDKFEEFLEGD---------KMSKPGTWGGEIELQALANVLNRPIIVYSSSDG--DNVVFIKFTG 95 (121)
T ss_dssp HHHHHHHHHHHHTHTTTHHHHHHHHH---------HHTSTTSHEEHHHHHHHHHHHTSEEEEECETTT--BEEEEEEESC
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhh---------hhccccccCcHHHHHHHHHHhCCeEEEEEcCCC--CccceeeecC
Confidence 578999999999 9999999999752 477899999999999999999999999655322 2111111
Q ss_pred --CCCCCCCeEEEEec------CCCc
Q psy12903 244 --FPEDKPPQIHLLYR------PGHY 261 (267)
Q Consensus 244 --f~e~~~p~I~LLYr------pGHY 261 (267)
-+....+.++|+|. .+||
T Consensus 96 ~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 96 KYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp EESTTTTTTSEEEEEETEEEEETTEE
T ss_pred ccccCCCCCeEEEEEcCCccCCCCCC
Confidence 12345677888886 5798
No 5
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=3e-09 Score=96.96 Aligned_cols=203 Identities=16% Similarity=0.202 Sum_probs=124.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcccceeccC-CCcchhHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHcCCCcc
Q psy12903 55 MVLEQQYIGDEVYKGKVKDLARKYSNLRRTRP-DGNCFFRSFGFALLESLYHLDFRLIAEKSKD------KLLELGFQKF 127 (267)
Q Consensus 55 ~~L~~eY~~~~~~~~Ki~~L~~~y~~~R~vRG-DGNCFYRAf~F~ylE~ll~~~~~~~v~~~~~------~L~~~g~~~~ 127 (267)
+.+.+.|.+++.++.||.-+.+++...|+-.+ +|+|-+-+.+-+-...+...+....-..+.+ ......+++-
T Consensus 16 ~lt~kq~~e~~dlq~kI~~~~kql~~g~~~qrl~~k~~~ls~~ls~~~e~~i~k~~~~~~et~ea~q~~~l~~~q~~~~~ 95 (306)
T COG5539 16 SLTEKQRFELKDLQTKITRIMKQLTFGRPPQRLNGKCLDLSYALSQKDEVEIEKAPKLRAETNEADQEDSLTPLQNIPEL 95 (306)
T ss_pred HHHhhhhcccHHHHHHHHHHHHHHHccCchhhhccccchHHHHhhhhHHHHhhhhhhhcchhhccCCCccCCCcccCCcc
Confidence 45667888889999999999999887776554 9999998887554333322111110000000 0000111222
Q ss_pred cHHHHHHH----HHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhc
Q psy12903 128 TLEDFHDQ----FMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEV 203 (267)
Q Consensus 128 ~~edF~~~----f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~V 203 (267)
++.-|... ++.+++... +.....-|.+.- -...-+..|..||..+|..+.+|+|.|.+.+.+ .+.-.||..-|
T Consensus 96 ~iss~e~s~~qq~~nv~ed~p-~~~d~srl~q~~-~~~l~~asv~~lrE~vs~Ev~snPDl~n~~i~~-~~~i~y~~~i~ 172 (306)
T COG5539 96 GISSFEKSVSQQSINVLEDMP-GQDDNSRLFQAE-RYSLRDASVAKLREVVSLEVLSNPDLYNPAILE-IDVIAYATWIV 172 (306)
T ss_pred ccccCcccccccccchhccCC-CCCchHHHHHHH-HhhhhhhhHHHHHHHHHHHHhhCccccchhhcC-cchHHHHHhhh
Confidence 12112111 233332222 110011111100 011223478999999999999999999999987 57889999754
Q ss_pred ccccccc-hHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEEEEecCCCccccc
Q psy12903 204 EPMFKES-DHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILY 265 (267)
Q Consensus 204 e~~~~e~-d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~LLYrpGHYDILY 265 (267)
.+..|+ |+++|.+||..|++.|.|+-+|.+.....+.+ .....+..+|.++|||-.+
T Consensus 173 -k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~----~~~q~~~i~f~g~hfD~~t 230 (306)
T COG5539 173 -KPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSH----PYVQRISILFTGIHFDEET 230 (306)
T ss_pred -ccccCCCceEEEeEeccccceeeeeeecchhHHhhccCC----hhhhhhhhhhcccccchhh
Confidence 577788 89999999999999999888876542222222 2234588999999999876
No 6
>KOG3288|consensus
Probab=98.31 E-value=8e-07 Score=80.02 Aligned_cols=92 Identities=27% Similarity=0.293 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCC
Q psy12903 168 VYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPED 247 (267)
Q Consensus 168 ~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~ 247 (267)
..||.++|..+-.|++.|..=+-| .+=.+||. -|..+..|||-|+|..||..+++-|-|+-++.. ....|.++
T Consensus 139 ~elR~iiA~~Vasnp~~yn~AiLg-K~n~eYc~-WI~k~dsWGGaIElsILS~~ygveI~vvDiqt~-----rid~fged 211 (307)
T KOG3288|consen 139 YELREIIAQEVASNPDKYNDAILG-KPNKEYCA-WILKMDSWGGAIELSILSDYYGVEICVVDIQTV-----RIDRFGED 211 (307)
T ss_pred HHHHHHHHHHHhcChhhhhHHHhC-CCcHHHHH-HHccccccCceEEeeeehhhhceeEEEEeccee-----eehhcCCC
Confidence 369999999999999999866655 36679998 588899999999999999999999988755433 23346554
Q ss_pred --CCCeEEEEecCCCcccccc
Q psy12903 248 --KPPQIHLLYRPGHYDILYP 266 (267)
Q Consensus 248 --~~p~I~LLYrpGHYDILY~ 266 (267)
-..+|.|+|--=|||.|+.
T Consensus 212 ~~~~~rv~llydGIHYD~l~m 232 (307)
T KOG3288|consen 212 KNFDNRVLLLYDGIHYDPLAM 232 (307)
T ss_pred CCCCceEEEEecccccChhhh
Confidence 3457999998889999864
No 7
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00032 Score=64.51 Aligned_cols=91 Identities=12% Similarity=-0.052 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhcCHhhhhccccCC-----CCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCcccee
Q psy12903 168 VYLRLIASGQLQQDADFYQNFIEGN-----RTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAH 242 (267)
Q Consensus 168 ~~LR~lts~~i~~n~d~f~pFi~~~-----~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~ 242 (267)
..+|..-..|.+.+...|.++..+. ..+++||. +|++.+.||..++|+|||..|++|+.+..-.+. .+.+-
T Consensus 204 ~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~n-e~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~---~ik~n 279 (306)
T COG5539 204 SEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVN-EVLFDASDGITIEIQQLASLLKNPHYYTNTASP---SIKCN 279 (306)
T ss_pred HHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHh-hhcccccccchHHHHHHHHHhcCceEEeecCCc---eEEee
Confidence 6788888889999999999999764 26899997 699999999999999999999999988644333 12111
Q ss_pred cCCCCCCCeEEE-----EecCCCcccc
Q psy12903 243 DFPEDKPPQIHL-----LYRPGHYDIL 264 (267)
Q Consensus 243 ~f~e~~~p~I~L-----LYrpGHYDIL 264 (267)
+-+.++...+ +|--||||.+
T Consensus 280 --~c~~~~~~e~~~~~Ha~a~GH~n~~ 304 (306)
T COG5539 280 --ICGTGFVGEKDYYAHALATGHYNFG 304 (306)
T ss_pred --ccccccchhhHHHHHHHhhcCcccc
Confidence 1123333333 3345899976
No 8
>KOG2605|consensus
Probab=94.15 E-value=0.07 Score=51.28 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHh
Q psy12903 169 YLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTA 221 (267)
Q Consensus 169 ~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~a 221 (267)
+.|.....+++++++.|..|+++ ++.+|... -..-+.||+|++++|+|..
T Consensus 247 ~~~~~~~dq~~~e~~~~~~~vt~--~~~~y~k~-kr~~~~~gnhie~Qa~a~~ 296 (371)
T KOG2605|consen 247 HNRRECVDQLKKERDFYEDYVTE--DFTSYIKR-KRADGEPGNHIEQQAAADI 296 (371)
T ss_pred HHHHHHHHHHhhccccccccccc--chhhcccc-cccCCCCcchHHHhhhhhh
Confidence 56777888999999999999975 68888765 3447789999999999963
No 9
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=55.36 E-value=7.4 Score=31.05 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=11.0
Q ss_pred cCCCcchhHHHH
Q psy12903 85 RPDGNCFFRSFG 96 (267)
Q Consensus 85 RGDGNCFYRAf~ 96 (267)
.+||+|.|+.++
T Consensus 5 P~DG~CG~H~i~ 16 (108)
T PF05412_consen 5 PGDGSCGWHCIA 16 (108)
T ss_pred CCCCchHHHHHH
Confidence 589999999988
No 10
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=47.88 E-value=38 Score=30.79 Aligned_cols=45 Identities=22% Similarity=0.438 Sum_probs=35.9
Q ss_pred CcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHh
Q psy12903 125 QKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDAD 183 (267)
Q Consensus 125 ~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d 183 (267)
..|-.-+||+.++.+.+ .|||....+-=+.+||+..-.|+++|.+
T Consensus 53 nqfdLn~FY~Stlsla~--------------q~nd~~~ddeEi~~lrniidShikkhke 97 (255)
T TIGR01597 53 NQFDLNEFYQSTLSLAN--------------QFNDCNDDDKEIAHLRNIIDSHIKKHKE 97 (255)
T ss_pred ccccHHHHHHHHHHHHH--------------HhccccCchHHHHHHHHhHHHHHHhhhc
Confidence 46778899999888654 4556665667789999999999999986
No 11
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=35.64 E-value=86 Score=20.52 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHH
Q psy12903 133 HDQFMEVVNLISKPETNEDTLV 154 (267)
Q Consensus 133 ~~~f~~li~~i~~~~~~~~~L~ 154 (267)
|+.|+++++...++..+..++.
T Consensus 4 Y~~FL~il~~y~~~~~~~~~v~ 25 (47)
T PF02671_consen 4 YNEFLKILNDYKKGRISRSEVI 25 (47)
T ss_dssp HHHHHHHHHHHHCTCSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHH
Confidence 5778888777765445555544
No 12
>PRK06749 replicative DNA helicase; Provisional
Probab=33.99 E-value=57 Score=31.94 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=30.8
Q ss_pred HHHHHHhcCCcEEEE-EccCCCCC----ccceecCCC-----CCCCeEEEEecCCCcc
Q psy12903 215 IIALSTALDVGVRVR-YMDRGDST----EAIAHDFPE-----DKPPQIHLLYRPGHYD 262 (267)
Q Consensus 215 I~ALs~aL~v~I~V~-~ld~~~~~----~v~~~~f~e-----~~~p~I~LLYrpGHYD 262 (267)
+.+||+-|++||.+. ++.|.... .....++.+ ...-.|.+||||..||
T Consensus 332 LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l~R~~~y~ 389 (428)
T PRK06749 332 LKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLMYREDYYD 389 (428)
T ss_pred HHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeeccccc
Confidence 677889999998776 67776421 111222222 1355789999998885
No 13
>PRK09784 hypothetical protein; Provisional
Probab=28.82 E-value=62 Score=29.88 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=15.1
Q ss_pred cceeccCCCcchhHHHH
Q psy12903 80 NLRRTRPDGNCFFRSFG 96 (267)
Q Consensus 80 ~~R~vRGDGNCFYRAf~ 96 (267)
.+-+|.|||-|..||+.
T Consensus 201 kyapvdgdgycllrail 217 (417)
T PRK09784 201 KYAPVDGDGYCLLRAIL 217 (417)
T ss_pred eecccCCCchhHHHHHH
Confidence 45699999999999987
No 14
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=28.30 E-value=24 Score=26.71 Aligned_cols=44 Identities=27% Similarity=0.561 Sum_probs=33.3
Q ss_pred hhhhcccc-CCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEcc
Q psy12903 183 DFYQNFIE-GNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMD 232 (267)
Q Consensus 183 d~f~pFi~-~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld 232 (267)
..|.+||. |+.++++.|. ..+-+-.+|+++.-..+.|++|--+.
T Consensus 23 ~Yyd~fi~~GgDDvqQL~~------~~e~eF~eim~lvGM~sKPLHVrRlq 67 (82)
T PF04904_consen 23 QYYDTFIAQGGDDVQQLCE------AGEEEFLEIMALVGMASKPLHVRRLQ 67 (82)
T ss_pred HHHHHHHHHcChhHHHHHh------cChHHHHHHHHHhCccCccHHHHHHH
Confidence 46888986 4568999886 24567799999999999998885443
No 15
>PF03338 Pox_J1: Poxvirus J1 protein; InterPro: IPR005006 This is a family of proteins expressed by members of the Poxviridae.
Probab=26.27 E-value=3.7e+02 Score=22.66 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHcCCC
Q psy12903 110 LIAEKSKDKLLELGFQ 125 (267)
Q Consensus 110 ~~v~~~~~~L~~~g~~ 125 (267)
..+.++|+.|.++||-
T Consensus 46 ~llirsKdKLEaiG~~ 61 (145)
T PF03338_consen 46 ALLIRSKDKLEAIGYC 61 (145)
T ss_pred HHHHhhHHHHHHcccc
Confidence 4567899999999976
No 16
>PRK08506 replicative DNA helicase; Provisional
Probab=24.16 E-value=1.1e+02 Score=30.41 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCcEEEE-EccCCCC----CccceecCCC-----CCCCeEEEEecCCCcc
Q psy12903 214 HIIALSTALDVGVRVR-YMDRGDS----TEAIAHDFPE-----DKPPQIHLLYRPGHYD 262 (267)
Q Consensus 214 ~I~ALs~aL~v~I~V~-~ld~~~~----~~v~~~~f~e-----~~~p~I~LLYrpGHYD 262 (267)
.+.+||+-|++||.+. ++.|... ......++.+ ...-.|.+||||..|+
T Consensus 333 ~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~ 391 (472)
T PRK08506 333 GLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYK 391 (472)
T ss_pred HHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEecccccc
Confidence 4678888899998854 6776531 1222223322 1355788999998875
No 17
>PRK06321 replicative DNA helicase; Provisional
Probab=22.99 E-value=96 Score=30.84 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=29.6
Q ss_pred HHHHHHhcCCcEE-EEEccCCCCC----ccceecCCC-----CCCCeEEEEecCCCcc
Q psy12903 215 IIALSTALDVGVR-VRYMDRGDST----EAIAHDFPE-----DKPPQIHLLYRPGHYD 262 (267)
Q Consensus 215 I~ALs~aL~v~I~-V~~ld~~~~~----~v~~~~f~e-----~~~p~I~LLYrpGHYD 262 (267)
+.+||.-|++||. +.++.|.... .....++.+ ...-.|.+||||.-||
T Consensus 371 LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R~~~y~ 428 (472)
T PRK06321 371 LKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYD 428 (472)
T ss_pred HHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEechhhcC
Confidence 5677778899988 5667765421 122222322 1345788999988775
No 18
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.76 E-value=74 Score=33.59 Aligned_cols=66 Identities=18% Similarity=0.331 Sum_probs=49.5
Q ss_pred ccCCCCcccCCCCCchHHHHHHHHHHHHHhhccCCCcccccchHHHHHhcc-CC-------hHHHHHHHHHHHh
Q psy12903 12 SFDKGYSEDANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYI-GD-------EVYKGKVKDLARK 77 (267)
Q Consensus 12 ~~~~~~~~~~~~~~~de~~~~q~~~i~~e~~~~~plV~~~~~l~~L~~eY~-~~-------~~~~~Ki~~L~~~ 77 (267)
++.+.....++.+..+|.|.+..++|..|+++..-..|-+.-+.-|..|++ .+ |....|+..|.+.
T Consensus 446 lKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~E 519 (762)
T PLN03229 446 LKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDE 519 (762)
T ss_pred HhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHH
Confidence 333334456667778999999999999999887778888888888888886 33 4577777766654
No 19
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=22.42 E-value=1.2e+02 Score=19.29 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=18.2
Q ss_pred chHHHHHhccCChHHHHHHHHHHH
Q psy12903 53 DIMVLEQQYIGDEVYKGKVKDLAR 76 (267)
Q Consensus 53 ~l~~L~~eY~~~~~~~~Ki~~L~~ 76 (267)
|--.+.++|++||.|+..+..|-+
T Consensus 5 pegqimk~yaadpeyrkh~~v~yq 28 (38)
T PF02526_consen 5 PEGQIMKAYAADPEYRKHLNVLYQ 28 (38)
T ss_pred chhHHHHHHhcCHHHHHHHHHHHH
Confidence 344678999999999987766544
No 20
>COG4066 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.33 E-value=90 Score=26.58 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=15.8
Q ss_pred hcccceeccCCCcchhHHH
Q psy12903 77 KYSNLRRTRPDGNCFFRSF 95 (267)
Q Consensus 77 ~y~~~R~vRGDGNCFYRAf 95 (267)
.|++--.||+-|||+|=-+
T Consensus 123 ~FPGgfkVrkkgnvyYCPV 141 (165)
T COG4066 123 TFPGGFKVRKKGNVYYCPV 141 (165)
T ss_pred cCCCceEEEeeCCEEeccc
Confidence 4778889999999999554
No 21
>PRK08760 replicative DNA helicase; Provisional
Probab=22.07 E-value=1.1e+02 Score=30.35 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCcEEEE-EccCCCCC----ccceecCCC-----CCCCeEEEEecCCCcc
Q psy12903 214 HIIALSTALDVGVRVR-YMDRGDST----EAIAHDFPE-----DKPPQIHLLYRPGHYD 262 (267)
Q Consensus 214 ~I~ALs~aL~v~I~V~-~ld~~~~~----~v~~~~f~e-----~~~p~I~LLYrpGHYD 262 (267)
.+..||+-|++||.+. ++.|.... .....++.+ ...-.|.+||||..|+
T Consensus 370 ~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~ 428 (476)
T PRK08760 370 SLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDDYYN 428 (476)
T ss_pred HHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechhhcc
Confidence 4567888899997664 46654311 111222222 1345788999999886
No 22
>PRK07004 replicative DNA helicase; Provisional
Probab=22.04 E-value=1e+02 Score=30.45 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCcEEEE-EccCCCC----CccceecCCC-----CCCCeEEEEecCCCcc
Q psy12903 214 HIIALSTALDVGVRVR-YMDRGDS----TEAIAHDFPE-----DKPPQIHLLYRPGHYD 262 (267)
Q Consensus 214 ~I~ALs~aL~v~I~V~-~ld~~~~----~~v~~~~f~e-----~~~p~I~LLYrpGHYD 262 (267)
.+.+||+-|+|||.+. ++.|+.. ......++.+ ...-.|.+||||..|+
T Consensus 355 ~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R~~~y~ 413 (460)
T PRK07004 355 SLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYN 413 (460)
T ss_pred HHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEeccccccC
Confidence 4577888899997754 4565431 1222233322 1355788999998875
No 23
>KOG0662|consensus
Probab=22.01 E-value=71 Score=28.54 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=11.4
Q ss_pred HHHHhcCCcEEEE
Q psy12903 217 ALSTALDVGVRVR 229 (267)
Q Consensus 217 ALs~aL~v~I~V~ 229 (267)
.||+|+|+||+.+
T Consensus 146 glarafgipvrcy 158 (292)
T KOG0662|consen 146 GLARAFGIPVRCY 158 (292)
T ss_pred chhhhcCCceEee
Confidence 5789999999886
No 24
>PF09592 DUF2031: Protein of unknown function (DUF2031); InterPro: IPR006484 The sequences in this group represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=21.56 E-value=1.6e+02 Score=26.64 Aligned_cols=45 Identities=24% Similarity=0.518 Sum_probs=34.6
Q ss_pred CcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHh
Q psy12903 125 QKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDAD 183 (267)
Q Consensus 125 ~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d 183 (267)
.+|-.-+||+..+++.++. ||..-.+-=+.+||...-.|++.|.+
T Consensus 52 n~fdlN~Fy~Stlsl~nq~--------------nd~~~ddeei~~lrn~i~shikkhke 96 (228)
T PF09592_consen 52 NQFDLNDFYESTLSLANQF--------------NDYNDDDEEIIYLRNIIDSHIKKHKE 96 (228)
T ss_pred ccccHHHHHHHHHHHHhhc--------------ccccCCcHHHHHHHhhhHHHhhhhhc
Confidence 4577889999988876554 44444556678999999999999885
No 25
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=20.85 E-value=2.9e+02 Score=19.67 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=11.8
Q ss_pred cHHHHHHHHHHHHHhh
Q psy12903 128 TLEDFHDQFMEVVNLI 143 (267)
Q Consensus 128 ~~edF~~~f~~li~~i 143 (267)
.++||.+..+++|..-
T Consensus 4 P~~DFr~SM~EMI~~~ 19 (59)
T PF04844_consen 4 PYEDFRESMVEMIEEN 19 (59)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4678988888887543
No 26
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=20.64 E-value=2.6e+02 Score=24.29 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=41.0
Q ss_pred HHHHHHHhhccCCCcccccc-hHHHHHhccCC-hHHHHHHHHHHHhcccceeccCCCc
Q psy12903 34 SKNIEKEISDSIMLVGDKED-IMVLEQQYIGD-EVYKGKVKDLARKYSNLRRTRPDGN 89 (267)
Q Consensus 34 ~~~i~~e~~~~~plV~~~~~-l~~L~~eY~~~-~~~~~Ki~~L~~~y~~~R~vRGDGN 89 (267)
.+.|++.|....--.|++.| -..|.++|.-+ ...++.+..|... -.+.+.+|-|.
T Consensus 6 ~~~l~~~I~~g~~~~G~~LPsE~eLa~~~gVSR~TVR~Al~~L~~e-Gli~r~~G~GT 62 (233)
T TIGR02404 6 YQDLEQKITHGQYKEGDYLPSEHELMDQYGASRETVRKALNLLTEA-GYIQKIQGKGS 62 (233)
T ss_pred HHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHC-CCEEEeCCceE
Confidence 36788888654446799886 68999999944 6777777888765 45667888887
No 27
>COG4805 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.35 E-value=5.7e+02 Score=26.29 Aligned_cols=125 Identities=14% Similarity=0.161 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhhccCCCcccccch---------HHHHHhc------cCChHHHHHHHHHHHhccc-ceec-----cC
Q psy12903 28 DLILQQSKNIEKEISDSIMLVGDKEDI---------MVLEQQY------IGDEVYKGKVKDLARKYSN-LRRT-----RP 86 (267)
Q Consensus 28 e~~~~q~~~i~~e~~~~~plV~~~~~l---------~~L~~eY------~~~~~~~~Ki~~L~~~y~~-~R~v-----RG 86 (267)
|..++|++++..+-.+-.|++.....+ ..|..++ .--|.|...+..|.+.|.. -|.+ -+
T Consensus 186 e~~~~Q~~~~a~~~~ae~~~~~pl~~~~~~~~~~~~~~~~a~~~~ii~~qv~PA~~r~~aflaeey~~ka~~~~gv~~Lp 265 (588)
T COG4805 186 EKVIAQLRRIADAPGAETSFLVPLANRPADMSAANRADLRAEAAKIIEDQVLPAYARLIAFLAEEYRPKARHDAGVWRLP 265 (588)
T ss_pred HHHHHHHHHHhcCccccchhHhhhhccccccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCccccccccCC
Confidence 455557777766654444555442221 2233444 3348899989999776542 2322 36
Q ss_pred CCcchhHHHHHHHHHHHHh-hHHHH----HHH----HHHHHHHHcCCCcccHHHHHHHHHHHHHhhCC-CCCCHHHHHH
Q psy12903 87 DGNCFFRSFGFALLESLYH-LDFRL----IAE----KSKDKLLELGFQKFTLEDFHDQFMEVVNLISK-PETNEDTLVE 155 (267)
Q Consensus 87 DGNCFYRAf~F~ylE~ll~-~~~~~----~v~----~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~-~~~~~~~L~~ 155 (267)
||.-||+.+++.|--.=+. ++..+ .|. +....+.++||..= +-+..|+..+++-.. -....++|++
T Consensus 266 dG~a~Ya~~~~~~TTt~~tPdeihqlGL~eva~i~aqm~~~~~~~g~~~G---~~~~~f~~~l~~~~~~~~~~~~qLL~ 341 (588)
T COG4805 266 DGDAYYAFALHLYTTTDLTPDEIHQLGLEEVARIEAQMDQVAKQLGFTQG---QRLRAFMKMLRQDEAFTDEGREQLLA 341 (588)
T ss_pred CchHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---hHHHHHHHHhhcccccccccHHHHHH
Confidence 8999999999888654444 22222 122 23334557888422 223455555554441 1446667775
No 28
>KOG0403|consensus
Probab=20.22 E-value=3.9e+02 Score=27.11 Aligned_cols=81 Identities=21% Similarity=0.164 Sum_probs=46.9
Q ss_pred cchHHHHHhcc--CC-hHHHHHHHHHHHhcccceeccCCCcchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCccc
Q psy12903 52 EDIMVLEQQYI--GD-EVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFT 128 (267)
Q Consensus 52 ~~l~~L~~eY~--~~-~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~~~~~~~v~~~~~~L~~~g~~~~~ 128 (267)
..+..+++||. +| |.....+.+|.- --|++..--++=.|..+|=...-+...-.|.+++-.-|+
T Consensus 346 k~~~~IIqEYFlsgDt~Evi~~L~DLn~-------------~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fs 412 (645)
T KOG0403|consen 346 KDLTPIIQEYFLSGDTPEVIRSLRDLNL-------------PEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFS 412 (645)
T ss_pred HhhHHHHHHHHhcCChHHHHHHHHHcCC-------------ccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCC
Confidence 34566788886 44 555554544421 135555545554444422111111111234567888899
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy12903 129 LEDFHDQFMEVVNLISK 145 (267)
Q Consensus 129 ~edF~~~f~~li~~i~~ 145 (267)
.+||-+.|.-+|++..+
T Consensus 413 teDv~~~F~mLLesaed 429 (645)
T KOG0403|consen 413 TEDVEKGFDMLLESAED 429 (645)
T ss_pred HHHHHHHHHHHHhcchh
Confidence 99999999999988874
No 29
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.03 E-value=2e+02 Score=21.51 Aligned_cols=34 Identities=12% Similarity=0.274 Sum_probs=26.6
Q ss_pred CcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhc
Q psy12903 125 QKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFN 158 (267)
Q Consensus 125 ~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fn 158 (267)
...++|+-+....++++++.+++.+.++.++.|.
T Consensus 8 ~~~sfEea~~~LEeIv~~LE~~~l~Lees~~lye 41 (80)
T PRK00977 8 KPLSFEEALAELEEIVTRLESGDLPLEESLAAFE 41 (80)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3467888888888999999888888888776543
Done!