Query psy12903
Match_columns 267
No_of_seqs 170 out of 446
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 22:43:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dhi_B Ubiquitin thioesterase 100.0 1.3E-82 4.3E-87 578.9 20.1 251 17-267 11-274 (284)
2 2zfy_A Ubiquitin thioesterase 100.0 1.8E-74 6.1E-79 515.4 21.8 228 38-266 1-234 (234)
3 4ddg_A Ubiquitin-conjugating e 100.0 7E-74 2.4E-78 546.4 24.6 246 20-266 148-399 (399)
4 1tff_A Ubiquitin thiolesterase 100.0 1.4E-73 4.9E-78 509.5 20.5 225 41-267 1-231 (234)
5 3by4_A OTU1, ubiquitin thioest 99.9 2.4E-24 8.3E-29 189.2 10.1 92 168-266 47-139 (212)
6 3pfy_A OTU domain-containing p 99.9 3.2E-22 1.1E-26 172.3 11.3 126 74-266 54-181 (185)
7 3phx_A RNA-directed RNA polyme 99.8 1.7E-20 6E-25 161.4 10.5 94 167-266 64-159 (185)
8 3phu_A RNA-directed RNA polyme 99.8 2.5E-20 8.7E-25 164.2 10.0 94 167-266 64-159 (219)
9 3dkb_A Tumor necrosis factor, 92.7 1.1 3.6E-05 41.9 11.4 56 210-265 211-281 (390)
10 3zrh_A Ubiquitin thioesterase 90.5 1.1 3.9E-05 42.4 9.2 59 205-264 273-346 (454)
11 3fx7_A Putative uncharacterize 41.0 1.1E+02 0.0038 22.8 7.5 32 113-144 30-62 (94)
12 1jmu_A Protein MU-1; protein-p 39.0 8 0.00027 24.6 0.5 10 82-91 10-19 (41)
13 3ox7_P MH027; urokinase-type p 20.6 18 0.0006 19.7 -0.3 11 86-96 4-14 (23)
No 1
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=100.00 E-value=1.3e-82 Score=578.88 Aligned_cols=251 Identities=33% Similarity=0.618 Sum_probs=216.9
Q ss_pred CcccCCCCCchHHHHHHHHHHH--HHhhccCCCcccccchHHHHHhccC-C-hHHHHHHHHHHHhcccceeccCCCcchh
Q psy12903 17 YSEDANQVNQDDLILQQSKNIE--KEISDSIMLVGDKEDIMVLEQQYIG-D-EVYKGKVKDLARKYSNLRRTRPDGNCFF 92 (267)
Q Consensus 17 ~~~~~~~~~~de~~~~q~~~i~--~e~~~~~plV~~~~~l~~L~~eY~~-~-~~~~~Ki~~L~~~y~~~R~vRGDGNCFY 92 (267)
...+.+++++||+|++|+++|+ +||++++||||+++|++.|.+||++ + |+|++|+++|.++|+++|+|||||||||
T Consensus 11 ~~~~~~~~~~de~i~~q~~~i~~~~e~a~~~PLVg~~~~~~~L~~EYa~~~~~~~~~Ki~~L~~~Y~~~R~~RGDGNCFy 90 (284)
T 4dhi_B 11 NGQAAEAVVTDDEIVLQDQQLKTIEDEQKSVPLVATLAPFSILCAEYDNETSAAFLSKATELSEVYGEIRYIRGDGNCFY 90 (284)
T ss_dssp ---------------------------CTTCCSBCCCEEGGGGGGCTTSCCSHHHHHHHHHHHTTEEEEECBCCSTTHHH
T ss_pred cccccCCcCcHHHHHHHHHHhHhhhhhhccCCCcCCcCcHHHHHHHhccCchHHHHHHHHHHHHhccceeeecCCCchhH
Confidence 4457778899999999999999 9999999999999999999999994 4 5999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHH
Q psy12903 93 RSFGFALLESLYH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVV 167 (267)
Q Consensus 93 RAf~F~ylE~ll~-----~~~~~~v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV 167 (267)
|||+|+|||+|+. .||++.+++++..|.++||++++++||+++|+++|++|+++..+.+.|+++|||+..|+|+|
T Consensus 91 RAf~F~ylE~Ll~~~~e~~r~~~~~~~s~~~L~~~G~~~~~~eDF~d~f~ell~~i~~~~~~~~~L~~~Fnd~~~S~~iv 170 (284)
T 4dhi_B 91 RAILVGLIEIMLKDRARLEKFIASSRDWTRTLVELGFPDWTCTDFCDFFIEFLEKIHSGVHTEEAVYTILNDDGSANYIL 170 (284)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHhcCcccchHHH
Confidence 9999999999999 68899999999999999999999999999999999999866668999999999999999999
Q ss_pred HHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceec-CCC
Q psy12903 168 VYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHD-FPE 246 (267)
Q Consensus 168 ~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~-f~e 246 (267)
++||++||+||++|+++|+|||++++++++||+++|+||++||||++|+|||++||+||+|+|+|+++|.+++.|. ||+
T Consensus 171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~ 250 (284)
T 4dhi_B 171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPS 250 (284)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESC
T ss_pred HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCC
Confidence 9999999999999999999999988899999999999999999999999999999999999999999999999998 988
Q ss_pred CCC---CeEEEEecCCCccccccC
Q psy12903 247 DKP---PQIHLLYRPGHYDILYPL 267 (267)
Q Consensus 247 ~~~---p~I~LLYrpGHYDILY~~ 267 (267)
+.. |.|+|||||||||||||+
T Consensus 251 ~~~~~~p~I~LLYrpgHYDILY~~ 274 (284)
T 4dhi_B 251 DDQQIAPEITLLYRPGHYDVIYKK 274 (284)
T ss_dssp CCSCCCCSEEEEEETTEEEEEEEC
T ss_pred CCCCCCCEEEEeecCCCccccccC
Confidence 755 899999999999999985
No 2
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=100.00 E-value=1.8e-74 Score=515.40 Aligned_cols=228 Identities=52% Similarity=0.955 Sum_probs=213.4
Q ss_pred HHHhhccCCCcccccchHHHHHhcc-CChHHHHHHHHHHHhcccceeccCCCcchhHHHHHHHHHHHHh-----hHHHHH
Q psy12903 38 EKEISDSIMLVGDKEDIMVLEQQYI-GDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH-----LDFRLI 111 (267)
Q Consensus 38 ~~e~~~~~plV~~~~~l~~L~~eY~-~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~-----~~~~~~ 111 (267)
++||++++||||+++|+++|.+||+ +|++|++|+++|.++|+++|+||||||||||||+|+|||+|+. .||++.
T Consensus 1 ~~e~~~~~plv~~~~~~~~L~~eY~~~~~~~~~K~~~L~~~y~~~R~vRgDGNCFyRaf~f~ylE~ll~~~~e~~r~~~~ 80 (234)
T 2zfy_A 1 GSEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLEALLDDSKELQRFKAV 80 (234)
T ss_dssp -------CCSBCCCEEGGGGGGGSCTTCHHHHHHHHHHTTTCCEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CchhhhcCCCCCCccCHHHHHHHHccCCHHHHHHHHHHHHhccceeeccCCccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4688889999999999999999999 8999999999999999999999999999999999999999999 789999
Q ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccC
Q psy12903 112 AEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEG 191 (267)
Q Consensus 112 v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~ 191 (267)
+.++++.|..+||++++++||+++|+++|++|++ ..+.+.|+++|||+..|+++|++||++||+||++|+++|+|||++
T Consensus 81 ~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~~-~~~~~~L~~~fndq~~s~~~v~~lR~lta~yi~~~~d~f~pFi~~ 159 (234)
T 2zfy_A 81 SAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVEK-QTSVADLLASFNDQSTSDYLVVYLRLLTSGYLQRESKFFEHFIEG 159 (234)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGCCS
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHhhccchHHHHHHHHHHHHHHHHCHHHHhcccCC
Confidence 9999999999999999999999999999999984 569999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEEEEecCCCcccccc
Q psy12903 192 NRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP 266 (267)
Q Consensus 192 ~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~LLYrpGHYDILY~ 266 (267)
+.++++||.++|+||++||||++|+|||++|++||+|+|+|+++|..++.|.||+++.|+|+|||||||||||||
T Consensus 160 ~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~~~p~I~LlY~pgHYdiLy~ 234 (234)
T 2zfy_A 160 GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPGHYDILYK 234 (234)
T ss_dssp SCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTTCCCSEEEEEETTEEEEEEC
T ss_pred CCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCCCCCeEEEEECCCCcccCCC
Confidence 789999999999999999999999999999999999999999988889999999988999999999999999997
No 3
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=7e-74 Score=546.43 Aligned_cols=246 Identities=49% Similarity=0.891 Sum_probs=236.5
Q ss_pred cCCCCCchHHHHHHHHHHHHHhhccCCCcccccchHHHHHhcc-CChHHHHHHHHHHHhcccceeccCCCcchhHHHHHH
Q psy12903 20 DANQVNQDDLILQQSKNIEKEISDSIMLVGDKEDIMVLEQQYI-GDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFA 98 (267)
Q Consensus 20 ~~~~~~~de~~~~q~~~i~~e~~~~~plV~~~~~l~~L~~eY~-~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ 98 (267)
..+..++||+|++|+++|++|+++++||||+++|+++|.+||+ ++|+|++|+++|.++|+++|+||||||||||||+|+
T Consensus 148 a~~~v~~De~i~~q~~~I~~e~~~~~plv~~~~~~~~L~~eY~~~~~~~~~k~~~L~~~y~~~R~vrgDGNCFYRAf~f~ 227 (399)
T 4ddg_A 148 AMGGSAYDEAIMAQQDRIQQEIAVQNPLVSERLELSVLYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNSFYRAFGFS 227 (399)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHSCSBCCCEEGGGHHHHSCTTCHHHHHHHHHHHHHCSEEECBCCSSCHHHHHHHHH
T ss_pred hccccchhHHHHHHHHHHHhhhccCCCCcCCcCCHHHHHHHhhccChHHHHHHHHHHhhcCeeeeecCCCchHHHHHHHH
Confidence 4557789999999999999999999999999999999999998 789999999999999999999999999999999999
Q ss_pred HHHHHHh-----hHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHH
Q psy12903 99 LLESLYH-----LDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLI 173 (267)
Q Consensus 99 ylE~ll~-----~~~~~~v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~l 173 (267)
|||+|+. .+|++.+.+++..|..+||++++++||+++|+++|++|. ...+.++|++.|||++.|+|+|++||++
T Consensus 228 ylE~ll~~~~e~~r~~~~~~~~~~~l~~~g~~~~~~edf~~~f~~ll~~i~-~~~~~~~L~~~fnd~~~s~~iv~~lRll 306 (399)
T 4ddg_A 228 HLEALLDDSKELQRFKAVSAKSKEDLVSQGFTEFTIEDFHNTFMDLIEQVE-KQTSVADLLASFNDQSTSDYLVVYLRLL 306 (399)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHH-ccCCHHHHHHHHhcccchhhHHHHHHHH
Confidence 9999999 678888888999999999999999999999999999998 4578999999999999999999999999
Q ss_pred HHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEE
Q psy12903 174 ASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIH 253 (267)
Q Consensus 174 ts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~ 253 (267)
||+||+.|+++|+||+++++++++||.++|+||++||||++|+|||++||++|+|+|+|++.|..++.|.||+++.|.|+
T Consensus 307 ts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~~~~~~I~ 386 (399)
T 4ddg_A 307 TSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVY 386 (399)
T ss_dssp HHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTTTCCCCCE
T ss_pred HHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCCCCCCEEE
Confidence 99999999999999999888999999999999999999999999999999999999999988899999999999999999
Q ss_pred EEecCCCcccccc
Q psy12903 254 LLYRPGHYDILYP 266 (267)
Q Consensus 254 LLYrpGHYDILY~ 266 (267)
|||||||||||||
T Consensus 387 LLYrPgHYDiLY~ 399 (399)
T 4ddg_A 387 LLYRPGHYDILYK 399 (399)
T ss_dssp EEEETBEEEEEEC
T ss_pred EEEcCCccccCCC
Confidence 9999999999997
No 4
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=100.00 E-value=1.4e-73 Score=509.52 Aligned_cols=225 Identities=36% Similarity=0.726 Sum_probs=207.0
Q ss_pred hhccC-CCcccccchHHHHHhccCChHHHHHHHHHHHhcccceeccCCCcchhHHHHHHHHHHHHh-----hHHHHHHHH
Q psy12903 41 ISDSI-MLVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYH-----LDFRLIAEK 114 (267)
Q Consensus 41 ~~~~~-plV~~~~~l~~L~~eY~~~~~~~~Ki~~L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~-----~~~~~~v~~ 114 (267)
|+++. ||||+++|+++|.+||++||+|++|+++|.++|+++|+||||||||||||+|+|||+|+. .||++.+++
T Consensus 1 ~~~~~~plv~~~~~~~~l~~eY~~~~~~~~K~~~L~~~y~~~R~vRgDGNCFYRAf~f~ylE~ll~~~~e~~r~~~~~~~ 80 (234)
T 1tff_A 1 MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGKSREIFKFKERVLQ 80 (234)
T ss_dssp ------CCBCCCBCTTHHHHSCSGGGGGHHHHHHHHHHEEEEECBCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCcCCHHHHHHHhcCCHHHHHHHHHHHHhhhheeecCCCccHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 34567 999999999999999999999999999999999999999999999999999999999999 789999999
Q ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHHHHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccCCCC
Q psy12903 115 SKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRT 194 (267)
Q Consensus 115 ~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~~~~ 194 (267)
+++.|..+||++++++||+++|+++|++|+ ++.+.+.|+++|||+..|+++|++||++||+||++|+|+|+||++++++
T Consensus 81 ~~~~l~~~g~~~~~~edF~~~f~~ll~~i~-~~~~~~~L~~~fnd~~~s~~iv~~lR~lta~~i~~~~d~f~pFi~~~~~ 159 (234)
T 1tff_A 81 TPNDLLAAGFEEHKFRNFFNAFYSVVELVE-KDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMD 159 (234)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHH-HTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHTHHHHGGGSCTTSC
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHhcccchhhHHHHHHHHHHHHHHHCHHHHhhhhcCCCC
Confidence 999999999999999999999999999998 4459999999999999999999999999999999999999999998789
Q ss_pred HHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCCCCCeEEEEecCCCccccccC
Q psy12903 195 VFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYPL 267 (267)
Q Consensus 195 ~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~~~p~I~LLYrpGHYDILY~~ 267 (267)
+++||.++|+||++||||++|+|||++|++||+|+|+|+++ ..++.|.||+++.|.|+|||||||||||||+
T Consensus 160 ~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~-~~~~~~~~~~~~~~~I~LlY~pgHYdily~~ 231 (234)
T 1tff_A 160 IKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFPEAATPSVYLLYKTSHYNILYAA 231 (234)
T ss_dssp HHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCCCSSCSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCC-CccccccCCCCCCCeEEEEECCCCceecccC
Confidence 99999999999999999999999999999999999999986 6788899999989999999999999999985
No 5
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.91 E-value=2.4e-24 Score=189.17 Aligned_cols=92 Identities=24% Similarity=0.237 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCCC
Q psy12903 168 VYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPED 247 (267)
Q Consensus 168 ~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e~ 247 (267)
..||.+++.||++|+++|.+|+.+ .++++||.+ +..+++||||++|+|||++|+++|.|+..+..+ .+.|+++
T Consensus 47 ~~lR~~vv~yi~~n~d~f~e~~~~-~~~e~Y~~~-m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~-----~~~~~~~ 119 (212)
T 3by4_A 47 RDLREMVSKEVLNNPVKFNDAILD-KPNKDYAQW-ILKMESWGGAIEIGIISDALAVAIYVVDIDAVK-----IEKFNED 119 (212)
T ss_dssp HHHHHHHHHHHHHCTTTTCHHHHT-SCHHHHHHH-TTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTE-----EEEESTT
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcC-CCHHHHHHH-hcCCCEEccHHHHHHHHHHHCCCEEEEECCCCC-----eEEeCCC
Confidence 479999999999999999866655 699999986 888999999999999999999999999876432 3456555
Q ss_pred -CCCeEEEEecCCCcccccc
Q psy12903 248 -KPPQIHLLYRPGHYDILYP 266 (267)
Q Consensus 248 -~~p~I~LLYrpGHYDILY~ 266 (267)
..+.|+|+|.++|||+||+
T Consensus 120 ~~~~~I~L~Y~g~HYdsl~~ 139 (212)
T 3by4_A 120 KFDNYILILFNGIHYDSLTM 139 (212)
T ss_dssp TCSEEEEEEECSSCEEEEEE
T ss_pred CCCCeEEEEEcCCcceEEec
Confidence 3778999999999999985
No 6
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.87 E-value=3.2e-22 Score=172.28 Aligned_cols=126 Identities=18% Similarity=0.308 Sum_probs=84.0
Q ss_pred HHHhcccceeccCCCcchhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHhhCCCCCCHHHH
Q psy12903 74 LARKYSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTL 153 (267)
Q Consensus 74 L~~~y~~~R~vRGDGNCFYRAf~F~ylE~ll~~~~~~~v~~~~~~L~~~g~~~~~~edF~~~f~~li~~i~~~~~~~~~L 153 (267)
|.+....+|.|.|||||+|||++. +|. |-++.
T Consensus 54 ~~~~gL~~~~I~~DGnCLFrAia~--------------------qL~--g~~~~-------------------------- 85 (185)
T 3pfy_A 54 RDKKGFIIKQMKEDGACLFRAVAD--------------------QVY--GDQDM-------------------------- 85 (185)
T ss_dssp HHHHCCEEECCCCSTTHHHHHHHH--------------------HHH--SCGGG--------------------------
T ss_pred HHHCCcEEEeeCCCCChHHHHHHH--------------------HHh--CCchH--------------------------
Confidence 356778899999999999999993 332 11100
Q ss_pred HHHhcccCcchHHHHHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccC
Q psy12903 154 VEVFNNKDYSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDR 233 (267)
Q Consensus 154 ~~~fnd~~~s~yiV~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~ 233 (267)
-..||..++.||++|+++|.||+++ ++++||.+ +..+++|||+++|+|||++|+++|.|++.+.
T Consensus 86 -------------h~~LR~~vv~yi~~n~d~f~~Fv~~--~~e~Y~~~-m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~ 149 (185)
T 3pfy_A 86 -------------HEVVRKHCMDYLMKNADYFSNYVTE--DFTTYINR-KRKNNCHGNHIEMQAMAEMYNRPVEVYQYST 149 (185)
T ss_dssp -------------HHHHHHHHHHHHHHTHHHHTTCC--------------------CCHHHHHHHHHHHTSCEEEESSCS
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHH-hhCCCccchHHHHHHHHHhhCCcEEEEECCC
Confidence 1469999999999999999999975 79999985 7889999999999999999999999987764
Q ss_pred CCCCcccee-cCCCCCCCeEEEEe-cCCCcccccc
Q psy12903 234 GDSTEAIAH-DFPEDKPPQIHLLY-RPGHYDILYP 266 (267)
Q Consensus 234 ~~~~~v~~~-~f~e~~~p~I~LLY-rpGHYDILY~ 266 (267)
.+ ++.. .......+.|+|.| +.+|||.|+.
T Consensus 150 ~~---i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~ 181 (185)
T 3pfy_A 150 EP---INTFHGIHQNEDEPIRVSYHRNIHYNSVVN 181 (185)
T ss_dssp SC---SEEECTTSCCTTSCEEEEEETTTEEEEEEC
T ss_pred CC---eEEecCccCCCCCEEEEEECCCCCcccccC
Confidence 32 3221 11123456799999 5679999975
No 7
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.83 E-value=1.7e-20 Score=161.44 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCC
Q psy12903 167 VVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPE 246 (267)
Q Consensus 167 V~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e 246 (267)
...||..++.||++|++. |.. +.++++||.+ +...++|||+++|+|||++|+++|.|+++|.+. .....+.|++
T Consensus 64 ~~~LR~~~~~yi~~~~~~---~~~-~~~~~~Y~~~-m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~-~~~~i~~f~~ 137 (185)
T 3phx_A 64 KRLTESAARKYYQEEPEA---RLV-GLSLEDYLKR-MLSDNEWGSTLEASMLAKEMGITIIIWTVAASD-EVEAGIKFGD 137 (185)
T ss_dssp HHHHHHHHHHHGGGCTTH---HHH-CCCHHHHHHH-HTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CC-BCCEEEEESS
T ss_pred HHHHHHHHHHHHHhChHh---hhc-CCCHHHHHHH-hhCCCccCcHHHHHHHHHHHCCcEEEEEecCCC-CceEEEEcCC
Confidence 368999999999999998 333 3589999985 777999999999999999999999999888753 2233455655
Q ss_pred C-CCCeEEEEecC-CCcccccc
Q psy12903 247 D-KPPQIHLLYRP-GHYDILYP 266 (267)
Q Consensus 247 ~-~~p~I~LLYrp-GHYDILY~ 266 (267)
+ ..+.|+|+|.. +|||.|.+
T Consensus 138 ~~~~~~I~L~Y~g~~HYdsl~~ 159 (185)
T 3phx_A 138 GDVFTAVNLLHSGQTHFDALRI 159 (185)
T ss_dssp CCTTTSEEEEEETTTEEEEEEE
T ss_pred CCCCCEEEEEECCCcCchhceE
Confidence 4 36789999998 79999875
No 8
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.82 E-value=2.5e-20 Score=164.17 Aligned_cols=94 Identities=10% Similarity=0.103 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCHhhhhccccCCCCHHHHHhhhcccccccchHHHHHHHHHhcCCcEEEEEccCCCCCccceecCCC
Q psy12903 167 VVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPE 246 (267)
Q Consensus 167 V~~LR~lts~~i~~n~d~f~pFi~~~~~~~~yC~~~Ve~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~~~~~v~~~~f~e 246 (267)
...||..++.||++|++. |.. +.++++||.+ +...++|||+++|+|||++|+++|.|++++.+ |.....+.|.+
T Consensus 64 h~~LR~~va~yi~~n~d~---~~~-~~~feeY~~~-m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~-g~~~~i~~fge 137 (219)
T 3phu_A 64 KRLTESAARKYYQEEPEA---RLV-GLSLEDYLKR-MLSDNEWGSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGD 137 (219)
T ss_dssp HHHHHHHHHHHGGGCHHH---HHH-CCCHHHHHHH-HHSTTCCCCHHHHHHHHHHTTCCEEEEEESSS-SBEEEEEEESS
T ss_pred HHHHHHHHHHHHHhChhh---hhc-CCCHHHHHHH-hcCCCccCCHHHHHHHHHHhCCCEEEEEecCC-CCceeEEEecC
Confidence 368999999999999998 333 3589999986 67789999999999999999999999988865 22334455654
Q ss_pred C-CCCeEEEEecC-CCcccccc
Q psy12903 247 D-KPPQIHLLYRP-GHYDILYP 266 (267)
Q Consensus 247 ~-~~p~I~LLYrp-GHYDILY~ 266 (267)
+ ..+.|+|+|.. +|||.|.+
T Consensus 138 ~~~~~~I~L~Y~g~~HYdSL~~ 159 (219)
T 3phu_A 138 GDVFTAVNLLHSGQTHFDALRI 159 (219)
T ss_dssp CCTTTSEEEEEETTTEEEEEEE
T ss_pred CCCCCeEEEEECCCcCchhheE
Confidence 4 36789999998 79999976
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=92.68 E-value=1.1 Score=41.86 Aligned_cols=56 Identities=23% Similarity=0.235 Sum_probs=35.3
Q ss_pred chHHHHHHHHHhcCCcEEEEEcc--C--CCCCccceecC---------CCC--CCCeEEEEecCCCccccc
Q psy12903 210 SDHIHIIALSTALDVGVRVRYMD--R--GDSTEAIAHDF---------PED--KPPQIHLLYRPGHYDILY 265 (267)
Q Consensus 210 ~d~i~I~ALs~aL~v~I~V~~ld--~--~~~~~v~~~~f---------~e~--~~p~I~LLYrpGHYDILY 265 (267)
-.+++|=+||++|..||.|+--. + +.|..+-...| |.. -...|.|.|.-|||=.|-
T Consensus 211 LEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s~HFsaLV 281 (390)
T 3dkb_A 211 LEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLV 281 (390)
T ss_dssp CCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECSSCEEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEeccCceeeee
Confidence 35899999999999999997311 2 22444433333 121 234599999999996653
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=90.50 E-value=1.1 Score=42.41 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=38.1
Q ss_pred cccccchHHHHHHHHHhcCCcEEEEEccCC----CCCccceecC-----C----C-C-CCCeEEEEecCCCcccc
Q psy12903 205 PMFKESDHIHIIALSTALDVGVRVRYMDRG----DSTEAIAHDF-----P----E-D-KPPQIHLLYRPGHYDIL 264 (267)
Q Consensus 205 ~~~~e~d~i~I~ALs~aL~v~I~V~~ld~~----~~~~v~~~~f-----~----e-~-~~p~I~LLYrpGHYDIL 264 (267)
|++.--.+++|=+||++|.-||.|+- +.. .|..+-...| | . . ..+.|.|.|.-|||=.|
T Consensus 273 ~Pg~sLEeiHIFvLAhVLRRPIIV~~-d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~gHFsaL 346 (454)
T 3zrh_A 273 QPGASLEQTHIFVLAHILRRPIIVYG-VKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRGHFSAL 346 (454)
T ss_dssp STTCCCCHHHHHHHHHHTTSCEEEEE-CSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETTEEEEE
T ss_pred CCcchHHHHHHHHHHHHhcCCeEEec-cccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecccceeee
Confidence 45555569999999999999999963 321 1323222223 2 1 1 24569999999998655
No 11
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=40.97 E-value=1.1e+02 Score=22.81 Aligned_cols=32 Identities=6% Similarity=0.206 Sum_probs=20.7
Q ss_pred HHHHHHHHHcC-CCcccHHHHHHHHHHHHHhhC
Q psy12903 113 EKSKDKLLELG-FQKFTLEDFHDQFMEVVNLIS 144 (267)
Q Consensus 113 ~~~~~~L~~~g-~~~~~~edF~~~f~~li~~i~ 144 (267)
.+...++..+| |++--...|-+.|.++++.+.
T Consensus 30 ~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~ 62 (94)
T 3fx7_A 30 NSLSNHFHNLESWRDARRDKFSEVLDNLKSTFN 62 (94)
T ss_dssp HHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHhhHHHHHHHHHHHHHHHHHH
Confidence 34445555677 777767777777777766554
No 12
>1jmu_A Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} SCOP: e.35.1.1
Probab=39.03 E-value=8 Score=24.56 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=8.3
Q ss_pred eeccCCCcch
Q psy12903 82 RRTRPDGNCF 91 (267)
Q Consensus 82 R~vRGDGNCF 91 (267)
-.|+||||-|
T Consensus 10 ~nI~GdGN~F 19 (41)
T 1jmu_A 10 INVTGDGNVF 19 (41)
T ss_dssp BCTTSSSCEE
T ss_pred EEEeCCCcee
Confidence 4789999977
No 13
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=20.62 E-value=18 Score=19.70 Aligned_cols=11 Identities=36% Similarity=0.906 Sum_probs=8.8
Q ss_pred CCCcchhHHHH
Q psy12903 86 PDGNCFFRSFG 96 (267)
Q Consensus 86 GDGNCFYRAf~ 96 (267)
.||-|-||.+-
T Consensus 4 adgacswrgle 14 (23)
T 3ox7_P 4 ADGACSWRGLE 14 (26)
T ss_pred cCcccccccch
Confidence 59999999753
Done!