RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12903
         (267 letters)



>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2
           (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 228

 Score =  217 bits (554), Expect = 1e-71
 Identities = 80/225 (35%), Positives = 140/225 (62%), Gaps = 7/225 (3%)

Query: 47  LVGDKEDIMVLEQQYIGDEVYKGKVKDLARKYSNLRRTRPDGNCFFRSFGFALLESLYHL 106
           L+ +K DI+ + + +  + +Y+ K+++L+++++ +R+T+ D NCF+R+ G++ LESL   
Sbjct: 2   LISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDRNCFYRALGYSYLESLLGK 61

Query: 107 D-----FRLIAEKSKDKLLELGFQKFTLEDFHDQFMEVVNLISKPETNEDTLVEVFNNKD 161
                 F+    ++ + LL  GF++    +F + F  VV L+ K + +  +L++VFN++ 
Sbjct: 62  SREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEK-DGSVSSLLKVFNDQS 120

Query: 162 YSDYVVVYLRLIASGQLQQDADFYQNFIEGNRTVFEFCRQEVEPMFKESDHIHIIALSTA 221
            SD++V +LRL+ S  ++  ADF+++FI+    + +FC  EVEPM  E DHI I ALS A
Sbjct: 121 ASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQA 180

Query: 222 LDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRPGHYDILYP 266
           L + ++V Y+D    T    H FPE   P ++LLY+  HY+ILY 
Sbjct: 181 LSIALQVEYVDEM-DTALNHHVFPEAATPSVYLLYKTSHYNILYA 224


>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 30.2 bits (67), Expect = 0.23
 Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 78  YSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLE-LGFQKFTLEDFHDQF 136
           Y       P  N        A   S   L      E+++  +   L +   +  D H  +
Sbjct: 31  YRVRSSMSPTTNVLLSPLSVATALSALSLGAD---ERTESIIHRALYYDLISSPDIHGTY 87

Query: 137 MEVVNLISKPETNEDTLVEVFNNKDY 162
            E+++ ++ P+ N  +   +   K  
Sbjct: 88  KELLDTVTAPQKNLKSASRIVFEKKL 113


>g1lq8.1 e.1.1.1 (A:,B:) Protein C inhibitor {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 358

 Score = 27.9 bits (61), Expect = 1.5
 Identities = 14/72 (19%), Positives = 29/72 (40%)

Query: 78  YSNLRRTRPDGNCFFRSFGFALLESLYHLDFRLIAEKSKDKLLELGFQKFTLEDFHDQFM 137
           Y  L    P  N FF     ++  ++  L      +    + L L  QK + ++ H  F 
Sbjct: 9   YRALASAAPSQNIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGLNLQKSSEKELHRGFQ 68

Query: 138 EVVNLISKPETN 149
           +++  +++P   
Sbjct: 69  QLLQELNQPRDG 80


>d1m15a2 d.128.1.2 (A:96-357) Arginine kinase, C-terminal domain
           {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
          Length = 262

 Score = 26.8 bits (59), Expect = 2.3
 Identities = 8/43 (18%), Positives = 14/43 (32%)

Query: 206 MFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDK 248
              E DH+ II++    D+    + +            F  D 
Sbjct: 126 WVNEEDHLRIISMQKGGDLKTVYKRLVTAVDNIESKLPFSHDD 168


>d1gkab_ b.60.1.1 (B:) Alpha-crustacyanin {European lobster (Homarus
           gammarus) [TaxId: 6707]}
          Length = 174

 Score = 25.2 bits (54), Expect = 6.3
 Identities = 6/45 (13%), Positives = 10/45 (22%), Gaps = 4/45 (8%)

Query: 54  IMVLEQQYIGDEVYKGKVKDLARKY----SNLRRTRPDGNCFFRS 94
             V  +          K   +  K     S          C +R+
Sbjct: 130 AFVFSRTPQTSGPAVEKTAAVFNKNGVEFSKFVPVSHTAECVYRA 174


>d1vkda_ b.67.2.4 (A:) Hypothetical protein TM1225 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 327

 Score = 25.4 bits (55), Expect = 8.7
 Identities = 12/53 (22%), Positives = 16/53 (30%)

Query: 206 MFKESDHIHIIALSTALDVGVRVRYMDRGDSTEAIAHDFPEDKPPQIHLLYRP 258
            F   DH   I +    D    VR  +           FP     +  +L RP
Sbjct: 120 TFCTDDHGPTIGVGMTKDFKTFVRLPNAYVPFNRNGVLFPRKINGKYVMLNRP 172


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.139    0.399 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,008,421
Number of extensions: 48070
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 15
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)