BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12905
(611 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53619|COPD_BOVIN Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1
Length = 511
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 252/558 (45%), Positives = 337/558 (60%), Gaps = 151/558 (27%)
Query: 60 VCYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPL 119
V + C G AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+
Sbjct: 2 VLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPM 61
Query: 120 EKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGY 179
EKLYM+LITTK SNILEDLETLRLFSRVIPEYCR L+ENE++++ F LIFAFDEIVALGY
Sbjct: 62 EKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGY 121
Query: 180 RESVNLAQVRTFVEMDSHEEKVYQAVR---KREAENKMREKAKELKRQRMES---AKKFP 233
RE+VNLAQ+RTF EMDSHEEKV++AVR +REA+ +MR KAKEL++ R ++ KK P
Sbjct: 122 RENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAP 181
Query: 234 KMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSL 293
G FGSS+ S T S I +T+ +
Sbjct: 182 GFGG---------FGSSTVSGGSTT------------SMITETI---------------I 205
Query: 294 ENESYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVST 353
E + + K+A A +P+ +KA+KLG+K +V++FVD+LKSEGE +IS + K ++
Sbjct: 206 ETD----KPKVAPAPA-RPSGPSKALKLGAKGKEVDNFVDKLKSEGENIISS-NMGKRTS 259
Query: 354 LSSKIPTTNISNMDSYSIFLFTLVMQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLL 413
++K+ I NM+S
Sbjct: 260 EATKVHAPPI-NMES--------------------------------------------- 273
Query: 414 SIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLR 473
+H++ EE++ ++ GR+GG++ ELHG++ LRISD+K+G R+++H+
Sbjct: 274 --------VHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKFG-------RIRLHVE 318
Query: 474 QEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKEL 533
N+D +G+Q+QTHPNVDK+L
Sbjct: 319 -----------------------------------------NEDKKGVQLQTHPNVDKKL 337
Query: 534 FKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYE 593
F +++ IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+ GCDVNIEYE
Sbjct: 338 FTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN-GCDVNIEYE 396
Query: 594 LEHEEKELNQVTISIPLP 611
L+ + ELN V I+IPLP
Sbjct: 397 LQEDNLELNDVVITIPLP 414
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 55/59 (93%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK 59
PEYCR L+ENE++++ F LIFAFDEIVALGYRE+VNLAQ+RTF EMDSHEEKV++AVR+
Sbjct: 91 PEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRE 149
>sp|Q5RA77|COPD_PONAB Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1
Length = 511
Score = 444 bits (1141), Expect = e-123, Method: Compositional matrix adjust.
Identities = 248/558 (44%), Positives = 329/558 (58%), Gaps = 151/558 (27%)
Query: 60 VCYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPL 119
V + C G AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+
Sbjct: 2 VLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPM 61
Query: 120 EKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGY 179
EKLYM+LITTK SNILEDLETLRLFSRVIPEYCR L+ENE++++ F LIFAFDEIVALGY
Sbjct: 62 EKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGY 121
Query: 180 RESVNLAQVRTFVEMDSHEEKVYQAVR---KREAENKMREKAKELKRQRMES---AKKFP 233
RE+VNLAQ+RTF EMDSHEEKV++AVR +REA+ +MR KAKEL++ R ++ KK P
Sbjct: 122 RENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAP 181
Query: 234 KMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSL 293
G FGSS+ S ++ I +A R
Sbjct: 182 GFGG---------FGSSAVSGGSTAAMITETIIETDKPKVAPAPAR-------------- 218
Query: 294 ENESYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVST 353
P+ +KA+KLG+K +V++FVD+LKSEGE ++S ++ K ++
Sbjct: 219 ------------------PSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSS-SMGKRTS 259
Query: 354 LSSKIPTTNISNMDSYSIFLFTLVMQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLL 413
+SK+ I NM+S
Sbjct: 260 EASKMHAPPI-NMES--------------------------------------------- 273
Query: 414 SIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLR 473
+H++ EE++ ++ GR+GG++ ELHG++ LRISD+KYG R+++H+
Sbjct: 274 --------VHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYG-------RIRLHVE 318
Query: 474 QEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKEL 533
N+D +G+Q+QTHPNVDK+L
Sbjct: 319 -----------------------------------------NEDKKGVQLQTHPNVDKKL 337
Query: 534 FKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYE 593
F +++ IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+ GCDVNIEYE
Sbjct: 338 FTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN-GCDVNIEYE 396
Query: 594 LEHEEKELNQVTISIPLP 611
L+ + ELN V I+IPLP
Sbjct: 397 LQEDNLELNDVVITIPLP 414
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 55/59 (93%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK 59
PEYCR L+ENE++++ F LIFAFDEIVALGYRE+VNLAQ+RTF EMDSHEEKV++AVR+
Sbjct: 91 PEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRE 149
>sp|P48444|COPD_HUMAN Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1
Length = 511
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 247/558 (44%), Positives = 329/558 (58%), Gaps = 151/558 (27%)
Query: 60 VCYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPL 119
V + C G AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+
Sbjct: 2 VLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPM 61
Query: 120 EKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGY 179
EKLYM+LITTK SNILEDLETLRLFSRVIPEYCR L+ENE++++ F LIFAFDEIVALGY
Sbjct: 62 EKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGY 121
Query: 180 RESVNLAQVRTFVEMDSHEEKVYQAVR---KREAENKMREKAKELKRQRMES---AKKFP 233
RE+VNLAQ+RTF EMDSHEEKV++AVR +REA+ +MR KAKEL++ R ++ KK P
Sbjct: 122 RENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAP 181
Query: 234 KMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSL 293
G FGSS+ S ++ I +A R
Sbjct: 182 GFGG---------FGSSAVSGGSTAAMITETIIETDKPKVAPAPAR-------------- 218
Query: 294 ENESYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVST 353
P+ +KA+KLG+K +V++FVD+LKSEGE ++S ++ K ++
Sbjct: 219 ------------------PSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSS-SMGKRTS 259
Query: 354 LSSKIPTTNISNMDSYSIFLFTLVMQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLL 413
++K+ I NM+S
Sbjct: 260 EATKMHAPPI-NMES--------------------------------------------- 273
Query: 414 SIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLR 473
+H++ EE++ ++ GR+GG++ ELHG++ LRISD+KYG R+++H+
Sbjct: 274 --------VHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKYG-------RIRLHVE 318
Query: 474 QEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKEL 533
N+D +G+Q+QTHPNVDK+L
Sbjct: 319 -----------------------------------------NEDKKGVQLQTHPNVDKKL 337
Query: 534 FKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYE 593
F +++ IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+ GCDVNIEYE
Sbjct: 338 FTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN-GCDVNIEYE 396
Query: 594 LEHEEKELNQVTISIPLP 611
L+ + ELN V I+IPLP
Sbjct: 397 LQEDNLELNDVVITIPLP 414
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 55/59 (93%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK 59
PEYCR L+ENE++++ F LIFAFDEIVALGYRE+VNLAQ+RTF EMDSHEEKV++AVR+
Sbjct: 91 PEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRE 149
>sp|Q5XJY5|COPD_MOUSE Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=2
Length = 511
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/558 (44%), Positives = 328/558 (58%), Gaps = 151/558 (27%)
Query: 60 VCYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPL 119
V + C G AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+
Sbjct: 2 VLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPM 61
Query: 120 EKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGY 179
EKLYM+LITTK SNILEDLETLRLFSRVIPEYCR L+ENE++++ F LIFAFDEIVALGY
Sbjct: 62 EKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGY 121
Query: 180 RESVNLAQVRTFVEMDSHEEKVYQAVR---KREAENKMREKAKELKRQRMES---AKKFP 233
RE+VNLAQ+RTF EMDSHEEKV++AVR +REA+ +MR KAKEL++ R ++ KK P
Sbjct: 122 RENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAP 181
Query: 234 KMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSL 293
G FGSS+ S ++ I +A R
Sbjct: 182 GFGG---------FGSSAVSGGSTAAMITETIIETDKPKVAPAPAR-------------- 218
Query: 294 ENESYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVST 353
P+ +KA+KLG+K +V++FVD+LKSEGE ++S + K ++
Sbjct: 219 ------------------PSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSS-NMGKRTS 259
Query: 354 LSSKIPTTNISNMDSYSIFLFTLVMQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLL 413
++K+ I NM+S
Sbjct: 260 EATKVHAPPI-NMES--------------------------------------------- 273
Query: 414 SIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLR 473
+H++ EE++ ++ GR+GG++ ELHG++ LRISD+K+G R+++H+
Sbjct: 274 --------VHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKFG-------RIRLHVE 318
Query: 474 QEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKEL 533
N+D +G+Q+QTHPNVDK+L
Sbjct: 319 -----------------------------------------NEDKKGVQLQTHPNVDKKL 337
Query: 534 FKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYE 593
F +++ IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+ GCDVNIEYE
Sbjct: 338 FTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN-GCDVNIEYE 396
Query: 594 LEHEEKELNQVTISIPLP 611
L+ + ELN V I+IPLP
Sbjct: 397 LQEDNLELNDVVITIPLP 414
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 55/59 (93%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK 59
PEYCR L+ENE++++ F LIFAFDEIVALGYRE+VNLAQ+RTF EMDSHEEKV++AVR+
Sbjct: 91 PEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRE 149
>sp|Q5ZL57|COPD_CHICK Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1
Length = 510
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 247/555 (44%), Positives = 327/555 (58%), Gaps = 146/555 (26%)
Query: 60 VCYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPL 119
V + C G AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+
Sbjct: 2 VLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPM 61
Query: 120 EKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGY 179
EKLYM+LITTK SNILEDLETLRLFSRVIPEYCR L+ENE++++ F LIFAFDEIVALGY
Sbjct: 62 EKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGY 121
Query: 180 RESVNLAQVRTFVEMDSHEEKVYQAVR---KREAENKMREKAKELKRQRMESAKKFPKMG 236
RE+VNLAQ+RTF EMDSHEEKV++AVR +REA+ +MR KAKEL++ R + A++ K
Sbjct: 122 RENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRD-AERLGKKA 180
Query: 237 SGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSLENE 296
G G FGSS+ S ++ I +A R
Sbjct: 181 PGFG-----GFGSSAVSGGTTAAMITETIIETEKPKVAPAPSR----------------- 218
Query: 297 SYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVSTLSS 356
P+ +KA+KLG+K +V++FVD+LKSEGE +++ ++ K ST ++
Sbjct: 219 ---------------PSGPSKALKLGAKGKEVDNFVDKLKSEGENIMT--SVGKRSTEAA 261
Query: 357 KIPTTNISNMDSYSIFLFTLVMQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLLSIM 416
K+ I NM+S
Sbjct: 262 KVLAPPI-NMES------------------------------------------------ 272
Query: 417 FLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLRQEE 476
+H++ EE++ ++ GR+GG++ ELHG++ L ISDEK+ R+++H+
Sbjct: 273 -----VHMKIEEKISLTCGRDGGLQNMELHGMIMLHISDEKFA-------RIRLHVE--- 317
Query: 477 QLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKELFKS 536
N+D RG+Q+QTHPNVDK+LF +
Sbjct: 318 --------------------------------------NEDKRGVQLQTHPNVDKKLFTA 339
Query: 537 KTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEH 596
+++IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+ CDVNIEYEL+
Sbjct: 340 ESQIGLKNPEKSFPINSDVGVLKWRLQTTEESFIPLTINCWPSESGN-SCDVNIEYELQE 398
Query: 597 EEKELNQVTISIPLP 611
E ELN V I IPLP
Sbjct: 399 ESLELNDVVIMIPLP 413
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 55/59 (93%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK 59
PEYCR L+ENE++++ F LIFAFDEIVALGYRE+VNLAQ+RTF EMDSHEEKV++AVR+
Sbjct: 91 PEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRE 149
>sp|Q66H80|COPD_RAT Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1
Length = 511
Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust.
Identities = 246/558 (44%), Positives = 328/558 (58%), Gaps = 151/558 (27%)
Query: 60 VCYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPL 119
V + C G AIVSRQFVEMTR RIEGLLAAFPKLM++GKQHTFVET+SVRYVYQP+
Sbjct: 2 VLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPM 61
Query: 120 EKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGY 179
EKLYM+LITTK SNILEDLETLRLFSRVIPEYCR L+ENE++++ F LIFAFDEIVALGY
Sbjct: 62 EKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGY 121
Query: 180 RESVNLAQVRTFVEMDSHEEKVYQAVR---KREAENKMREKAKELKRQRMES---AKKFP 233
RE+VNLAQ+RTF EMDSHEEKV++AVR +REA+ +MR KAKEL++ R ++ KK P
Sbjct: 122 RENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAP 181
Query: 234 KMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSL 293
G FGSS+ S ++ I +A R
Sbjct: 182 GFGG---------FGSSAVSGGSTAAMITETIIETDKPKVAPAPAR-------------- 218
Query: 294 ENESYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVST 353
P+ +KA+KLG+K +V++FVD+LKSEGE ++S + K ++
Sbjct: 219 ------------------PSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSS-NMGKRTS 259
Query: 354 LSSKIPTTNISNMDSYSIFLFTLVMQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLL 413
++K+ I NM+S
Sbjct: 260 EAAKVHAPPI-NMES--------------------------------------------- 273
Query: 414 SIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLR 473
+H++ EE++ ++ GR+GG++ ELHG++ LRISD+K+G R+++H+
Sbjct: 274 --------VHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKFG-------RIRLHVE 318
Query: 474 QEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKEL 533
N+D +G+Q+QTHPNVDK+L
Sbjct: 319 -----------------------------------------NEDKKGVQLQTHPNVDKKL 337
Query: 534 FKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYE 593
F +++ IGLKNP K FP+N+D+GVLKWR +T+ES +PL+INCWPS++G+ GCDVNIEYE
Sbjct: 338 FTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSESGN-GCDVNIEYE 396
Query: 594 LEHEEKELNQVTISIPLP 611
L+ + ELN V I+IPLP
Sbjct: 397 LQEDNLELNDVVITIPLP 414
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 55/59 (93%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK 59
PEYCR L+ENE++++ F LIFAFDEIVALGYRE+VNLAQ+RTF EMDSHEEKV++AVR+
Sbjct: 91 PEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRE 149
>sp|Q09236|COPD_CAEEL Probable coatomer subunit delta OS=Caenorhabditis elegans
GN=C13B9.3 PE=3 SV=1
Length = 515
Score = 214 bits (546), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/177 (60%), Positives = 138/177 (77%), Gaps = 13/177 (7%)
Query: 61 CYLSRTCRSIGIAIVSRQFV-EMTRARIEGLLAAFPKLM-----SSGKQHTFVETDSVRY 114
C LS+T G +V+RQFV +M R+R+EGL+ AFPKL+ ++ +QHTFVETDSVRY
Sbjct: 7 CILSKT----GKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRY 62
Query: 115 VYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEI 174
VY PL+ +Y++L+TTK SNILEDLETLRLF RVIPEYCR+ +E E+ + F LIFAFDE+
Sbjct: 63 VYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFDEV 122
Query: 175 VALGYRESVNLAQVRTFVEMDSHEEKVYQAVR---KREAENKMREKAKELKRQRMES 228
V LGYRESVNLAQ+RTF EMDSHEE+V+ ++ ++ A+ M EKAKELKR + E+
Sbjct: 123 VTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQAMAEKAKELKRAQKEA 179
Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 109/191 (57%), Gaps = 16/191 (8%)
Query: 424 LRQEEQLIISVGR---NGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLRQEEQLII 480
LRQ+ Q I V + +GG+ + R+ R +H+R EE++
Sbjct: 242 LRQQGQSIAPVQKASLSGGVSSLAAPISTAPRV------------KREVVHVRTEEKINT 289
Query: 481 SVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKELFKSKTEI 540
V R+GG+E+ E+ +TL I ++ I + + N G Q+Q HPN+DK+ ++S + +
Sbjct: 290 RVSRDGGLESGEVQATVTLSIGSPEFIPISIKMNNGSAAGTQLQVHPNLDKKEWQSSSTL 349
Query: 541 GLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKE 600
+K KP+P+N+D+G+LKW+ ++E LP+S NCWP ++ S G VNIEY L+ E+
Sbjct: 350 KIKPNGKPYPVNSDVGILKWKMALSEEEQLPISFNCWPQES-SDGVQVNIEYTLQREDIT 408
Query: 601 LNQVTISIPLP 611
LN V I +PLP
Sbjct: 409 LNNVRIIVPLP 419
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 49/59 (83%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK 59
PEYCR+ +E E+ + F LIFAFDE+V LGYRESVNLAQ+RTF EMDSHEE+V+ +++
Sbjct: 97 PEYCRSNEEKEILAHDFDLIFAFDEVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKE 155
>sp|Q0DJA0|COPD1_ORYSJ Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica
GN=Os05g0310800 PE=2 SV=1
Length = 524
Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 126/303 (41%), Positives = 177/303 (58%), Gaps = 42/303 (13%)
Query: 71 GIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTK 130
G A+VSRQFV+M+R RIEGLLAAFPKL+ +GKQHT+VET++VRYVYQP+E LY+LLIT K
Sbjct: 13 GKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNK 72
Query: 131 TSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRT 190
SNILEDL+TLRL S+++PEY +LDE V AF LIFAFDE ++LG +E+V + QV+
Sbjct: 73 QSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISLGNKENVTVQQVKQ 132
Query: 191 FVEMDSHEEKVYQAVRK---REAENKMREKAKELKRQRMESAKKFPKMGSGVGVGSNPYF 247
+ EM+SHEEK ++ + + E + M++KA EL + RME K
Sbjct: 133 YCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRMERGK----------------L 176
Query: 248 GSSSYSSSPVTPVLESA--DISIRSSYIAQTVQREKKFRDIRIGRKSLENESYPLRIKIA 305
YSS V+E D+SI S D+ +S+ + K
Sbjct: 177 DKGGYSSISGPRVIEKTFNDMSITGSGFGSGSGLGGLGMDM---------DSFASKPKGG 227
Query: 306 QAILWKPAVSAKA------MKLGSKSHDVESFVDQLKSEGEKVISGPALSKVSTLSSKIP 359
+P+ +A A MKLG K+ F++ LK+EGE ++ S V + +S +P
Sbjct: 228 -----RPSAAATAPGKGLGMKLG-KTQKTNQFLESLKAEGEVILEDVQPSSVQSRASPLP 281
Query: 360 TTN 362
++
Sbjct: 282 PSD 284
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 95/138 (68%), Gaps = 3/138 (2%)
Query: 475 EEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKELF 534
EE+L ++V R+GG+ F++ G L L++ ++ G I++ + N+D G+ +THPN++K+LF
Sbjct: 291 EEKLNVTVKRDGGVNNFDVQGTLALQVLNDADGFIQLQIENQDVPGLSFKTHPNINKDLF 350
Query: 535 KSKTEIGLKNPSKPFPLN-NDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYE 593
S+ +G K+P++PFP N+ ++KWR DES LPLS+NCWPS +GS VNIEYE
Sbjct: 351 NSQQVVGAKDPNRPFPSGQNETPLVKWRIQGMDESSLPLSVNCWPSVSGSETY-VNIEYE 409
Query: 594 LEHEEKELNQVTISIPLP 611
E +L+ V ISIPLP
Sbjct: 410 -AAEMFDLHNVVISIPLP 426
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQ 55
PEY +LDE V AF LIFAFDE ++LG +E+V + QV+ + EM+SHEEK ++
Sbjct: 91 PEYSPSLDEEGVCKTAFELIFAFDEAISLGNKENVTVQQVKQYCEMESHEEKAHK 145
>sp|Q0DJ99|COPD2_ORYSJ Coatomer subunit delta-2 OS=Oryza sativa subsp. japonica
GN=Os05g0311000 PE=2 SV=1
Length = 523
Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/303 (41%), Positives = 176/303 (58%), Gaps = 43/303 (14%)
Query: 71 GIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTK 130
G A+VSRQFV+M+R RIEGLLAAFPKL+ +GKQHT+VET++VRYVYQP+E LY+LLIT K
Sbjct: 13 GKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNK 72
Query: 131 TSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRT 190
SNILEDL+TLRL S+++PEY +LDE V AF LIFAFDE + LG +E+V + QV+
Sbjct: 73 QSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAICLGNKENVTVQQVKQ 132
Query: 191 FVEMDSHEEKVYQAVRK---REAENKMREKAKELKRQRMESAKKFPKMGSGVGVGSNPYF 247
+ EM+SHEEK ++ + + E + M++KA EL + +ME K
Sbjct: 133 YCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMKMERGK----------------L 176
Query: 248 GSSSYSSSPVTPVLESA--DISIRSSYIAQTVQREKKFRDIRIGRKSLENESYPLRIKIA 305
YS+ V+E A D+SI S D+ +S+ + K
Sbjct: 177 DKGGYSAISGPRVVEKAFGDMSITGSGFGSGSGLGGLSMDM---------DSFASKPK-- 225
Query: 306 QAILWKPAVSAKA------MKLGSKSHDVESFVDQLKSEGEKVISGPALSKVSTLSSKIP 359
+P+ +A A MKLG K+ F++ LK+EGE ++ S V + S +P
Sbjct: 226 ----GRPSAAATAPGKGLGMKLG-KTQKTNQFLESLKAEGEVILEDVQPSSVQSRVSPLP 280
Query: 360 TTN 362
++
Sbjct: 281 PSD 283
Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 3/138 (2%)
Query: 475 EEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKELF 534
EE+L ++V R+GG+ F++ G L L++ ++ G I++ + N+D G+ +THPN++K+LF
Sbjct: 290 EEKLNVTVKRDGGVNNFDVQGTLALQVLNDTDGFIQLQIENQDVPGLSFKTHPNINKDLF 349
Query: 535 KSKTEIGLKNPSKPFPLN-NDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYE 593
S+ +G K+P++PFP N+ ++KWR DES LPLS+NCWPS +G+ VNIEYE
Sbjct: 350 NSQQVVGAKDPNRPFPSGQNETPLVKWRIHGMDESSLPLSVNCWPSVSGNETY-VNIEYE 408
Query: 594 LEHEEKELNQVTISIPLP 611
E +L+ V ISIPLP
Sbjct: 409 -AAEMFDLHNVVISIPLP 425
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQ 55
PEY +LDE V AF LIFAFDE + LG +E+V + QV+ + EM+SHEEK ++
Sbjct: 91 PEYSPSLDEEGVCKTAFELIFAFDEAICLGNKENVTVQQVKQYCEMESHEEKAHK 145
>sp|Q93Y22|COPD_ARATH Coatomer subunit delta OS=Arabidopsis thaliana GN=At5g05010 PE=1
SV=2
Length = 527
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 132/172 (76%), Gaps = 5/172 (2%)
Query: 71 GIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTK 130
G IVSR +V+M+R RIEGLLAAFPKL+ GKQHT++ET++VRYVYQP+E L++LL+TTK
Sbjct: 13 GKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQPIEALFLLLVTTK 72
Query: 131 TSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRT 190
SNILEDL TL L S+++PEY +LDE ++ +F LIFAFDE+++LG++ESV +AQV+
Sbjct: 73 QSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLGHKESVTVAQVKQ 132
Query: 191 FVEMDSHEEKVYQAVRK---REAENKMREKAKELKRQRMESAKK--FPKMGS 237
+ EM+SHEEK+++ V + + ++ M+ KA E+ + ++E K F MGS
Sbjct: 133 YCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNKPGGFSSMGS 184
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 95/143 (66%), Gaps = 5/143 (3%)
Query: 472 LRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDK 531
L EE+L +++ R+GG+ +F++ G L+L+I +++ G ++V +A + I +THPN+++
Sbjct: 287 LTVEEKLNVALRRDGGLSSFDMQGTLSLQILNQEDGFVQVQIATGENPEILFKTHPNINR 346
Query: 532 ELFKSKTEIGLKNPSKPFPL---NNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDV 588
++F ++ +GLK P +PFP + +G+L+WR DES +PL+INCWPS +G+ V
Sbjct: 347 DMFNNENILGLKRPDQPFPTGQGGDGVGLLRWRMQRADESMVPLTINCWPSVSGN-ETYV 405
Query: 589 NIEYELEHEEKELNQVTISIPLP 611
++EYE +L V IS+PLP
Sbjct: 406 SLEYE-ASSMFDLTNVIISVPLP 427
Score = 72.8 bits (177), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 46/57 (80%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAV 57
PEY +LDE ++ +F LIFAFDE+++LG++ESV +AQV+ + EM+SHEEK+++ V
Sbjct: 91 PEYSMSLDEEGISRASFELIFAFDEVISLGHKESVTVAQVKQYCEMESHEEKLHKLV 147
>sp|P49661|COPD3_ORYSJ Coatomer subunit delta-3 OS=Oryza sativa subsp. japonica
GN=Os01g0833700 PE=2 SV=2
Length = 518
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 132/176 (75%), Gaps = 8/176 (4%)
Query: 71 GIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTK 130
G A+VSRQFV+M+R RI+GLLAAFPKL+ SGKQHT+VET++VRYVYQP+E LY+LLIT K
Sbjct: 13 GKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQPIEALYLLLITNK 72
Query: 131 TSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRT 190
SNILEDL+TLRL S++IPEY +LDE V AF L+FAF E ++LG +E+V +AQV+
Sbjct: 73 QSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLGNKENVTVAQVKQ 132
Query: 191 FVEMDSHEEKVYQAVRK---REAENKMREKAKELKRQRMESAKKFPKMGSGVGVGS 243
+ EM+SHEEK+++ V + E ++ MR K E+++ + + K P G G GS
Sbjct: 133 YCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSKTDRGK--PDKG---GFGS 183
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 95/138 (68%), Gaps = 3/138 (2%)
Query: 475 EEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKELF 534
EE+L ++V R+GG+ F++ G L L+I ++ G I++ + N+D G+ +THPN++KELF
Sbjct: 285 EEKLNVTVKRDGGVSNFDIQGTLALQILNDTDGFIQLQIENQDVPGLNFKTHPNINKELF 344
Query: 535 KSKTEIGLKNPSKPFPLN-NDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYE 593
S+ +G K+P++PFP N+ ++KWR +ES LPL++NCWPS +G+ VNIEYE
Sbjct: 345 NSQQIVGAKDPNRPFPSGQNETPLVKWRIQELNESSLPLAVNCWPSVSGNETY-VNIEYE 403
Query: 594 LEHEEKELNQVTISIPLP 611
E +L+ V ISIPLP
Sbjct: 404 -ASEMFDLHNVVISIPLP 420
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAV 57
PEY +LDE V AF L+FAF E ++LG +E+V +AQV+ + EM+SHEEK+++ V
Sbjct: 91 PEYAPSLDEEGVCKAAFELLFAFIEAISLGNKENVTVAQVKQYCEMESHEEKLHKLV 147
>sp|Q55EZ6|COPD_DICDI Coatomer subunit delta OS=Dictyostelium discoideum GN=copd PE=3
SV=1
Length = 540
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 129/171 (75%), Gaps = 4/171 (2%)
Query: 60 VCYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPL 119
V + C G A++SRQF EMT++R+EGLLAAFPKL+ G+QHTF+ET+++RYVYQPL
Sbjct: 2 VVLAAAICTKNGKALLSRQFSEMTKSRVEGLLAAFPKLIGLGRQHTFIETENIRYVYQPL 61
Query: 120 EKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGY 179
E LY++LIT K SNILEDLETL L ++++PEY DE +++ NAF LIF FDE++A+GY
Sbjct: 62 ESLYIVLITNKNSNILEDLETLHLLAKLVPEYS-NFDEYDISKNAFELIFTFDEVIAMGY 120
Query: 180 RESVNLAQVRTFVEMDSHEEKVY---QAVRKREAENKMREKAKELKRQRME 227
+E V L Q++ F+ M+SHEE+ + + ++++EA+ KAKE++R R E
Sbjct: 121 KERVTLQQIKHFISMESHEEERFRMEEKIKQKEAQILASSKAKEIERMRHE 171
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Query: 470 IHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKV-LLANKDTRGIQMQTHPN 528
+H+ EE V +G +E+ ++ G L+++I+D+ G++KV L K ++ Q THPN
Sbjct: 307 VHITVEESFTSFVESDGTVESIDIKGGLSVQINDQSLGKVKVNLKQGKLSKQFQFITHPN 366
Query: 529 VDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDV 588
+DK LF ++ + L++ K FP G+LKWR + ES +P+ +NCWPS G V
Sbjct: 367 IDKALFGEQSVLRLRDGGKGFPSG---GILKWRCKTNQESMMPIRVNCWPSP-GRDSTTV 422
Query: 589 NIEYELEHEEKELNQVTISIPLP 611
N+EY+ EL V I IP P
Sbjct: 423 NLEYD-SLVGYELKSVFIVIPNP 444
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKV 60
PEY DE +++ NAF LIF FDE++A+GY+E V L Q++ F+ M+SHEE+ ++ K+
Sbjct: 91 PEYS-NFDEYDISKNAFELIFTFDEVIAMGYKERVTLQQIKHFISMESHEEERFRMEEKI 149
>sp|O74496|COPD_SCHPO Coatomer subunit delta OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ret2 PE=3 SV=1
Length = 240
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 132/191 (69%), Gaps = 10/191 (5%)
Query: 71 GIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTK 130
G AI+SRQF EM+R R+E LL++FP L+S Q+T VE+D+VR+VYQPL++LY++LIT
Sbjct: 13 GKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQPLDELYIVLITNL 72
Query: 131 TSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRT 190
SNIL+D++TL L S+V+ C +L+E E+ + AF + AFDE +LGYR++V+L Q++T
Sbjct: 73 QSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRDNVSLTQIKT 132
Query: 191 FVEMDSHEEKVYQAVRKR---EAENKMREKAKELKRQRMESAKK----FPKMGSGVGVG- 242
++EM+SHEEK+ + V + EA + + + K+L+ Q+ E+A++ P + +G
Sbjct: 133 YLEMESHEEKIQEIVSRNKEIEATEERKRRIKQLELQKKEAARRAAQNLPSADAYESIGY 192
Query: 243 --SNPYFGSSS 251
N F +S+
Sbjct: 193 QTVNTTFATSN 203
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 43/56 (76%)
Query: 4 CRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK 59
C +L+E E+ + AF + AFDE +LGYR++V+L Q++T++EM+SHEEK+ + V +
Sbjct: 94 CSSLEEREILEYAFEIFTAFDEATSLGYRDNVSLTQIKTYLEMESHEEKIQEIVSR 149
>sp|P43621|COPD_YEAST Coatomer subunit delta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RET2 PE=1 SV=3
Length = 546
Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 121/195 (62%), Gaps = 7/195 (3%)
Query: 60 VCYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSS-GKQHTFVETDSVRYVYQP 118
V S T R G ++SRQF ++++ R+ LL+ F L+S HTFVE VRYVY+P
Sbjct: 3 VLAASITTRQ-GKPLLSRQFKDLSKDRVLELLSNFQNLVSEISSDHTFVEDKHVRYVYRP 61
Query: 119 LEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVAL- 177
+ Y++LIT + SNI++DL TL LFS+ I Y + + E+ NAF ++ +FDEIV++
Sbjct: 62 FDNYYIILITNRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSFDEIVSMG 121
Query: 178 GYRESVNLAQVRTFVEMDSHEEKVYQAVRKR---EAENKMREKAKELKRQRMESAKKFPK 234
GY+E+++ QV+T++ M+SHEE++ + + + EA + + +AKE+ R+ E F
Sbjct: 122 GYKENLSFTQVQTYLSMESHEERIQEIIERNKEIEATEERKRRAKEIARKEHERKHGFMS 181
Query: 235 MGSGVGVGSNPYFGS 249
+G G+N + GS
Sbjct: 182 -SNGDYDGANRFMGS 195
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 78/135 (57%), Gaps = 8/135 (5%)
Query: 483 GRNGGIETFELHGLLTLRISDEKYGRIKVLLANK-DTR--GIQMQTHPNVDKELFKSKTE 539
R+G I + EL G+L LRI+D + LA+ D R Q +THPN+DK+ F S
Sbjct: 304 SRDGTIHSSELKGVLELRINDHDLSHSNLKLADSIDVRDKSFQFKTHPNIDKQSFLSTKL 363
Query: 540 IGLKNPSKPFPLNN-DIGVLKWR--FTSTDESCLPLSINCWPSDNGS-GGCDVNIEYELE 595
I L++ SK FP N+ +GVL+WR + D+S +PL++ W S + S G DV IEYE
Sbjct: 364 ISLRDKSKAFPANDQSLGVLRWRKVAPAEDDSLIPLTLTTWVSPSESQQGFDVIIEYE-S 422
Query: 596 HEEKELNQVTISIPL 610
E EL V +IP+
Sbjct: 423 VLETELADVIFTIPV 437
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 3 YCRTLDENEVTDNAFSLIFAFDEIVALG-YRESVNLAQVRTFVEMDSHEEKVYQAVRK 59
Y + + E+ NAF ++ +FDEIV++G Y+E+++ QV+T++ M+SHEE++ + + +
Sbjct: 94 YLSSFQDQEIFHNAFEILSSFDEIVSMGGYKENLSFTQVQTYLSMESHEERIQEIIER 151
>sp|Q0J649|COPD4_ORYSJ Coatomer subunit delta-4 OS=Oryza sativa subsp. japonica
GN=Os08g0368000 PE=2 SV=1
Length = 376
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 91/138 (65%), Gaps = 3/138 (2%)
Query: 475 EEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKELF 534
EE+L ++V R+GG+ F++ G L L + ++ G I + + ++D G+ +THPN++K+LF
Sbjct: 142 EEKLNVAVKRDGGVNNFDVQGTLALLVLNDADGLILLQIESQDIPGLSFKTHPNINKDLF 201
Query: 535 KSKTEIGLKNPSKPFPLN-NDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYE 593
S+ +G K+P +PFP N+ ++KWR +ES LPLS+NCWPS G+ VNIEYE
Sbjct: 202 NSQQILGAKDPIRPFPSGQNETPLVKWRIQGMNESSLPLSVNCWPSILGN-ETYVNIEYE 260
Query: 594 LEHEEKELNQVTISIPLP 611
E +L+ V ISIPLP
Sbjct: 261 -ASEMFDLHSVIISIPLP 277
>sp|Q09718|AP2M_SCHPO AP-2 complex subunit mu OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=apm4 PE=1 SV=1
Length = 446
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 97 LMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLD 156
L ++ +H V S Y+Y E LY++ IT N++ LE L + + Y L+
Sbjct: 37 LTNTDYRHPIVSIGSSTYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLN 96
Query: 157 ENEVTDNAFSLIFAFDEIVALG 178
EN V DN + DE++ G
Sbjct: 97 ENTVKDNVSFIFELLDEMIDYG 118
>sp|Q2PWT8|AP4M1_RAT AP-4 complex subunit mu-1 OS=Rattus norvegicus GN=Ap4m1 PE=1 SV=1
Length = 453
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/105 (19%), Positives = 51/105 (48%)
Query: 98 MSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDE 157
+ G+ + D +++ LY++ T++ + LE L + ++ +YC +L+E
Sbjct: 40 LPGGESPVVMYHDDRHFIHIRHSGLYLVATTSENVSPFSLLELLSRLATLLGDYCGSLNE 99
Query: 158 NEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVY 202
++ N + DE++ GY ++ + +R F++ ++ K +
Sbjct: 100 GTISRNVALVYELLDEVLDYGYVQTTSTDMLRNFIQTEAAVSKPF 144
>sp|Q9JKC7|AP4M1_MOUSE AP-4 complex subunit mu-1 OS=Mus musculus GN=Ap4m1 PE=2 SV=1
Length = 449
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 76 SRQFVEMTRARIEGLLAA-FPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNI 134
R E+ ++ GL P +M G +H +++ LY++ T + +
Sbjct: 26 GRDVAELFYRKLTGLPGGESPVVMYHGDRH---------FIHIRHSGLYLVATTLENVSP 76
Query: 135 LEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEM 194
LE L + ++ +YC +L+E ++ N + DE++ GY ++ + +R F++
Sbjct: 77 FSLLELLSRLATLLGDYCGSLNEGTISRNVALVYELLDEVLDYGYVQTTSTEMLRNFIQT 136
Query: 195 DSHEEKVY 202
++ K +
Sbjct: 137 EAVVSKPF 144
>sp|O00189|AP4M1_HUMAN AP-4 complex subunit mu-1 OS=Homo sapiens GN=AP4M1 PE=1 SV=2
Length = 453
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 41/75 (54%)
Query: 122 LYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRE 181
LY+++ T++ + LE L + ++ +YC +L E ++ N + DE++ GY +
Sbjct: 64 LYLVVTTSENVSPFSLLELLSRLATLLGDYCGSLGEGTISRNVALVYELLDEVLDYGYVQ 123
Query: 182 SVNLAQVRTFVEMDS 196
+ + +R F++ ++
Sbjct: 124 TTSTEMLRNFIQTEA 138
>sp|Q54HS9|AP1M_DICDI AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1
SV=1
Length = 428
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 43/92 (46%)
Query: 107 VETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFS 166
++ D + Y+Y L++L T + +N L L V EY + L+E + DN
Sbjct: 49 IQEDGISYIYVKHNNLFLLATTERNANAATILLFLYKMIEVFNEYFKELEEESIRDNFVV 108
Query: 167 LIFAFDEIVALGYRESVNLAQVRTFVEMDSHE 198
+ DE++ GY +S ++ ++ + ++
Sbjct: 109 IYELMDEMMDFGYPQSTEPKILQEYITQEGYK 140
>sp|Q9HFE5|AP1M1_SCHPO AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apm1 PE=1 SV=1
Length = 426
Score = 37.4 bits (85), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 110 DSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIF 169
+ + Y+Y +Y+L ++ S+ +E L LR + V +Y + L E + DN F L++
Sbjct: 53 EGINYIYIHHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDN-FVLVY 111
Query: 170 A-FDEIVALGYRESVNLAQVRTFVEMDSHEEK 200
DEI+ G+ ++ ++ ++ S+ K
Sbjct: 112 ELLDEIMDFGFPQTTETKILQEYITQTSNTVK 143
>sp|Q29RY8|AP4M1_BOVIN AP-4 complex subunit mu-1 OS=Bos taurus GN=AP4M1 PE=2 SV=1
Length = 452
Score = 36.6 bits (83), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 40/75 (53%)
Query: 122 LYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRE 181
LY++ T++ + LE L + ++ +YC +L E ++ N + DE++ GY +
Sbjct: 64 LYLVATTSENISPFSLLELLSRLATLLGDYCGSLGEATISRNVALVYELLDEVLDYGYVQ 123
Query: 182 SVNLAQVRTFVEMDS 196
+ + +R F++ ++
Sbjct: 124 TTSTEVLRNFIQTEA 138
>sp|O60110|OCA3_SCHPO TPR repeat protein oca3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=oca3 PE=4 SV=3
Length = 282
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 12 VTDNAF-SLIFAFDEIVALGYRESVNLAQVRT--FVEMDSHEEKVYQAVRKVCYLSRTCR 68
V+ AF S IF ++E+V L E A++ FV S+ + +++ C C
Sbjct: 150 VSVEAFESAIFCYEEMVLLQPFEPRLFARLGDLYFVLAQSNATNYWFSLKHYCRSVEICE 209
Query: 69 S-----IGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQ 117
GI+ +Q +E++R ++ LL+ + +S TF +T+SVR +YQ
Sbjct: 210 EYFHGWFGISKCCQQLLELSRTELKRLLSKVNEKISD----TFPDTESVRQLYQ 259
>sp|Q3SXM0|DC4L1_HUMAN DDB1- and CUL4-associated factor 4-like protein 1 OS=Homo sapiens
GN=DCAF4L1 PE=2 SV=1
Length = 396
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 422 IHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLRQEEQLIIS 481
+ + QEEQ +++ G I+ ++L +R + G+ + + L +H+ +EE ++++
Sbjct: 276 VQILQEEQCLMASDMTGKIKLWDLRATKCVR---QYEGHVNESAY-LPLHVHEEEGIVVA 331
Query: 482 VGRNGGIETFELHGLLTLRISDEKY 506
VG++ + LH LR Y
Sbjct: 332 VGQDCYTRIWSLHDAHLLRTIPSPY 356
>sp|Q58DC2|DCAF4_BOVIN DDB1- and CUL4-associated factor 4 OS=Bos taurus GN=DCAF4 PE=2 SV=1
Length = 494
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 422 IHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLRQEEQLIIS 481
+ + QEEQ +++ G I+ ++L +R + G+ + H L +H+ +EE ++++
Sbjct: 375 VQILQEEQCLMASDMAGTIKLWDLRTTKCIR---QYEGHVNEYAH-LPLHVHEEEGIMVA 430
Query: 482 VGRNGGIETFELHGLLTLRISDEKY 506
VG++ + LH LR Y
Sbjct: 431 VGQDCYTRIWSLHDGQLLRTIPSPY 455
>sp|P35603|AP2M_CAEEL AP-2 complex subunit mu OS=Caenorhabditis elegans GN=dpy-23 PE=2
SV=2
Length = 441
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 122 LYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAF-DEIVALGYR 180
+++ +T + N E L+ F+ + Y L+E V +N F LI+ DEI+ GY
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNN-FVLIYELLDEILDFGYP 121
Query: 181 ESVNLAQVRTFV 192
++ + ++TF+
Sbjct: 122 QNTDPGVLKTFI 133
>sp|Q9BXS5|AP1M1_HUMAN AP-1 complex subunit mu-1 OS=Homo sapiens GN=AP1M1 PE=1 SV=3
Length = 423
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 42/87 (48%)
Query: 112 VRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAF 171
VR+++ LY++ + K + + L +V EY + L+E + DN +
Sbjct: 55 VRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELL 114
Query: 172 DEIVALGYRESVNLAQVRTFVEMDSHE 198
DE++ GY ++ + ++ ++ + H+
Sbjct: 115 DELMDFGYPQTTDSKILQEYITQEGHK 141
>sp|Q2KJ81|AP1M1_BOVIN AP-1 complex subunit mu-1 OS=Bos taurus GN=AP1M1 PE=1 SV=3
Length = 423
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 42/87 (48%)
Query: 112 VRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAF 171
VR+++ LY++ + K + + L +V EY + L+E + DN +
Sbjct: 55 VRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELL 114
Query: 172 DEIVALGYRESVNLAQVRTFVEMDSHE 198
DE++ GY ++ + ++ ++ + H+
Sbjct: 115 DELMDFGYPQTTDSKILQEYITQEGHK 141
>sp|Q32Q06|AP1M1_RAT AP-1 complex subunit mu-1 OS=Rattus norvegicus GN=Ap1m1 PE=1 SV=3
Length = 423
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 42/87 (48%)
Query: 112 VRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAF 171
VR+++ LY++ + K + + L +V EY + L+E + DN +
Sbjct: 55 VRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELL 114
Query: 172 DEIVALGYRESVNLAQVRTFVEMDSHE 198
DE++ GY ++ + ++ ++ + H+
Sbjct: 115 DELMDFGYPQTTDSKILQEYITQEGHK 141
>sp|P35585|AP1M1_MOUSE AP-1 complex subunit mu-1 OS=Mus musculus GN=Ap1m1 PE=1 SV=3
Length = 423
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 42/87 (48%)
Query: 112 VRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAF 171
VR+++ LY++ + K + + L +V EY + L+E + DN +
Sbjct: 55 VRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELL 114
Query: 172 DEIVALGYRESVNLAQVRTFVEMDSHE 198
DE++ GY ++ + ++ ++ + H+
Sbjct: 115 DELMDFGYPQTTDSKILQEYITQEGHK 141
>sp|A9V549|EIF3A_MONBE Eukaryotic translation initiation factor 3 subunit A OS=Monosiga
brevicollis GN=33388 PE=3 SV=1
Length = 1052
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 198 EEKVYQAVRKREAENKMREKAKELKRQRMES--AKKFPKMGSGVGVGSNPYFGSSSYSSS 255
E++ + ++ EAE K E+A +L+RQR E A++ K+ + S P + S+ S +
Sbjct: 836 EQERQEQLKLEEAERKKMEEATKLQRQREEQVRAREQEKLSNLSAQTSQPTWKRSARSDA 895
Query: 256 PVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRK 291
P T S +S + R + FR R G +
Sbjct: 896 PTTAAPSSMRVSSWKGDASDDSGRSQPFRPSRGGER 931
>sp|Q7NI15|CHLN_GLOVI Light-independent protochlorophyllide reductase subunit N
OS=Gloeobacter violaceus (strain PCC 7421) GN=chlN PE=3
SV=1
Length = 469
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 100 SGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSN-ILEDLETLRLFSRVIPEYCRT-LDE 157
+G HTF V ++YQ +E + L+I TKT L++ + +F+ P Y L+E
Sbjct: 17 TGNYHTFCPISCVAWLYQKIEDSFFLVIGTKTCGYFLQNAMGVMIFAE--PRYAMAELEE 74
Query: 158 NEVTDNAFSLIFAFDEI 174
+V + + A+DE+
Sbjct: 75 GDVN----AKLNAYDEL 87
>sp|P05328|TRPG_ASPNG Anthranilate synthase component 2 OS=Aspergillus niger GN=trpC PE=4
SV=1
Length = 770
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 367 DSYSIFLFTLVMQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLL--SIMFLLHRIHL 424
D ++ + +V PKP S + + P ATSV Y F H K+L LL +
Sbjct: 572 DDVALPISQVVRSTPKPASQALHTSQEPPAATSVEY---FDHSAKILRHPSRALLVGVFQ 628
Query: 425 RQEEQLIISVGRNGGIETFELHG 447
Q I+S + G++ +LHG
Sbjct: 629 NQPLDYILSQQQKLGLDVVQLHG 651
>sp|P05659|MYSN_ACACA Myosin-2 heavy chain, non muscle OS=Acanthamoeba castellanii PE=3
SV=1
Length = 1509
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 290 RKSLENESYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKS 337
+KSLE E R ++ + K A S+KA +LG + D S VD LKS
Sbjct: 1061 KKSLEEELAQTRAQLEEEKSGKEAASSKAKQLGQQLEDARSEVDSLKS 1108
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,057,886
Number of Sequences: 539616
Number of extensions: 8757939
Number of successful extensions: 27649
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 27478
Number of HSP's gapped (non-prelim): 165
length of query: 611
length of database: 191,569,459
effective HSP length: 123
effective length of query: 488
effective length of database: 125,196,691
effective search space: 61095985208
effective search space used: 61095985208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)