Query psy12905
Match_columns 611
No_of_seqs 261 out of 479
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 22:44:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2635|consensus 100.0 4E-110 9E-115 875.3 34.9 413 59-611 1-416 (512)
2 KOG0938|consensus 100.0 1.4E-41 2.9E-46 349.7 23.6 309 61-611 2-340 (446)
3 KOG0937|consensus 100.0 5.2E-41 1.1E-45 356.1 22.9 297 62-611 2-316 (424)
4 KOG2635|consensus 100.0 4.7E-32 1E-36 286.6 4.3 59 1-59 91-149 (512)
5 KOG2740|consensus 99.9 6.1E-24 1.3E-28 221.4 21.6 281 61-582 2-285 (418)
6 PF00928 Adap_comp_sub: Adapto 99.9 9.5E-25 2.1E-29 218.6 12.1 140 464-611 9-155 (262)
7 PF01217 Clat_adaptor_s: Clath 99.9 9.2E-23 2E-27 188.7 12.2 136 61-196 2-139 (141)
8 COG5030 APS2 Clathrin adaptor 98.3 3.4E-06 7.4E-11 79.5 9.2 128 62-189 3-132 (152)
9 KOG0934|consensus 98.0 1E-05 2.2E-10 76.2 5.9 114 66-179 7-122 (145)
10 KOG2677|consensus 97.9 5.4E-06 1.2E-10 93.1 3.5 137 465-611 584-752 (922)
11 KOG0935|consensus 97.8 0.00011 2.4E-09 68.1 8.7 122 65-186 6-130 (143)
12 KOG3343|consensus 97.1 0.0076 1.6E-07 58.6 11.9 142 61-203 9-154 (175)
13 PF10291 muHD: Muniscin C-term 97.0 0.0084 1.8E-07 62.0 12.7 130 469-611 2-151 (257)
14 KOG0936|consensus 96.9 0.005 1.1E-07 59.4 8.7 130 61-190 2-139 (182)
15 PF01217 Clat_adaptor_s: Clath 93.2 0.038 8.3E-07 51.4 1.2 46 2-47 93-138 (141)
16 PF03164 Mon1: Trafficking pro 92.3 0.78 1.7E-05 50.7 9.9 76 64-142 14-96 (415)
17 PF08923 MAPKK1_Int: Mitogen-a 87.7 2.3 5E-05 39.6 7.6 91 61-151 17-115 (119)
18 PF04099 Sybindin: Sybindin-li 69.8 24 0.00052 33.6 8.1 90 61-152 1-115 (142)
19 KOG0997|consensus 65.6 26 0.00057 40.0 8.5 136 64-207 120-275 (523)
20 COG5541 RET3 Vesicle coat comp 57.3 10 0.00022 37.4 3.1 126 61-186 8-144 (187)
21 COG5122 TRS23 Transport protei 53.5 50 0.0011 31.2 6.8 91 59-152 1-106 (134)
22 KOG3088|consensus 42.0 35 0.00076 36.7 4.5 23 208-230 70-92 (313)
23 PF15001 AP-5_subunit_s1: AP-5 36.1 1E+02 0.0022 31.4 6.4 74 111-184 103-177 (189)
24 PRK07003 DNA polymerase III su 29.5 7.2E+02 0.016 30.7 13.0 116 68-206 117-254 (830)
25 KOG3190|consensus 29.1 2E+02 0.0043 30.4 7.4 75 148-233 117-202 (256)
26 PF13774 Longin: Regulated-SNA 29.1 3.1E+02 0.0068 23.1 7.5 51 103-153 15-65 (83)
27 KOG3369|consensus 25.0 2.6E+02 0.0057 28.4 7.1 48 103-152 122-170 (199)
28 PF03234 CDC37_N: Cdc37 N term 24.7 28 0.00061 34.8 0.4 13 522-534 17-29 (177)
29 PRK07764 DNA polymerase III su 23.6 5.5E+02 0.012 31.5 10.9 29 68-100 118-146 (824)
30 TIGR02215 phage_chp_gp8 phage 22.9 72 0.0016 31.9 2.9 51 31-83 10-63 (188)
31 KOG2007|consensus 22.6 2E+02 0.0044 33.5 6.5 60 156-218 481-547 (586)
32 PF00235 Profilin: Profilin; 22.1 4.2E+02 0.0092 23.7 7.5 59 61-121 16-75 (121)
33 PF13986 DUF4224: Domain of un 22.1 78 0.0017 25.0 2.3 43 21-80 3-46 (47)
34 PRK02939 lipoprotein; Reviewed 21.3 6.8E+02 0.015 26.4 9.5 101 474-595 60-174 (236)
35 PF08542 Rep_fac_C: Replicatio 20.7 1.6E+02 0.0034 25.0 4.1 53 162-214 18-72 (89)
36 PF06102 DUF947: Domain of unk 20.6 3.8E+02 0.0082 26.5 7.3 50 148-207 38-90 (168)
37 PF11372 DUF3173: Domain of un 20.1 59 0.0013 27.2 1.4 19 172-190 7-25 (59)
No 1
>KOG2635|consensus
Probab=100.00 E-value=4.3e-110 Score=875.27 Aligned_cols=413 Identities=55% Similarity=0.864 Sum_probs=353.4
Q ss_pred HHhhhhhhccCCCceeeeecccccchHHHHHHHhhhhhcccCCCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHH
Q psy12905 59 KVCYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDL 138 (611)
Q Consensus 59 mvvlaa~Il~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~~~g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl 138 (611)
|||+||+||++.||+++|||||||+|.|||+||++||+|+..|+||||||+++|||||||+|++|+||||+++|||++||
T Consensus 1 Mvvlaa~i~t~~Gk~ivsRqf~~Msr~RIEgLl~aFpkLv~~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIleDl 80 (512)
T KOG2635|consen 1 MVVLAASINTKTGKAIVSRQFREMSRSRIEGLLAAFPKLVSAGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNILEDL 80 (512)
T ss_pred CeEEEEEEeecCCceeeehHhHhhhHHHHHHHHHHhHHhhccCCCccEEecccEEEEEEecccEEEEEEeccccchhhHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHHHHHH---HHHHHHHH
Q psy12905 139 ETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK---REAENKMR 215 (611)
Q Consensus 139 ~~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~~i~~---~EAke~~k 215 (611)
+||++|++++++||.+++|++|.+|+|+|+++|||++++||+|++++.|||+|++|||||||||++|+| +|||++||
T Consensus 81 ~TL~Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eMdSHEEKi~e~v~~nke~ea~q~mk 160 (512)
T KOG2635|consen 81 ETLRLFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEMDSHEEKIHELVMRNKEREAKQEMK 160 (512)
T ss_pred HHHHHHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhccccHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhccccccCC
Q psy12905 216 EKAKELKRQRMESAKKFPKMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSLEN 295 (611)
Q Consensus 216 rkAkel~~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~ 295 (611)
||||||+|+|+|+.|+++. ..+|+. .++++++++.+...+ . ..+.+.+ ..
T Consensus 161 rKaKElqr~r~ea~rrgg~--~~~~~~---~~~s~g~~~~s~~~~-~-------~~~~~~~-----------------~~ 210 (512)
T KOG2635|consen 161 RKAKELQRARKEAERRGGS--LNPGFD---AIGSSGYSSVSTTNA-I-------NRVESIA-----------------QK 210 (512)
T ss_pred HHHHHHHHHHHhhhccccc--cCCCcc---ccccccccCCcccch-h-------hcccccc-----------------cc
Confidence 9999999999999998742 223332 233333322221111 1 1111110 00
Q ss_pred CcchhhhhhhcccccCCcccchhhhccCCCCcchhhHHhhhhcCcccccCCcccccccccCCCCcccccCCCchhhhhhh
Q psy12905 296 ESYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVSTLSSKIPTTNISNMDSYSIFLFT 375 (611)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~kgmkLG~k~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (611)
. + ..++++.+.+++|||+||+|.+..+.|+|+|++||+.+..++. .....++.+|.
T Consensus 211 ~------~-~~sa~~~~s~pak~mklG~k~~~s~~~~d~Lk~ege~ia~~~s--~~g~~s~aap~--------------- 266 (512)
T KOG2635|consen 211 P------K-QQSAAKASSAPAKAMKLGKKTKNSDTFVDKLKGEGERIAGASS--AIGSASSAAPP--------------- 266 (512)
T ss_pred c------c-ccccccCCCCCchhhhhcccccchhhHHHHhhccccccccccc--cccccccCCCC---------------
Confidence 0 0 1112223445589999999998899999999999998776321 11111111110
Q ss_pred hhccCCCCCccccccccCCCcccccccccccccchhhHHHHHHHhhhhhhhhhhhhhhhccCCCcceeeeccceeeeecc
Q psy12905 376 LVMQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLLSIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISD 455 (611)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (611)
+
T Consensus 267 -------------------------------------------------------~------------------------ 267 (512)
T KOG2635|consen 267 -------------------------------------------------------P------------------------ 267 (512)
T ss_pred -------------------------------------------------------C------------------------
Confidence 0
Q ss_pred cccCCCCCCCcccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCCCCCCccccCcccCccccc
Q psy12905 456 EKYGYFGDLGHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKELFK 535 (611)
Q Consensus 456 ~~~~~~~~~~~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~~~~~qfKtHPnVDK~~F~ 535 (611)
.++.++.+.|||.|+|||++.|+|||+|.|+|++|+|+|+|.|+++++|.|+|+++.++++||||||||||+.|.
T Consensus 268 -----~~p~v~~e~v~i~ieEkln~~~~RDGgi~s~E~qG~lsLrI~d~e~~~i~lkl~n~~~~g~q~ktHPNlDK~~f~ 342 (512)
T KOG2635|consen 268 -----TAPDVPEESVHIVIEEKLNVRLSRDGGIKSGEVQGTLSLRIKDEEYGDIELKLANGRDKGTQLKTHPNLDKKVFL 342 (512)
T ss_pred -----CCCCCccceEEEEEeeeEeEEEcccCCccceeeeeeEEEEEccccccceEEEEcCCCCcceeeeeCCCcchhhhc
Confidence 233457777999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEeeccccccceeEEEccCC
Q psy12905 536 SKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEHEEKELNQVTISIPLP 611 (611)
Q Consensus 536 s~~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl~~~~~~L~dV~I~IPlP 611 (611)
+.++|+||+|+|+||+|++|||||||++..||+.+||+|||||+++++ +|+|+||||+ ..+.+|+||.|+||+|
T Consensus 343 s~s~iglk~~~K~FPvn~~VGvLkWR~~~~des~iPlTincWPSes~~-g~dV~iEYe~-~~~~eL~dV~i~iPlP 416 (512)
T KOG2635|consen 343 SSSLIGLKRPEKPFPVNSDVGVLKWRMVDEDESEIPLTINCWPSESGN-GYDVNIEYEA-VLECELNDVIITIPLP 416 (512)
T ss_pred cccccccccCCCCCCcCCcceEEEEeecccccccCceEEEeccccCCC-CeEEEEEEee-hhcccccceEEEeecc
Confidence 999999999999999999999999999999999999999999999995 5999999999 4558899999999998
No 2
>KOG0938|consensus
Probab=100.00 E-value=1.4e-41 Score=349.71 Aligned_cols=309 Identities=18% Similarity=0.271 Sum_probs=248.6
Q ss_pred hhhhhhccCCCceeeeeccc-ccchHHHHHHHhhhhhcc-cC-CCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHH
Q psy12905 61 CYLSRTCRSIGIAIVSRQFV-EMTRARIEGLLAAFPKLM-SS-GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILED 137 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyr-disr~riE~lL~~FpkL~-~~-g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~d 137 (611)
+.+++|.+.+|+.||+|-|| |+-|+..| .|+-.+ .+ .--||+...++..|+|.+++|||+|++|+.|.|++.+
T Consensus 2 isglfi~n~rGevlink~fr~dlkrs~~d----iFRv~vi~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v 77 (446)
T KOG0938|consen 2 ISGLFIYNLRGEVLINKTFRDDLKRSIVD----IFRVQVINNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAV 77 (446)
T ss_pred cceEEEEeccCcEEEehhhhhhhhhhHHH----HHHHhhhhccccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhH
Confidence 57889999999999999999 99998877 787763 33 3357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHHHHHHHHHHHHHHHH
Q psy12905 138 LETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKREAENKMREK 217 (611)
Q Consensus 138 l~~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~~i~~~EAke~~krk 217 (611)
++||..+++++..||+.++||.|++||+.|||+||||+||||||+++...|+.|++++..+-
T Consensus 78 ~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~Vrs------------------ 139 (446)
T KOG0938|consen 78 FEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGVRS------------------ 139 (446)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhhhc------------------
Confidence 99999999999999999999999999999999999999999999999999999887543211
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhccccccCCCc
Q psy12905 218 AKELKRQRMESAKKFPKMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSLENES 297 (611)
Q Consensus 218 Akel~~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 297 (611)
+ +|.-+ ..++++.. .++.
T Consensus 140 ---------------~-----g~~ls--------~k~s~~sq-------------~~~~--------------------- 157 (446)
T KOG0938|consen 140 ---------------M-----GGVLS--------SKSSPTSQ-------------ATEL--------------------- 157 (446)
T ss_pred ---------------c-----ccccC--------CcCCCCcc-------------cccc---------------------
Confidence 1 01000 00000000 0000
Q ss_pred chhhhhhhcccccCCcccchhhhccCCCCcchhhHHhhhhcCcccccCCcccccccccCCCCcccccCCCchhhhhhhhh
Q psy12905 298 YPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVSTLSSKIPTTNISNMDSYSIFLFTLV 377 (611)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~kgmkLG~k~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (611)
. + +
T Consensus 158 -----~-s------s----------------------------------------------------------------- 160 (446)
T KOG0938|consen 158 -----R-S------S----------------------------------------------------------------- 160 (446)
T ss_pred -----c-c------c-----------------------------------------------------------------
Confidence 0 0 0
Q ss_pred ccCCCCCccccccccCCCcccccccccccccchhhHHHHHHHhhhhhhhhhhhhhhhccCCCcceeeeccceeeeecccc
Q psy12905 378 MQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLLSIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEK 457 (611)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (611)
++.|.++-|-...+
T Consensus 161 ------------------------------------------------------------------qv~G~i~WRr~Gi~ 174 (446)
T KOG0938|consen 161 ------------------------------------------------------------------QVTGKIGWRREGIK 174 (446)
T ss_pred ------------------------------------------------------------------ccccccccccccce
Confidence 00011111111112
Q ss_pred cCCCCCCCcccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCC-----------C--------
Q psy12905 458 YGYFGDLGHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKD-----------T-------- 518 (611)
Q Consensus 458 ~~~~~~~~~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~-----------~-------- 518 (611)
| .+++|+++|.|++|+.|+++|.|.+++|.|.+.|+..+.|.|.+++.||+.- +
T Consensus 175 y-------kknevfldvvErvNlLmS~~GnVLrs~VsG~V~mk~~LSGmPeckfGlNDkl~~e~kq~esks~~~n~~~~s 247 (446)
T KOG0938|consen 175 Y-------KKNEVFLDVVERVNLLMSSDGNVLRSDVSGTVDMKTHLSGMPECKFGLNDKLGMESKQSESKSDFGNKNFPS 247 (446)
T ss_pred e-------ccceeEeEehheeeeEEcCCCCEEEeecccEEEEEEeccCCcccccccCcccceeeccccccccccccCCCc
Confidence 2 6688999999999999999999999999999999999999999999998640 0
Q ss_pred ---CC----CccccCcccCcccccCCCeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEE
Q psy12905 519 ---RG----IQMQTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIE 591 (611)
Q Consensus 519 ---~~----~qfKtHPnVDK~~F~s~~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IE 591 (611)
++ .+|+||+||....|+++++|++-|||++|-+ ||||.+. ..-|||+|.+-+.+.+....+++|.
T Consensus 248 ks~~g~v~leDc~FHqCV~L~kFn~eh~IsFvPPDGe~EL------MkYr~~e--nInlPFrV~PiV~el~r~kie~ri~ 319 (446)
T KOG0938|consen 248 KSGKGSVLLEDCTFHQCVRLDKFNSEHIISFVPPDGEFEL------MKYRVTE--NINLPFRVTPIVTELGRTKIEYRIT 319 (446)
T ss_pred ccCCceEEeeccchheeeccccccccceEEEeCCCCceEe------Eeeeecc--CcccceEeeeheecccceeEEEEEE
Confidence 11 7999999999999999999999999999999 9999875 7789999999999988766666666
Q ss_pred EEee-ccccccceeEEEccCC
Q psy12905 592 YELE-HEEKELNQVTISIPLP 611 (611)
Q Consensus 592 YEl~-~~~~~L~dV~I~IPlP 611 (611)
+... ...+...+|++.||+|
T Consensus 320 iks~f~~kl~a~~v~~rIPvP 340 (446)
T KOG0938|consen 320 IKSLFPPKLLAKDVVVRIPVP 340 (446)
T ss_pred EeccCCchhhhcceEEEecCC
Confidence 6654 4567899999999998
No 3
>KOG0937|consensus
Probab=100.00 E-value=5.2e-41 Score=356.14 Aligned_cols=297 Identities=18% Similarity=0.285 Sum_probs=239.9
Q ss_pred hhhhhccCCCceeeeeccc-ccchHHHHHHHhhhhhccc---CCCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHH
Q psy12905 62 YLSRTCRSIGIAIVSRQFV-EMTRARIEGLLAAFPKLMS---SGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILED 137 (611)
Q Consensus 62 laa~Il~~~Gk~LIsRqyr-disr~riE~lL~~FpkL~~---~g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~d 137 (611)
.|++|+|.+|++|++|+|| |++++.+|. +|++|+. .+...|++.++|++|+|.+|++||++++|+.|.|+...
T Consensus 2 sa~fild~~G~~lisr~yr~dv~~s~~~~---F~~~l~~~e~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~v 78 (424)
T KOG0937|consen 2 SAVFILDHKGEVLISRDYRGDVPMSSTEK---FFRKLFEKEEGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAALV 78 (424)
T ss_pred ceEEEEcCCCcEeEeecccccCChhhhhh---HHHHHhhhcccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHHH
Confidence 5789999999999999999 999998884 4455543 35667999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHHHHHHHHHHHHHHHH
Q psy12905 138 LETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKREAENKMREK 217 (611)
Q Consensus 138 l~~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~~i~~~EAke~~krk 217 (611)
+++|+++++|+.+||+.+.|++|+|||+.+||+|||+|||||||+++.+.++.||.|+++.-+ .
T Consensus 79 ~~~l~~~~~v~~~y~~~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~~~~l~--~-------------- 142 (424)
T KOG0937|consen 79 LSFLYAVADVFGDYLSELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQKANRLQ--D-------------- 142 (424)
T ss_pred HHHHHHHHHHHHHHhccCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhccccccee--e--------------
Confidence 999999999999999999999999999999999999999999999999999999998743211 0
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhccccccCCCc
Q psy12905 218 AKELKRQRMESAKKFPKMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSLENES 297 (611)
Q Consensus 218 Akel~~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 297 (611)
... + +..+
T Consensus 143 -----------~~~-~----------------------~p~a-------------------------------------- 150 (424)
T KOG0937|consen 143 -----------AQP-R----------------------PPLA-------------------------------------- 150 (424)
T ss_pred -----------cCC-C----------------------CCcc--------------------------------------
Confidence 000 0 0000
Q ss_pred chhhhhhhcccccCCcccchhhhccCCCCcchhhHHhhhhcCcccccCCcccccccccCCCCcccccCCCchhhhhhhhh
Q psy12905 298 YPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVSTLSSKIPTTNISNMDSYSIFLFTLV 377 (611)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~kgmkLG~k~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (611)
+ +.+++|++ .|
T Consensus 151 -v-----tnavsWrs----~g----------------------------------------------------------- 161 (424)
T KOG0937|consen 151 -V-----TNAVSWRS----EG----------------------------------------------------------- 161 (424)
T ss_pred -c-----ccceeecc----cc-----------------------------------------------------------
Confidence 0 00000110 00
Q ss_pred ccCCCCCccccccccCCCcccccccccccccchhhHHHHHHHhhhhhhhhhhhhhhhccCCCcceeeeccceeeeecccc
Q psy12905 378 MQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLLSIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEK 457 (611)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (611)
T Consensus 162 -------------------------------------------------------------------------------- 161 (424)
T KOG0937|consen 162 -------------------------------------------------------------------------------- 161 (424)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCcccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCCC----------C---CCccc
Q psy12905 458 YGYFGDLGHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDT----------R---GIQMQ 524 (611)
Q Consensus 458 ~~~~~~~~~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~~----------~---~~qfK 524 (611)
..-.+++|+++|.|++|+..+++|.|...+|.|++.+|++++|+|.+++.||+... + -.+++
T Consensus 162 -----i~~~KnevflDViE~Vs~l~~~~G~vl~s~i~G~I~~k~~LsGmPelrl~ln~~~~~~~~~~~~~s~~v~ledi~ 236 (424)
T KOG0937|consen 162 -----IYYGKNEVFLDVIESVSLLYDSNGIVLLSEIVGTIKLKCYLSGMPELRLGLNDKVLFDKQGPRSKSKGVELEDIK 236 (424)
T ss_pred -----cccccceEEEEhhhhhhHhhhcCCcEEEeeeeeEEEEEEEcCCCceeeeecCcccccccccccccCcceEeeecc
Confidence 01145779999999999999999999999999999999999999999999986411 1 17899
Q ss_pred cCcccCcccccCCCeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEee-ccccccce
Q psy12905 525 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELE-HEEKELNQ 603 (611)
Q Consensus 525 tHPnVDK~~F~s~~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl~-~~~~~L~d 603 (611)
||+||+...|+++++|.+.+|+++|.+ |+||+++ ...+.+.|.+-..+.+.+.++|.+....+ ....+++|
T Consensus 237 fh~~v~l~~fd~dr~i~FiPPdGeF~L------m~Y~ls~--~vkPli~~~~~~~~~~~~ri~i~~K~~~~fk~~~~a~~ 308 (424)
T KOG0937|consen 237 FHECVRLSRFDNDRTISFIPPDGEFEL------MRYRLST--HVKPLIWFYQLIEEHSRSRIEVMVKLREQFKSRSSANN 308 (424)
T ss_pred cceeechhhccCCceEEecCCCCceEE------EEEEecC--CCCCeEEeeeeeeeccceeEEEEEechhhcCCccccce
Confidence 999999999999999999999999999 9999998 34456666665555444455555544443 24568999
Q ss_pred eEEEccCC
Q psy12905 604 VTISIPLP 611 (611)
Q Consensus 604 V~I~IPlP 611 (611)
|.|.||+|
T Consensus 309 v~I~iP~P 316 (424)
T KOG0937|consen 309 VEICIPVP 316 (424)
T ss_pred EEEEeeCC
Confidence 99999998
No 4
>KOG2635|consensus
Probab=99.97 E-value=4.7e-32 Score=286.58 Aligned_cols=59 Identities=68% Similarity=1.149 Sum_probs=57.7
Q ss_pred CCccCCCChhHHHHhhhhhhhhhHHHHhcccccccchhhhhhhhhccccchhhhHHHHH
Q psy12905 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK 59 (611)
Q Consensus 1 ~~~~~~~~e~~i~~~af~ll~afdEii~~G~re~v~~~Qi~~~~em~sheek~~~~Vrm 59 (611)
|+||+++||++|++|||||||||||||+|||||||||+|||||+||||||||+|++|++
T Consensus 91 pey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eMdSHEEKi~e~v~~ 149 (512)
T KOG2635|consen 91 PEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEMDSHEEKIHELVMR 149 (512)
T ss_pred hhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhccccHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999876
No 5
>KOG2740|consensus
Probab=99.92 E-value=6.1e-24 Score=221.35 Aligned_cols=281 Identities=15% Similarity=0.210 Sum_probs=207.9
Q ss_pred hhhhhhccCCCceeeeeccc--ccchHHHHHHHhhhhhcccCCCcccEEEeCCEEEEEEec-CCEEEEEEecCcchHHHH
Q psy12905 61 CYLSRTCRSIGIAIVSRQFV--EMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPL-EKLYMLLITTKTSNILED 137 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyr--disr~riE~lL~~FpkL~~~g~~ht~ve~e~VrYvY~p~-~~lYlvliT~knSNI~~d 137 (611)
+.|+|++|-+|+.++..+++ -++|+...-+++.|.+-.... ..|++-.--+.|.++-+ +++|+++.++..+=++..
T Consensus 2 i~siflidtsg~l~lek~~~g~t~~rsic~~f~e~~~~~~~~e-~~ppvi~~p~hylfsv~~~~i~~~~~st~e~pPL~~ 80 (418)
T KOG2740|consen 2 ILSIFLIDTSGDLLLEKHLKGSTVVRSICDYFFEDQSSDDDLE-HVPPVISTPHHYLFSVYRDLIFFCAVSTVETPPLMV 80 (418)
T ss_pred eeEEEEEcCCchhhhhHhhCCceeeeehHHHHHHhhhhccccc-cCCceecCCceeeeeeeccCcEEEEEEeccCCChhH
Confidence 57899999999999999998 555655554444443332211 23555555556666666 679999999999999999
Q ss_pred HHHHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHHHHHHHHHHHHHHHH
Q psy12905 138 LETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKREAENKMREK 217 (611)
Q Consensus 138 l~~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~~i~~~EAke~~krk 217 (611)
++|||++++|+.+||++++|..|.||++.||++||||+|+|||-.++.+.||+-|.--|.--+...
T Consensus 81 iefL~rv~dv~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~pps~l~~~~~-------------- 146 (418)
T KOG2740|consen 81 IEFLHRVVDVLLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIPPPSFLSKKFN-------------- 146 (418)
T ss_pred HHHHHHHHHHHHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcCChHHHHHHHh--------------
Confidence 999999999999999999999999999999999999999999999988888763321111110000
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhccccccCCCc
Q psy12905 218 AKELKRQRMESAKKFPKMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSLENES 297 (611)
Q Consensus 218 Akel~~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~~ 297 (611)
+
T Consensus 147 --------------------------------------------------------s----------------------- 147 (418)
T KOG2740|consen 147 --------------------------------------------------------S----------------------- 147 (418)
T ss_pred --------------------------------------------------------h-----------------------
Confidence 0
Q ss_pred chhhhhhhcccccCCcccchhhhccCCCCcchhhHHhhhhcCcccccCCcccccccccCCCCcccccCCCchhhhhhhhh
Q psy12905 298 YPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVSTLSSKIPTTNISNMDSYSIFLFTLV 377 (611)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~kgmkLG~k~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (611)
.+ | ..+++- .-|+.+
T Consensus 148 -------vT---------g-~~n~~~---------------------------------~lPtg~--------------- 162 (418)
T KOG2740|consen 148 -------VT---------G-NSNVSD---------------------------------TLPTGA--------------- 162 (418)
T ss_pred -------hh---------c-cccccc---------------------------------cCCCcc---------------
Confidence 00 0 000000 000000
Q ss_pred ccCCCCCccccccccCCCcccccccccccccchhhHHHHHHHhhhhhhhhhhhhhhhccCCCcceeeeccceeeeecccc
Q psy12905 378 MQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLLSIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEK 457 (611)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (611)
. .++--|-++.|
T Consensus 163 -------------------------------------------------~-------------------s~VPWR~~~~K 174 (418)
T KOG2740|consen 163 -------------------------------------------------L-------------------SNVPWRTAGVK 174 (418)
T ss_pred -------------------------------------------------c-------------------ccccccccCcc
Confidence 0 00001222334
Q ss_pred cCCCCCCCcccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCCCCCCccccCcccCcccccCC
Q psy12905 458 YGYFGDLGHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKELFKSK 537 (611)
Q Consensus 458 ~~~~~~~~~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~~~~~qfKtHPnVDK~~F~s~ 537 (611)
| .+|+..+++.|.+.+.++++|.+...||+|.+.+++...++|.+.+.|+++. .-.+..|||||+-+.|++.
T Consensus 175 y-------~nNE~yvdvlEeidai~~k~gslv~~eI~g~vd~~~qLsgmPdltlsl~np~-~L~dvsfHpcVr~krwe~~ 246 (418)
T KOG2740|consen 175 Y-------TNNEAYVDVLEEIDAIVDKKGSLVFGEIQGIVDVCSQLSGMPDLTLSLNNPR-LLGDVSFHPCVRYKRWESH 246 (418)
T ss_pred c-------ccchhhhhhhheeheEecCCCCEEEEEEEEEEEEEEeecCCCceEEEccCcc-ccCCcccccceeecccccc
Confidence 4 6678999999999999999999999999999999999999999999998753 2367999999999999999
Q ss_pred CeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCC
Q psy12905 538 TEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNG 582 (611)
Q Consensus 538 ~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~ 582 (611)
++|++-|||+.|-+ |.||......-.+|.-+-.-.+-.+
T Consensus 247 ~~lsFIPPDGkFrL------lsy~v~~~~~v~~pvyv~~~i~l~~ 285 (418)
T KOG2740|consen 247 SVLSFIPPDGKFRL------LSYRVDAQNQVAIPVYVKNSISLDS 285 (418)
T ss_pred cceEEcCCCCcEEE------EEEEEehhhccccceEEeeeeccCC
Confidence 99999999999999 9999988656667877766665544
No 6
>PF00928 Adap_comp_sub: Adaptor complexes medium subunit family; InterPro: IPR008968 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents the C-terminal domain of the mu subunit from various clathrin adaptors (AP1, AP2 and AP3) []. The C-teminal domain has an immunoglobulin-like beta-sandwich fold consisting of 9 strands in 2 sheets with a Greek key topology, similar to that found in cytochrome f and certain transcription factors []. The mu subunit regulates the coupling of clathrin lattices with particular membrane proteins by self-phosphorylation via a mechanism that is still unclear []. The mu subunit possesses a highly conserved N-terminal domain of around 230 amino acids, which may be the region of interaction with other AP proteins; a linker region of between 10 and 42 amino acids; and a less well-conserved C-terminal domain of around 190 amino acids, which may be the site of specific interaction with the protein being transported in the vesicle []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1H6E_A 3L81_A 1W63_V 4EMZ_A 4EN2_A 2VGL_M 3ML6_F 2PR9_A 2JKT_M 1I31_A ....
Probab=99.92 E-value=9.5e-25 Score=218.56 Aligned_cols=140 Identities=31% Similarity=0.480 Sum_probs=116.7
Q ss_pred CCcccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCC---CCC---CCccccCcccCcccccCC
Q psy12905 464 LGHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANK---DTR---GIQMQTHPNVDKELFKSK 537 (611)
Q Consensus 464 ~~~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~---~~~---~~qfKtHPnVDK~~F~s~ 537 (611)
...+++|||+|.|+|+|+++|||.+.+++|+|.|.++++++++|.++|.|+++ ..+ -.+++||||||++.|+++
T Consensus 9 ~~~~nei~vdv~E~i~~~~~~~G~~~~~~v~G~v~~~~~l~g~p~i~l~l~~~~~~~~~~~~l~~~~fH~cV~~~~~~~~ 88 (262)
T PF00928_consen 9 KYKKNEIFVDVVEKISAVLDRDGNILSSEVKGSVQCKSFLSGMPEIKLTLNNPLVVSKNGIKLDDVSFHPCVDLSKFESD 88 (262)
T ss_dssp --SSEEEEEEEEEEEEEEEETTSEEEEEEEEEEEEEEEE-SST-EEEEEESSSCCCTSSSBEESEEEEETTEECCCCCSH
T ss_pred ccccceEEEEEEEEEEEEEccCCcEEEEEEEEEEEEEEeCCCCCeEEEEecCccccccCceeeeceeeccccCccccccc
Confidence 45789999999999999999999999999999999999999999999999876 122 378999999999999999
Q ss_pred CeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEeec-cccccceeEEEccCC
Q psy12905 538 TEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEH-EEKELNQVTISIPLP 611 (611)
Q Consensus 538 ~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl~~-~~~~L~dV~I~IPlP 611 (611)
++|.|.||++.|++ |+||++. ...+||+++||+...+.+.++++++++.+. ....++||.|.||+|
T Consensus 89 ~~i~f~PPdg~f~L------l~Yr~~~--~~~~P~~i~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~v~I~iplP 155 (262)
T PF00928_consen 89 RVISFIPPDGEFTL------LRYRVSS--NSPLPFKITCWVSEKSSGRFEVTIELESNFPNKISLENVVIRIPLP 155 (262)
T ss_dssp TEEEE---SEEEEE------EEEEEES--SS--SEEEEEEEEEETTTEEEEEEEEEE-S-TTSEEEEEEEEEE--
T ss_pred cceecCCCCceEEE------EEEEccC--CCCCCcEEEEEeccCCCceEEEEEEecccCCCCceeceEEEEeecC
Confidence 99999999999999 9999987 488999999988875558999999999874 347899999999998
No 7
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=99.89 E-value=9.2e-23 Score=188.66 Aligned_cols=136 Identities=24% Similarity=0.318 Sum_probs=122.5
Q ss_pred hhhhhhccCCCceeeeecccccchHHHHHHHhhhhhcccC--CCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHH
Q psy12905 61 CYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDL 138 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~~~--g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl 138 (611)
|.|+.|+|++|+++++|.|++.+......+.+.+.+.... ...+|++..++.+|+|+++++||+++++..+.|.+..+
T Consensus 2 I~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~ 81 (141)
T PF01217_consen 2 IKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLLL 81 (141)
T ss_dssp EEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHHHH
T ss_pred EEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccchHHHH
Confidence 4688999999999999999988877777777777776543 34589999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccc
Q psy12905 139 ETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDS 196 (611)
Q Consensus 139 ~~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meS 196 (611)
++||.++++++.||+.++|.+|++||..+|++||||||.||++.|+.+.|...+.|..
T Consensus 82 e~l~~~v~~l~~~~~~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~~ 139 (141)
T PF01217_consen 82 EFLHRLVEVLDDYFGNVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQD 139 (141)
T ss_dssp HHHHHHHHHHHHHHSS-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHCC
T ss_pred HHHHHhhhhhhhhhccccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999998863
No 8
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=98.29 E-value=3.4e-06 Score=79.52 Aligned_cols=128 Identities=18% Similarity=0.235 Sum_probs=109.1
Q ss_pred hhhhhccCCCceeeeecccccchHHHHHHHhhhhhcccC--CCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHHH
Q psy12905 62 YLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLE 139 (611)
Q Consensus 62 laa~Il~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~~~--g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl~ 139 (611)
-++.|.+++||+-+.+=|..++...--.+++.--.++.. .++..++|..+-+-||.+..+||++......-|=+-.|+
T Consensus 3 ~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnEl~iL~ 82 (152)
T COG5030 3 KFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRRYATLYFVFGVDNDDNELIILE 82 (152)
T ss_pred EEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHcCCchhcccccccCcEEEeeecCcEEEEEEEcCCCCcchHHH
Confidence 456789999999999999966643333456666666554 356788998888999999999999999998999999999
Q ss_pred HHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhh
Q psy12905 140 TLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVR 189 (611)
Q Consensus 140 ~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk 189 (611)
..|.|+.++..||+.+.|=.+-=||-.+|-.||||+..|--..++...|=
T Consensus 83 lIh~FVE~lDr~FgnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl 132 (152)
T COG5030 83 LIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVL 132 (152)
T ss_pred HHHHHHHHHHHHhccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHH
Confidence 99999999999999999999999999999999999999988877776653
No 9
>KOG0934|consensus
Probab=98.00 E-value=1e-05 Score=76.22 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=91.9
Q ss_pred hccCCCceeeeecccccchHHHHHHHhhhhhc-cc-CCCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHHHHHHH
Q psy12905 66 TCRSIGIAIVSRQFVEMTRARIEGLLAAFPKL-MS-SGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRL 143 (611)
Q Consensus 66 Il~~~Gk~LIsRqyrdisr~riE~lL~~FpkL-~~-~g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl~~L~~ 143 (611)
..++.||.-++..|--++...-..+...-.+. +. ..++..++|..+..-||.+...||+++.-.-+-|=+..|++.|+
T Consensus 7 lvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~Lar~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNEL~~LE~IH~ 86 (145)
T KOG0934|consen 7 LVSRQGKTRLQKWYEALSIKERKKIERELIKSVLARKPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNELAILEFIHN 86 (145)
T ss_pred EEeccCceehhHHHhhhcHHHHHHHHHHHHHHHHhCCcccccchhccCceehhhhhhhEEEEEEEecCCchhhHHHHHHH
Confidence 56889999999999855532211111011111 22 23466899999999999999999999888899999999999999
Q ss_pred HHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCc
Q psy12905 144 FSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGY 179 (611)
Q Consensus 144 l~~V~~~y~~~l~EesIrdNff~IyellDEivd~Gy 179 (611)
++.++..||+++.|=.|.=||=..|+.|||++--|-
T Consensus 87 ~vE~lDkYFg~VCELDiiFNfekay~ILde~~~~g~ 122 (145)
T KOG0934|consen 87 YVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGE 122 (145)
T ss_pred HHHHHHHHhccceeeEEEEehHhHHHHHHHHhcCcc
Confidence 999999999999999999999999999999987774
No 10
>KOG2677|consensus
Probab=97.94 E-value=5.4e-06 Score=93.12 Aligned_cols=137 Identities=16% Similarity=0.210 Sum_probs=111.1
Q ss_pred CcccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCC----------C-------CC---Cccc
Q psy12905 465 GHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKD----------T-------RG---IQMQ 524 (611)
Q Consensus 465 ~~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~----------~-------~~---~qfK 524 (611)
-.+++|.|+|....+..+++||.+...-+.-.|..-.+..|++.++|.||+-. + +. -.|.
T Consensus 584 Y~e~EI~v~~~Defsg~V~Keg~~~~~~v~tri~cL~FlsG~~ec~lgLND~~~kg~Eiv~rkDimp~~t~kwI~~~~~~ 663 (922)
T KOG2677|consen 584 YLEEEITVDVRDEFSGIVSKEGQILQHHVLTRIHCLSFLSGLAECRLGLNDILVKGNEIVLRKDIMPTTTTKWIKLHECR 663 (922)
T ss_pred cccceeEEEEEeccceeecccchhhhhhhhhhhhhhhhccCCceeEeecchhhhcccceeEeccccccccccceeeeeee
Confidence 36788999999999999999999999988889999999999999999998531 0 11 5799
Q ss_pred cCcccCcccccCCCeEEeeCCC-CCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEeec-------
Q psy12905 525 THPNVDKELFKSKTEIGLKNPS-KPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEH------- 596 (611)
Q Consensus 525 tHPnVDK~~F~s~~iL~LKdp~-K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl~~------- 596 (611)
||-|||+..|.+++||.+.++| .-|-+ ||+|..-... -+||++-.-.+.+| ..|.|..++..
T Consensus 664 FH~cVn~~eF~~srVI~F~PlDaCrFEl------MRFrt~~~~~-~lpftlks~~~V~G---a~VEvq~~~~mat~~qr~ 733 (922)
T KOG2677|consen 664 FHGCVNEDEFHNSRVILFNPLDACRFEL------MRFRTVFAEK-TLPFTLKSATSVNG---AEVEVQSWLRMATGFQRN 733 (922)
T ss_pred eecccchhhccccceEEecCcccceeee------eeeeeecCCC-cCceeeeeeeeecc---ceeehHHHHHHHhhhhhc
Confidence 9999999999999999999987 44555 9999877533 68999999888876 33444333321
Q ss_pred ----cccccceeEEEccCC
Q psy12905 597 ----EEKELNQVTISIPLP 611 (611)
Q Consensus 597 ----~~~~L~dV~I~IPlP 611 (611)
....+.||.|.+|+|
T Consensus 734 rd~~~~vpCenI~IrfPVP 752 (922)
T KOG2677|consen 734 RDPLTQVPCENIMIRFPVP 752 (922)
T ss_pred cCccccCcccceeEeccCc
Confidence 245789999999998
No 11
>KOG0935|consensus
Probab=97.79 E-value=0.00011 Score=68.14 Aligned_cols=122 Identities=20% Similarity=0.271 Sum_probs=92.3
Q ss_pred hhccCCCceeeeecccccchHHHHHHHhhhhhcccCCC-cc-cEEEe-CCEEEEEEecCCEEEEEEecCcchHHHHHHHH
Q psy12905 65 RTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGK-QH-TFVET-DSVRYVYQPLEKLYMLLITTKTSNILEDLETL 141 (611)
Q Consensus 65 ~Il~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~~~g~-~h-t~ve~-e~VrYvY~p~~~lYlvliT~knSNI~~dl~~L 141 (611)
-+.++.||.-++|-|...+.+.--.+.+.-..|+.... -| .+|+. ..-.-.|.+..+||++.-....-|=+..|+.+
T Consensus 6 LiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDnelayLe~I 85 (143)
T KOG0935|consen 6 LIQNRAGKTRLAKWYVQFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNELAYLEHI 85 (143)
T ss_pred EEEccccceeheeeeeccCchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCchHHHHHHH
Confidence 36789999999999984433222234455566665422 23 34443 33333346889999999999999999999999
Q ss_pred HHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchh
Q psy12905 142 RLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLA 186 (611)
Q Consensus 142 ~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~ 186 (611)
|+|+.|+.+||+.+.|=.+.=||..+|-.+|||+--|=-+.++-.
T Consensus 86 HlFVEvLd~fF~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~ 130 (143)
T KOG0935|consen 86 HLFVEVLDEFFHNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKT 130 (143)
T ss_pred HHHHHHHHHHhccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHH
Confidence 999999999999999999999999999999999988855444433
No 12
>KOG3343|consensus
Probab=97.07 E-value=0.0076 Score=58.56 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=116.5
Q ss_pred hhhhhhccCCCceeeeecccccchHHHHHHHhhhhhcc-c-C-CCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHH
Q psy12905 61 CYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLM-S-S-GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILED 137 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~-~-~-g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~d 137 (611)
|-|+.|+|..||-+...=|-|--.+.+-+-. +|-|-+ + + ..+.-+.-.||..-||.-.-|||+.++-..+-|=+.-
T Consensus 9 vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqk-aFEK~lF~KT~kt~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENEl~L 87 (175)
T KOG3343|consen 9 VKAILILDSDGKRILAKYYDDPHPSTVKEQK-AFEKNLFSKTSKTESEILLLDGNTVVYKSVIDLHFYVVGSEEENELML 87 (175)
T ss_pred hheEEEEcCCCCEeeeeecCCCcchhHHHHH-HHHHHHhcccccccceeEEecCcEEEEEecccEEEEEecCcchhHHHH
Confidence 4567899999999999988843333222222 666653 2 1 2234566679999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcc-CcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHH
Q psy12905 138 LETLRLFSRVIPEYCR-TLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQ 203 (611)
Q Consensus 138 l~~L~~l~~V~~~y~~-~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~ 203 (611)
.+.|+.|-+-+.-.++ .++-..+.+|.=.|.-++||+||-|---.++.++|-.-..+.+.++-+-+
T Consensus 88 ~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv~~~~~~~~~~e 154 (175)
T KOG3343|consen 88 MSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRVALRPTDEPLSE 154 (175)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHhccCCCCcchHH
Confidence 9999999999999986 57888999999999999999999999999999999999999999885444
No 13
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans.This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.
Probab=97.03 E-value=0.0084 Score=62.03 Aligned_cols=130 Identities=21% Similarity=0.331 Sum_probs=79.2
Q ss_pred ceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCC------eEEEEecCCCCCCCccccCcccCcccccCCCeEEe
Q psy12905 469 QIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYG------RIKVLLANKDTRGIQMQTHPNVDKELFKSKTEIGL 542 (611)
Q Consensus 469 qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~------~ikI~L~~~~~~~~qfKtHPnVDK~~F~s~~iL~L 542 (611)
++..-|.|.|||.+ ++|.+.++.|.|+|.|.-...... .+.+.|++... =.+ +.|| ..|-.. -..
T Consensus 2 gl~asi~E~VnA~F-k~g~~~~v~v~GEv~ls~~~~~~~~~~~~~~l~~rl~n~~~-le~--i~pN---~~~v~~--~~~ 72 (257)
T PF10291_consen 2 GLNASITETVNAYF-KGGQLSKVKVTGEVALSYPAGISSSLTSPPPLSFRLNNFSR-LEK--IAPN---PQFVSS--SSQ 72 (257)
T ss_dssp EEEEEEEEEEEEEE-ETTEEEEEEEEEEEEEEEE--SSS-----SEEEEEEETGGG-EEE--EEE----TTTE----EEE
T ss_pred ceeEEEEEEEEEEE-ECCcEEEEEEEEEEEEecCCChhhcccCCCcEEEEEcCcch-hce--eecC---HhHeec--CCC
Confidence 47788999999998 599999999999999998766554 45666654321 011 1222 001000 111
Q ss_pred eCCCCCCCCC-----C--ceeeEEeeccCCCC--CcCCeEEE-EecCCCCCCceEEEEEEEeecc----ccccceeEEEc
Q psy12905 543 KNPSKPFPLN-----N--DIGVLKWRFTSTDE--SCLPLSIN-CWPSDNGSGGCDVNIEYELEHE----EKELNQVTISI 608 (611)
Q Consensus 543 Kdp~K~FPvn-----~--~vgVLKWR~~~~De--s~lPLsIn-cWpse~~dg~~~V~IEYEl~~~----~~~L~dV~I~I 608 (611)
.+ ..|-+| . ..+.|||++...+. ..+||.+. .|--+. ..++|-|.|.++.. ...|+||+|.+
T Consensus 73 ~~--~~f~~n~~~l~~~~~~~alKYqv~~~~~~~~~~Pl~l~~~Wk~e~--~~tsl~l~Y~~Np~~~~~~~~L~nv~~~v 148 (257)
T PF10291_consen 73 SD--GEFWLNMSALTSHLPKQALKYQVHSDPSNLSSVPLILKPVWKCEP--SQTSLILDYKLNPDAFASPVPLENVVFSV 148 (257)
T ss_dssp ET--TEEEE-TTTTBT-E-EEEEEEEEES--------SEEEEEEEEE-S--SEEEEEEEEEE-TTT--E-EEEEEEEEEE
T ss_pred CC--CcEEEehHHhhhhhhhceEEEEEeccccccCCCCeEEEeEEEeCC--ceEEEEEEEEeChhhccccceeeeEEEEE
Confidence 12 223333 1 24789999988543 67899998 677764 37999999999862 36899999999
Q ss_pred cCC
Q psy12905 609 PLP 611 (611)
Q Consensus 609 PlP 611 (611)
|+.
T Consensus 149 ~l~ 151 (257)
T PF10291_consen 149 PLD 151 (257)
T ss_dssp EB-
T ss_pred EcC
Confidence 873
No 14
>KOG0936|consensus
Probab=96.87 E-value=0.005 Score=59.39 Aligned_cols=130 Identities=15% Similarity=0.232 Sum_probs=101.6
Q ss_pred hhhhhhccCCCceeeeecccccchHHHHHHHh-hhhhccc-CCCcccEEEe------CCEEEEEEecCCEEEEEEecCcc
Q psy12905 61 CYLSRTCRSIGIAIVSRQFVEMTRARIEGLLA-AFPKLMS-SGKQHTFVET------DSVRYVYQPLEKLYMLLITTKTS 132 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyrdisr~riE~lL~-~FpkL~~-~g~~ht~ve~------e~VrYvY~p~~~lYlvliT~knS 132 (611)
+-|+.|.+.+|||-+.+=|..++...--.++. .|.-+.. ...+..|.|. ++.|-+|...--||++.+.-..-
T Consensus 2 I~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvvD~sE 81 (182)
T KOG0936|consen 2 IKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSKRPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVVDSSE 81 (182)
T ss_pred eeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHcCCchHhhhhccccccCCccceeehheeeeEEEEEEEcCCc
Confidence 45778999999999999998444332223332 3322221 1223344332 47899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhH
Q psy12905 133 NILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRT 190 (611)
Q Consensus 133 NI~~dl~~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~ 190 (611)
|=+-.|+.++.|++.+.-.|..+.|=++.=|+-.+--.|+||+.-|..=.|+++.|-.
T Consensus 82 sEL~iLDLIQvfVEtLDkCF~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~ 139 (182)
T KOG0936|consen 82 SELGILDLIQVFVETLDKCFENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVA 139 (182)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHH
Confidence 9999999999999999999999999999999999999999999999888777776543
No 15
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=93.17 E-value=0.038 Score=51.45 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=40.1
Q ss_pred CccCCCChhHHHHhhhhhhhhhHHHHhcccccccchhhhhhhhhcc
Q psy12905 2 EYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMD 47 (611)
Q Consensus 2 ~~~~~~~e~~i~~~af~ll~afdEii~~G~re~v~~~Qi~~~~em~ 47 (611)
.||+.++|.+|.+|...+..+.||||..|+..+.+.+.|...+.|.
T Consensus 93 ~~~~~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~ 138 (141)
T PF01217_consen 93 DYFGNVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQ 138 (141)
T ss_dssp HHHSS-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHC
T ss_pred hhhccccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHh
Confidence 4788999999999999999999999999999999999999988874
No 16
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=92.25 E-value=0.78 Score=50.71 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=53.8
Q ss_pred hhhccCCCceeeeecccccchHHHHHHHhhhhhccc----CCCcccEEEeCCEEEEEEecCCEEEEEEecCcchH---HH
Q psy12905 64 SRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMS----SGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNI---LE 136 (611)
Q Consensus 64 a~Il~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~~----~g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI---~~ 136 (611)
++|++..|||+-||.=.| ..+-++++.+..+++ .+..--.|..++.++||...+-||+|++++..-.. ..
T Consensus 14 ~fIlS~AGKPIysr~G~e---~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~ 90 (415)
T PF03164_consen 14 FFILSSAGKPIYSRYGDE---DKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRK 90 (415)
T ss_pred EEEECCCCceeEEecCCh---HHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHH
Confidence 579999999999987223 333445545444433 24344677899999999999999999999997773 33
Q ss_pred HHHHHH
Q psy12905 137 DLETLR 142 (611)
Q Consensus 137 dl~~L~ 142 (611)
-|++||
T Consensus 91 qL~~ly 96 (415)
T PF03164_consen 91 QLDYLY 96 (415)
T ss_pred HHHHHH
Confidence 444444
No 17
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=87.71 E-value=2.3 Score=39.64 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=65.6
Q ss_pred hhhhhhccCCCceeeeecccccchHHH-HHHHhhhhhccc------CCCcccE-EEeCCEEEEEEecCCEEEEEEecCcc
Q psy12905 61 CYLSRTCRSIGIAIVSRQFVEMTRARI-EGLLAAFPKLMS------SGKQHTF-VETDSVRYVYQPLEKLYMLLITTKTS 132 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyrdisr~ri-E~lL~~FpkL~~------~g~~ht~-ve~e~VrYvY~p~~~lYlvliT~knS 132 (611)
+.++.|.|+.|=||+.=-.-+.+..+. .++++.|..-.+ -|+..++ ...++...+......+|+-.+++.++
T Consensus 17 l~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias~~a 96 (119)
T PF08923_consen 17 LQAIVITDRDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIASSNA 96 (119)
T ss_dssp EEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCcchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEecCCC
Confidence 478999999998887743335555444 367777755432 2454444 44688888888999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhh
Q psy12905 133 NILEDLETLRLFSRVIPEY 151 (611)
Q Consensus 133 NI~~dl~~L~~l~~V~~~y 151 (611)
|+=..+..-..|..++++.
T Consensus 97 N~G~il~l~~~L~~~l~~l 115 (119)
T PF08923_consen 97 NTGLILSLEEELAPILNEL 115 (119)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhHHHHHHHHHHH
Confidence 9999999999998888764
No 18
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=69.82 E-value=24 Score=33.57 Aligned_cols=90 Identities=20% Similarity=0.274 Sum_probs=55.6
Q ss_pred hhhhhhccCCCceeeeeccc-cc----chHHH--HHHH-------hhhhhcccC-----C----CcccEEEeCCEE-EEE
Q psy12905 61 CYLSRTCRSIGIAIVSRQFV-EM----TRARI--EGLL-------AAFPKLMSS-----G----KQHTFVETDSVR-YVY 116 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyr-di----sr~ri--E~lL-------~~FpkL~~~-----g----~~ht~ve~e~Vr-YvY 116 (611)
|.+++|.++.|..+-.|+|. .. ++... ..+| .+|-..+.. + .....++++..+ ++|
T Consensus 1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~ 80 (142)
T PF04099_consen 1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF 80 (142)
T ss_dssp EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence 46789999999999999998 32 11111 1222 223222222 1 234668888764 688
Q ss_pred EecCCEEEEEEecCcc-hHHHHHHHHHHHHHHhhhhc
Q psy12905 117 QPLEKLYMLLITTKTS-NILEDLETLRLFSRVIPEYC 152 (611)
Q Consensus 117 ~p~~~lYlvliT~knS-NI~~dl~~L~~l~~V~~~y~ 152 (611)
+..-++=+|++|..+. +.... +++++.+++.+|+
T Consensus 81 eT~TGlKFvl~td~~~~~~~~~--l~~~~~~lY~dyV 115 (142)
T PF04099_consen 81 ETPTGLKFVLITDPNVPSLRDE--LLRIYYELYVDYV 115 (142)
T ss_dssp E-TTS-EEEEEE-TTCCHCHHH--HHHHHHHHHHHHH
T ss_pred EcCcCcEEEEEecCCCccHHHH--HHHHHHHHHHHHH
Confidence 9999999999999998 54444 4899999999997
No 19
>KOG0997|consensus
Probab=65.59 E-value=26 Score=40.02 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=84.9
Q ss_pred hhhccCCCceeeeecccc-c---chHHHHHHHhhhhhcccCCCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHH-H
Q psy12905 64 SRTCRSIGIAIVSRQFVE-M---TRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILED-L 138 (611)
Q Consensus 64 a~Il~~~Gk~LIsRqyrd-i---sr~riE~lL~~FpkL~~~g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~d-l 138 (611)
++|++..|||+.||-=.| . +...+..+++.|.. ++...+.|.++|.+.|+...+-||+|++++.+-.+.+- .
T Consensus 120 ifilseaGKPiyS~~gs~e~l~stmGv~~alISf~q~---~~~~i~si~a~g~k~vfl~kspl~LvA~s~t~~Sa~qL~~ 196 (523)
T KOG0997|consen 120 IFILSEAGKPIYSRHGSDEALSSTMGVMQALISFFQV---SGLAITSIHAFGNKLVFLQKSPLLLVAVSRTSQSAAQLLQ 196 (523)
T ss_pred EEEEecCCCceeeecCcHHHHHHHHHHHHHHHHHHhh---CCceEEEEEecCceEEEEecCcEEEEEEcccccCHHHHHH
Confidence 568999999999997552 2 12223333322211 23345889999999999999999999999976555543 3
Q ss_pred HHHHHHHHHhhhhccCcchhhHh------hhhHHHH-------HHHHHHHH--cCcccccchhhhhHHhhccchhHHHHH
Q psy12905 139 ETLRLFSRVIPEYCRTLDENEVT------DNAFSLI-------FAFDEIVA--LGYRESVNLAQVRTFVEMDSHEEKVYQ 203 (611)
Q Consensus 139 ~~L~~l~~V~~~y~~~l~EesIr------dNff~Iy-------ellDEivd--~GypE~~~~~qvk~yi~meSheEki~~ 203 (611)
+.+-+.++++. .|++..+. +|| |+- .++|+++| .-+|=+..++-|+..=-.-|..+++..
T Consensus 197 qL~~ly~QIlS----~LT~~ql~~if~~r~Nf-DLRrLL~gser~~~~ll~~~~~~~~~lllnsi~~lPl~~s~Rd~Ls~ 271 (523)
T KOG0997|consen 197 QLLLLYCQILS----ILTASQLQRIFNKRQNF-DLRRLLSGSERLLDNLLDSMNRDPLVLLLNSIRCLPLNSSFRDQLSA 271 (523)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHhcccCc-hHHHHhcccHHHHHHHHHHHhhCcchhhhccceeccCChhHHHHHHH
Confidence 44444455543 23333322 222 221 23444444 256777777788887777788888877
Q ss_pred HHHH
Q psy12905 204 AVRK 207 (611)
Q Consensus 204 ~i~~ 207 (611)
.+.+
T Consensus 272 ~l~~ 275 (523)
T KOG0997|consen 272 LLLS 275 (523)
T ss_pred HHHH
Confidence 6655
No 20
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.33 E-value=10 Score=37.43 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=87.7
Q ss_pred hhhhhhccCCCceeeeecccccchHHHHHHH-------hhhhhccc--C-CCcccEEEeCCEEEEEEecCCEEEEEEecC
Q psy12905 61 CYLSRTCRSIGIAIVSRQFVEMTRARIEGLL-------AAFPKLMS--S-GKQHTFVETDSVRYVYQPLEKLYMLLITTK 130 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyrdisr~riE~lL-------~~FpkL~~--~-g~~ht~ve~e~VrYvY~p~~~lYlvliT~k 130 (611)
|-|+-|+|..|+.|...-|..=-|++=++++ ..|-+.+- . +.+.-+...++---+|..++++.+.++..-
T Consensus 8 v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~~~~Il~f~d~lV~~k~~~dv~~yiv~~m 87 (187)
T COG5541 8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDRESILMFYDRLVMCKRLDDVLLYIVSPM 87 (187)
T ss_pred eeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcCccceeeEcceeeeeeeehhEEEEEeccc
Confidence 4566788888887665555433333322222 12333221 1 334455556777778999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhccC-cchhhHhhhhHHHHHHHHHHHHcCcccccchh
Q psy12905 131 TSNILEDLETLRLFSRVIPEYCRT-LDENEVTDNAFSLIFAFDEIVALGYRESVNLA 186 (611)
Q Consensus 131 nSNI~~dl~~L~~l~~V~~~y~~~-l~EesIrdNff~IyellDEivd~GypE~~~~~ 186 (611)
..|=...-+.+..+-.-+.-.++. -++..|.+|+=.|.-+.||.+|.|.-=.+..+
T Consensus 88 eeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~ 144 (187)
T COG5541 88 EENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSD 144 (187)
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChH
Confidence 999888888888887777777775 57778999999999999999999975444433
No 21
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=53.48 E-value=50 Score=31.24 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=59.2
Q ss_pred HHhhhhhhccCCCceeeeeccc-c---cchHH-------HHHHHhhhhhccc-CC-CcccEEEeCC-EEEEEEecCCEEE
Q psy12905 59 KVCYLSRTCRSIGIAIVSRQFV-E---MTRAR-------IEGLLAAFPKLMS-SG-KQHTFVETDS-VRYVYQPLEKLYM 124 (611)
Q Consensus 59 mvvlaa~Il~~~Gk~LIsRqyr-d---isr~r-------iE~lL~~FpkL~~-~g-~~ht~ve~e~-VrYvY~p~~~lYl 124 (611)
|++-++.|+++.|-.+..|.|- + ++.+. +-+.-+--.++.. .| +..-+++.++ +-++||.+-++=+
T Consensus 1 mave~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kF 80 (134)
T COG5122 1 MAVEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKF 80 (134)
T ss_pred CceeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEE
Confidence 4456778999999999999995 2 22211 0010000011111 02 2234566655 5789999999999
Q ss_pred EEEe-cCcchHHHHHHHHHHHHHHhhhhc
Q psy12905 125 LLIT-TKTSNILEDLETLRLFSRVIPEYC 152 (611)
Q Consensus 125 vliT-~knSNI~~dl~~L~~l~~V~~~y~ 152 (611)
|+++ ++.+|.+.. |+++-.+..||+
T Consensus 81 V~~~~k~t~na~~q---l~kiY~lYsdYV 106 (134)
T COG5122 81 VFVAEKRTVNALFQ---LQKIYSLYSDYV 106 (134)
T ss_pred EEEecCCchhHHHH---HHHHHHHHHHHh
Confidence 9999 789999877 777888888886
No 22
>KOG3088|consensus
Probab=41.99 E-value=35 Score=36.74 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q psy12905 208 REAENKMREKAKELKRQRMESAK 230 (611)
Q Consensus 208 ~EAke~~krkAkel~~~r~e~~~ 230 (611)
.+..||.+|||.||+|++++.++
T Consensus 70 ~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 70 LKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Confidence 45567899999999998888776
No 23
>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1
Probab=36.14 E-value=1e+02 Score=31.36 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=57.1
Q ss_pred CEEEEEEecCCEEEEEEecCcchHHHHHHHHHHHHHHhhhhccCcch-hhHhhhhHHHHHHHHHHHHcCcccccc
Q psy12905 111 SVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDE-NEVTDNAFSLIFAFDEIVALGYRESVN 184 (611)
Q Consensus 111 ~VrYvY~p~~~lYlvliT~knSNI~~dl~~L~~l~~V~~~y~~~l~E-esIrdNff~IyellDEivd~GypE~~~ 184 (611)
...-+|..+.++-+++++-..-|++..=.||+.+++.+.+.++.+.- .++.-..=.|.-+||..+=.|-==-+|
T Consensus 103 ~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN 177 (189)
T PF15001_consen 103 PKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLN 177 (189)
T ss_pred CcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEc
Confidence 34779999999999999999999999999999999999999976544 455555556666666666556333333
No 24
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.48 E-value=7.2e+02 Score=30.73 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=59.4
Q ss_pred cCCCceeeeecccccchHHHHHHHhhhhhcccCCCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHHH--------
Q psy12905 68 RSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLE-------- 139 (611)
Q Consensus 68 ~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~~~g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl~-------- 139 (611)
+.+.|++|--..-.|+......| .|.+++ |-++++|+++|+....|+..|-
T Consensus 117 ~gr~KVIIIDEah~LT~~A~NAL----LKtLEE-----------------PP~~v~FILaTtd~~KIp~TIrSRCq~f~F 175 (830)
T PRK07003 117 DARFKVYMIDEVHMLTNHAFNAM----LKTLEE-----------------PPPHVKFILATTDPQKIPVTVLSRCLQFNL 175 (830)
T ss_pred cCCceEEEEeChhhCCHHHHHHH----HHHHHh-----------------cCCCeEEEEEECChhhccchhhhheEEEec
Confidence 44567777666557776555433 344553 2345666777765555532211
Q ss_pred ---HHHHHHHHhhhhcc----CcchhhHh-------hhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHHHH
Q psy12905 140 ---TLRLFSRVIPEYCR----TLDENEVT-------DNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAV 205 (611)
Q Consensus 140 ---~L~~l~~V~~~y~~----~l~EesIr-------dNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~~i 205 (611)
.-..+.+.+..+|+ .++++.+. -+.=+.+.++|..+.+|. ..++.+.|+..+-.-..+ .+.+++
T Consensus 176 k~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~-~~It~~~V~~~LG~~d~~-~i~~ll 253 (830)
T PRK07003 176 KQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSA-NEVTETAVSGMLGALDQT-YMVRLL 253 (830)
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCcCHHHHHHHhCCCCHH-HHHHHH
Confidence 00112222233332 24444433 134467777888887775 357777777766433333 244443
Q ss_pred H
Q psy12905 206 R 206 (611)
Q Consensus 206 ~ 206 (611)
.
T Consensus 254 ~ 254 (830)
T PRK07003 254 D 254 (830)
T ss_pred H
Confidence 3
No 25
>KOG3190|consensus
Probab=29.14 E-value=2e+02 Score=30.38 Aligned_cols=75 Identities=28% Similarity=0.274 Sum_probs=43.6
Q ss_pred hhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHHHHHH--------HHHHHHHHHHH-
Q psy12905 148 IPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK--------REAENKMREKA- 218 (611)
Q Consensus 148 ~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~~i~~--------~EAke~~krkA- 218 (611)
|.+.-|.|+++-++.|| +-|||+- . .=.+++--+.-.-.++++.+.+++ .|....++|.|
T Consensus 117 FD~lsG~l~~~~~~knY----qFLde~R-----~--~E~eLkk~l~~~k~~~~~~q~~rq~~~~~~s~ker~~~ekr~~~ 185 (256)
T KOG3190|consen 117 FDALSGDLDEECFRKNY----QFLDEIR-----V--KEIELKKELNKAKAEEKIDQLERQMTQHLMSTKERTQAEKRHAE 185 (256)
T ss_pred hhhccCccCHHHHHhhh----hhHhhhh-----h--hHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34556789999999996 4567762 1 111344434444455666666666 44444444444
Q ss_pred --HHHHHHHHhhhccCC
Q psy12905 219 --KELKRQRMESAKKFP 233 (611)
Q Consensus 219 --kel~~~r~e~~~~~~ 233 (611)
+||+..++++++.|.
T Consensus 186 ~~~elk~~e~e~~k~G~ 202 (256)
T KOG3190|consen 186 TRKELKDDERERAKEGK 202 (256)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 456667777776553
No 26
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=29.11 E-value=3.1e+02 Score=23.07 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=42.2
Q ss_pred cccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHHHHHHHHHHHhhhhcc
Q psy12905 103 QHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCR 153 (611)
Q Consensus 103 ~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl~~L~~l~~V~~~y~~ 153 (611)
..-.++.++..|-|.--+++..+++|.+.-..-.-+.||..+-+-+..-++
T Consensus 15 ~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~ 65 (83)
T PF13774_consen 15 SKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYG 65 (83)
T ss_dssp SEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcC
Confidence 456677888888888899999999999999999999999998888766554
No 27
>KOG3369|consensus
Probab=25.00 E-value=2.6e+02 Score=28.43 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=40.0
Q ss_pred cccEEEeCCE-EEEEEecCCEEEEEEecCcchHHHHHHHHHHHHHHhhhhc
Q psy12905 103 QHTFVETDSV-RYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYC 152 (611)
Q Consensus 103 ~ht~ve~e~V-rYvY~p~~~lYlvliT~knSNI~~dl~~L~~l~~V~~~y~ 152 (611)
..-++|++.. -++||.+-++=+|++|..-.+++.- +|+++-.+..||.
T Consensus 122 Gie~LetdtF~l~~~QTlTG~KFVvis~~~~~~aD~--lLrKiYelYsDyv 170 (199)
T KOG3369|consen 122 GIEVLETDTFTLHIFQTLTGTKFVVIAEPGTQGADS--LLRKIYELYSDYV 170 (199)
T ss_pred ceEEEEeccEEEEEEEccCCcEEEEEecCCchhHHH--HHHHHHHHHHHHh
Confidence 4466888774 6899999999999999998877664 5899999999996
No 28
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=24.71 E-value=28 Score=34.80 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=11.4
Q ss_pred ccccCcccCcccc
Q psy12905 522 QMQTHPNVDKELF 534 (611)
Q Consensus 522 qfKtHPnVDK~~F 534 (611)
+.-+|||||+..|
T Consensus 17 Die~HPniD~~S~ 29 (177)
T PF03234_consen 17 DIEVHPNIDKRSL 29 (177)
T ss_pred ccccCCCCChHHH
Confidence 5679999999987
No 29
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.65 E-value=5.5e+02 Score=31.55 Aligned_cols=29 Identities=17% Similarity=0.130 Sum_probs=19.3
Q ss_pred cCCCceeeeecccccchHHHHHHHhhhhhcccC
Q psy12905 68 RSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSS 100 (611)
Q Consensus 68 ~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~~~ 100 (611)
..+.|++|=...-.|+......|| |.+++
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLL----K~LEE 146 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALL----KIVEE 146 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHH----HHHhC
Confidence 456788887777788887666444 55554
No 30
>TIGR02215 phage_chp_gp8 phage conserved hypothetical protein, phiE125 gp8 family. This model describes a family of proteins found exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. Members of this family show some similarity to members of pfam05135, a putative DNA packaging protein family.
Probab=22.87 E-value=72 Score=31.91 Aligned_cols=51 Identities=12% Similarity=0.259 Sum_probs=34.6
Q ss_pred cccccchhhhhhhhhccccchh--hhHHHHHHhhhhhhccCCCceeeeeccc-ccc
Q psy12905 31 YRESVNLAQVRTFVEMDSHEEK--VYQAVRKVCYLSRTCRSIGIAIVSRQFV-EMT 83 (611)
Q Consensus 31 ~re~v~~~Qi~~~~em~sheek--~~~~Vrmvvlaa~Il~~~Gk~LIsRqyr-dis 83 (611)
--|.|+++++|.+|..+.-+|- +...++.+ .+++-...||.|+.|.|+ -++
T Consensus 10 ~~~pvtl~e~K~~LRi~~~~eDa~l~~li~aA--~~~iE~~tgr~l~~q~~~~~l~ 63 (188)
T TIGR02215 10 ADEPLTVADFKAFLRLGTEVQDEVLRSLLTAA--RAAIEARTGKILISQQWRLTVD 63 (188)
T ss_pred cCCccCHHHHHHhcCCCCCccHHHHHHHHHHH--HHHHHHHhCceeeeeEEEEEEc
Confidence 4578999999999998765432 22233332 223445579999999999 554
No 31
>KOG2007|consensus
Probab=22.57 E-value=2e+02 Score=33.52 Aligned_cols=60 Identities=25% Similarity=0.256 Sum_probs=31.6
Q ss_pred chhhHhhhhHHHHHHHHHHH-----HcCcc-cccchhhhhHHhhccchhHHHHHHHHH-HHHHHHHHHHH
Q psy12905 156 DENEVTDNAFSLIFAFDEIV-----ALGYR-ESVNLAQVRTFVEMDSHEEKVYQAVRK-REAENKMREKA 218 (611)
Q Consensus 156 ~EesIrdNff~IyellDEiv-----d~Gyp-E~~~~~qvk~yi~meSheEki~~~i~~-~EAke~~krkA 218 (611)
-|-.+..+..+|+++.|.+- ++|+. |.-. .++.+.-..-||-+++.-++ .+.|+..++|+
T Consensus 481 Re~a~~~~~~~iL~l~d~lR~~~l~~~g~~led~~---g~~lvk~v~~e~~l~~~eek~~ae~~K~~~k~ 547 (586)
T KOG2007|consen 481 REVAREKKVPEILELCDTLRDSDLLELGVRLEDRK---GSTLVKAVDREELLQEREEKTSAEKNKDKEKS 547 (586)
T ss_pred HHHHHhcchHHHHHHhHHHHHhhHHHhhhHHHhCC---chHHHHHhhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344455569999999976 44532 1222 33555555566655554444 33333333333
No 32
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=22.14 E-value=4.2e+02 Score=23.74 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=38.6
Q ss_pred hhhhhhccCCCceeeeec-ccccchHHHHHHHhhhhhcccCCCcccEEEeCCEEEEEEecCC
Q psy12905 61 CYLSRTCRSIGIAIVSRQ-FVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEK 121 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRq-yrdisr~riE~lL~~FpkL~~~g~~ht~ve~e~VrYvY~p~~~ 121 (611)
+..++|++..|.+.-+-. |..++...+-.++..|-.- .....+-|..+|.+|...+.++
T Consensus 16 ~~~aaI~~~dG~vwA~s~~f~~~~~~E~~~i~~~f~~~--~~~~~~gi~l~G~kY~~~~~d~ 75 (121)
T PF00235_consen 16 ITKAAIIGSDGSVWASSPGFSNISPEEAKAIIKAFNNP--SKFPSNGITLGGKKYIVLRADD 75 (121)
T ss_dssp ESEEEEEETTSSEEEEETTGGGCSHHHHHHHHHHHHSS--SHHHHH-EEETTEEEEEEEEET
T ss_pred EeEEEEEcCCCCEEEecCCCCCCCHHHHHHHHHHhcCc--hhcccCCeEEcCcEeEEEecCC
Confidence 567889999997777544 5488888877777777552 0011234667777777777654
No 33
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=22.11 E-value=78 Score=25.04 Aligned_cols=43 Identities=28% Similarity=0.357 Sum_probs=27.7
Q ss_pred hhhHHHHhc-ccccccchhhhhhhhhccccchhhhHHHHHHhhhhhhccCCCceeeeeccc
Q psy12905 21 FAFDEIVAL-GYRESVNLAQVRTFVEMDSHEEKVYQAVRKVCYLSRTCRSIGIAIVSRQFV 80 (611)
Q Consensus 21 ~afdEii~~-G~re~v~~~Qi~~~~em~sheek~~~~Vrmvvlaa~Il~~~Gk~LIsRqyr 80 (611)
...|||+.| ||+- --.|++-.-+|.=+. +.+.+|+|++.|.|.
T Consensus 3 LT~~El~elTG~k~--~~~Q~~~L~~~Gi~~---------------~~~~~G~p~V~r~~v 46 (47)
T PF13986_consen 3 LTDEELQELTGYKR--PSKQIRWLRRNGIPF---------------VVRADGRPIVTRSHV 46 (47)
T ss_pred CCHHHHHHHHCCCC--HHHHHHHHHHCCCee---------------EECCCCCEEeeHHHh
Confidence 346788876 8882 223444444443332 778999999999875
No 34
>PRK02939 lipoprotein; Reviewed
Probab=21.26 E-value=6.8e+02 Score=26.44 Aligned_cols=101 Identities=14% Similarity=0.230 Sum_probs=52.8
Q ss_pred EEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCC-----C--CC----CccccCcccCcccccCCCeEEe
Q psy12905 474 QEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKD-----T--RG----IQMQTHPNVDKELFKSKTEIGL 542 (611)
Q Consensus 474 IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~-----~--~~----~qfKtHPnVDK~~F~s~~iL~L 542 (611)
|.=++++++++||=+.++++.. .+....+.+.+..+. + +. .+|+.-.-.| .-+..
T Consensus 60 v~~~v~~~~~~eGCfdtl~~~~-------~~~n~~l~lvr~~n~lid~~t~~k~~~l~~kCql~~~~d-------g~l~~ 125 (236)
T PRK02939 60 VTKRVSGTLSEEGCFDTLELLD-------LENNTGLALVLDANYYRDAETLEKRVRLQGKCQLAELPS-------AGVSW 125 (236)
T ss_pred EEEEEEEEEcCCCceeeeEecc-------cccccceEEEEecCeeeccccCeeEEEECCceEEEEccC-------CcEEE
Confidence 5567889999999999998875 111122333222110 0 01 1222211111 22334
Q ss_pred eCCCCCCCCCC---ceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEee
Q psy12905 543 KNPSKPFPLNN---DIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELE 595 (611)
Q Consensus 543 Kdp~K~FPvn~---~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl~ 595 (611)
+=.+++|-+.. +..+ +|||- +.-.|+.++ +..++-.+.|+++|...
T Consensus 126 ~~nd~GfI~~~~~~~~~~-~Y~Yd---~~g~P~~~t---~~~~~kv~sv~~~~~~d 174 (236)
T PRK02939 126 ETDDNGFVIKASGKEMQV-EYRYD---DEGYPLGKT---TKSNDKTLSVSATPSAD 174 (236)
T ss_pred EECCCceEEEeecCCCce-EEEec---CCCCceeeE---EecCCeEEEEEEecCCC
Confidence 44467776652 3344 88885 456799988 33332346566666643
No 35
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=20.68 E-value=1.6e+02 Score=24.96 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHH-HHHHHHH-HHHHHHH
Q psy12905 162 DNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEK-VYQAVRK-REAENKM 214 (611)
Q Consensus 162 dNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEk-i~~~i~~-~EAke~~ 214 (611)
.+|.+++..+++++..||+-.-=++++..++-.....+. ..++++. .++..++
T Consensus 18 ~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~~~~~~~k~~i~~~la~~e~rl 72 (89)
T PF08542_consen 18 GDFKEARKKLYELLVEGYSASDILKQLHEVLVESDIPDSQKAEILKILAEIEYRL 72 (89)
T ss_dssp TCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTSTSSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhHHH
Confidence 388899999999999999999999998888877643333 2333333 4443333
No 36
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=20.59 E-value=3.8e+02 Score=26.48 Aligned_cols=50 Identities=8% Similarity=0.188 Sum_probs=29.7
Q ss_pred hhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccc---hhHHHHHHHHH
Q psy12905 148 IPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDS---HEEKVYQAVRK 207 (611)
Q Consensus 148 ~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meS---heEki~~~i~~ 207 (611)
|.+.||.++++..+.||- -|||+- .-.+++|+.=|.-.- ..|+|+..+.+
T Consensus 38 Fd~~~G~~~~~~f~k~Y~----FL~d~r------~~E~~~Lk~~lk~~k~~~~~e~lk~~L~~ 90 (168)
T PF06102_consen 38 FDSLSGEFNEDLFRKNYG----FLDDYR------EKEIKELKKQLKKTKDPEEREELKRELQR 90 (168)
T ss_pred cCccccccCHHHHHHhhh----hHHHHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457799999998888863 345542 223455555555442 33456666655
No 37
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.10 E-value=59 Score=27.24 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=16.6
Q ss_pred HHHHHcCcccccchhhhhH
Q psy12905 172 DEIVALGYRESVNLAQVRT 190 (611)
Q Consensus 172 DEivd~GypE~~~~~qvk~ 190 (611)
+++|.+|||+.+.-+.||+
T Consensus 7 ~dLi~lGf~~~tA~~IIrq 25 (59)
T PF11372_consen 7 KDLIELGFSESTARDIIRQ 25 (59)
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 6899999999998888876
Done!