Query psy12905
Match_columns 611
No_of_seqs 261 out of 479
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 22:45:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 2.5E-53 8.7E-58 454.4 27.3 297 61-611 2-327 (435)
2 1w63_M Adaptor-related protein 100.0 2.2E-53 7.7E-58 453.3 20.9 295 59-611 1-317 (423)
3 1w63_Q Adapter-related protein 100.0 2.9E-29 1E-33 236.2 12.1 140 61-200 2-143 (158)
4 2vgl_S AP-2 complex subunit si 100.0 1.5E-28 5E-33 226.9 11.9 136 61-196 2-140 (142)
5 4en2_M AP-1 complex subunit MU 99.9 4.6E-27 1.6E-31 238.2 12.6 139 465-611 9-160 (266)
6 1i31_A Clathrin coat assembly 99.9 3.6E-26 1.2E-30 236.1 14.9 135 465-611 47-206 (314)
7 3l81_A AP-4 complex subunit MU 99.9 2.2E-26 7.4E-31 237.1 12.8 139 466-611 31-185 (301)
8 3ml6_A Chimeric complex betwee 99.9 1E-25 3.5E-30 239.1 15.9 138 466-611 119-277 (385)
9 3tjz_C Coatomer subunit zeta-1 99.9 2.5E-22 8.6E-27 188.8 12.1 133 61-197 13-151 (153)
10 2vgl_M AP-2 complex subunit MU 97.0 0.00016 5.4E-09 77.5 1.6 53 2-54 91-143 (435)
11 1w63_M Adaptor-related protein 96.9 0.00032 1.1E-08 74.9 2.4 49 2-50 93-141 (423)
12 3g9h_A Suppressor of yeast pro 96.6 0.04 1.4E-06 57.7 15.6 127 468-611 68-212 (328)
13 1w63_Q Adapter-related protein 96.1 0.00094 3.2E-08 62.5 0.2 51 2-52 93-143 (158)
14 2vgl_S AP-2 complex subunit si 95.3 0.0046 1.6E-07 56.6 1.4 47 2-48 93-140 (142)
15 3cpt_A Mitogen-activated prote 87.2 1.8 6.3E-05 40.4 8.1 95 61-155 38-140 (143)
16 2j3w_A Sedlin, trafficking pro 84.4 1.6 5.6E-05 39.9 6.2 73 58-130 2-91 (142)
17 3tjz_C Coatomer subunit zeta-1 63.0 2.4 8.3E-05 39.4 1.3 47 2-48 103-150 (153)
18 3kyq_A YKT6, synaptobrevin hom 61.9 34 0.0012 33.0 9.3 159 61-222 4-193 (199)
19 3c18_A Nucleotidyltransferase- 45.5 36 0.0012 35.1 6.7 51 140-190 123-182 (290)
20 2j3t_C Trafficking protein par 42.6 51 0.0017 30.1 6.7 91 59-151 1-108 (145)
21 4b93_A Vesicle-associated memb 35.5 68 0.0023 30.3 6.6 49 104-152 43-91 (189)
22 2vx8_A Nucleoporin-like protei 34.1 2.9E+02 0.0098 25.8 10.5 50 104-153 85-134 (169)
23 1vet_B P14, late endosomal/lys 32.3 2.7E+02 0.0091 24.7 10.2 89 62-150 20-117 (125)
24 3g13_A Putative conjugative tr 31.1 92 0.0032 28.1 6.5 72 158-233 85-156 (169)
25 2nut_C Vesicle-trafficking pro 30.8 2.2E+02 0.0074 26.7 9.3 49 104-152 52-100 (196)
26 3cue_C Transport protein parti 30.4 77 0.0026 29.5 5.9 73 59-131 1-95 (159)
27 2fh5_A Signal recognition part 29.9 2.2E+02 0.0076 27.4 9.1 88 63-152 13-103 (185)
28 1v9d_A Diaphanous protein homo 29.7 1.8E+02 0.0061 29.8 9.0 30 165-194 269-304 (340)
29 4afi_A AP-3 complex subunit de 28.8 1.2E+02 0.004 28.7 6.9 89 58-153 53-144 (173)
30 3cue_A Transport protein parti 25.7 2.6E+02 0.009 27.6 8.9 24 59-82 1-25 (219)
31 1j3w_A Giding PROTEIN-MGLB; gl 25.0 3.3E+02 0.011 25.2 9.2 94 61-154 29-135 (163)
32 3p8c_D Wiskott-aldrich syndrom 22.0 61 0.0021 33.2 3.7 11 208-218 167-177 (279)
33 3guv_A Site-specific recombina 22.0 96 0.0033 28.0 4.8 71 159-233 86-156 (167)
34 3t12_B Gliding protein MGLB; G 21.1 4.6E+02 0.016 23.7 9.4 92 61-152 26-130 (136)
35 2j1d_G DAAM1, disheveled-assoc 21.1 2E+02 0.0067 31.1 7.7 36 160-195 347-388 (483)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=2.5e-53 Score=454.36 Aligned_cols=297 Identities=17% Similarity=0.251 Sum_probs=239.9
Q ss_pred hhhhhhccCCCceeeeeccc-ccchHHHHHHHhhhhhcccC---CCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHH
Q psy12905 61 CYLSRTCRSIGIAIVSRQFV-EMTRARIEGLLAAFPKLMSS---GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILE 136 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyr-disr~riE~lL~~FpkL~~~---g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~ 136 (611)
+.|++|+|++||++++|+|+ +++++.++ .|++++.. ..++|+++.++++|+|+++++||++++|+.|+|++.
T Consensus 2 I~~i~I~~~~Gk~~l~k~y~~~~~~~~~~----~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 77 (435)
T 2vgl_M 2 IGGLFIYNHKGEVLISRVYRDDIGRNAVD----AFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM 77 (435)
T ss_dssp CCEEEEECTTCCEEEEEECSSSCCHHHHH----HHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred eEEEEEECCCCCEEEEEecCCCCChhHHH----HHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 46889999999999999999 78876654 68777543 267899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHHHHHHHHHHHHHHH
Q psy12905 137 DLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKREAENKMRE 216 (611)
Q Consensus 137 dl~~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~~i~~~EAke~~kr 216 (611)
+|+|||+|++++.+||+.++|++|++||+.+|++||||||+||||.++.++|++|++|++|++|++.
T Consensus 78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~------------- 144 (435)
T 2vgl_M 78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQT------------- 144 (435)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999988531
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhccccccCCC
Q psy12905 217 KAKELKRQRMESAKKFPKMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSLENE 296 (611)
Q Consensus 217 kAkel~~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~ 296 (611)
++ . .. . + +. + .
T Consensus 145 --~~-------~----~~----------------~----~--~~---~----------~--------------------- 155 (435)
T 2vgl_M 145 --KE-------E----QS----------------Q----I--TS---Q----------V--------------------- 155 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --cc-------c----cc----------------c----c--cc---c----------c---------------------
Confidence 00 0 00 0 0 00 0 0
Q ss_pred cchhhhhhhcccccCCcccchhhhccCCCCcchhhHHhhhhcCcccccCCcccccccccCCCCcccccCCCchhhhhhhh
Q psy12905 297 SYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVSTLSSKIPTTNISNMDSYSIFLFTL 376 (611)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~kgmkLG~k~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (611)
..+.+|.+
T Consensus 156 --------~~~i~wr~---------------------------------------------------------------- 163 (435)
T 2vgl_M 156 --------TGQIGWRR---------------------------------------------------------------- 163 (435)
T ss_dssp -----------CCSSC----------------------------------------------------------------
T ss_pred --------cccccccc----------------------------------------------------------------
Confidence 00011110
Q ss_pred hccCCCCCccccccccCCCcccccccccccccchhhHHHHHHHhhhhhhhhhhhhhhhccCCCcceeeeccceeeeeccc
Q psy12905 377 VMQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLLSIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDE 456 (611)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (611)
.|
T Consensus 164 -------------------------------------------------------------~g----------------- 165 (435)
T 2vgl_M 164 -------------------------------------------------------------EG----------------- 165 (435)
T ss_dssp -------------------------------------------------------------SC-----------------
T ss_pred -------------------------------------------------------------cc-----------------
Confidence 00
Q ss_pred ccCCCCCCCcccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCC-----------------CC
Q psy12905 457 KYGYFGDLGHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKD-----------------TR 519 (611)
Q Consensus 457 ~~~~~~~~~~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~-----------------~~ 519 (611)
.+-.+++|||+|.|+|++.++++|.+.+++|+|+|+|+++++|+|.++|.|++.. ..
T Consensus 166 ------i~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~ 239 (435)
T 2vgl_M 166 ------IKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQ 239 (435)
T ss_dssp ------CCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC-----------------
T ss_pred ------CCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccccccccccccC
Confidence 0124678999999999999999999999999999999999999999999998640 12
Q ss_pred C---CccccCcccCcccccCCCeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEee-
Q psy12905 520 G---IQMQTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELE- 595 (611)
Q Consensus 520 ~---~qfKtHPnVDK~~F~s~~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl~- 595 (611)
+ +||+||||||++.|+++++|+|+||||+|++ |+||+++ +..+||+|+||+++.++ + ++||++.
T Consensus 240 ~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~L------m~Yr~~~--~~~~P~~i~~~~~~~~~--~--~ve~~l~~ 307 (435)
T 2vgl_M 240 SIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFEL------MRYRTTK--DIILPFRVIPLVREVGR--T--KLEVKVVI 307 (435)
T ss_dssp CCCCCEEEECTTEEEC-----CCEEECCCSEEEEE------EEEEECS--SCCCSEEEEEEEECCTT--T--EEEEEEEE
T ss_pred ceEccccccceeecHhHhccCceEEEECCCCcEEE------EEEEecC--CcCCCeEEEEEEEecCC--C--EEEEEEEE
Confidence 2 5999999999999999999999999999987 9999987 57799999999998764 3 3555553
Q ss_pred -c---cccccceeEEEccCC
Q psy12905 596 -H---EEKELNQVTISIPLP 611 (611)
Q Consensus 596 -~---~~~~L~dV~I~IPlP 611 (611)
. ....++||.|.||+|
T Consensus 308 ~~~~~~~~~~~~V~I~IP~P 327 (435)
T 2vgl_M 308 KSNFKPSLLAQKIEVRIPTP 327 (435)
T ss_dssp EECSCTTSEEEEEEEEEECC
T ss_pred eCCCCCCceeeEEEEEEECC
Confidence 2 225699999999998
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.2e-53 Score=453.32 Aligned_cols=295 Identities=19% Similarity=0.350 Sum_probs=243.9
Q ss_pred HHhhhhhhccCCCceeeeeccc-ccchHHHHHHHhhhhhccc---C-CCcccEEEeCCEEEEEEecCCEEEEEEecCcch
Q psy12905 59 KVCYLSRTCRSIGIAIVSRQFV-EMTRARIEGLLAAFPKLMS---S-GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSN 133 (611)
Q Consensus 59 mvvlaa~Il~~~Gk~LIsRqyr-disr~riE~lL~~FpkL~~---~-g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSN 133 (611)
|.+.|++|+|++||++++|+|+ ++++..+ +.|++++. . +.++|+++.++++|+|+++++||++++|+.|+|
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~----~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n 76 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEV----EHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNAC 76 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTH----HHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCC
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHH----HHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCC
Confidence 4478999999999999999999 7887654 47877743 2 578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHHHHHHHHHHHH
Q psy12905 134 ILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKREAENK 213 (611)
Q Consensus 134 I~~dl~~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~~i~~~EAke~ 213 (611)
++.+|+|||+|++++.+||+.++|++|++||+.+|++||||||+||||+++.++|++|++|++|+-+
T Consensus 77 ~l~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~------------- 143 (423)
T 1w63_M 77 VSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLE------------- 143 (423)
T ss_dssp THHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999999720
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccchhhhhhhhhhhhhhhhcccccc
Q psy12905 214 MREKAKELKRQRMESAKKFPKMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSL 293 (611)
Q Consensus 214 ~krkAkel~~~r~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 293 (611)
++ +. . + +. + .
T Consensus 144 ---~~----------~~--~----------------------~--~~---~----------~------------------ 153 (423)
T 1w63_M 144 ---TG----------AP--R----------------------P--PA---T----------V------------------ 153 (423)
T ss_dssp ---CC---------------------------------------------------------------------------
T ss_pred ---cc----------cc--C----------------------C--cc---c----------c------------------
Confidence 00 00 0 0 00 0 0
Q ss_pred CCCcchhhhhhhcccccCCcccchhhhccCCCCcchhhHHhhhhcCcccccCCcccccccccCCCCcccccCCCchhhhh
Q psy12905 294 ENESYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVSTLSSKIPTTNISNMDSYSIFL 373 (611)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~kgmkLG~k~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (611)
..+.+|.+ .|
T Consensus 154 -----------~~~i~wr~----~g------------------------------------------------------- 163 (423)
T 1w63_M 154 -----------TNAVSWRS----EG------------------------------------------------------- 163 (423)
T ss_dssp --------------CCSSC----SS-------------------------------------------------------
T ss_pred -----------cCCCCccc----cC-------------------------------------------------------
Confidence 00001100 00
Q ss_pred hhhhccCCCCCccccccccCCCcccccccccccccchhhHHHHHHHhhhhhhhhhhhhhhhccCCCcceeeeccceeeee
Q psy12905 374 FTLVMQVPKPRSFRFENTLKTPFATSVNYHVNFSHLNKLLSIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRI 453 (611)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (611)
T Consensus 164 -------------------------------------------------------------------------------- 163 (423)
T 1w63_M 164 -------------------------------------------------------------------------------- 163 (423)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCcccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCC---------CCC---C
Q psy12905 454 SDEKYGYFGDLGHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKD---------TRG---I 521 (611)
Q Consensus 454 ~~~~~~~~~~~~~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~---------~~~---~ 521 (611)
.+-.+++|||+|.|+|++.+++||++.+++|+|+|+|+++++|+|.++|.|++.. ..+ +
T Consensus 164 ---------~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~~~~~~v~l~ 234 (423)
T 1w63_M 164 ---------IKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELE 234 (423)
T ss_dssp ---------CCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC-------------CEE
T ss_pred ---------CccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccccccCceEcc
Confidence 0125678999999999999999999999999999999999999999999998753 122 5
Q ss_pred ccccCcccCcccccCCCeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEe--ec---
Q psy12905 522 QMQTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYEL--EH--- 596 (611)
Q Consensus 522 qfKtHPnVDK~~F~s~~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl--~~--- 596 (611)
||+||||||++.|+++++|+|+||||+|++ |+||+++. ..+||+++||+++.++ . .+||++ ..
T Consensus 235 d~~fHpcV~~~~f~~~r~isf~PPdg~F~L------m~Yr~~~~--~~~P~~i~~~~~~~~~--~--~ve~~l~~~~~~~ 302 (423)
T 1w63_M 235 DVKFHQCVRLSRFENDRTISFIPPDGEFEL------MSYRLNTH--VKPLIWIESVIEKHSH--S--RIEYMVKAKSQFK 302 (423)
T ss_dssp EEEECTTEEESSSSSCCEEEECCCSEEEEE------EEEEEECC--CCCTTCCEEEEEEETT--T--EEEEEEEEECCSC
T ss_pred cccccccccHHHhCCCCeEEEECCCCcEEE------EEEEecCC--cCCCEEEEEEEEecCC--C--EEEEEEEEcccCC
Confidence 999999999999999999999999999987 99999873 6799999999997553 3 355555 32
Q ss_pred cccccceeEEEccCC
Q psy12905 597 EEKELNQVTISIPLP 611 (611)
Q Consensus 597 ~~~~L~dV~I~IPlP 611 (611)
....++||.|.||+|
T Consensus 303 ~~~~~~~V~I~IP~P 317 (423)
T 1w63_M 303 RRSTANNVEIHIPVP 317 (423)
T ss_dssp TTSEEESCEEEEECC
T ss_pred CcceeeEEEEEEeCC
Confidence 235699999999998
No 3
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.96 E-value=2.9e-29 Score=236.19 Aligned_cols=140 Identities=15% Similarity=0.199 Sum_probs=126.5
Q ss_pred hhhhhhccCCCceeeeecccccchHHHHHHHhhhhhcccC--CCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHH
Q psy12905 61 CYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDL 138 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~~~--g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl 138 (611)
+.|++|+|++||++++|+|++.+...-..+.+.|++++.. +.++|+++.++++|+|+++++||++++|++|+|++.++
T Consensus 2 I~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~l 81 (158)
T 1w63_Q 2 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITL 81 (158)
T ss_dssp EEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHHH
T ss_pred eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence 4688999999999999999966554333456678888653 45789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHH
Q psy12905 139 ETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEK 200 (611)
Q Consensus 139 ~~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEk 200 (611)
++||++++++.+||+.++|++|++||+.+|++||||||+|||+.++.++|++|++|++.-+|
T Consensus 82 e~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~~ 143 (158)
T 1w63_Q 82 ELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQE 143 (158)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999886433
No 4
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.95 E-value=1.5e-28 Score=226.92 Aligned_cols=136 Identities=17% Similarity=0.289 Sum_probs=124.0
Q ss_pred hhhhhhccCCCceeeeecccccchHHHHHHHhhhhhcccC--CCcccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHH
Q psy12905 61 CYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDL 138 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~~~--g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl 138 (611)
+.|++|+|++||++++|+|+.++...-..+.+.|++++.. ++++|+++.++++|+|+++++||++++|++|+|++.++
T Consensus 2 I~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~l 81 (142)
T 2vgl_S 2 IRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYL 81 (142)
T ss_dssp EEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHHH
T ss_pred eEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHH
Confidence 4688999999999999999977765555677889888553 35789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCcchhhHhhhhHHHHHHHHHHHHcCcccccc-hhhhhHHhhccc
Q psy12905 139 ETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVN-LAQVRTFVEMDS 196 (611)
Q Consensus 139 ~~L~~l~~V~~~y~~~l~EesIrdNff~IyellDEivd~GypE~~~-~~qvk~yi~meS 196 (611)
++||++++++.+||+.++|++|++||+.+|++||||||+|||+.++ .+.+|.+++||.
T Consensus 82 e~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~ 140 (142)
T 2vgl_S 82 EAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140 (142)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999885 666999998875
No 5
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=99.94 E-value=4.6e-27 Score=238.15 Aligned_cols=139 Identities=18% Similarity=0.269 Sum_probs=120.5
Q ss_pred CcccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCC---------CC---CCccccCcccCcc
Q psy12905 465 GHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKD---------TR---GIQMQTHPNVDKE 532 (611)
Q Consensus 465 ~~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~---------~~---~~qfKtHPnVDK~ 532 (611)
-.+++|||+|+|+|++.+++||.+.+++|+|+|.|+++++|+|.++|.|++.. .+ -+||+||||||++
T Consensus 9 y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~ 88 (266)
T 4en2_M 9 YRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQCVRLS 88 (266)
T ss_dssp CSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCTTSCCBCCEEEEECTTBCHH
T ss_pred cccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccccccCccCccccccccccCHh
Confidence 37899999999999999999999999999999999999999999999997631 11 3699999999999
Q ss_pred cccCCCeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEee-ccccccceeEEEccCC
Q psy12905 533 LFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELE-HEEKELNQVTISIPLP 611 (611)
Q Consensus 533 ~F~s~~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl~-~~~~~L~dV~I~IPlP 611 (611)
.|+++++|+|+|||++|++ |+||++. ...+||.|+||+++.+.+.++++++++.+ .....++||.|.||+|
T Consensus 89 ~f~~~r~i~f~PPdg~F~L------m~yr~~~--~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~I~IP~P 160 (266)
T 4en2_M 89 RFENDRTISFIPPDGEFEL------MSYRLNT--HVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVP 160 (266)
T ss_dssp HHHHHCCCEECCCSEEEEE------EEEEECC--CCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEEEEEECC
T ss_pred HccccceEEEeCCCCceEE------EEEEecC--CCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEEEEECCC
Confidence 9999999999999999987 9999987 45799999999998765455555555444 2346799999999998
No 6
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=99.93 E-value=3.6e-26 Score=236.08 Aligned_cols=135 Identities=18% Similarity=0.253 Sum_probs=114.9
Q ss_pred CcccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCC-----------------CCC---Cccc
Q psy12905 465 GHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKD-----------------TRG---IQMQ 524 (611)
Q Consensus 465 ~~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~-----------------~~~---~qfK 524 (611)
-.+++|||+|.|+|++.+++||.|.++||+|+|+|+++++|+|.++|.|++.. ..+ +||+
T Consensus 47 y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~ 126 (314)
T 1i31_A 47 YRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCT 126 (314)
T ss_dssp CSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEEEEEECSSSCEEEEEESCCC-----------------CCCCCCSEEE
T ss_pred cccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEcCCCCeEEEEECCchhccccccccccccccccCCceEccccc
Confidence 37899999999999999999999999999999999999999999999998741 122 6999
Q ss_pred cCcccCcccccCCCeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEeec-----ccc
Q psy12905 525 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEH-----EEK 599 (611)
Q Consensus 525 tHPnVDK~~F~s~~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl~~-----~~~ 599 (611)
||||||++.|+++++|+|+||||+|++ |+||++. +..+||.|+||+++.++ + ++||++.. ...
T Consensus 127 FHpcV~l~~f~~~r~IsFiPPDG~F~L------m~Yr~~~--~~~lP~~v~~~~~~~g~--~--~iE~~l~~~~~~~~~~ 194 (314)
T 1i31_A 127 FHQCVRLSKFDSERSISFIPPDGEFEL------MRYRTTK--DIILPFRVIPLVREVGR--T--KLEVKVVIKSNFKPSL 194 (314)
T ss_dssp ECTTSBCC----CCCEEECCCSEEEEE------EEEEECS--SCCCCEEEEEEEEEETT--T--EEEEEEEEEECSCTTC
T ss_pred ccccccHHHcCCcceEEEECCCCCeEE------EEEEecC--CcCCCEEEEEEEEecCC--c--EEEEEEEEccCCCCcc
Confidence 999999999999999999999999987 9999987 67799999999998663 3 56666642 235
Q ss_pred ccceeEEEccCC
Q psy12905 600 ELNQVTISIPLP 611 (611)
Q Consensus 600 ~L~dV~I~IPlP 611 (611)
.++||.|.||+|
T Consensus 195 ~~~nV~I~IP~P 206 (314)
T 1i31_A 195 LAQKIEVRIPTP 206 (314)
T ss_dssp EEEEEEEEEECC
T ss_pred eeeEEEEEEECC
Confidence 699999999998
No 7
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=237.07 Aligned_cols=139 Identities=17% Similarity=0.311 Sum_probs=119.0
Q ss_pred cccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCC----------CCC---CccccCcccCcc
Q psy12905 466 HRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKD----------TRG---IQMQTHPNVDKE 532 (611)
Q Consensus 466 ~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~----------~~~---~qfKtHPnVDK~ 532 (611)
.+++|||+|+|+|++.+++||.+.+++|+|+|.|+++++|+|.++|.|++.. ..+ ++|+||||||++
T Consensus 31 ~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~~~~~~~l~d~~fH~cV~~~ 110 (301)
T 3l81_A 31 QKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYGPGIRVDEVSFHSSVNLD 110 (301)
T ss_dssp --CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTCCCSSSEESEEEEETTCBCT
T ss_pred CcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcccccccccccccccCceEccccccccccChh
Confidence 5789999999999999999999999999999999999999999999998541 112 699999999999
Q ss_pred cccCCCeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEeec---cccccceeEEEcc
Q psy12905 533 LFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEH---EEKELNQVTISIP 609 (611)
Q Consensus 533 ~F~s~~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl~~---~~~~L~dV~I~IP 609 (611)
.|+++++|+|+|||++|++ |+||++..++..+||.|+||+++.+ +++.|.+++.+.. ....++||.|.||
T Consensus 111 ~f~~~r~IsFiPPDg~F~L------m~Yr~~~~~~~~~P~~v~~~v~~~~-~~~~ie~~l~l~~~f~~~~~~~nV~I~IP 183 (301)
T 3l81_A 111 EFESHRILRLQPPQGELTV------MRYQLSDDLPSPLPFRLFPSVQWDR-GSGRLQVYLKLRCDLLSKSQALNVRLHLP 183 (301)
T ss_dssp THHHHCEEEECCCSEEEEE------EEEEECSCCSSCCSEEEEEEEEECT-TTSEEEEEEEEEECSCTTCEEEEEEEEEE
T ss_pred HccccceEEecCCCCeeEE------EEEEecCCCccCCCEEEEEEEEECC-CcEEEEEEEEEecCCCCCcEEEEEEEEEc
Confidence 9999999999999999987 9999988666679999999999976 3454444444432 3358999999999
Q ss_pred CC
Q psy12905 610 LP 611 (611)
Q Consensus 610 lP 611 (611)
+|
T Consensus 184 vP 185 (301)
T 3l81_A 184 LP 185 (301)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 8
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=99.93 E-value=1e-25 Score=239.09 Aligned_cols=138 Identities=17% Similarity=0.255 Sum_probs=118.4
Q ss_pred cccceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCCCCeEEEEecCCC-----------------CCC---Ccccc
Q psy12905 466 HRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKD-----------------TRG---IQMQT 525 (611)
Q Consensus 466 ~q~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~~~~ikI~L~~~~-----------------~~~---~qfKt 525 (611)
.+++|||+|+|+|++.+++||.|.+++|+|+|.|+++++|+|.++|.||+.. .++ ++|+|
T Consensus 119 ~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~~~~~~~i~l~d~~F 198 (385)
T 3ml6_A 119 SRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTF 198 (385)
T ss_dssp CCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------------CCCCEEEE
T ss_pred ccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccccccccCceEcccccc
Confidence 6889999999999999999999999999999999999999999999997641 012 69999
Q ss_pred CcccCcccccCCCeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEEEecCCCCCCceEEEEEEEee-cccccccee
Q psy12905 526 HPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELE-HEEKELNQV 604 (611)
Q Consensus 526 HPnVDK~~F~s~~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIncWpse~~dg~~~V~IEYEl~-~~~~~L~dV 604 (611)
|||||++.|+++++|+++|||++|++ |+||++. +..+||+|+||+++.+++.++++++++.+ .....++||
T Consensus 199 H~CV~l~~f~~~r~IsFiPPDg~F~L------m~Yr~~~--~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~~~~~nV 270 (385)
T 3ml6_A 199 HQCVRLSKFDSERSISFIPPDGEFEL------MRYRTTK--DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKI 270 (385)
T ss_dssp CTTBCCCCSSSCSEEEECCCSEEEEE------EEEEECS--SCCCSEEEEEEEEEETTTEEEEEEEEEECSCTTCCEEEE
T ss_pred ccccChhHccccceEEEeCCCCceEE------EEEEcCC--CCCCCEEEEEEEEeCCCeEEEEEEEEeecCCCcceEEEE
Confidence 99999999999999999999999987 9999876 67799999999998764444444444443 344689999
Q ss_pred EEEccCC
Q psy12905 605 TISIPLP 611 (611)
Q Consensus 605 ~I~IPlP 611 (611)
.|.||+|
T Consensus 271 ~I~IP~P 277 (385)
T 3ml6_A 271 EVRIPTP 277 (385)
T ss_dssp EEEEECC
T ss_pred EEEecCC
Confidence 9999998
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.87 E-value=2.5e-22 Score=188.82 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=114.0
Q ss_pred hhhhhhccCCCceeeeeccc-cc-c---hHHHHHHHhhhhhcccCCCcccEEEeCCEEEEEEecCCEEEEEEecCcchHH
Q psy12905 61 CYLSRTCRSIGIAIVSRQFV-EM-T---RARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNIL 135 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyr-di-s---r~riE~lL~~FpkL~~~g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~ 135 (611)
+.|+.|+|++||++++|.|+ ++ + +..+|. ..|.+ +.. ...|+++.++..|+|.++.+||++++++.|.|.+
T Consensus 13 I~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~--~i~~~-~~r-~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel 88 (153)
T 3tjz_C 13 VKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEK--NIFNK-THR-TDSEIALLEGLTVVYKSSIDLYFYVIGSSYENEL 88 (153)
T ss_dssp EEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHH--HHHHH-HSS-CCCCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred heEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHH--HHHHH-HhC-CCCCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence 67899999999999999999 53 4 333442 23444 332 2369999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhc-cCcchhhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccch
Q psy12905 136 EDLETLRLFSRVIPEYC-RTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSH 197 (611)
Q Consensus 136 ~dl~~L~~l~~V~~~y~-~~l~EesIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSh 197 (611)
..+++||++++++..|| +.++|++|++||..+|++||||||+|||+.|+.+.|..+++|.+.
T Consensus 89 ~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~~ 151 (153)
T 3tjz_C 89 MLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGE 151 (153)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcccC
Confidence 99999999999999999 899999999999999999999999999999999999999998664
No 10
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=97.03 E-value=0.00016 Score=77.50 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=49.6
Q ss_pred CccCCCChhHHHHhhhhhhhhhHHHHhcccccccchhhhhhhhhccccchhhh
Q psy12905 2 EYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVY 54 (611)
Q Consensus 2 ~~~~~~~e~~i~~~af~ll~afdEii~~G~re~v~~~Qi~~~~em~sheek~~ 54 (611)
+||+.++|.+|.+|++.+...+||++..||+++.+.++++.+++|++|++++.
T Consensus 91 ~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~ 143 (435)
T 2vgl_M 91 AYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQ 143 (435)
T ss_dssp HHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC--
T ss_pred HHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccc
Confidence 68999999999999999999999999999999999999999999999998863
No 11
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.88 E-value=0.00032 Score=74.87 Aligned_cols=49 Identities=24% Similarity=0.561 Sum_probs=47.9
Q ss_pred CccCCCChhHHHHhhhhhhhhhHHHHhcccccccchhhhhhhhhccccc
Q psy12905 2 EYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHE 50 (611)
Q Consensus 2 ~~~~~~~e~~i~~~af~ll~afdEii~~G~re~v~~~Qi~~~~em~she 50 (611)
+||+.++|.+|.+|++.+...+||++..||+++.+.++|++|++|++|+
T Consensus 93 ~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~ 141 (423)
T 1w63_M 93 EYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHK 141 (423)
T ss_dssp HHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCC
T ss_pred HHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCcc
Confidence 6899999999999999999999999999999999999999999999998
No 12
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.04 Score=57.70 Aligned_cols=127 Identities=16% Similarity=0.275 Sum_probs=84.6
Q ss_pred cceeEEEEEEEEEEEeecCceeEEEEEEEEEEEEecCC------CCeEEEEecCCCC-----CCCccccCcccCcccccC
Q psy12905 468 LQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEK------YGRIKVLLANKDT-----RGIQMQTHPNVDKELFKS 536 (611)
Q Consensus 468 ~qVHV~IeEKIs~~lsRDG~V~s~EVkG~L~LrI~d~~------~~~ikI~L~~~~~-----~~~qfKtHPnVDK~~F~s 536 (611)
-++..-|.|.||+.+ ++|.+....|.|+|.|.-.... -+.+.+.|++-.. .+-+|=. ++....|.
T Consensus 68 pGLnASI~E~VNA~F-kgg~~tk~~v~GEiaLsy~~~~~s~~p~p~~l~fRL~N~~~Lekv~pN~~fv~--~~~~~eF~- 143 (328)
T 3g9h_A 68 FGLNASIAEVLNASF-KDGMLQNSQLIGEIALNYLPNSVMNSPLPIGINLRINNGAKFEKVILNQAFIE--RVAPEEFK- 143 (328)
T ss_dssp CEEEEEEEEEEEEEE-ETTEEEEEEEEEEEEEEEECCSSSCCCCCSEEEEEEETGGGEEEEEECTTTEE--EEETTEEE-
T ss_pred CceeEEEEEEEEEEE-ECCcEEEEEEEEEEEEecCCCccccCCCCccEEEEecCcchhheeeCCHHHhc--cCCCCCEE-
Confidence 368889999999999 5789999999999999976542 2456777764311 0111111 11112221
Q ss_pred CCeEEeeCCCCCCCCCCceeeEEeeccCCCCCcCCeEEE-EecCCCCCCceEEEEEEEeecc------ccccceeEEEcc
Q psy12905 537 KTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSIN-CWPSDNGSGGCDVNIEYELEHE------EKELNQVTISIP 609 (611)
Q Consensus 537 ~~iL~LKdp~K~FPvn~~vgVLKWR~~~~Des~lPLsIn-cWpse~~dg~~~V~IEYEl~~~------~~~L~dV~I~IP 609 (611)
+.. ++=....+++|||++.. ..+||.+. .|=-+. ..++|.|.|.++.. ...|+||+|.+|
T Consensus 144 -----vn~---~~L~sktv~~lKYqVs~---~~~PL~l~p~WK~E~--~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~V~ 210 (328)
T 3g9h_A 144 -----VNP---SFIDSRTLGAIKYSIKE---PIAPIVIHPVWRFES--HQASVVLTVKMSPSLPDEISQIVIEDLVVFVN 210 (328)
T ss_dssp -----ECT---TTTBTCEEEEEEEEEES---CCCSEEEEEEEEECS--SEEEEEEEEEECTTSCTTCCEEEEEEEEEEEE
T ss_pred -----Ech---HHhcccceeeEEEEECC---CCCCeEEEeeeecCC--CeeEEEEEEEECCCCcCcCCCceeeeEEEEEE
Confidence 111 11112458999999953 67899998 676654 36899999999742 457999999999
Q ss_pred CC
Q psy12905 610 LP 611 (611)
Q Consensus 610 lP 611 (611)
+.
T Consensus 211 ld 212 (328)
T 3g9h_A 211 ID 212 (328)
T ss_dssp BC
T ss_pred eC
Confidence 73
No 13
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.14 E-value=0.00094 Score=62.51 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=47.6
Q ss_pred CccCCCChhHHHHhhhhhhhhhHHHHhcccccccchhhhhhhhhccccchh
Q psy12905 2 EYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEK 52 (611)
Q Consensus 2 ~~~~~~~e~~i~~~af~ll~afdEii~~G~re~v~~~Qi~~~~em~sheek 52 (611)
+||++++|.+|.+|.+.+...+||++..||+.+.+.++|+.++.|+++-++
T Consensus 93 ~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~~ 143 (158)
T 1w63_Q 93 KYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQE 143 (158)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhhh
Confidence 588999999999999999999999999999999999999999999887544
No 14
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=95.34 E-value=0.0046 Score=56.58 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=42.8
Q ss_pred CccCCCChhHHHHhhhhhhhhhHHHHhcccccccchhh-hhhhhhccc
Q psy12905 2 EYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQ-VRTFVEMDS 48 (611)
Q Consensus 2 ~~~~~~~e~~i~~~af~ll~afdEii~~G~re~v~~~Q-i~~~~em~s 48 (611)
+||++++|.+|.+|.+.+...+||++..||+.+.|-++ +|.+.+||.
T Consensus 93 ~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~ 140 (142)
T 2vgl_S 93 EYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140 (142)
T ss_dssp HHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhc
Confidence 58999999999999999999999999999999998888 777887764
No 15
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=87.24 E-value=1.8 Score=40.39 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=72.0
Q ss_pred hhhhhhccCCCceeeeecccccchHHHH-HHHhhhhhccc------CCCcccEEE-eCCEEEEEEecCCEEEEEEecCcc
Q psy12905 61 CYLSRTCRSIGIAIVSRQFVEMTRARIE-GLLAAFPKLMS------SGKQHTFVE-TDSVRYVYQPLEKLYMLLITTKTS 132 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqyrdisr~riE-~lL~~FpkL~~------~g~~ht~ve-~e~VrYvY~p~~~lYlvliT~knS 132 (611)
+.|+.|+|+.|-||+..-.-+.+..+.+ ++|+.|..-.+ -|+..+++. .++...|..-...||+-+++.+++
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 5789999999999999887765554443 77888865432 266666654 578777777888999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhccCc
Q psy12905 133 NILEDLETLRLFSRVIPEYCRTL 155 (611)
Q Consensus 133 NI~~dl~~L~~l~~V~~~y~~~l 155 (611)
|+=..+..=..|..++.+.-..+
T Consensus 118 NtG~Il~Le~~L~p~l~~L~~~v 140 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEELRQVV 140 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CchhHhhhHHHHHHHHHHHHHHe
Confidence 99998888777777776654433
No 16
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=84.42 E-value=1.6 Score=39.89 Aligned_cols=73 Identities=7% Similarity=0.069 Sum_probs=44.6
Q ss_pred HHH-hhhhhhccCCCceeeeecccccch------HHH------HHHHhhhhhcccCCCcccEEEeCCE----EEEEEecC
Q psy12905 58 RKV-CYLSRTCRSIGIAIVSRQFVEMTR------ARI------EGLLAAFPKLMSSGKQHTFVETDSV----RYVYQPLE 120 (611)
Q Consensus 58 rmv-vlaa~Il~~~Gk~LIsRqyrdisr------~ri------E~lL~~FpkL~~~g~~ht~ve~e~V----rYvY~p~~ 120 (611)
||+ +.+++|++++|.+|-.|.|-.-.+ .+. -++|+.+.++.....+.-...++.. -|.|+...
T Consensus 2 ~M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~t 81 (142)
T 2j3w_A 2 EMSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAG 81 (142)
T ss_dssp CCCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTT
T ss_pred ccceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCC
Confidence 687 899999999999999999974321 111 1111222222211222222333332 48899999
Q ss_pred CEEEEEEecC
Q psy12905 121 KLYMLLITTK 130 (611)
Q Consensus 121 ~lYlvliT~k 130 (611)
++=+|++|..
T Consensus 82 g~Kfvl~~d~ 91 (142)
T 2j3w_A 82 HMRFIMLHDV 91 (142)
T ss_dssp CCEEEEEESS
T ss_pred CcEEEEEeCC
Confidence 9989888875
No 17
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=62.96 E-value=2.4 Score=39.41 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=39.6
Q ss_pred Ccc-CCCChhHHHHhhhhhhhhhHHHHhcccccccchhhhhhhhhccc
Q psy12905 2 EYC-RTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDS 48 (611)
Q Consensus 2 ~~~-~~~~e~~i~~~af~ll~afdEii~~G~re~v~~~Qi~~~~em~s 48 (611)
.|| +.++|.+|.+|.=-+....||++-.||.-..+.+.|...+.|.+
T Consensus 103 ~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 103 QMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp HHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 467 78999999999888888999999999999999999999988754
No 18
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=61.92 E-value=34 Score=33.00 Aligned_cols=159 Identities=11% Similarity=0.094 Sum_probs=92.6
Q ss_pred hhhhhhccCCC-ceeeeecccccc------hHHHHHHHhhhhhcccC---CCcccEEEeCCEEEE-EEecCCEEEEEEec
Q psy12905 61 CYLSRTCRSIG-IAIVSRQFVEMT------RARIEGLLAAFPKLMSS---GKQHTFVETDSVRYV-YQPLEKLYMLLITT 129 (611)
Q Consensus 61 vlaa~Il~~~G-k~LIsRqyrdis------r~riE~lL~~FpkL~~~---g~~ht~ve~e~VrYv-Y~p~~~lYlvliT~ 129 (611)
++|+.|+.+.| ++++=-...|++ |..+-.++..+-+.+.. ..+.-.++.++..|- |..-+++..+++|.
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~itd 83 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIAD 83 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEEEC
Confidence 45666766544 454444444665 66666666555544321 123345667777666 99999999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhhhccC--cchhhHhhhhHHHHHHHHHHHHc-Cccc-ccchhhhhHHhh------------
Q psy12905 130 KTSNILEDLETLRLFSRVIPEYCRT--LDENEVTDNAFSLIFAFDEIVAL-GYRE-SVNLAQVRTFVE------------ 193 (611)
Q Consensus 130 knSNI~~dl~~L~~l~~V~~~y~~~--l~EesIrdNff~IyellDEivd~-GypE-~~~~~qvk~yi~------------ 193 (611)
+.-.--.-+.||..+.+-|..-++. .....-+.-.| --||+.|.. .-|. .=.+.+|+.=|+
T Consensus 84 ~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~f---~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM~~NI~~ 160 (199)
T 3kyq_A 84 SEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHY---TALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMES 160 (199)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCCC---CTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEEESSGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccchhhhccccccccc---HHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888899999888887655542 11111111112 247887764 2222 233445554332
Q ss_pred ccchhHHHHHHHHH----HHHHHHHHHHHHHHH
Q psy12905 194 MDSHEEKVYQAVRK----REAENKMREKAKELK 222 (611)
Q Consensus 194 meSheEki~~~i~~----~EAke~~krkAkel~ 222 (611)
+=.-.|||-.++.+ ......-++.|+++.
T Consensus 161 vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~ln 193 (199)
T 3kyq_A 161 LLERGEKLDDLVSKSEVLGTQSKAFYKTARKQN 193 (199)
T ss_dssp TSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11224567777777 444445566665543
No 19
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=45.49 E-value=36 Score=35.13 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhhccC---cchhhHhhhhHHHHHHHHH-----HHHcC-cccccchhhhhH
Q psy12905 140 TLRLFSRVIPEYCRT---LDENEVTDNAFSLIFAFDE-----IVALG-YRESVNLAQVRT 190 (611)
Q Consensus 140 ~L~~l~~V~~~y~~~---l~EesIrdNff~IyellDE-----ivd~G-ypE~~~~~qvk~ 190 (611)
.+--|+++++.|-.+ +.+..+.|.+--++.+|++ ++..| |||.+-..|++.
T Consensus 123 ~~vefakLlr~y~~~K~~l~~~~~ldAY~~vi~aLhh~ArL~vie~G~~pe~tvw~qv~~ 182 (290)
T 3c18_A 123 MSLSFAKLLRRFQDGRNLFSRGNYYDAYTHVHHALHHLARLSVLEKGAHPEVVVWEQARL 182 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhheeccCCcCchhHHHHHHh
Confidence 445577888887643 7899999999999999997 56789 899999999987
No 20
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=42.62 E-value=51 Score=30.12 Aligned_cols=91 Identities=10% Similarity=0.041 Sum_probs=53.7
Q ss_pred HHhhhhhhccCCCceeeeeccc-c----cchHHHHHHHh-hhhhc------ccC--C-CcccEEEeCCE-EEEEEecCCE
Q psy12905 59 KVCYLSRTCRSIGIAIVSRQFV-E----MTRARIEGLLA-AFPKL------MSS--G-KQHTFVETDSV-RYVYQPLEKL 122 (611)
Q Consensus 59 mvvlaa~Il~~~Gk~LIsRqyr-d----isr~riE~lL~-~FpkL------~~~--g-~~ht~ve~e~V-rYvY~p~~~l 122 (611)
|++.+++|+++.|.+|-.|.|- . +++..-..++. .+..+ +.. + ..--.++++.. -+.|+...++
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 6788999999999999999995 2 22122222221 11111 111 2 22355677775 7899999999
Q ss_pred EEEEEecCcchHHHHHHHHHHHH-HHhhhh
Q psy12905 123 YMLLITTKTSNILEDLETLRLFS-RVIPEY 151 (611)
Q Consensus 123 YlvliT~knSNI~~dl~~L~~l~-~V~~~y 151 (611)
=+|++|..+.+- .=.+|+.+- ++.-+|
T Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 81 KVVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp EEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred EEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 988888754322 124444444 444444
No 21
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=35.46 E-value=68 Score=30.34 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=40.6
Q ss_pred ccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHHHHHHHHHHHhhhhc
Q psy12905 104 HTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYC 152 (611)
Q Consensus 104 ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl~~L~~l~~V~~~y~ 152 (611)
.-.++.++..|-|..-+++-.+++|.+.----..+.||..+.+-|..-+
T Consensus 43 k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~ 91 (189)
T 4b93_A 43 KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY 91 (189)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhc
Confidence 3456889999999999999999999998888888889988877775443
No 22
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=34.05 E-value=2.9e+02 Score=25.84 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=42.4
Q ss_pred ccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHHHHHHHHHHHhhhhcc
Q psy12905 104 HTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCR 153 (611)
Q Consensus 104 ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl~~L~~l~~V~~~y~~ 153 (611)
.-.++.++..|-|.--+++-.+++|.+.----..+.||..+.+-|..-++
T Consensus 85 r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y~ 134 (169)
T 2vx8_A 85 KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYG 134 (169)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHHHHHhh
Confidence 34567789999999889999999999999999999999999888866554
No 23
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=32.25 E-value=2.7e+02 Score=24.66 Aligned_cols=89 Identities=6% Similarity=0.019 Sum_probs=62.6
Q ss_pred hhhhhccCCCceeeeecccccchHHHHHHHhhhhhcc--------cCCC-cccEEEeCCEEEEEEecCCEEEEEEecCcc
Q psy12905 62 YLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLM--------SSGK-QHTFVETDSVRYVYQPLEKLYMLLITTKTS 132 (611)
Q Consensus 62 laa~Il~~~Gk~LIsRqyrdisr~riE~lL~~FpkL~--------~~g~-~ht~ve~e~VrYvY~p~~~lYlvliT~knS 132 (611)
-++.+++++|-++-+-..-+..-.++-.+.+.+..+. ..|. ..+++|.++=..+-.+.++.+|++++..+.
T Consensus 20 ~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~l~i~~a~~a~L~Vla~~~a 99 (125)
T 1vet_B 20 QSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKETV 99 (125)
T ss_dssp EEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred eEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCEEEEEEcCCeEEEEEeCCCC
Confidence 4567899999777665554555555555555665541 1133 458999877666666669999999999999
Q ss_pred hHHHHHHHHHHHHHHhhh
Q psy12905 133 NILEDLETLRLFSRVIPE 150 (611)
Q Consensus 133 NI~~dl~~L~~l~~V~~~ 150 (611)
|+=..---++++++-+..
T Consensus 100 ~lGlv~~~m~~lv~~L~~ 117 (125)
T 1vet_B 100 GFGMLKAKAQALVQYLEE 117 (125)
T ss_dssp CHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHhh
Confidence 988888888887755443
No 24
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=31.05 E-value=92 Score=28.07 Aligned_cols=72 Identities=7% Similarity=0.003 Sum_probs=39.9
Q ss_pred hhHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy12905 158 NEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKREAENKMREKAKELKRQRMESAKKFP 233 (611)
Q Consensus 158 esIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~~i~~~EAke~~krkAkel~~~r~e~~~~~~ 233 (611)
+-+-.|..+++.+++++...|-. -++++ .-++..+...++...|.-.=|..|++...+..++....+.++|.
T Consensus 85 dRl~R~~~~~~~~~~~l~~~gv~-l~~~~---~~~d~~~~~~~~~~~i~~~~ae~E~~~~~~R~~~g~~~~~~~G~ 156 (169)
T 3g13_A 85 SRFARNTLDTLKYVRMLKERNIA-VYFED---EKINTLTMDGELLLVVLSSVAQQEVENISANVKKGLKMKMKRGE 156 (169)
T ss_dssp HHHCSSHHHHHHHHHHHHTTTCE-EEETT---TTEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCS
T ss_pred cccccChHHHHHHHHHHHHcCCE-EEEec---CCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34455677788888888777732 12222 22333344455555455545666666666666666655555544
No 25
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=30.81 E-value=2.2e+02 Score=26.74 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=40.3
Q ss_pred ccEEEeCCEEEEEEecCCEEEEEEecCcchHHHHHHHHHHHHHHhhhhc
Q psy12905 104 HTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYC 152 (611)
Q Consensus 104 ht~ve~e~VrYvY~p~~~lYlvliT~knSNI~~dl~~L~~l~~V~~~y~ 152 (611)
.-.++.++..|-|..-+++..+++|...-.--..+.||..+.+-|..-+
T Consensus 52 r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~ 100 (196)
T 2nut_C 52 RCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQH 100 (196)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhc
Confidence 3456778888889999999999999998888888999988887775533
No 26
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=30.39 E-value=77 Score=29.46 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=44.4
Q ss_pred HHhhhhhhccCCCceeeeecccc-----------cchHHHHHHHh-hhhhc------ccC-C--CcccEEEeCCE-EEEE
Q psy12905 59 KVCYLSRTCRSIGIAIVSRQFVE-----------MTRARIEGLLA-AFPKL------MSS-G--KQHTFVETDSV-RYVY 116 (611)
Q Consensus 59 mvvlaa~Il~~~Gk~LIsRqyrd-----------isr~riE~lL~-~FpkL------~~~-g--~~ht~ve~e~V-rYvY 116 (611)
|++.+++|+++.|.+|-.|.|-. .....-..++. .+-.| +.. + ...-.++++.. -|.|
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~ 80 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY 80 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence 67889999999999999999942 11122112221 11111 111 1 22345666654 6888
Q ss_pred EecCCEEEEEEecCc
Q psy12905 117 QPLEKLYMLLITTKT 131 (611)
Q Consensus 117 ~p~~~lYlvliT~kn 131 (611)
+...++=+|++|..+
T Consensus 81 eT~TgiKFvl~td~~ 95 (159)
T 3cue_C 81 CTASGLWFVLLSDFK 95 (159)
T ss_dssp CCSSCCEEEEECCSS
T ss_pred EeCCCCEEEEEeCCC
Confidence 988999888888754
No 27
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=29.91 E-value=2.2e+02 Score=27.38 Aligned_cols=88 Identities=10% Similarity=0.085 Sum_probs=54.0
Q ss_pred hhhhccCCCceeeeeccc-ccchHHHHHHHhhhhhcccCCCcccEEEeCCEEEEEEecCC--EEEEEEecCcchHHHHHH
Q psy12905 63 LSRTCRSIGIAIVSRQFV-EMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEK--LYMLLITTKTSNILEDLE 139 (611)
Q Consensus 63 aa~Il~~~Gk~LIsRqyr-disr~riE~lL~~FpkL~~~g~~ht~ve~e~VrYvY~p~~~--lYlvliT~knSNI~~dl~ 139 (611)
-+.|.++.|=+|-+.+-. ....+.|..|+.. -++++....+.+..|+.+.-|.-.++ |.+|++=.+-.+..-.=+
T Consensus 13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~--VlLEER~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~ 90 (185)
T 2fh5_A 13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRS--VLLQERGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK 90 (185)
T ss_dssp EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHH--TGGGC-------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred EEEEEeCCeEEEEeecCCcccccchHHHHHHH--hhhccccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence 356999999999986433 3434556655421 12554333456777988888888875 777777777666666666
Q ss_pred HHHHHHHHhhhhc
Q psy12905 140 TLRLFSRVIPEYC 152 (611)
Q Consensus 140 ~L~~l~~V~~~y~ 152 (611)
+|..+...|.+.+
T Consensus 91 LL~~v~~~Fv~~Y 103 (185)
T 2fh5_A 91 LIDDVHRLFRDKY 103 (185)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 6777766666655
No 28
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=29.66 E-value=1.8e+02 Score=29.79 Aligned_cols=30 Identities=10% Similarity=0.305 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHH-cCcc-cccchhh----hhHHhhc
Q psy12905 165 FSLIFAFDEIVA-LGYR-ESVNLAQ----VRTFVEM 194 (611)
Q Consensus 165 f~IyellDEivd-~Gyp-E~~~~~q----vk~yi~m 194 (611)
-.+-..+++++. ||+. ..++..+ +.+|+.+
T Consensus 269 ~~~~~~~~~l~~yfged~~~~~~~~fF~~~~~F~~~ 304 (340)
T 1v9d_A 269 SNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNM 304 (340)
T ss_dssp HHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 345567788886 5753 3444443 5556554
No 29
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=28.77 E-value=1.2e+02 Score=28.66 Aligned_cols=89 Identities=12% Similarity=0.099 Sum_probs=57.8
Q ss_pred HHHhhhhhhccCCCceeeeecccccch---HHHHHHHhhhhhcccCCCcccEEEeCCEEEEEEecCCEEEEEEecCcchH
Q psy12905 58 RKVCYLSRTCRSIGIAIVSRQFVEMTR---ARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITTKTSNI 134 (611)
Q Consensus 58 rmvvlaa~Il~~~Gk~LIsRqyrdisr---~riE~lL~~FpkL~~~g~~ht~ve~e~VrYvY~p~~~lYlvliT~knSNI 134 (611)
+|.++-+.|. +|..+|+. |.+-+. .....+|.+. ....+.-.++.++..|-|.--+++-.+++|.++---
T Consensus 53 ~M~I~Ya~VA--rg~tiLAE-~t~~~gnf~~va~~iL~ki----p~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~r 125 (173)
T 4afi_A 53 AMAILFAVVA--RGTTILAK-HAWCGGNFLEVTEQILAKI----PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFER 125 (173)
T ss_dssp CCCEEEEEEE--ETTEEEEE-EESSCCCHHHHHHHHHTTS----CSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred cccEEEEEEE--CCCEEEEE-ccCCCCCHHHHHHHHHHhC----CCCCCeEEEEECCEEEEEEEECCEEEEEEECCccCh
Confidence 5666666664 46666663 443221 1111222121 112234566889999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhhhhcc
Q psy12905 135 LEDLETLRLFSRVIPEYCR 153 (611)
Q Consensus 135 ~~dl~~L~~l~~V~~~y~~ 153 (611)
-..+.||..+.+-|..-++
T Consensus 126 r~aF~FLedI~~eF~~~yg 144 (173)
T 4afi_A 126 SRAFSFLNEVKKRFQTTYG 144 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 8899999888877755443
No 30
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=25.70 E-value=2.6e+02 Score=27.63 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=20.9
Q ss_pred HHhhhhhhccCCCceeeeeccc-cc
Q psy12905 59 KVCYLSRTCRSIGIAIVSRQFV-EM 82 (611)
Q Consensus 59 mvvlaa~Il~~~Gk~LIsRqyr-di 82 (611)
|+|.+++|++|.|..|-.|+|. +.
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~ 25 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDE 25 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCC
T ss_pred CeeEEEEEEeCCCCEEeehhhccCc
Confidence 6789999999999999999997 44
No 31
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=24.97 E-value=3.3e+02 Score=25.19 Aligned_cols=94 Identities=9% Similarity=0.080 Sum_probs=63.4
Q ss_pred hhhhhhccCCCceeeeec---cccc-chHHHHHHHhhhhhc-------ccCCC-cccEEEeCCEEEEEEec-CCEEEEEE
Q psy12905 61 CYLSRTCRSIGIAIVSRQ---FVEM-TRARIEGLLAAFPKL-------MSSGK-QHTFVETDSVRYVYQPL-EKLYMLLI 127 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRq---yrdi-sr~riE~lL~~FpkL-------~~~g~-~ht~ve~e~VrYvY~p~-~~lYlvli 127 (611)
+-++.++++.|-++-+.+ .... .-.++-.+.+....+ +..|. ...+++.++-..+-.+. ++.||+++
T Consensus 29 v~~avlvs~DGl~ia~~~~~~~~~~~d~d~lAA~~A~~~sl~~~~a~~l~~G~~~q~~ve~~~g~l~v~~~g~~a~L~Vl 108 (163)
T 1j3w_A 29 ARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLV 108 (163)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHHTTCSSCSEEEEECSSCEEEEEESSTTEEEEEE
T ss_pred ceEEEEEcCCCCEEEeecccccCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCcEEEEEEeCCCeEEEEE
Confidence 567889999998877743 3322 333333333333333 22233 45889987655555555 56999999
Q ss_pred ecCcchHHHHHHHHHHHHHHhhhhccC
Q psy12905 128 TTKTSNILEDLETLRLFSRVIPEYCRT 154 (611)
Q Consensus 128 T~knSNI~~dl~~L~~l~~V~~~y~~~ 154 (611)
+.+++|+=...--++++++-+.+.+..
T Consensus 109 a~~~a~lG~v~~~m~~~v~~l~~~L~~ 135 (163)
T 1j3w_A 109 FDETAPLGKVKLHGKRASEALARIAEE 135 (163)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888887777654
No 32
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=22.01 E-value=61 Score=33.25 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q psy12905 208 REAENKMREKA 218 (611)
Q Consensus 208 ~EAke~~krkA 218 (611)
.+.|+.||+|-
T Consensus 167 ~d~k~~~k~kr 177 (279)
T 3p8c_D 167 QDTEDKRKEKR 177 (279)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 35555555553
No 33
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=21.96 E-value=96 Score=27.98 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=32.7
Q ss_pred hHhhhhHHHHHHHHHHHHcCcccccchhhhhHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q psy12905 159 EVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKREAENKMREKAKELKRQRMESAKKFP 233 (611)
Q Consensus 159 sIrdNff~IyellDEivd~GypE~~~~~qvk~yi~meSheEki~~~i~~~EAke~~krkAkel~~~r~e~~~~~~ 233 (611)
-+-.|..+++.+++++...|-.= +++++ -++..+...++..-|.-.=|..|++...+..++...++++.|.
T Consensus 86 Rl~R~~~~~~~~~~~l~~~gv~l-~~~~~---~~d~~~~~~~~~~~i~~~~ae~E~~~i~~R~~~g~~~~a~~G~ 156 (167)
T 3guv_A 86 RFARNAADVLSTLQIMQDYGVNL-ICVED---GIDSSKDAGKLMISVLSAVAEIERENIRIQTMEGCIQKAREGK 156 (167)
T ss_dssp GTCSSHHHHHHHHHHHHHTTCEE-EETTT---TEEGGGC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhcCCHHHHHHHHHHHHHCCCEE-EEeeC---CcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34455666777777776666321 11111 1111122233333333344555555565566666666666554
No 34
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=21.14 E-value=4.6e+02 Score=23.68 Aligned_cols=92 Identities=10% Similarity=0.101 Sum_probs=59.2
Q ss_pred hhhhhhccCCCceeeeecc---c-ccchHHHHHHHh-hh------hhcccCCC-cccEEEeCCEEEEEEec-CCEEEEEE
Q psy12905 61 CYLSRTCRSIGIAIVSRQF---V-EMTRARIEGLLA-AF------PKLMSSGK-QHTFVETDSVRYVYQPL-EKLYMLLI 127 (611)
Q Consensus 61 vlaa~Il~~~Gk~LIsRqy---r-disr~riE~lL~-~F------pkL~~~g~-~ht~ve~e~VrYvY~p~-~~lYlvli 127 (611)
+-++.++|++|-++-+.-. . ++.-..+-.+.+ +| -+++.++. +.-+++.+.-+-.-.+. ++..|+++
T Consensus 26 v~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~~la~~Lge~~~~~l~~eGe~~~i~i~~vg~~~iLvvi 105 (136)
T 3t12_B 26 ARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLV 105 (136)
T ss_dssp CSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHHHHHHHTTCSCCCCEEEECSSCEEEEEESSTTEEEEEE
T ss_pred CeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCchhHheEEcCcCCEEEEEcCCCEEEEEE
Confidence 4677899999999988754 2 444444443332 23 33344443 33566766555444555 56999999
Q ss_pred ecCcchHHHHHHHHHHHHHHhhhhc
Q psy12905 128 TTKTSNILEDLETLRLFSRVIPEYC 152 (611)
Q Consensus 128 T~knSNI~~dl~~L~~l~~V~~~y~ 152 (611)
+.+++|+=.+--.+++.++=+.+.+
T Consensus 106 fd~~~~LG~Vrl~~kka~~~l~~il 130 (136)
T 3t12_B 106 FDETAPLGKVKLHGKAAAAALAAIA 130 (136)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCceEeeehHHHHHHHHHHHH
Confidence 9999999888877777776665554
No 35
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=21.07 E-value=2e+02 Score=31.10 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=21.0
Q ss_pred HhhhhHHHHHHHHHHHH-cCccc-ccchhh----hhHHhhcc
Q psy12905 160 VTDNAFSLIFAFDEIVA-LGYRE-SVNLAQ----VRTFVEMD 195 (611)
Q Consensus 160 IrdNff~IyellDEivd-~GypE-~~~~~q----vk~yi~me 195 (611)
+.+.+-.+...|++++. ||... .++..+ +.+|+.+-
T Consensus 347 L~~~~~~~~~~~~~l~~yFGEd~~~~~~~~fF~~~~~F~~~f 388 (483)
T 2j1d_G 347 VEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAV 388 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34444567778888886 58654 444433 55565543
Done!