RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12905
(611 letters)
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Mus
musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Length = 142
Score = 116 bits (293), Expect = 5e-31
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
Query: 71 GIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLIT 128
G +++ +++ + L+ +++ K FVE + + +Y+ LY +
Sbjct: 12 GKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICV 71
Query: 129 TKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQV 188
N L LE + F V+ EY + E ++ N + + DE+ G + +V
Sbjct: 72 DVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKV 131
Query: 189 -RTFVEMDSHE 198
+ + + S E
Sbjct: 132 LKQLLMLQSLE 142
Score = 61.1 bits (148), Expect = 2e-11
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQV-RTFVEMDSHE 50
EY + E ++ N + + DE+ G + +V + + + S E
Sbjct: 92 NEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 423
Score = 87.7 bits (216), Expect = 1e-18
Identities = 26/160 (16%), Positives = 67/160 (41%), Gaps = 1/160 (0%)
Query: 71 GIAIVSRQFV-EMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITT 129
G ++ R + ++ + +E + + G + VR+++ LY++ +
Sbjct: 13 GKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSK 72
Query: 130 KTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVR 189
K + + L +V EY + L+E + DN + DE++ GY ++ + ++
Sbjct: 73 KNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQ 132
Query: 190 TFVEMDSHEEKVYQAVRKREAENKMREKAKELKRQRMESA 229
F+ + H+ + N + +++ +K ++ E
Sbjct: 133 EFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVF 172
Score = 39.6 bits (91), Expect = 0.002
Identities = 12/61 (19%), Positives = 27/61 (44%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKV 60
EY + L+E + DN + DE++ GY ++ + ++ F+ + H+ +
Sbjct: 92 SEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPA 151
Query: 61 C 61
Sbjct: 152 T 152
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 158
Score = 74.0 bits (181), Expect = 9e-16
Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
Query: 71 GIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLIT 128
G + + ++ + + ++ +++ + K +F+E ++ VY+ LY
Sbjct: 12 GKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAI 71
Query: 129 TKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQV 188
N L LE + + ++ +Y ++ E ++ N F DE + G + + V
Sbjct: 72 EGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSV 131
Query: 189 -RTFVEMDSHEEK 200
+ + D +E+
Sbjct: 132 LKAIEQADLLQEE 144
Score = 41.6 bits (97), Expect = 1e-04
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQV-RTFVEMDSHEEK 52
+Y ++ E ++ N F DE + G + + V + + D +E+
Sbjct: 92 DKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEE 144
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich,
coated PIT, golgi apparat membrane, phosphoprotein,
protein transport, transport; 1.60A {Homo sapiens}
Length = 301
Score = 69.9 bits (170), Expect = 3e-13
Identities = 27/160 (16%), Positives = 61/160 (38%), Gaps = 25/160 (15%)
Query: 469 QIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQ------ 522
++ L E+L + + NG + ++ G + L+ +++ L + + G
Sbjct: 34 EVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYG 93
Query: 523 -------MQTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSIN 575
+ H +V+ + F+S + L+ P + R+ +D+ PL
Sbjct: 94 PGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTV--------MRYQLSDDLPSPLPFR 145
Query: 576 CWPS-DNGSGGCDVNIEYELEHEEK---ELNQVTISIPLP 611
+PS G + + +L + + V + +PLP
Sbjct: 146 LFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLP 185
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV,
NEF, antigen presentation, HOST defense, adaptor protein
complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Length = 266
Score = 67.6 bits (164), Expect = 1e-12
Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 21/156 (13%)
Query: 469 QIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQ------ 522
++ L E + + V NG + E+ G + +R+ +++ L +K
Sbjct: 13 EVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSK 72
Query: 523 ------MQTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINC 576
++ H V F++ I P F L + + I
Sbjct: 73 SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFEL--------MSYRLNTHVKPLIWIES 124
Query: 577 WPSDNGSGGCDVNIEYELEHEEK-ELNQVTISIPLP 611
+ + ++ + + + + N V I IP+P
Sbjct: 125 VIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVP 160
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 4e-11
Identities = 80/562 (14%), Positives = 151/562 (26%), Gaps = 174/562 (30%)
Query: 103 QHTFVETDSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTD 162
H ET +Y Y+ +IL E + D +V D
Sbjct: 5 HHMDFETGEHQYQYK---------------DILSVFE---------DAFVDNFDCKDVQD 40
Query: 163 NAFSLIFA--FDEIVALGYRESVNLAQVRTFVEM--DSHEEKVYQAVRKREAENK--MRE 216
S++ D I+ S EE V + V + N +
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVS----GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 217 KAKELKRQRMESAKKFPKMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQT 276
K +RQ + + Y+ + V +
Sbjct: 97 PIKTEQRQPSMMTRMYI------------EQRDRLYNDNQV--------------FAKYN 130
Query: 277 VQREKKFRDIR-------------------IGRKSLENE---SYPLRIKIAQAILWKPAV 314
V R + + +R G+ + + SY ++ K+ I W
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---- 186
Query: 315 SAKAMKLGSKSHDVESFVDQLKSEGEKVISGPALSKVSTLSSKIPTTNISNMDSYSIFLF 374
+ L + E+ ++ L+ ++ P + S SS I + S L
Sbjct: 187 ----LNLK-NCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIK----LRIHSIQAELR 235
Query: 375 TLVMQVPKPRSF-------------RFENTLKTPFATSVNYHVNFSHLNKLLSIMFLLHR 421
L+ P F + K T + L +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-----FKQVTDFLSA----ATT 286
Query: 422 IHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLRQEEQLIIS 481
H+ + + + E+ LL KY L R Q L +E
Sbjct: 287 THISLDH-------HSMTLTPDEVKSLL------LKY-----LDCRPQ-DLPREVLTTNP 327
Query: 482 VGRNGGIETFELHGLLTLRISDEK--YGRIKVLLANKDTRGIQM---QTHPNVDKELFKS 536
++ I D + K + +K T I+ P +++F
Sbjct: 328 R----------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD- 376
Query: 537 KTEIGLKNPSKPFPLNNDI--GVLK--WRFTSTDE------SCLPLS-INCWPSDNGSGG 585
+ + FP + I +L W + S + P ++
Sbjct: 377 --RLSV------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 586 CDVNIEYELEHE-EKELNQVTI 606
+ +E +++ E E L++ +
Sbjct: 429 PSIYLELKVKLENEYALHRSIV 450
Score = 63.3 bits (153), Expect = 2e-10
Identities = 62/396 (15%), Positives = 109/396 (27%), Gaps = 140/396 (35%)
Query: 125 LLITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVN 184
+L+TT+ + + L + + TL +EV +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----LLL-------------- 308
Query: 185 LAQVRTFVEMDSHEEKVYQAVRKREAEN-----------KMREKAKELKRQRMESAKKFP 233
+++ + RE +R+ + + K
Sbjct: 309 -----KYLDCRPQDL-------PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 234 KMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQREKKFR-DIRIGRKS 292
+ SS + VLE A+ R + +V F I
Sbjct: 357 TI------------IESSLN------VLEPAE--YRKMFDRLSV-----FPPSAHIPTIL 391
Query: 293 LENESYPLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQL-------KSEGEKVISG 345
L ++W DV V++L K E IS
Sbjct: 392 LS-------------LIW----------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 346 PALSKVSTLSSKIPTTNISNM-----DSYSIFLFTLVMQVPKPRSFRFENTLKTP----F 396
P++ L K+ N + D Y+I P++F ++ + F
Sbjct: 429 PSIY----LELKVKLENEYALHRSIVDHYNI-----------PKTFDSDDLIPPYLDQYF 473
Query: 397 ATSVNYH---VNFSHLNKLLSIMFLLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRI 453
+ + +H + L ++FL R EQ I L+ L L+
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFL----DFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 454 -------SDEKY-GYFGDLGHRLQIHLRQEEQLIIS 481
+D KY + L + EE LI S
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLP---KIEENLICS 562
Score = 36.8 bits (84), Expect = 0.025
Identities = 49/362 (13%), Positives = 105/362 (29%), Gaps = 116/362 (32%)
Query: 4 CRTL----DENEVTD----NAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQ 55
C+ L + VTD + I + L E +L + +++ +
Sbjct: 266 CKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSL--LLKYLDCRPQDLP--- 319
Query: 56 AVRKVCYLSRTCRSIGIAIVSRQFVEMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYV 115
R+V T ++I++ + A + K ++ K T +E+ S+ V
Sbjct: 320 --REVL----TTNPRRLSIIAESIRDG-LATWDNW-----KHVNCDKLTTIIES-SLN-V 365
Query: 116 YQPLE--KLYMLL--------ITTKT-------------SNILEDLETLRLFSRVIPEYC 152
+P E K++ L I T ++ L L +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK------ 419
Query: 153 RTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQV-RTFVEMDSHEEKVYQAVRKREAE 211
E T + S+ + N + R+ V+ Y + +++
Sbjct: 420 ---QPKESTISIPSIYLELK-------VKLENEYALHRSIVDH-------YNIPKTFDSD 462
Query: 212 NKMREKAKE---------LKRQRM-ESAKKFPKMGSGVGVGSNPYF------------GS 249
+ + + LK E F + + +
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV----------FLDFRFLEQKIRHDST 512
Query: 250 SSYSSSPVTPVLESADISIRSSYIA-QTVQREKKFRDI-----RIGRKSLENESYPLRIK 303
+ +S + L + YI + E+ I +I + ++ L ++
Sbjct: 513 AWNASGSILNTL--QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LR 569
Query: 304 IA 305
IA
Sbjct: 570 IA 571
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 5e-11
Identities = 100/588 (17%), Positives = 173/588 (29%), Gaps = 232/588 (39%)
Query: 87 IEGLLAAF----PKLMSSGKQHTFVETDSVRYVYQPLEKLYMLL--ITTKTSNILEDLET 140
E L+ F L+ K F + + E Y+ I + +L++ +T
Sbjct: 58 AE-LVGKFLGYVSSLVEPSKVGQFDQV--LNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 141 -LRLFSRVIPEY---CRTLDE-----------NEVTDNAFSL--IFA--------FDEIV 175
L +I Y V + L IF F+E+
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 176 ALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKREAENKMREKAKELKRQRMESAKKFPKM 235
L Y+ L V ++ E EL R +++ K F +
Sbjct: 175 DL-YQTYHVL--VGDLIK-------------------FSAETLSELIRTTLDAEKVFTQ- 211
Query: 236 GSGVGVGS---NPYFGSSSYSSSPVTPVLESADISIRSSYIAQTVQ----------REKK 282
G+ + NP S++P L S IS + Q +
Sbjct: 212 --GLNILEWLENP-------SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 283 FRDIRIGRKSLENESYPLRIKIAQAILWKP--AVSAKAMKL----GSKSHD--------- 327
R G + ++ + IA+ W+ KA+ + G + ++
Sbjct: 263 LRSYLKG-ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 328 ---------------------------VESFVDQL---KSEGEK------------VISG 345
V+ +V++ G++ V+SG
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG 381
Query: 346 PALS---KVSTL-SSKIPTTNISNMDSYSIFLFTLVMQVP----KPR-SFRFENTLKTPF 396
P S TL +K P S +D ++P K + S RF L P
Sbjct: 382 PPQSLYGLNLTLRKAKAP----SGLDQS---------RIPFSERKLKFSNRF---L--P- 422
Query: 397 ATSVNYHVNFSHLNKLLSIMFL--LHRIHLR-QEEQLIISV-----GRNGGIETFELHGL 448
+ +H SHL S + L + ++ + + I V G +
Sbjct: 423 -VASPFH---SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD----------- 467
Query: 449 LTLRISDEKYGYFGDLGHRL--QIHLRQ----EEQL------IISVGRNGGIETFELHGL 496
LR+ G + R+ I +R E I+ G GG G+
Sbjct: 468 --LRVLS------GSISERIVDCI-IRLPVKWETTTQFKATHILDFGP-GGASG---LGV 514
Query: 497 LTLRISDEKYGR-IKVLLANKDTRGIQMQTHPNVDKELFKSKTEIGLK 543
LT R D G ++V++A + +P+ + G K
Sbjct: 515 LTHRNKD---GTGVRVIVAGT------LDINPD---------DDYGFK 544
Score = 48.9 bits (116), Expect = 5e-06
Identities = 98/567 (17%), Positives = 188/567 (33%), Gaps = 181/567 (31%)
Query: 111 SVRYV---YQPLEKLYMLLITTKTSNILEDLETLR-LFSRVIPEYCRTL-DENEVTDNAF 165
S R + + LE ++LL+ T L+ F++++PE ++E T A
Sbjct: 5 STRPLTLSHGSLE--HVLLVPT---ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA- 58
Query: 166 SLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRK---REAENK-MREK---- 217
L+ F LGY ++ ++ + + V E EN +
Sbjct: 59 ELVGKF-----LGY-----VSS-----LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 218 --AKELKRQRMESAKKFPKMGSGVGVGSNPYFGSSSYSSSPVTPVLESA---DISIRSSY 272
AK L+ K + + Y + + P SA + ++
Sbjct: 104 LAAKLLQENDTTLVKTKELIKN--------YITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 273 IAQTV---Q--REKKFRDIRIGRKSLENESYPLR----IKIAQAILWK-PAVSAKAMKLG 322
+ + Q + F ++R L ++Y + IK + L + + A K+
Sbjct: 156 LV-AIFGGQGNTDDYFEELR----DL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 323 SKSHDVESFVDQLKSEGEK--VISGPALSKVSTLSSKIPTTNISNMDSYSIFLFTLVMQV 380
++ ++ +++ + +K ++S P +S P + + Y + L
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIP----IS-----CPLIGVIQLAHYVVTAKLLGFT- 259
Query: 381 PKPRSFRFENTLKTPFATSVNYHV-------------NF-SHLNKLLSIMFLLHRIHLR- 425
P R + LK AT + + +F + K ++++F I +R
Sbjct: 260 --PGELR--SYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF---IGVRC 310
Query: 426 QE---------EQLIISVGRNGGIETFELHGLLTLR-ISDEKYGYFGDLGHRLQI---HL 472
E L S+ N G+ + +L++ ++ E+ + + HL
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSP----MLSISNLTQEQ------VQDYVNKTNSHL 360
Query: 473 RQEEQLIISVGRNGGIETF-------ELHGL-LTLRISDEKYGRIKVLLANKDTRGIQMQ 524
+Q+ IS+ NG + L+GL LTLR + K + D Q
Sbjct: 361 PAGKQVEISL-VNGA-KNLVVSGPPQSLYGLNLTLR-------KAKA-PSGLD------Q 404
Query: 525 THPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWP--SDNG 582
+ + F + K RF LP++ P S
Sbjct: 405 S-----RIPFSER---------KL--------KFSNRF-------LPVAS---PFHSHLL 432
Query: 583 SGGCDVNIEYELEHEEKELNQVTISIP 609
D+ I +L N I IP
Sbjct: 433 VPASDL-INKDLVKNNVSFNAKDIQIP 458
Score = 43.1 bits (101), Expect = 3e-04
Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 62/249 (24%)
Query: 160 VTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKREAENKMREKAK 219
V +N +L F RE+ + T V+ EK+++ + + R +
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 220 ELKR----QR----MESAKKFPKMGSGVGVGSNPYF-GSS--SYS----SSPVTPVLESA 264
L Q ME A F + S + ++ F G S Y+ + V +ES
Sbjct: 1725 LLSATQFTQPALTLMEKAA-FEDLKSKGLIPADATFAGHSLGEYAALASLADVMS-IESL 1782
Query: 265 DISI---RSSYIAQTVQREKKFRDIRIGRKSLENESYPLRIKIAQAILWKPAVSAKAMKL 321
+ + R + V R++ +GR + ++ A++ +
Sbjct: 1783 -VEVVFYRGMTMQVAVPRDE------LGRSNY-------------GMI---AINPGRVAA 1819
Query: 322 GSKSHDVESFVDQLKSE-GEK-------------VISG--PALSKVSTLSSKIPTTNISN 365
++ V+++ G V +G AL V+ + + I I
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 366 ---MDSYSI 371
S S+
Sbjct: 1880 IELQKSLSL 1888
Score = 34.3 bits (78), Expect = 0.14
Identities = 40/310 (12%), Positives = 90/310 (29%), Gaps = 106/310 (34%)
Query: 248 GSSSYSSSPVT-PVLESADISIRSSY---IAQTVQREKK-----FRDIRIGRKSLENESY 298
G Y +S V AD + +Y I V F + G++ EN Y
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-GKRIREN--Y 1688
Query: 299 PLRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVI-SGPALSKVSTLSSK 357
A++++ V K E ++ LS+
Sbjct: 1689 -------SAMIFETIVDGKL--------KTEKIFKEINEHSTSYTFRSEK----GLLSA- 1728
Query: 358 IPTTN----ISNMDSYSIFLFTLVMQ----VPKPRSF------------------RFENT 391
T ++ M + F ++ +P +F E+
Sbjct: 1729 --TQFTQPALTLM-EKAAF---EDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 392 LKTPFATSVNYHVNFSHLNKLL-----SIMFLLHRIHLRQEEQLIISVGRNGGIETFELH 446
+ +++ ++ + R L + +I++ +F
Sbjct: 1783 V------------------EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 447 GLLTL--RISDEKYGYFGDLGHRLQI--HLRQEEQLIISVGRNGGIETFELHGLLTLRIS 502
L + R+ G ++I + + +Q + + G ++T +T ++
Sbjct: 1825 ALQYVVERVGKRT-------GWLVEIVNYNVENQQYVAA-GDLRALDT------VTNVLN 1870
Query: 503 DEKYGRIKVL 512
K +I ++
Sbjct: 1871 FIKLQKIDII 1880
Score = 32.3 bits (73), Expect = 0.62
Identities = 54/288 (18%), Positives = 92/288 (31%), Gaps = 91/288 (31%)
Query: 366 MDSYSIFLFTL-------VMQVPKPRSFRFENTLKTPFATSVNYHV-NFSHLNKLLSIMF 417
MD+YS TL V+ VP SF + L+ F + F+ ++ +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVP-TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 418 LLHRIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLRQEEQ 477
L+ + F L G ++ + K G F + L + L + E
Sbjct: 60 LVGK---------------------F-L-GYVSSLVEPSKVGQFDQV---LNLCLTEFEN 93
Query: 478 LIISVGRNGGIETFELHGLLT--LRISDEKYGRIKVLLANKDTRGIQMQTHPNVDKE--- 532
+ G + +H L L+ +D + K L+ N M P K
Sbjct: 94 CYLE-GND-------IHALAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSA 144
Query: 533 LFKS----KTEI-------GLKNPSKPF-----------PLNNDIGVLKWRFTSTDESCL 570
LF++ ++ G N F L D+ + E+
Sbjct: 145 LFRAVGEGNAQLVAIFGGQG--NTDDYFEELRDLYQTYHVLVGDL------IKFSAETLS 196
Query: 571 PLSINCWPSDNG---SGGCDVNIEYELEHEEKE-----LNQVTISIPL 610
L D + G ++ +E+ LE+ L + IS PL
Sbjct: 197 ELIRT--TLDAEKVFTQGLNI-LEW-LENPSNTPDKDYLLSIPISCPL 240
Score = 30.0 bits (67), Expect = 2.9
Identities = 43/259 (16%), Positives = 88/259 (33%), Gaps = 82/259 (31%)
Query: 12 VTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAV----RKVCY----- 62
V +N +L F RE+ + T V+ EK+++ + +
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 63 -LSRTCRS-IGIAIVSR-QFVEMTRARIEGLL---AAFPKLMSSGKQHTFVETDSVRYVY 116
LS T + + ++ + F ++ + +GL+ A F +G H S
Sbjct: 1725 LLSATQFTQPALTLMEKAAFEDL---KSKGLIPADATF-----AG--H------S----- 1763
Query: 117 QPL-EKLYMLLITTKTSNIL--EDLETLRL-FSR------VIPEYCRTLDENEVTDNAFS 166
L E Y L + ++++ E + + F R +P DE ++
Sbjct: 1764 --LGE--YAALAS--LADVMSIES--LVEVVFYRGMTMQVAVPR-----DELGRSNYG-- 1808
Query: 167 LIFAFD--EIVALGYRESVNLAQVRTFVEMDSHE--EKV----Y-----QAVR--KREAE 211
+ A + + A +E+ ++ VE V Y Q V A
Sbjct: 1809 -MIAINPGRVAASFSQEA-----LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 212 NKMREKAKELKRQRMESAK 230
+ + +K Q+++ +
Sbjct: 1863 DTVTNVLNFIKLQKIDIIE 1881
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding
site, protein-peptide complex, clathrin adaptor; 2.50A
{Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A
3h85_A 1bxx_A 1hes_A 1h6e_A
Length = 314
Score = 62.2 bits (150), Expect = 1e-10
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 29/164 (17%)
Query: 469 QIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQT--- 525
++ L E + + + G + + + G + ++ K + +K Q +
Sbjct: 51 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTAD 110
Query: 526 -----------------HPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDES 568
H V F S+ I P F L R+ +T +
Sbjct: 111 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFEL--------MRYRTTKDI 162
Query: 569 CLPLSINCWPSDNGSGGCDVNIEYELE-HEEKELNQVTISIPLP 611
LP + + G +V + + ++ + IP P
Sbjct: 163 ILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTP 206
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Rattus
norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Length = 435
Score = 57.7 bits (138), Expect = 6e-09
Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 2/134 (1%)
Query: 71 GIAIVSRQFV-EMTRARIEGLLAAFPKLMSSGKQHTFVETDSVRYVYQPLEKLYMLLITT 129
G ++SR + ++ R ++ + + + +++ +T
Sbjct: 12 GEVLISRVYRDDIGRNAVDAFRVN-VIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTK 70
Query: 130 KTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVR 189
+ N E L V+ Y + E + +N + DEI+ GY ++ ++
Sbjct: 71 QNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALK 130
Query: 190 TFVEMDSHEEKVYQ 203
TF+ + +
Sbjct: 131 TFITQQGIKSQHQT 144
Score = 51.9 bits (123), Expect = 3e-07
Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 29/175 (16%)
Query: 458 YGYFGDLGHRLQIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKD 517
+ G R ++ L E + + + G + + + G + ++ K + +K
Sbjct: 161 WRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKI 220
Query: 518 TRGIQMQT--------------------HPNVDKELFKSKTEIGLKNPSKPFPLNNDIGV 557
Q + H V F S+ I P F L
Sbjct: 221 VIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFEL------ 274
Query: 558 LKWRFTSTDESCLPLSINCWPSDNGSGGCDVNIEYELEH-EEKELNQVTISIPLP 611
R+ +T + LP + + G +V + + ++ + IP P
Sbjct: 275 --MRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTP 327
Score = 31.9 bits (71), Expect = 0.63
Identities = 10/61 (16%), Positives = 23/61 (37%)
Query: 2 EYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEKVYQAVRKVC 61
Y + E + +N + DEI+ GY ++ ++TF+ + + +
Sbjct: 91 AYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQ 150
Query: 62 Y 62
Sbjct: 151 I 151
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin
adaptor AP-2 complex...; dishevelled, frizzled
internalization; 3.50A {Mus musculus}
Length = 385
Score = 53.0 bits (126), Expect = 2e-07
Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 29/210 (13%)
Query: 423 HLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLRQEEQLIISV 482
H + G + + + G G R ++ L E + + +
Sbjct: 76 HTVNKITFSEQCYYVFGDLSGGPRPYSPQPPPYHELEFGGSGGSRNELFLDVLESVNLLM 135
Query: 483 GRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQMQT----------------- 525
G + + + G + ++ K + +K Q +
Sbjct: 136 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDD 195
Query: 526 ---HPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDESCLPLSINCWPSDNG 582
H V F S+ I P F L R+ +T + LP + + G
Sbjct: 196 CTFHQCVRLSKFDSERSISFIPPDGEFEL--------MRYRTTKDIILPFRVIPLVREVG 247
Query: 583 SGGCDVNIEYELE-HEEKELNQVTISIPLP 611
+V + + ++ + IP P
Sbjct: 248 RTKLEVKVVIKSNFKPSLLAQKIEVRIPTP 277
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus} PDB: 2hf6_A
Length = 153
Score = 36.9 bits (85), Expect = 0.005
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 110 DSVRYVYQPLEKLYMLLITTKTSNILEDLETLRLFSRVIPEYCR-TLDENEVTDNAFSLI 168
+ + VY+ LY +I + N L + L + + R +++ + +N L
Sbjct: 63 EGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLF 122
Query: 169 FAFDEIVALGYRESVNLAQVRTFVEM 194
A DEIV G + QV V +
Sbjct: 123 LAVDEIVDGGVILESDPQQVVHRVAL 148
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.77
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 198 EEKVYQAVRK-REAENK-MREKAKELKRQR---MESAKK 231
+E +++RK RE + K ++E K E AKK
Sbjct: 82 QEP--ESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
Score = 30.1 bits (67), Expect = 1.6
Identities = 6/37 (16%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 193 EMDSHEEKVYQAVRKREAENKMREKAKELKRQRMESA 229
+++ ++ + V K + N R K +Q
Sbjct: 119 DLEEWNQRQSEQVEKNKINN--RIADKAFYQQPDADI 153
Score = 29.4 bits (65), Expect = 2.6
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 29/100 (29%)
Query: 201 VYQAVRKREAENKMR----EKAKELKRQRMESAKKFPKMGSGVGVGSNPYFGSSSYSSSP 256
+ QA R + +R E+ K L+ S +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW--------------------- 112
Query: 257 VTPVLESADISIRSSYIAQTVQREKKFRDIRIGRKSLENE 296
E A + Q+ Q EK + RI K+ +
Sbjct: 113 ----REKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 27.8 bits (61), Expect = 8.3
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
Query: 198 EEKVYQAVRKREAENK----MREKA-KELK---RQRMESAKK 231
EE+ + A REKA K+L+ +++ E +K
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Score = 27.8 bits (61), Expect = 8.9
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 193 EMDSHEEKVYQAVR---KREAEN--KMREKAKE-LKRQRMESAKKF 232
E+D+ + + Q R K++ E + + + E K + K F
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 145
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.1
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 14/38 (36%)
Query: 199 EKVYQAVRKREAENKMREKAKELKRQRMESAKKFPKMG 236
EK QA++K +A LK +SA P +
Sbjct: 18 EK--QALKKLQA---------SLKLYADDSA---PALA 41
Score = 29.9 bits (66), Expect = 1.5
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 20/43 (46%)
Query: 280 EKKFRDIRIGRKSLENESYPLRIKIAQAILWK----PAVSAKA 318
EK+ + K L+ +K L+ PA++ KA
Sbjct: 18 EKQ--AL----KKLQA-----SLK-----LYADDSAPALAIKA 44
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 30.7 bits (69), Expect = 1.8
Identities = 29/167 (17%), Positives = 49/167 (29%), Gaps = 19/167 (11%)
Query: 194 MDSHEEKVYQA-VRKREAENKMREKAKELKRQRMESA----KKFPKMGSGVGV---GSNP 245
M SH + + + R + RE+ E+ + E A K K + P
Sbjct: 1 MGSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK-INESYPRIKP 59
Query: 246 YFGSSSYSSSPVTPVLES-ADISIRSSY---IAQTVQREKKFRDIRI--GRKSLENESYP 299
FG + PV +E+ +R + I + E+ L+ Y
Sbjct: 60 VFG----KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYL 115
Query: 300 LRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGP 346
+ L +S S ES L + + G
Sbjct: 116 AGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGD 162
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 29.5 bits (67), Expect = 3.5
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 14/50 (28%)
Query: 192 VEMDSHEEKVYQAVRKREAEN----------KMREKAKELKRQRMESAKK 231
+ + K V E E + +K +E+K E ++
Sbjct: 397 LGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMK----EMSRN 442
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 29.6 bits (66), Expect = 4.3
Identities = 29/167 (17%), Positives = 49/167 (29%), Gaps = 19/167 (11%)
Query: 194 MDSHEEKVYQA-VRKREAENKMREKAKELKRQRMESA----KKFPKMGSGVGV---GSNP 245
M SH + + + R + RE+ E+ + E A K K + P
Sbjct: 1 MGSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK-INESYPRIKP 59
Query: 246 YFGSSSYSSSPVTPVLES-ADISIRSSY---IAQTVQREKKFRDIRI--GRKSLENESYP 299
FG + PV +E+ +R + I + E+ L+ Y
Sbjct: 60 VFG----KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYL 115
Query: 300 LRIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGP 346
+ L +S S ES L + + G
Sbjct: 116 AGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGD 162
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl
aminopeptidase, structura genomics; 2.39A {Cytophaga
hutchinsonii atcc 33406}
Length = 321
Score = 28.5 bits (64), Expect = 5.8
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 4/53 (7%)
Query: 431 IISVGRNGGIETFELHGLLTLRISDEKYGYFGDLGHRLQIHLRQEEQLIISVG 483
+ G E + L+ + + G + E +I G
Sbjct: 95 NNHLHPIGSPSAKEGYRLVGKDSNGDIEGVLKIVD----EEWMLETDRLIDRG 143
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 28.4 bits (63), Expect = 8.6
Identities = 28/166 (16%), Positives = 47/166 (28%), Gaps = 17/166 (10%)
Query: 194 MDSHEEKVYQA-VRKREAENKMREKAKELKRQRMESAKKFPKMGSGVGV------GSNPY 246
M SH + + + R + RE+ E+ + E A K P
Sbjct: 1 MGSHHHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKKINESYPRIKPV 60
Query: 247 FGSSSYSSSPVTPVLES-ADISIRSSY---IAQTVQREKKFRDIRI--GRKSLENESYPL 300
FG + PV +E+ +R + I + E+ L+ Y
Sbjct: 61 FG----KTHPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLA 116
Query: 301 RIKIAQAILWKPAVSAKAMKLGSKSHDVESFVDQLKSEGEKVISGP 346
+ L +S S ES L + + G
Sbjct: 117 GLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGD 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,858,528
Number of extensions: 532121
Number of successful extensions: 1086
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1067
Number of HSP's successfully gapped: 43
Length of query: 611
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 512
Effective length of database: 3,937,614
Effective search space: 2016058368
Effective search space used: 2016058368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.6 bits)