RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12905
(611 letters)
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly
protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 100 bits (251), Expect = 1e-25
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
Query: 71 GIAIVSRQFVEMTRARIEGLLAAFPKLMSS--GKQHTFVETDSVRYVYQPLEKLYMLLIT 128
G +++ +++ + L+ +++ K FVE + + +Y+ LY +
Sbjct: 12 GKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICV 71
Query: 129 TKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQV 188
N L LE + F V+ EY + E ++ N + + DE+ G + +V
Sbjct: 72 DVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKV 131
Query: 189 -RTFVEMDSHE 198
+ + + S E
Sbjct: 132 LKQLLMLQSLE 142
Score = 50.3 bits (120), Expect = 4e-08
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQV-RTFVEMDSHE 50
EY + E ++ N + + DE+ G + +V + + + S E
Sbjct: 92 NEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE 142
>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly
protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 141
Score = 96.5 bits (240), Expect = 3e-24
Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 8/134 (5%)
Query: 71 GIAIVSRQFV-EMTRARIEGLLAAFPKLMSSGKQHT---FVETDSVRYVYQPLEKLYMLL 126
G ++SR + ++ R ++ AF + +Q + + +++
Sbjct: 12 GEVLISRVYRDDIGRNAVD----AFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAA 67
Query: 127 ITTKTSNILEDLETLRLFSRVIPEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLA 186
+T + N E L V+ Y + E + +N + DEI+ GY ++
Sbjct: 68 VTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETG 127
Query: 187 QVRTFVEMDSHEEK 200
++TF+ + +
Sbjct: 128 ALKTFITQQGIKSQ 141
Score = 56.8 bits (137), Expect = 2e-10
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 1 PEYCRTLDENEVTDNAFSLIFAFDEIVALGYRESVNLAQVRTFVEMDSHEEK 52
Y + E + +N + DEI+ GY ++ ++TF+ + +
Sbjct: 90 AAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQ 141
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit
(ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 277
Score = 86.7 bits (214), Expect = 2e-19
Identities = 24/164 (14%), Positives = 50/164 (30%), Gaps = 29/164 (17%)
Query: 469 QIHLRQEEQLIISVGRNGGIETFELHGLLTLRISDEKYGRIKVLLANKDTRGIQ------ 522
++ L E + + + G + + + G + ++ K + +K Q
Sbjct: 14 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTAD 73
Query: 523 --------------MQTHPNVDKELFKSKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDES 568
H V F S+ I P F L R+ +T +
Sbjct: 74 ETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFEL--------MRYRTTKDI 125
Query: 569 CLPLSINCWPSDNGSGGCDVNIEYELEHEEK-ELNQVTISIPLP 611
LP + + G +V + + + ++ + IP P
Sbjct: 126 ILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTP 169
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid
herpesvirus 4 [TaxId: 33708]}
Length = 96
Score = 26.3 bits (58), Expect = 3.5
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 211 ENKMREKAKELKRQRMESAKKFPKMGSGVGVGSNPYFGSSSYSSSPVTPVLESADISIRS 270
+ E KE++R ++E+ K+ S V S+ S +T + I S
Sbjct: 1 DKTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDD---------SILTA--AKRESIIVS 49
Query: 271 SYIAQTVQREKKFRD 285
S A +K
Sbjct: 50 SSRALGAVAMRKIEA 64
>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
{Medicago truncatula [TaxId: 3880]}
Length = 473
Score = 27.8 bits (60), Expect = 4.3
Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 192 VEMDSH--EEKVYQAVRK---REAENKMREKAKELKRQRMESAKK 231
+E+D++ E++ + + + + KM++KA ELK++ E+ +
Sbjct: 411 MEIDTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRP 455
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 27.8 bits (60), Expect = 4.6
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 198 EEKVYQAVRK---REAENKMREKAKELKRQRMESAKK 231
+ + + +E K+RE + L+ +
Sbjct: 393 KSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGP 429
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase
UGT71G1 {Medicago truncatula [TaxId: 3880]}
Length = 461
Score = 27.4 bits (59), Expect = 5.7
Identities = 4/34 (11%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 199 EKVYQAVRK-REAENKMREKAKELKRQRMESAKK 231
E++ + ++ + ++ + +K +E+K +
Sbjct: 411 EEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVVD 444
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 25.8 bits (57), Expect = 6.8
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 172 DEIVALGYRESVNLAQVRTFVEM---DSHEEKVYQAVRKREAENKMREKAKELKRQ 224
E+ +G E A + +EM VY+ + + E K RE+ K R+
Sbjct: 51 YEVAIIGDYERAMAA--KQAIEMLAEGRMHSTVYRHLERIMREIKRRERLKMWARE 104
>d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 167
Score = 25.9 bits (57), Expect = 9.8
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 536 SKTEIGLKNPSKPFPLNNDIGVLKWRFTSTDES 568
+ L + PL D WR DES
Sbjct: 20 QAAQATLDDFETLPPLGQDAASKAWRKNKMDES 52
>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 26.5 bits (58), Expect = 10.0
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 354 LSSKIPTTNISNMDSYSIFLFT-----LVMQVPKPRSFRFENTLKTPFATSVNYHVNFSH 408
++ P + S + FL T ++ V N LK + H
Sbjct: 88 VTRSAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQ-----FIVECH 142
Query: 409 LNKLLSIMFLLHRIHLRQEEQLII 432
N LL ++R+ + E ++
Sbjct: 143 GNTLLPQFLGMYRLTVDGVETYMV 166
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,122,605
Number of extensions: 97761
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 16
Length of query: 611
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 520
Effective length of database: 1,158,166
Effective search space: 602246320
Effective search space used: 602246320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)