BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12906
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7ZW16|RNF41_DANRE E3 ubiquitin-protein ligase NRDP1 OS=Danio rerio GN=rnf41 PE=2 SV=1
Length = 318
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 109/187 (58%), Positives = 146/187 (78%)
Query: 117 LQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVR 176
+ +HNC+K LRS+V +QQ K+ ++E +E + Q+ E KR + +L+ MRA++ +NP ++
Sbjct: 129 MPNHNCIKHLRSVVQQQQTKIADLEKTAAEHKHQLAEQKRDIQLLKAYMRAIRSANPNLQ 188
Query: 177 VLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMH 236
L E++E +++ W NSL ARVTRWGGMISTPD +LQA+IKRSL +SGCP I++ L+
Sbjct: 189 NLEESIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLIDSGCPLSIVNDLIE 248
Query: 237 NSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVM 296
N+HERNWPQGL++LETRQ NRR YENYV KRIP KQAVVV+ C+N H+ EDMI PGLVM
Sbjct: 249 NAHERNWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGEDMILEPGLVM 308
Query: 297 IFAHGIE 303
IFAHG+E
Sbjct: 309 IFAHGVE 315
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDEL 51
L ISCDNA +GCT ++LD SHL +CEHNPKRPV CE+GCG +P DE+
Sbjct: 79 LQISCDNAGFGCTATLRLDQLQSHLKDCEHNPKRPVTCEEGCGLEMPKDEM 129
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 89 MGYEIVRFIGEVDEELICSICSGVFEEPLQDHNC 122
MGY++ RF GEVDE+L+C ICSGV EEP++ +C
Sbjct: 1 MGYDVTRFQGEVDEDLLCPICSGVLEEPVRAPHC 34
>sp|Q5FWL3|RNF41_XENLA E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2
SV=1
Length = 317
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 107/185 (57%), Positives = 145/185 (78%)
Query: 119 DHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVL 178
+HNC+K LRS+V +QQ ++ +E +E + Q++E KR + +L+ MRA++ +NP ++ L
Sbjct: 131 NHNCIKHLRSVVQQQQIRIGELEKTAAESKHQLSEQKRDIQLLKAYMRAIRSANPNLQNL 190
Query: 179 AENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNS 238
E +E +++ W NSL ARVTRWGGMISTPD +LQA+IKRSL ESGCP I+++++ N+
Sbjct: 191 EETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNEIIENA 250
Query: 239 HERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIF 298
HERNWPQGL++LETRQ NRR YENYV KRIP KQAVVV+ C+N H+ EDM+ PGLVMIF
Sbjct: 251 HERNWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGEDMVLEPGLVMIF 310
Query: 299 AHGIE 303
AHG+E
Sbjct: 311 AHGVE 315
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDEL 51
L I+CDNA +GCT V+LD+ SHL++CEHNPKRPV CEQGCG +P DE+
Sbjct: 79 LQITCDNAVFGCTTIVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDEV 129
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 89 MGYEIVRFIGEVDEELICSICSGVFEEPLQDHNC 122
MGY++ RF G+VDE+LIC ICSGV EEP+Q +C
Sbjct: 1 MGYDVSRFQGDVDEDLICPICSGVLEEPVQAPHC 34
>sp|Q8BH75|RNF41_MOUSE E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1
SV=1
Length = 317
Score = 237 bits (605), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 107/187 (57%), Positives = 144/187 (77%)
Query: 117 LQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVR 176
L +HNC+K LRS+V +QQ ++ +E +E + Q+ E KR + +L+ MRA++ NP ++
Sbjct: 129 LPNHNCIKHLRSVVQQQQSRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQ 188
Query: 177 VLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMH 236
L E +E +++ W NSL ARVTRWGGMISTPD +LQA+IKRSL ESGCP I+++L+
Sbjct: 189 NLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIE 248
Query: 237 NSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVM 296
N+HER+WPQGL++LETRQ NRR YENYV KRIP KQAVVV+ C+N H+ +DM+ PGLVM
Sbjct: 249 NAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVM 308
Query: 297 IFAHGIE 303
IFAHG+E
Sbjct: 309 IFAHGVE 315
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDEL 51
L I+CDNA +GC+ V+LD+ SHL++CEHNPKRPV CEQGCG +P DEL
Sbjct: 79 LQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDEL 129
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 89 MGYEIVRFIGEVDEELICSICSGVFEEPLQDHNC 122
MGY++ RF G+VDE+LIC ICSGV EEP+Q +C
Sbjct: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHC 34
>sp|Q5R7T5|RNF41_PONAB E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2
SV=1
Length = 317
Score = 237 bits (605), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 107/187 (57%), Positives = 144/187 (77%)
Query: 117 LQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVR 176
L +HNC+K LRS+V +QQ ++ +E +E + Q+ E KR + +L+ MRA++ NP ++
Sbjct: 129 LPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQ 188
Query: 177 VLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMH 236
L E +E +++ W NSL ARVTRWGGMISTPD +LQA+IKRSL ESGCP I+++L+
Sbjct: 189 NLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIE 248
Query: 237 NSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVM 296
N+HER+WPQGL++LETRQ NRR YENYV KRIP KQAVVV+ C+N H+ +DM+ PGLVM
Sbjct: 249 NAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVM 308
Query: 297 IFAHGIE 303
IFAHG+E
Sbjct: 309 IFAHGVE 315
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDEL 51
L I+CDNA +GC+ V+LD+ SHL++CEHNPKRPV CEQGCG +P DEL
Sbjct: 79 LQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDEL 129
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 89 MGYEIVRFIGEVDEELICSICSGVFEEPLQDHNC 122
MGY++ RF G+VDE+LIC ICSGV EEP+Q +C
Sbjct: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHC 34
>sp|Q9H4P4|RNF41_HUMAN E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1
SV=2
Length = 317
Score = 237 bits (605), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 107/187 (57%), Positives = 144/187 (77%)
Query: 117 LQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVR 176
L +HNC+K LRS+V +QQ ++ +E +E + Q+ E KR + +L+ MRA++ NP ++
Sbjct: 129 LPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQ 188
Query: 177 VLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMH 236
L E +E +++ W NSL ARVTRWGGMISTPD +LQA+IKRSL ESGCP I+++L+
Sbjct: 189 NLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIE 248
Query: 237 NSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVM 296
N+HER+WPQGL++LETRQ NRR YENYV KRIP KQAVVV+ C+N H+ +DM+ PGLVM
Sbjct: 249 NAHERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVM 308
Query: 297 IFAHGIE 303
IFAHG+E
Sbjct: 309 IFAHGVE 315
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDEL 51
L I+CDNA +GC+ V+LD+ SHL++CEHNPKRPV CEQGCG +P DEL
Sbjct: 79 LQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDEL 129
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 28/34 (82%)
Query: 89 MGYEIVRFIGEVDEELICSICSGVFEEPLQDHNC 122
MGY++ RF G+VDE+LIC ICSGV EEP+Q +C
Sbjct: 1 MGYDVTRFQGDVDEDLICPICSGVLEEPVQAPHC 34
>sp|P68907|PZRN3_RAT E3 ubiquitin-protein ligase PDZRN3 OS=Rattus norvegicus GN=Pdzrn3
PE=1 SV=1
Length = 1062
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 89 MGYEIVRFIGEVDEELICSICSGVFEEPL 117
MG+E+ RF GEVD +L C++C V E+PL
Sbjct: 1 MGFELDRFDGEVDPDLKCALCHKVLEDPL 29
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQ-GCGSVI 46
L I C +A+ GC VKL HL C+ P R C GCG ++
Sbjct: 78 LDIKCAHAARGCGRVVKLQDLPEHLERCDFAPAR---CRHAGCGQLL 121
>sp|Q69ZS0|PZRN3_MOUSE E3 ubiquitin-protein ligase PDZRN3 OS=Mus musculus GN=Pdzrn3 PE=1
SV=3
Length = 1063
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 89 MGYEIVRFIGEVDEELICSICSGVFEEPL 117
MG+E+ RF G+VD +L C++C V E+PL
Sbjct: 1 MGFELDRFDGDVDPDLKCALCHKVLEDPL 29
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQ-GCGSVI 46
L I C +A+ GC VKL HL C+ P R C GCG ++
Sbjct: 78 LDIKCAHAARGCGRVVKLQDLPEHLERCDFAPAR---CRHAGCGQLL 121
>sp|Q9UPQ7|PZRN3_HUMAN E3 ubiquitin-protein ligase PDZRN3 OS=Homo sapiens GN=PDZRN3 PE=1
SV=2
Length = 1066
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 89 MGYEIVRFIGEVDEELICSICSGVFEEPL 117
MG+E+ RF G+VD +L C++C V E+PL
Sbjct: 1 MGFELDRFDGDVDPDLKCALCHKVLEDPL 29
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQ-GCGSVIPMDELKYLSNQCE 59
L I C A+ GC VKL HL C+ P R C GCG V+ L E
Sbjct: 78 LDIKCAYATRGCGRVVKLQQLPEHLERCDFAPAR---CRHAGCGQVL-------LRRDVE 127
Query: 60 YHQHDS 65
H D+
Sbjct: 128 AHMRDA 133
>sp|Q6ZMN7|PZRN4_HUMAN PDZ domain-containing RING finger protein 4 OS=Homo sapiens
GN=PDZRN4 PE=1 SV=3
Length = 1036
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 89 MGYEIVRFIGEVDEELICSICSGVFEEPL 117
MG+ + RF VD L C +C V EEPL
Sbjct: 1 MGFALERFAEAVDPALECKLCGQVLEEPL 29
>sp|Q31IE8|SYL_THICR Leucine--tRNA ligase OS=Thiomicrospira crunogena (strain XCL-2)
GN=leuS PE=3 SV=1
Length = 877
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 64 DSHGTD---LELSFCTP-YQSLHTANTAIMGYEIVRFIGEVDEELICSICSGVFEEPLQD 119
D +G D L + F +P Q+L +++A+ G RF+ V ++ + +GV +
Sbjct: 650 DQYGADTLRLYIMFASPPEQTLEWSDSAVEGAH--RFLNRVWRQVQTHVSTGVVAACTSN 707
Query: 120 HNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVLA 179
+ KE +++ K + + +M + T + + +L ++ R S+ G V+
Sbjct: 708 DDLTKEQKALRLKLHTTLQKVTDDMGRRMHFNTAIAATMELLNDISRFKDESDAGRSVMQ 767
Query: 180 ENME 183
E +E
Sbjct: 768 EALE 771
>sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2
SV=1
Length = 349
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 228 GHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPED 287
GH+L Q ++ E N PQ LS ++ ++ +Q+ RI + +A++ L ++LP+
Sbjct: 124 GHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNLPKV 183
Query: 288 MISAPGLVMIFA-HGIE 303
SA G V++ A +G++
Sbjct: 184 KNSAKGKVLMRALYGVK 200
>sp|P81434|SYS_BUCAP Serine--tRNA ligase OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=serS PE=3 SV=2
Length = 427
Score = 32.3 bits (72), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 120 HNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVRVLA 179
HN + L K Q+ N++ +++ ++ELK +L +LQE + +S P
Sbjct: 51 HNTLSALFKKEKKIQELDENLKRTLTKSSKNLSELKIELNLLQEKIHNFSLSIP------ 104
Query: 180 ENMERDDVARWSNSLSRARVTRWG 203
N+ DDV ++S + V WG
Sbjct: 105 -NIPSDDVPEGNSSENNKIVKYWG 127
>sp|O00463|TRAF5_HUMAN TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2
Length = 557
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQC-EQGCGSVIPMDELK-YLSNQC 58
L + C NA GC V L Y HL +C +PVQC + C + +LK +LS C
Sbjct: 106 LYVYCSNAP-GCNAKVILGRYQDHLQQCLF---QPVQCSNEKCREPVLRKDLKEHLSASC 161
Query: 59 EYHQ 62
++ +
Sbjct: 162 QFRK 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,566,667
Number of Sequences: 539616
Number of extensions: 4245989
Number of successful extensions: 12163
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 12092
Number of HSP's gapped (non-prelim): 88
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)