Query psy12906
Match_columns 303
No_of_seqs 176 out of 253
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:46:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fzp_A NRDP1, ring finger prot 100.0 4.5E-73 1.5E-77 475.0 10.1 129 175-303 14-142 (144)
2 2yuc_A TNF receptor-associated 99.2 1E-11 3.4E-16 93.4 2.7 64 19-86 3-76 (76)
3 3hcs_A TNF receptor-associated 99.1 1.1E-10 3.6E-15 99.8 5.8 56 1-62 81-137 (170)
4 2yuc_A TNF receptor-associated 98.4 1.7E-07 5.7E-12 70.1 3.0 58 2-66 16-74 (76)
5 2yre_A F-box only protein 30; 98.0 6.2E-06 2.1E-10 66.6 4.6 54 2-61 37-93 (100)
6 2a25_A Ubiquitin ligase SIAH1; 97.5 2E-05 6.8E-10 69.5 1.6 53 1-56 5-60 (193)
7 2d9k_A FLN29 gene product; zin 97.4 4.2E-05 1.4E-09 56.9 1.5 63 19-108 3-67 (75)
8 2d9k_A FLN29 gene product; zin 97.4 3.6E-05 1.2E-09 57.2 1.0 47 11-61 22-68 (75)
9 3hcs_A TNF receptor-associated 97.3 0.00018 6E-09 61.0 4.9 51 2-60 110-161 (170)
10 2yre_A F-box only protein 30; 97.2 0.00013 4.3E-09 58.9 2.5 56 34-108 36-92 (100)
11 1flk_A TNF receptor associated 96.8 5.2E-05 1.8E-09 68.0 -3.8 102 115-229 12-122 (228)
12 2gkw_A TNF receptor-associated 95.2 0.00096 3.3E-08 58.1 -3.3 80 139-229 4-86 (192)
13 4ghu_A TNF receptor-associated 92.9 0.0056 1.9E-07 53.8 -3.3 79 140-229 5-86 (198)
14 2eod_A TNF receptor-associated 92.7 0.13 4.5E-06 35.6 4.3 48 11-61 15-64 (66)
15 1l8d_A DNA double-strand break 92.1 0.48 1.6E-05 37.3 7.4 54 105-166 49-102 (112)
16 2a25_A Ubiquitin ligase SIAH1; 87.6 0.14 4.9E-06 44.7 0.8 28 34-61 5-35 (193)
17 1ca9_A TRAF2, protein (TNF rec 85.8 0.034 1.2E-06 47.8 -4.1 79 135-229 10-89 (192)
18 3nmd_A CGMP dependent protein 84.8 5.2 0.00018 30.3 8.1 53 119-171 17-69 (72)
19 3hct_A TNF receptor-associated 84.2 0.39 1.3E-05 38.0 1.8 22 10-31 88-109 (118)
20 2eod_A TNF receptor-associated 82.5 1.1 3.9E-05 30.7 3.4 31 26-60 4-34 (66)
21 1flk_A TNF receptor associated 82.1 2.4 8.3E-05 37.4 6.2 16 40-55 17-37 (228)
22 3hct_A TNF receptor-associated 81.6 0.43 1.5E-05 37.7 1.0 27 35-61 82-109 (118)
23 2vy4_A U11/U12 small nuclear r 81.1 0.7 2.4E-05 30.5 1.8 29 34-62 4-32 (37)
24 1ci6_A Transcription factor AT 78.0 7.6 0.00026 28.1 6.7 38 129-166 24-61 (63)
25 3he5_B Synzip2; heterodimeric 76.7 14 0.00048 25.5 7.2 43 123-165 5-47 (52)
26 3m91_A Proteasome-associated A 71.0 17 0.00057 25.6 6.7 38 124-161 12-49 (51)
27 1t2k_D Cyclic-AMP-dependent tr 71.0 15 0.00052 26.0 6.7 32 137-168 24-55 (61)
28 2l7x_A Envelope glycoprotein; 67.8 2.3 7.8E-05 32.2 1.7 43 16-64 16-58 (77)
29 2wt7_A Proto-oncogene protein 67.7 22 0.00076 25.4 7.1 31 137-167 25-55 (63)
30 1a93_B MAX protein, coiled coi 64.7 12 0.0004 24.4 4.5 22 146-167 11-32 (34)
31 3trt_A Vimentin; cytoskeleton, 63.6 31 0.001 25.2 7.4 28 142-169 49-76 (77)
32 3ghg_A Fibrinogen alpha chain; 61.2 2.5 8.6E-05 42.7 1.2 30 139-168 114-143 (562)
33 2jee_A YIIU; FTSZ, septum, coi 60.8 45 0.0015 25.6 7.9 11 185-195 62-72 (81)
34 3a7p_A Autophagy protein 16; c 59.2 40 0.0014 28.8 8.1 46 124-169 64-109 (152)
35 3knv_A TNF receptor-associated 57.4 3 0.0001 34.3 0.8 30 90-119 18-47 (141)
36 3m9b_A Proteasome-associated A 56.0 15 0.00052 33.7 5.3 38 132-169 58-95 (251)
37 3efg_A Protein SLYX homolog; x 56.0 29 0.001 26.1 6.1 44 125-168 11-54 (78)
38 3efg_A Protein SLYX homolog; x 54.4 61 0.0021 24.3 7.7 45 125-169 18-62 (78)
39 1ci6_A Transcription factor AT 54.0 43 0.0015 24.0 6.5 37 133-169 21-57 (63)
40 2yy0_A C-MYC-binding protein; 53.8 28 0.00097 24.4 5.3 29 130-158 21-49 (53)
41 1jnm_A Proto-oncogene C-JUN; B 52.8 19 0.00065 25.6 4.4 33 136-168 23-55 (62)
42 3vhs_A ATPase wrnip1; zinc fin 52.8 6 0.0002 24.5 1.4 26 32-58 3-28 (29)
43 3hnw_A Uncharacterized protein 52.6 53 0.0018 27.1 7.8 27 138-164 92-118 (138)
44 3oja_B Anopheles plasmodium-re 51.8 39 0.0013 32.9 7.9 44 124-167 505-548 (597)
45 1jnm_A Proto-oncogene C-JUN; B 51.7 54 0.0018 23.2 6.7 37 128-164 22-58 (62)
46 2l5g_B Putative uncharacterize 51.3 32 0.0011 23.4 5.0 32 133-164 7-38 (42)
47 1wjv_A Cell growth regulating 51.0 5.9 0.0002 30.4 1.5 41 11-55 15-56 (79)
48 1hjb_A Ccaat/enhancer binding 50.9 41 0.0014 26.0 6.3 34 136-169 37-70 (87)
49 3trt_A Vimentin; cytoskeleton, 49.6 60 0.0021 23.6 6.9 11 123-133 11-21 (77)
50 3hnw_A Uncharacterized protein 49.4 71 0.0024 26.4 8.0 41 127-167 74-114 (138)
51 1wt6_A Myotonin-protein kinase 49.3 77 0.0026 24.3 7.5 51 120-170 13-73 (81)
52 1lwu_C Fibrinogen gamma chain; 49.0 53 0.0018 31.0 8.0 44 125-168 9-52 (323)
53 3ghg_A Fibrinogen alpha chain; 47.7 43 0.0015 33.9 7.4 43 125-167 114-156 (562)
54 1wjv_A Cell growth regulating 46.9 8.6 0.0003 29.5 1.8 25 35-60 10-34 (79)
55 4gjh_A TNF receptor-associated 46.5 0.36 1.2E-05 41.0 -6.7 62 157-229 6-70 (178)
56 3swf_A CGMP-gated cation chann 45.3 96 0.0033 23.4 7.5 43 123-168 9-51 (74)
57 1t2k_D Cyclic-AMP-dependent tr 43.8 81 0.0028 22.1 7.9 39 127-165 21-59 (61)
58 1gmj_A ATPase inhibitor; coile 43.5 54 0.0018 25.3 5.9 12 147-158 56-67 (84)
59 2wt7_A Proto-oncogene protein 43.4 86 0.0029 22.2 7.9 40 127-166 22-61 (63)
60 1g6u_A Domain swapped dimer; d 43.3 74 0.0025 21.5 6.1 38 124-161 3-46 (48)
61 4h22_A Leucine-rich repeat fli 42.6 1.3E+02 0.0043 24.1 8.1 42 127-168 36-77 (103)
62 2zqm_A Prefoldin beta subunit 42.3 83 0.0028 24.1 7.1 41 128-168 70-110 (117)
63 1a93_B MAX protein, coiled coi 40.8 45 0.0015 21.7 4.2 25 126-150 5-29 (34)
64 3oja_B Anopheles plasmodium-re 40.7 77 0.0026 30.7 8.1 14 186-199 573-586 (597)
65 1kd8_B GABH BLL, GCN4 acid bas 39.4 67 0.0023 21.1 4.9 27 130-156 3-29 (36)
66 1gd2_E Transcription factor PA 39.0 68 0.0023 23.7 5.7 32 137-168 31-62 (70)
67 3hhm_B NISH2 P85alpha; PI3KCA, 38.7 76 0.0026 30.3 7.5 29 137-165 221-249 (373)
68 1d00_A Tumor necrosis factor r 37.6 0.35 1.2E-05 40.2 -8.1 42 186-229 24-65 (168)
69 2yy0_A C-MYC-binding protein; 37.5 46 0.0016 23.3 4.3 30 123-152 21-50 (53)
70 1fxk_A Prefoldin; archaeal pro 37.1 83 0.0028 23.7 6.2 38 130-167 67-104 (107)
71 1gu4_A CAAT/enhancer binding p 37.1 1.1E+02 0.0039 22.9 6.8 37 136-172 37-73 (78)
72 1s1c_X RHO-associated, coiled- 36.1 1.2E+02 0.0041 22.6 6.6 60 126-185 4-69 (71)
73 2jfq_A Glutamate racemase; cel 36.0 53 0.0018 29.7 5.7 70 202-286 130-209 (286)
74 1fxk_C Protein (prefoldin); ar 35.5 1.1E+02 0.0039 24.1 7.1 42 127-168 87-128 (133)
75 1gu4_A CAAT/enhancer binding p 35.4 65 0.0022 24.3 5.2 36 130-165 38-73 (78)
76 2dgc_A Protein (GCN4); basic d 35.4 69 0.0023 23.0 5.1 43 123-165 12-60 (63)
77 3q0x_A Centriole protein; cent 35.4 1E+02 0.0034 27.8 7.3 39 123-161 173-211 (228)
78 1uix_A RHO-associated kinase; 35.0 1.4E+02 0.0048 22.3 6.8 25 161-185 44-69 (71)
79 3l4q_C Phosphatidylinositol 3- 34.8 1.9E+02 0.0065 24.9 8.6 44 125-168 100-143 (170)
80 3iv1_A Tumor susceptibility ge 34.7 1.5E+02 0.0051 22.5 8.1 18 124-141 14-31 (78)
81 1zxa_A CGMP-dependent protein 34.5 70 0.0024 23.7 5.0 32 141-172 24-55 (67)
82 3mq9_A Bone marrow stromal ant 34.5 1.2E+02 0.004 28.7 8.1 24 127-150 396-419 (471)
83 1nlw_A MAD protein, MAX dimeri 34.1 55 0.0019 24.5 4.6 30 130-159 49-78 (80)
84 3uhf_A Glutamate racemase; str 33.9 55 0.0019 29.8 5.4 67 202-285 134-208 (274)
85 1hjb_A Ccaat/enhancer binding 33.9 1.6E+02 0.0054 22.6 7.6 39 130-168 38-76 (87)
86 3mhs_C SAGA-associated factor 33.7 15 0.00051 29.3 1.3 24 35-59 70-93 (99)
87 1gmj_A ATPase inhibitor; coile 33.7 1.3E+02 0.0046 23.1 6.7 20 148-167 50-69 (84)
88 1nkp_B MAX protein, MYC proto- 33.2 41 0.0014 25.0 3.7 26 141-166 53-78 (83)
89 3swy_A Cyclic nucleotide-gated 32.7 1.2E+02 0.0041 20.8 6.1 38 123-163 7-44 (46)
90 2i5o_A DNA polymerase ETA; zin 32.7 23 0.00078 23.5 1.9 22 34-56 8-29 (39)
91 3m9b_A Proteasome-associated A 32.6 65 0.0022 29.5 5.6 41 123-163 56-96 (251)
92 4ayb_P DNA-directed RNA polyme 31.7 15 0.0005 25.7 0.9 22 89-110 9-30 (48)
93 2lo3_A SAGA-associated factor 31.4 19 0.00067 24.6 1.4 22 37-59 19-41 (44)
94 1zxa_A CGMP-dependent protein 31.4 72 0.0025 23.6 4.7 43 124-166 14-56 (67)
95 3out_A Glutamate racemase; str 31.0 25 0.00085 31.8 2.6 72 200-286 111-191 (268)
96 3ztg_A E3 ubiquitin-protein li 30.9 14 0.00047 27.2 0.7 24 99-122 9-32 (92)
97 2yur_A Retinoblastoma-binding 30.8 18 0.00063 25.7 1.3 24 99-122 11-34 (74)
98 3m91_A Proteasome-associated A 30.3 1.4E+02 0.0048 20.8 7.2 41 128-168 9-49 (51)
99 3ra3_B P2F; coiled coil domain 30.0 62 0.0021 19.7 3.4 24 145-168 3-26 (28)
100 2gzm_A Glutamate racemase; enz 29.9 44 0.0015 29.8 4.0 70 202-286 111-189 (267)
101 4etp_A Kinesin-like protein KA 29.7 1.2E+02 0.0041 29.0 7.3 45 124-168 6-57 (403)
102 2xv5_A Lamin-A/C; structural p 29.5 1.5E+02 0.005 22.0 6.2 34 126-159 3-36 (74)
103 1nkp_A C-MYC, MYC proto-oncoge 29.2 83 0.0028 23.9 4.9 27 133-159 57-83 (88)
104 2oho_A Glutamate racemase; iso 29.0 62 0.0021 28.9 4.8 69 202-286 120-197 (273)
105 3nmd_A CGMP dependent protein 28.9 1.8E+02 0.0062 21.7 6.9 37 131-167 22-58 (72)
106 2wbs_A Krueppel-like factor 4; 28.9 63 0.0022 22.3 4.0 50 3-56 6-58 (89)
107 3a7p_A Autophagy protein 16; c 28.9 2.2E+02 0.0076 24.1 7.9 47 122-168 69-115 (152)
108 3na7_A HP0958; flagellar bioge 28.6 1.5E+02 0.0053 26.1 7.4 21 272-293 191-211 (256)
109 3vkg_A Dynein heavy chain, cyt 28.6 51 0.0017 40.1 5.2 8 178-185 2082-2089(3245)
110 1kd8_B GABH BLL, GCN4 acid bas 28.5 1.2E+02 0.0041 19.9 4.8 30 136-165 2-31 (36)
111 1deq_A Fibrinogen (alpha chain 28.1 91 0.0031 30.3 6.0 19 40-59 14-32 (390)
112 4h22_A Leucine-rich repeat fli 28.1 2.3E+02 0.0078 22.6 7.6 45 124-168 26-70 (103)
113 1m1j_C Fibrinogen gamma chain; 27.5 1.5E+02 0.0052 28.7 7.6 12 32-43 13-24 (409)
114 2w6b_A RHO guanine nucleotide 27.4 1.7E+02 0.0058 20.9 7.4 24 123-146 12-35 (56)
115 1dip_A Delta-sleep-inducing pe 27.1 43 0.0015 25.4 2.8 28 137-164 17-44 (78)
116 1wgm_A Ubiquitin conjugation f 27.0 10 0.00035 29.2 -0.6 22 99-120 18-39 (98)
117 3mq9_A Bone marrow stromal ant 26.7 1.1E+02 0.0037 28.9 6.4 14 123-136 399-412 (471)
118 1l8d_A DNA double-strand break 26.6 1.7E+02 0.0058 22.3 6.5 39 131-169 6-44 (112)
119 1zuw_A Glutamate racemase 1; ( 26.6 45 0.0015 29.9 3.4 70 202-286 112-190 (272)
120 3ghg_C Fibrinogen gamma chain; 26.6 1.1E+02 0.0038 29.8 6.4 73 81-194 17-89 (411)
121 2vvt_A Glutamate racemase; iso 26.5 75 0.0026 28.7 5.0 70 202-286 132-210 (290)
122 4etp_A Kinesin-like protein KA 26.2 1.9E+02 0.0066 27.5 8.0 35 131-165 6-40 (403)
123 3vmx_A Voltage-gated hydrogen 25.9 1.7E+02 0.0058 20.3 6.6 33 124-156 7-39 (48)
124 1deq_A Fibrinogen (alpha chain 25.9 1.4E+02 0.0046 29.1 6.8 41 125-165 117-157 (390)
125 3ist_A Glutamate racemase; str 25.4 81 0.0028 28.4 5.0 69 202-285 113-190 (269)
126 3qfl_A MLA10; coiled-coil, (CC 25.4 2.2E+02 0.0076 22.0 7.0 27 143-169 20-46 (115)
127 1go4_E MAD1 (mitotic arrest de 25.2 2.5E+02 0.0086 22.1 8.0 28 129-156 13-40 (100)
128 2ysj_A Tripartite motif-contai 25.1 29 0.00098 23.5 1.5 24 96-119 13-36 (63)
129 2djb_A Polycomb group ring fin 24.9 27 0.00093 24.4 1.4 25 98-122 10-34 (72)
130 2oxj_A Hybrid alpha/beta pepti 24.7 1.3E+02 0.0046 19.4 4.4 25 130-154 3-27 (34)
131 2xdj_A Uncharacterized protein 24.5 2.3E+02 0.0079 21.4 7.2 42 127-168 19-60 (83)
132 2v66_B Nuclear distribution pr 24.5 2.7E+02 0.0094 22.3 7.6 64 123-189 5-70 (111)
133 1lwu_C Fibrinogen gamma chain; 24.4 1.6E+02 0.0054 27.7 6.9 40 129-168 6-45 (323)
134 1nkp_B MAX protein, MYC proto- 24.2 1.9E+02 0.0063 21.2 6.0 32 130-161 49-80 (83)
135 3u06_A Protein claret segregat 23.9 2.1E+02 0.0073 27.4 7.9 35 125-159 7-41 (412)
136 4dzn_A Coiled-coil peptide CC- 23.8 1.4E+02 0.0048 18.7 4.8 22 132-153 6-27 (33)
137 3u06_A Protein claret segregat 23.7 2E+02 0.007 27.6 7.7 47 123-169 12-58 (412)
138 2oqq_A Transcription factor HY 23.5 1.8E+02 0.006 19.7 6.4 25 139-163 7-31 (42)
139 2ebt_A Krueppel-like factor 5; 23.3 63 0.0021 22.8 3.1 49 4-56 17-68 (100)
140 2kr4_A Ubiquitin conjugation f 23.2 25 0.00087 26.0 0.9 23 98-120 9-31 (85)
141 3viq_B Mating-type switching p 23.1 96 0.0033 23.9 4.2 24 126-149 6-29 (85)
142 3c3f_A Alpha/beta peptide with 22.9 1.5E+02 0.0052 19.1 4.4 27 130-156 3-29 (34)
143 1kd8_A GABH AIV, GCN4 acid bas 22.7 1.3E+02 0.0046 19.7 4.2 27 130-156 3-29 (36)
144 4aj5_A SKA1, spindle and kinet 22.2 2.8E+02 0.0097 21.6 8.0 44 127-170 36-79 (91)
145 1t3j_A Mitofusin 1; coiled coi 22.1 1.2E+02 0.0041 23.9 4.7 51 117-167 21-72 (96)
146 3sjb_C Golgi to ER traffic pro 22.0 1.7E+02 0.0059 22.9 5.5 25 138-162 52-76 (93)
147 2gkw_A TNF receptor-associated 22.0 1.5E+02 0.005 24.9 5.7 33 131-163 3-35 (192)
148 2pnv_A Small conductance calci 22.0 1.3E+02 0.0046 20.2 4.3 18 139-156 20-37 (43)
149 3tso_C RAB11 family-interactin 21.9 2.4E+02 0.0084 21.2 6.1 36 139-174 18-57 (75)
150 3c3g_A Alpha/beta peptide with 21.8 1.7E+02 0.0057 18.8 4.4 27 130-156 2-28 (33)
151 3ljc_A ATP-dependent protease 21.7 2.6E+02 0.009 24.3 7.5 50 119-169 193-245 (252)
152 2jfz_A Glutamate racemase; cel 21.1 1.1E+02 0.0037 26.9 4.8 69 202-286 110-186 (255)
153 3q8t_A Beclin-1; autophagy, AT 21.0 2.9E+02 0.0098 21.2 7.2 53 124-176 7-59 (96)
154 2zdi_C Prefoldin subunit alpha 21.0 2.6E+02 0.009 22.6 6.9 42 127-168 97-138 (151)
155 1gd2_E Transcription factor PA 20.8 1.6E+02 0.0056 21.6 5.0 31 134-164 35-65 (70)
156 2zqm_A Prefoldin beta subunit 20.7 2.8E+02 0.0095 21.0 7.5 44 129-172 7-50 (117)
157 2dgc_A Protein (GCN4); basic d 20.5 1.5E+02 0.0051 21.2 4.6 27 130-156 32-58 (63)
158 3m48_A General control protein 20.4 1.2E+02 0.0041 19.5 3.5 16 132-147 4-19 (33)
159 1fxk_C Protein (prefoldin); ar 20.1 3.2E+02 0.011 21.4 7.4 42 123-164 90-131 (133)
160 1fxk_A Prefoldin; archaeal pro 20.1 2.8E+02 0.0094 20.7 7.2 43 130-172 3-45 (107)
161 3lay_A Zinc resistance-associa 20.1 2.8E+02 0.0094 23.7 7.0 32 139-170 75-106 (175)
No 1
>2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein ubiquitination, structural genomics, STRU genomics consortium, SGC, ligase; 1.87A {Homo sapiens} SCOP: d.345.1.1 PDB: 2gwf_B 2ogb_A
Probab=100.00 E-value=4.5e-73 Score=475.01 Aligned_cols=129 Identities=64% Similarity=1.108 Sum_probs=126.9
Q ss_pred hhhhhhhhchHHHHHHHhhcccccccccCccccCchHHHHHHHHHHHHhcCCchHHHHHHHhhccccCCCcccccHHHHH
Q psy12906 175 VRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQ 254 (303)
Q Consensus 175 ~~~~~~~~~~~~I~~ws~kL~~ar~~~~g~~iStP~~~~~~~~~~~l~~s~cp~~~~~~~~~~~~e~~wp~~l~~l~~r~ 254 (303)
+-++++++++++|++|+++|+.|+|++|||||||||++||+|||++|++||||+||+|+|||||||||||+||+||||||
T Consensus 14 ~~~igdqler~~lm~W~~~Lp~ArVt~WG~mISTPD~~lq~mir~~L~~sGCP~hiln~l~e~cHE~rWP~GLstLetRq 93 (144)
T 2fzp_A 14 LVPRGSTIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHERSWPQGLATLETRQ 93 (144)
T ss_dssp CSCTTSHHHHHHHHHHHHHSEEEEECCGGGEESSCCHHHHHHHHHHHHHTTCCHHHHHHHHHTTSGGGSCTTTSSHHHHH
T ss_pred hhhHHHHHhHHHHHHHHhcCchhhcccccccccCccHHHHHHHHHHHHhcCCCHHHHHHHHHHhhhccCcchhhHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhhhcCCCCceEEEEecCCCCCCCCCccCCcEEEEeecCCC
Q psy12906 255 NNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHGIE 303 (303)
Q Consensus 255 ~n~~~~~~~v~~~~~~k~~~~~~~~~n~h~~~~~~~~~g~~~if~~g~~ 303 (303)
+|||+|+||||||||||||||||+|||+||||||+++||||||||||||
T Consensus 94 ~Nr~~~~~yV~r~iPGKq~Vvvl~cDN~HMpenm~~~~GlvMIFa~GVe 142 (144)
T 2fzp_A 94 MNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHGVE 142 (144)
T ss_dssp HTTTGGGGCCEEECTTSSEEEEEGGGCTTSCTTTCCSSEEEEEESSCEE
T ss_pred HHHHHHHHHHHhhCCCCceEEEEecccCcCCcccccCCCEEEEEecccc
Confidence 9999999999999999999999999999999999999999999999996
No 2
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=99.16 E-value=1e-11 Score=93.38 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=55.5
Q ss_pred ccHHhHhhcCCCCCCCccccCCCCCCccccchHHHHHh-hCcccccCCCCCcc---------ccccCCCcccccCCCc
Q psy12906 19 DSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLSN-QCEYHQHDSHGTDL---------ELSFCTPYQSLHTANT 86 (303)
Q Consensus 19 ~~l~~Hl~~C~y~Pk~~v~Cp~gCg~~v~R~eL~~Hl~-~C~~r~~~~~~~~~---------~~~~C~~~~~~~Cpng 86 (303)
.+|+.|+..|+|. +|.||++|+..|+|++|++|+. .|++|.+.+.++.. |.+.|+.+ ++.||+|
T Consensus 3 ~~l~~H~~~C~~~---~v~C~~~C~~~v~r~~l~~H~~~~C~~r~v~C~~C~~~~~~~~l~~H~~~Cp~~-~v~C~~g 76 (76)
T 2yuc_A 3 SGSSGHLNTCSFN---VIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQE-SSGPSSG 76 (76)
T ss_dssp CSCSCCCCCCCCS---CCBCTTCCSCBCCSSSSTTTTTTSCTTSCCCCSSSCCCCCHHHHHHTTTSCTTS-SCCCSCC
T ss_pred hHHHHHHHHCCCc---ccCCCccccHHhhHhHHHhhCHhhCCCcceECCCCCCccCHHHHHHHHhHCCCC-ccCCCCC
Confidence 4688999999999 9999989999999999999997 89999888877655 56778888 8888875
No 3
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.07 E-value=1.1e-10 Score=99.80 Aligned_cols=56 Identities=23% Similarity=0.550 Sum_probs=52.6
Q ss_pred CeEEccCCCCCCceeEecccHHhHhhcCCCCCCCccccCCCCCCccccchHHHHH-hhCcccc
Q psy12906 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLS-NQCEYHQ 62 (303)
Q Consensus 1 L~V~C~N~~~GC~~~~~L~~l~~Hl~~C~y~Pk~~v~Cp~gCg~~v~R~eL~~Hl-~~C~~r~ 62 (303)
|.|+|+|. ||+|++.+.+++.|+.+|+|. ++.|| +|+..++|++|++|+ ..|++|.
T Consensus 81 l~v~C~n~--GC~~~~~~~~l~~H~~~C~~~---~v~C~-~C~~~~~r~~l~~H~~~~C~~r~ 137 (170)
T 3hcs_A 81 LMVKCPNE--GCLHKMELRHLEDHQAHCEFA---LMDCP-QCQRPFQKFHINIHILKDCPRRQ 137 (170)
T ss_dssp SEEECCST--TCCCEEEGGGHHHHHTTCTTS---EEECT-TTCCEEEGGGHHHHHHHTCTTCE
T ss_pred cccCCCCC--CCCceecHhHHHHHHhcCCce---eeECC-CCChHHHHHHHHHHhhhhCCCCC
Confidence 67999984 999999999999999999999 99998 899999999999999 5999993
No 4
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=98.36 E-value=1.7e-07 Score=70.14 Aligned_cols=58 Identities=22% Similarity=0.564 Sum_probs=51.9
Q ss_pred eEEccCCCCCCceeEecccHHhHhh-cCCCCCCCccccCCCCCCccccchHHHHHhhCcccccCCC
Q psy12906 2 VISCDNASYGCTVAVKLDSYSSHLT-ECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSH 66 (303)
Q Consensus 2 ~V~C~N~~~GC~~~~~L~~l~~Hl~-~C~y~Pk~~v~Cp~gCg~~v~R~eL~~Hl~~C~~r~~~~~ 66 (303)
.|.|+| ||...+.+.+++.|+. +|++. ++.|+. |+..+.+.+|++|...|+...+.++
T Consensus 16 ~v~C~~---~C~~~v~r~~l~~H~~~~C~~r---~v~C~~-C~~~~~~~~l~~H~~~Cp~~~v~C~ 74 (76)
T 2yuc_A 16 VIPCPN---RCPMKLSRRDLPAHLQHDCPKR---RLKCEF-CGCDFSGEAYESHEGMCPQESSGPS 74 (76)
T ss_dssp CCBCTT---CCSCBCCSSSSTTTTTTSCTTS---CCCCSS-SCCCCCHHHHHHTTTSCTTSSCCCS
T ss_pred ccCCCc---cccHHhhHhHHHhhCHhhCCCc---ceECCC-CCCccCHHHHHHHHhHCCCCccCCC
Confidence 477876 8999999999999996 99999 999975 9999999999999999999876543
No 5
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=6.2e-06 Score=66.56 Aligned_cols=54 Identities=19% Similarity=0.351 Sum_probs=49.4
Q ss_pred eEEccCCCCCCceeEecccHHhHhhcCCCCCCCccccC---CCCCCccccchHHHHHhhCccc
Q psy12906 2 VISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCE---QGCGSVIPMDELKYLSNQCEYH 61 (303)
Q Consensus 2 ~V~C~N~~~GC~~~~~L~~l~~Hl~~C~y~Pk~~v~Cp---~gCg~~v~R~eL~~Hl~~C~~r 61 (303)
.|.|+| .|..++.+..+++|+..|+.. .++|+ .||..++.|.+|.+|++.||.-
T Consensus 37 ~i~CP~---~Cga~i~rckL~EH~~~CP~a---~v~C~~~~yGCp~~~~R~~L~~He~~CPas 93 (100)
T 2yre_A 37 LIGCPL---VCGAVFHSCKADEHRLLCPFE---RVPCLNSDFGCPFTMARNKVAEHLEMCPAS 93 (100)
T ss_dssp EEECTT---CCSCEEEHHHHHHHHHHCSSS---EEECTTTTTTCCCEEESSTHHHHHHTCGGG
T ss_pred eeeCCc---ccCCeeehhhHHHHHhhcccc---cccccccCcCCceeecHHHHHHHHhhCCce
Confidence 467775 798999999999999999999 99998 7999999999999999999986
No 6
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=97.55 E-value=2e-05 Score=69.50 Aligned_cols=53 Identities=25% Similarity=0.496 Sum_probs=18.9
Q ss_pred CeEEccCCCCCCceeEecccHHhHhhcCCCCCCCccccC-CC--CCCccccchHHHHHh
Q psy12906 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCE-QG--CGSVIPMDELKYLSN 56 (303)
Q Consensus 1 L~V~C~N~~~GC~~~~~L~~l~~Hl~~C~y~Pk~~v~Cp-~g--Cg~~v~R~eL~~Hl~ 56 (303)
+.+-|+|+..||+++++..+...|.++|+|. |..|| .| |+..-...+|..|+.
T Consensus 5 ~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~---p~~Cp~~g~~C~~~G~~~~l~~H~~ 60 (193)
T 2a25_A 5 VLFPCKYASSGCEITLPHTEKADHEELCEFR---PYSCPCPGASCKWQGSLDAVMPHLM 60 (193)
T ss_dssp ----------------------------------CEECCCC--CCCCEECSTTHHHHHH
T ss_pred eEecCCCCCCCCCcccccccccchhhcCCCC---CccCCCCCCCCcCCCCHHHHHHHHH
Confidence 4688999999999999999999999999999 99999 45 999899999999995
No 7
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.40 E-value=4.2e-05 Score=56.85 Aligned_cols=63 Identities=21% Similarity=0.390 Sum_probs=49.2
Q ss_pred ccHHhHh-hcCCCCCCCccccCCCCCCccccchHHHHHhhCcccccCCCCCccccccCCCcccccCCCccccCceeeeee
Q psy12906 19 DSYSSHL-TECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFI 97 (303)
Q Consensus 19 ~~l~~Hl-~~C~y~Pk~~v~Cp~gCg~~v~R~eL~~Hl~~C~~r~~~~~~~~~~~~~C~~~~~~~Cpng~~CG~~I~R~~ 97 (303)
.+|+.|+ ..|++. ++.|+ .|+..+.+.+|..|...|+.+ +..|+. ||..+. +
T Consensus 3 ~~L~~H~~~~c~~r---~~~C~-~C~~~~~~~~L~~H~~~c~~~------------------~~~C~~---C~~~~~--~ 55 (75)
T 2d9k_A 3 SGSSGHEETECPLR---LAVCQ-HCDLELSILKLKEHEDYCGAR------------------TELCGN---CGRNVL--V 55 (75)
T ss_dssp CCCSCCCCCCCCCC---CEECS-SSCCEECHHHHHHHHHHHHHC------------------EEECSS---SCCEEE--T
T ss_pred hHHHhhCcccCCCc---ccCCc-ccChHhhHHHHHHHHhHcCCC------------------ceEccc---CCCcCc--H
Confidence 5678888 489998 99996 599999999999999888887 667775 887654 4
Q ss_pred cccccccc-ccc
Q psy12906 98 GEVDEELI-CSI 108 (303)
Q Consensus 98 g~vDe~i~-C~~ 108 (303)
.+++.|.. |+.
T Consensus 56 ~~l~~H~~~c~~ 67 (75)
T 2d9k_A 56 KDLKTHPEVCGR 67 (75)
T ss_dssp TGGGTHHHHBTT
T ss_pred HHHHHHHHHccC
Confidence 67777764 654
No 8
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.39 E-value=3.6e-05 Score=57.20 Aligned_cols=47 Identities=19% Similarity=0.465 Sum_probs=42.7
Q ss_pred CCceeEecccHHhHhhcCCCCCCCccccCCCCCCccccchHHHHHhhCccc
Q psy12906 11 GCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYH 61 (303)
Q Consensus 11 GC~~~~~L~~l~~Hl~~C~y~Pk~~v~Cp~gCg~~v~R~eL~~Hl~~C~~r 61 (303)
.|...+...+|+.|...|+.. ++.|+. |+..+.|.+|..|+..|+--
T Consensus 22 ~C~~~~~~~~L~~H~~~c~~~---~~~C~~-C~~~~~~~~l~~H~~~c~~~ 68 (75)
T 2d9k_A 22 HCDLELSILKLKEHEDYCGAR---TELCGN-CGRNVLVKDLKTHPEVCGRE 68 (75)
T ss_dssp SSCCEECHHHHHHHHHHHHHC---EEECSS-SCCEEETTGGGTHHHHBTTB
T ss_pred ccChHhhHHHHHHHHhHcCCC---ceEccc-CCCcCcHHHHHHHHHHccCC
Confidence 488999999999999889888 999975 99999999999999988764
No 9
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.35 E-value=0.00018 Score=61.04 Aligned_cols=51 Identities=16% Similarity=0.591 Sum_probs=45.6
Q ss_pred eEEccCCCCCCceeEecccHHhHh-hcCCCCCCCccccCCCCCCccccchHHHHHhhCcc
Q psy12906 2 VISCDNASYGCTVAVKLDSYSSHL-TECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEY 60 (303)
Q Consensus 2 ~V~C~N~~~GC~~~~~L~~l~~Hl-~~C~y~Pk~~v~Cp~gCg~~v~R~eL~~Hl~~C~~ 60 (303)
.|.|+ ||++.+.+.++..|+ .+|++. .+.|+ .|+..+++.+|++|.+.|.-
T Consensus 110 ~v~C~----~C~~~~~r~~l~~H~~~~C~~r---~~~C~-~C~~~~~~~~l~~H~~~~~~ 161 (170)
T 3hcs_A 110 LMDCP----QCQRPFQKFHINIHILKDCPRR---QVSCD-NCAASMAFEDKEIHDQNCPL 161 (170)
T ss_dssp EEECT----TTCCEEEGGGHHHHHHHTCTTC---EEECT-TTCCEEEGGGHHHHHTTCCC
T ss_pred eeECC----CCChHHHHHHHHHHhhhhCCCC---CeECC-CCCCccCHHHHHhHHHhCcC
Confidence 36775 999999999999999 799999 99997 79999999999999986643
No 10
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.22 E-value=0.00013 Score=58.92 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=44.5
Q ss_pred CccccCCCCCCccccchHHHHHhhCcccccCCCCCccccccCCCcccccCCCccccCceeeeeecccccccc-ccc
Q psy12906 34 RPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANTAIMGYEIVRFIGEVDEELI-CSI 108 (303)
Q Consensus 34 ~~v~Cp~gCg~~v~R~eL~~Hl~~C~~r~~~~~~~~~~~~~C~~~~~~~Cpng~~CG~~I~R~~g~vDe~i~-C~~ 108 (303)
.+|.||+.|+..+.|.+|++|+..||.- .+.|++.. -|..+.-.+..+.+|+. ||.
T Consensus 36 ~~i~CP~~Cga~i~rckL~EH~~~CP~a------------------~v~C~~~~-yGCp~~~~R~~L~~He~~CPa 92 (100)
T 2yre_A 36 DLIGCPLVCGAVFHSCKADEHRLLCPFE------------------RVPCLNSD-FGCPFTMARNKVAEHLEMCPA 92 (100)
T ss_dssp CEEECTTCCSCEEEHHHHHHHHHHCSSS------------------EEECTTTT-TTCCCEEESSTHHHHHHTCGG
T ss_pred eeeeCCcccCCeeehhhHHHHHhhcccc------------------cccccccC-cCCceeecHHHHHHHHhhCCc
Confidence 3788999999999999999999999987 56677632 45555566778888877 887
No 11
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=96.80 E-value=5.2e-05 Score=68.00 Aligned_cols=102 Identities=6% Similarity=0.040 Sum_probs=62.4
Q ss_pred CCCCCCChHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--Cc-hhhhhhhhchH
Q psy12906 115 EPLQDHNCVKEL------RSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSN--PG-VRVLAENMERD 185 (303)
Q Consensus 115 ~~~q~~nC~~~L------R~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~--~~-~~~~~~~~~~~ 185 (303)
||+...+|.... |..+++|..+ .++..+..+...++.++.+|+.|+..+..+.... .. +|+
T Consensus 12 c~~~~~gc~~~~~~~~~~r~~~~~h~~~--~~~~h~~~~~~~i~~~~~~i~~~~~~l~~l~~~~~~g~~~wk-------- 81 (228)
T 1flk_A 12 SSVESLQNRVTELESVDKSAGQVARNTG--LLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWK-------- 81 (228)
T ss_dssp ------------CTTTTTTTTTHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEE--------
T ss_pred ccccccCceeeccccccchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCcEEEEE--------
Confidence 333455555443 4445555543 3455566666667777777777777777765543 22 666
Q ss_pred HHHHHHhhcccccccccCccccCchHHHHHHHHHHHHhcCCchH
Q psy12906 186 DVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGH 229 (303)
Q Consensus 186 ~I~~ws~kL~~ar~~~~g~~iStP~~~~~~~~~~~l~~s~cp~~ 229 (303)
|.+||+.+..++.++...+.|+| |+....||+++....|+.
T Consensus 82 -I~nfS~~~~~~~~g~~~~i~S~~--F~vg~~Gy~w~i~~yPnG 122 (228)
T 1flk_A 82 -IRDYKRRKQEAVMGKTLSLYSQP--FYTGYFGYKMCARVYLNG 122 (228)
T ss_dssp -EECHHHHHHHHHTTSCCCEECCC--EESSTTSCEECEEEETTC
T ss_pred -ECCHHHHHHHhhcCCCeeEECce--EEeCCCCcEEEEEEEcCC
Confidence 99999988777755444677888 888878899988888875
No 12
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=95.24 E-value=0.00096 Score=58.06 Aligned_cols=80 Identities=8% Similarity=0.094 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--C-chhhhhhhhchHHHHHHHhhcccccccccCccccCchHHHHH
Q psy12906 139 NMETEMSEQRFQMTELKRQLTVLQELMRAMKVSN--P-GVRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQA 215 (303)
Q Consensus 139 ~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~--~-~~~~~~~~~~~~~I~~ws~kL~~ar~~~~g~~iStP~~~~~~ 215 (303)
.|+..+.++..+++.++.+|..|+..+..+...+ . -+|+ |.+||+.+..++.++...+.|+| |+..
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~---------I~~fS~~~~~~~~g~~~~i~S~~--F~vg 72 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWK---------IRDYKRRKQEAVMGKTLSLYSQP--FYTG 72 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSEEEEE---------EECHHHHHHHHHHTSCSCEECCC--EESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcEEEEE---------ECCHHHHHHHhhcCCCceEEccc--EEEC
Confidence 4555566666666666666777776666665433 2 2676 99999988788765444577888 7777
Q ss_pred HHHHHHHhcCCchH
Q psy12906 216 MIKRSLAESGCPGH 229 (303)
Q Consensus 216 ~~~~~l~~s~cp~~ 229 (303)
..||+++....|+.
T Consensus 73 ~~Gykw~i~~yPnG 86 (192)
T 2gkw_A 73 YFGYKMCARVYLNG 86 (192)
T ss_dssp TTSCEEEEEEETTC
T ss_pred CCCcEEEEEEEeCC
Confidence 77899888888875
No 13
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=92.94 E-value=0.0056 Score=53.79 Aligned_cols=79 Identities=8% Similarity=0.106 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CchhhhhhhhchHHHHHHHhhcccccccccCccccCchHHHHHH
Q psy12906 140 METEMSEQRFQMTELKRQLTVLQELMRAMKVSN---PGVRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAM 216 (303)
Q Consensus 140 l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~---~~~~~~~~~~~~~~I~~ws~kL~~ar~~~~g~~iStP~~~~~~~ 216 (303)
|++.+++++.++.....+|+.|+..++.+.... .-+|+ |.+||+....|+.++-..+.|+| |+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~w~---------I~nfS~~~~~~~~~~g~~i~S~~--F~vg~ 73 (198)
T 4ghu_A 5 LESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWK---------IRDYKRRKQEAVMGKTLSLYSQP--FYTGY 73 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEE---------ECCHHHHHHHHHTTSSCCEECCC--EESST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccEEEEE---------ECCHHHHHhhhccCCCcEEECCC--eEECC
Confidence 444555666666666677777777777765433 22677 99999988877665444566888 77666
Q ss_pred HHHHHHhcCCchH
Q psy12906 217 IKRSLAESGCPGH 229 (303)
Q Consensus 217 ~~~~l~~s~cp~~ 229 (303)
.||+.+....|+.
T Consensus 74 ~Gy~W~i~~yPnG 86 (198)
T 4ghu_A 74 FGYKMCARVYLNG 86 (198)
T ss_dssp TSCEEEEEEETTC
T ss_pred CCcEEEEEEEeCC
Confidence 6888777777765
No 14
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.71 E-value=0.13 Score=35.64 Aligned_cols=48 Identities=27% Similarity=0.542 Sum_probs=36.2
Q ss_pred CCceeEecccHHhHhhcCCCCCCCccccCCCCCCc-cccchHHHHHh-hCccc
Q psy12906 11 GCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSV-IPMDELKYLSN-QCEYH 61 (303)
Q Consensus 11 GC~~~~~L~~l~~Hl~~C~y~Pk~~v~Cp~gCg~~-v~R~eL~~Hl~-~C~~r 61 (303)
-|.......+|..|+..+.-. +..|++.|+.. ..+.+|..|+. .|+.+
T Consensus 15 ~C~k~f~~~~L~~H~~~~~~~---p~~C~~~C~k~f~~~~~L~~H~~~hc~~~ 64 (66)
T 2eod_A 15 YCTKEFVFDTIQSHQYQCPRL---PVACPNQCGVGTVAREDLPGHLKDSCNTA 64 (66)
T ss_dssp SSCCEEEHHHHHHHHHHCSSS---EEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred ccCCccCHHHHHHHHHHcCCc---CccCCcccCcccccHHHHHHHHHhhcccC
Confidence 366777788899999665555 89996479976 55669999996 48776
No 15
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=92.13 E-value=0.48 Score=37.32 Aligned_cols=54 Identities=15% Similarity=0.350 Sum_probs=37.1
Q ss_pred ccccccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 105 ICSICSGVFEEPLQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMR 166 (303)
Q Consensus 105 ~C~~c~~~Le~~~q~~nC~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~ 166 (303)
.||.|++.+.. ..-...++....++.++...+..+..++..+++++..|...+.
T Consensus 49 ~CPvCgs~l~~--------~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 49 KCPVCGRELTD--------EHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp ECTTTCCEECH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889877762 2223456666667777777777777777777777777777665
No 16
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=87.58 E-value=0.14 Score=44.72 Aligned_cols=28 Identities=25% Similarity=0.593 Sum_probs=0.0
Q ss_pred CccccC---CCCCCccccchHHHHHhhCccc
Q psy12906 34 RPVQCE---QGCGSVIPMDELKYLSNQCEYH 61 (303)
Q Consensus 34 ~~v~Cp---~gCg~~v~R~eL~~Hl~~C~~r 61 (303)
..++|+ .||...++-.++.+|...|+|+
T Consensus 5 ~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~ 35 (193)
T 2a25_A 5 VLFPCKYASSGCEITLPHTEKADHEELCEFR 35 (193)
T ss_dssp -------------------------------
T ss_pred eEecCCCCCCCCCcccccccccchhhcCCCC
Confidence 367887 5999999999999999999998
No 17
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=85.76 E-value=0.034 Score=47.82 Aligned_cols=79 Identities=9% Similarity=0.130 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-chhhhhhhhchHHHHHHHhhcccccccccCccccCchHHH
Q psy12906 135 QKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNP-GVRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVML 213 (303)
Q Consensus 135 ~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~~-~~~~~~~~~~~~~I~~ws~kL~~ar~~~~g~~iStP~~~~ 213 (303)
.+..+|++.+..+..++.+++.+++.++. ..... -+|+ |.+||+....++.|....+.|+| |+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~w~---------I~nfS~~~~~~~~g~~~~i~S~~--F~ 73 (192)
T 1ca9_A 10 SKVQQLERSIGLKDLAMADLEQKVLEMEA-----STYDGVFIWK---------ISDFARKRQEAVAGRIPAIFSPA--FY 73 (192)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCSSSEEEEE---------EESHHHHHHHHHTTSSCCEECCC--EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CccCceEEEE---------ECCHHHHHHHhhcCCCceEECce--EE
Confidence 33444555555555555555554443321 11222 2666 99999877777655433466888 66
Q ss_pred HHHHHHHHHhcCCchH
Q psy12906 214 QAMIKRSLAESGCPGH 229 (303)
Q Consensus 214 ~~~~~~~l~~s~cp~~ 229 (303)
.+..||..+....|+.
T Consensus 74 v~~gG~~W~i~~yP~G 89 (192)
T 1ca9_A 74 TSRYGYKMCLRIYLNG 89 (192)
T ss_dssp SSTTSCEEEEEEETTC
T ss_pred eCCCCeEEEEEEEeCC
Confidence 6445777777777764
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.84 E-value=5.2 Score=30.25 Aligned_cols=53 Identities=8% Similarity=0.258 Sum_probs=44.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy12906 119 DHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVS 171 (303)
Q Consensus 119 ~~nC~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~ 171 (303)
.++=+.+|+..++...+++...+..+++++.++++...+++.|+..+-.+++.
T Consensus 17 ~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 17 GRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56668999999888888888888899999999999999999999888776553
No 19
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=84.19 E-value=0.39 Score=37.96 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=14.1
Q ss_pred CCCceeEecccHHhHhhcCCCC
Q psy12906 10 YGCTVAVKLDSYSSHLTECEHN 31 (303)
Q Consensus 10 ~GC~~~~~L~~l~~Hl~~C~y~ 31 (303)
.||+|++.+.+++.|+.+|.+.
T Consensus 88 ~gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 88 EGCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp TTCCCEEEGGGSGGGTSSSCC-
T ss_pred CCCCCEEeeHHHHHHHHHchhh
Confidence 4666666666666666666664
No 20
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.55 E-value=1.1 Score=30.73 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=24.6
Q ss_pred hcCCCCCCCccccCCCCCCccccchHHHHHhhCcc
Q psy12906 26 TECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEY 60 (303)
Q Consensus 26 ~~C~y~Pk~~v~Cp~gCg~~v~R~eL~~Hl~~C~~ 60 (303)
.+|++. +..|+ -|+..+.+..|..|+..+.-
T Consensus 4 ~~C~~~---~~~C~-~C~k~f~~~~L~~H~~~~~~ 34 (66)
T 2eod_A 4 GSSGKR---TQPCT-YCTKEFVFDTIQSHQYQCPR 34 (66)
T ss_dssp SCCCCC---EEECS-SSCCEEEHHHHHHHHHHCSS
T ss_pred ccCCCC---Ceecc-ccCCccCHHHHHHHHHHcCC
Confidence 368777 99995 59988889999999965443
No 21
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=82.10 E-value=2.4 Score=37.42 Aligned_cols=16 Identities=0% Similarity=-0.392 Sum_probs=7.0
Q ss_pred CCCCCcc-----ccchHHHHH
Q psy12906 40 QGCGSVI-----PMDELKYLS 55 (303)
Q Consensus 40 ~gCg~~v-----~R~eL~~Hl 55 (303)
.||...+ +|.+|++|+
T Consensus 17 ~gc~~~~~~~~~~r~~~~~h~ 37 (228)
T 1flk_A 17 LQNRVTELESVDKSAGQVARN 37 (228)
T ss_dssp -------CTTTTTTTTTHHHH
T ss_pred cCceeeccccccchhHHHHHH
Confidence 4565555 778888776
No 22
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=81.56 E-value=0.43 Score=37.72 Aligned_cols=27 Identities=26% Similarity=0.653 Sum_probs=23.7
Q ss_pred ccccC-CCCCCccccchHHHHHhhCccc
Q psy12906 35 PVQCE-QGCGSVIPMDELKYLSNQCEYH 61 (303)
Q Consensus 35 ~v~Cp-~gCg~~v~R~eL~~Hl~~C~~r 61 (303)
.|.|| .||+..+...++.+|+.+|.+-
T Consensus 82 ~v~C~n~gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 82 MVKCPNEGCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp EEECSSTTCCCEEEGGGSGGGTSSSCC-
T ss_pred eeECCCCCCCCEEeeHHHHHHHHHchhh
Confidence 57898 7999999999999999988875
No 23
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=81.10 E-value=0.7 Score=30.45 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=25.1
Q ss_pred CccccCCCCCCccccchHHHHHhhCcccc
Q psy12906 34 RPVQCEQGCGSVIPMDELKYLSNQCEYHQ 62 (303)
Q Consensus 34 ~~v~Cp~gCg~~v~R~eL~~Hl~~C~~r~ 62 (303)
..|.||-.....|++..|+.|+..|..+.
T Consensus 4 ~~v~CPyd~~H~i~~~~l~~Hl~kC~~r~ 32 (37)
T 2vy4_A 4 EVVICPYDSNHHMPKSSLAKHMASCRLRK 32 (37)
T ss_dssp CCEECTTTSSCEECGGGHHHHHHHHHHHH
T ss_pred eEEECCCCCCeEeCHHHHHHHHHHHhhhh
Confidence 46788877889999999999999998774
No 24
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.02 E-value=7.6 Score=28.07 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 129 IVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMR 166 (303)
Q Consensus 129 ~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~ 166 (303)
.++.+..++.+|+.+-..+..+++.++.++..|++.|.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555666666666666665555543
No 25
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=76.66 E-value=14 Score=25.46 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELM 165 (303)
Q Consensus 123 ~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i 165 (303)
..+||.+|..+.....++++.-..++.-+..++.++.-|++.+
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 3578999999988888898888888888888999888887765
No 26
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=70.98 E-value=17 Score=25.60 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 124 KELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVL 161 (303)
Q Consensus 124 ~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L 161 (303)
++|+..+..+.+++.+|...+++.+.++..++.++.-|
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777777777777776666665543
No 27
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=70.95 E-value=15 Score=26.02 Aligned_cols=32 Identities=13% Similarity=0.246 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 137 MVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 137 ~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
+.+|+.....+..+.++++.++..|...+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666666666666555555444
No 28
>2l7x_A Envelope glycoprotein; cytoplasmic tail, viral protein; NMR {Crimean-congo hemorrhagic fever virus}
Probab=67.77 E-value=2.3 Score=32.25 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=34.6
Q ss_pred EecccHHhHhhcCCCCCCCccccCCCCCCccccchHHHHHhhCcccccC
Q psy12906 16 VKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYHQHD 64 (303)
Q Consensus 16 ~~L~~l~~Hl~~C~y~Pk~~v~Cp~gCg~~v~R~eL~~Hl~~C~~r~~~ 64 (303)
+.+-|-+-|-..|.|+ -||- |+.+++-.-|..|...||.|..+
T Consensus 16 vn~~DqelHdlnCs~N-----iCPY-C~nRls~eGl~RHV~~CPKR~er 58 (77)
T 2l7x_A 16 VNAIDAEMHDLNCSYN-----ICPY-CASRLTSDGLARHVTQCPKRKEK 58 (77)
T ss_dssp SSHHHHHHHHHHHTTT-----CCTT-TCCCCCTTTHHHHHTTCSHHHHH
T ss_pred ccHHHHHHHHcCCCcc-----cChh-hhccCCccchhhhcccCccHHHH
Confidence 3344556677899998 6875 88999999999999999998653
No 29
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.69 E-value=22 Score=25.42 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 137 MVNMETEMSEQRFQMTELKRQLTVLQELMRA 167 (303)
Q Consensus 137 ~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~ 167 (303)
+.+|+.+...+..+...++.++..|+..+..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555554433
No 30
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=64.70 E-value=12 Score=24.44 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12906 146 EQRFQMTELKRQLTVLQELMRA 167 (303)
Q Consensus 146 ~~~~~l~e~kr~l~~L~~~i~~ 167 (303)
.....++++|+|..+|+.+++.
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHHh
Confidence 3334445555555555555543
No 31
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=63.57 E-value=31 Score=25.19 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12906 142 TEMSEQRFQMTELKRQLTVLQELMRAMK 169 (303)
Q Consensus 142 ~~l~~~~~~l~e~kr~l~~L~~~i~~~~ 169 (303)
..++..+..+.++++.++.|+..+..++
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455556666777777777776665543
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=61.16 E-value=2.5 Score=42.69 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 139 NMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 139 ~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
+|++.+..++.+++.+-.+|+.|+..|+.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq 143 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ 143 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555444
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=60.77 E-value=45 Score=25.61 Aligned_cols=11 Identities=18% Similarity=0.610 Sum_probs=6.1
Q ss_pred HHHHHHHhhcc
Q psy12906 185 DDVARWSNSLS 195 (303)
Q Consensus 185 ~~I~~ws~kL~ 195 (303)
.+...|..+|+
T Consensus 62 ~E~~~wq~Rl~ 72 (81)
T 2jee_A 62 EQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34666666553
No 34
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=59.19 E-value=40 Score=28.76 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12906 124 KELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMK 169 (303)
Q Consensus 124 ~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~ 169 (303)
...+..+..++.+...+++.++.+...+.+..+-++.|++.+.++.
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666666665554
No 35
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=57.38 E-value=3 Score=34.30 Aligned_cols=30 Identities=23% Similarity=0.628 Sum_probs=25.4
Q ss_pred CceeeeeecccccccccccccccccCCCCC
Q psy12906 90 GYEIVRFIGEVDEELICSICSGVFEEPLQD 119 (303)
Q Consensus 90 G~~I~R~~g~vDe~i~C~~c~~~Le~~~q~ 119 (303)
|++...+...+++++.|+||..++.+|++.
T Consensus 18 g~~~~~~~~~l~~~~~C~IC~~~~~~pv~~ 47 (141)
T 3knv_A 18 GFSKTLLGTKLEAKYLCSACRNVLRRPFQA 47 (141)
T ss_dssp SBCGGGTGGGCCGGGBCTTTCSBCSSEEEC
T ss_pred CcchhhhhccCCcCcCCCCCChhhcCcEEC
Confidence 566677777899999999999999999764
No 36
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=56.04 E-value=15 Score=33.71 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12906 132 KQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMK 169 (303)
Q Consensus 132 ~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~ 169 (303)
.++.++..+..+..++...+.++++++..|+.+++.+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555555556666666666777777777764
No 37
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=55.97 E-value=29 Score=26.12 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 125 ELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 125 ~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
.+-+.+..+..+++=++..+.++...+.++.++|..|+..++.+
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555655555555555555555555555555555554443
No 38
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=54.41 E-value=61 Score=24.32 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12906 125 ELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMK 169 (303)
Q Consensus 125 ~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~ 169 (303)
+|-.++.-+..-+.+|...+-++..+++.+++++..|.+.++++.
T Consensus 18 ~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 18 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444556666666666666666666666666655543
No 39
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.02 E-value=43 Score=23.98 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12906 133 QQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMK 169 (303)
Q Consensus 133 ~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~ 169 (303)
...+...++.+..++..+..+++.++..|+..+..++
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445778888899999999999999998888876654
No 40
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.82 E-value=28 Score=24.40 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKRQL 158 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr~l 158 (303)
+++++.++.+|+.++..+..+.+++++++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555543
No 41
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=52.82 E-value=19 Score=25.63 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 136 KMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 136 k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
.+.+|+..+..+..+.++++.++..|...+..+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777776665544
No 42
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=52.80 E-value=6 Score=24.48 Aligned_cols=26 Identities=27% Similarity=0.691 Sum_probs=18.0
Q ss_pred CCCccccCCCCCCccccchHHHHHhhC
Q psy12906 32 PKRPVQCEQGCGSVIPMDELKYLSNQC 58 (303)
Q Consensus 32 Pk~~v~Cp~gCg~~v~R~eL~~Hl~~C 58 (303)
|...|.|| -|.+.+|-..+.+|+..|
T Consensus 3 pef~vqcp-vcqq~mpaahin~hldrc 28 (29)
T 3vhs_A 3 PEFQVQCP-VCQQMMPAAHINSHLDRC 28 (29)
T ss_dssp --CEEECT-TTCCEEEGGGHHHHHHHH
T ss_pred CceeeeCh-HHHHhCcHHHHHHHHhcc
Confidence 44567886 488888888888887655
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.58 E-value=53 Score=27.15 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 138 VNMETEMSEQRFQMTELKRQLTVLQEL 164 (303)
Q Consensus 138 ~~l~~~l~~~~~~l~e~kr~l~~L~~~ 164 (303)
..|+.++...+.++++.++++..|+..
T Consensus 92 ~~lK~el~~~~~k~e~~~~e~~~l~~~ 118 (138)
T 3hnw_A 92 YDLKHELIAAQIKAESSAKEIKELKSE 118 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.83 E-value=39 Score=32.87 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 124 KELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRA 167 (303)
Q Consensus 124 ~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~ 167 (303)
..+.+.+++.+++.++++++..+.+.+.++.+.+++.+++.+.+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIA 548 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHH
Confidence 44555555555555555555555554444444444444444333
No 45
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.70 E-value=54 Score=23.19 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 128 SIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQEL 164 (303)
Q Consensus 128 ~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~ 164 (303)
..++.++.++..|+.+-..+..+++.++.++..|++.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555444
No 46
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.25 E-value=32 Score=23.36 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 133 QQQKMVNMETEMSEQRFQMTELKRQLTVLQEL 164 (303)
Q Consensus 133 ~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~ 164 (303)
+.+++.++.+++.+.+.++++++.++..|+..
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567778888888888888888877777654
No 47
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=50.97 E-value=5.9 Score=30.43 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=27.3
Q ss_pred CCceeEecccHHhHhhcCCC-CCCCccccCCCCCCccccchHHHHH
Q psy12906 11 GCTVAVKLDSYSSHLTECEH-NPKRPVQCEQGCGSVIPMDELKYLS 55 (303)
Q Consensus 11 GC~~~~~L~~l~~Hl~~C~y-~Pk~~v~Cp~gCg~~v~R~eL~~Hl 55 (303)
+|..+++-..++.|+..|.- . .+.| -.|+..+...+...|-
T Consensus 15 ~Cgd~lKK~kv~~H~~~Cr~~~---~~SC-IDC~~~F~~~~y~~Ht 56 (79)
T 1wjv_A 15 ACGESVKKIQVEKHVSNCRNCE---CLSC-IDCGKDFWGDDYKSHV 56 (79)
T ss_dssp SSCCEEETTHHHHHHHHCTTCC---EEEE-TTTTEEEEGGGTTTCC
T ss_pred CCCCeeecccchhHHhhCCCCC---cEEe-cccCCeeCCCCEeCEe
Confidence 67777777777777766764 3 4566 3577777777766663
No 48
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.94 E-value=41 Score=25.99 Aligned_cols=34 Identities=9% Similarity=0.241 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12906 136 KMVNMETEMSEQRFQMTELKRQLTVLQELMRAMK 169 (303)
Q Consensus 136 k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~ 169 (303)
+..+++.....++.+...++.++..|+..+..++
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666665555443
No 49
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.60 E-value=60 Score=23.56 Aligned_cols=11 Identities=9% Similarity=0.295 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQ 133 (303)
Q Consensus 123 ~~~LR~~i~~~ 133 (303)
+.++|...+.+
T Consensus 11 l~eiRaQYE~i 21 (77)
T 3trt_A 11 MRDVRQQYESV 21 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445444444
No 50
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.38 E-value=71 Score=26.37 Aligned_cols=41 Identities=5% Similarity=0.160 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 127 RSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRA 167 (303)
Q Consensus 127 R~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~ 167 (303)
+...+.+.+++.++++++..+..++.+.+-++..+...+..
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~ 114 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE 114 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444433333
No 51
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.29 E-value=77 Score=24.33 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12906 120 HNCVKELRSIVHKQQQ---K-------MVNMETEMSEQRFQMTELKRQLTVLQELMRAMKV 170 (303)
Q Consensus 120 ~nC~~~LR~~i~~~~~---k-------~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~ 170 (303)
-|+...|...|...|. + +...+.++++.+.+..++..+|+.|+..|+.++.
T Consensus 13 leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 13 RELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3566667666655544 2 3344455666667777777777777777776643
No 52
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=49.02 E-value=53 Score=30.97 Aligned_cols=44 Identities=16% Similarity=0.096 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 125 ELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 125 ~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
.|..++.++...+...+.++..++.++..++.+|+.|++.+..+
T Consensus 9 ~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 9 KILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555555555555555544433
No 53
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.69 E-value=43 Score=33.93 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 125 ELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRA 167 (303)
Q Consensus 125 ~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~ 167 (303)
+||..++-++.++......|+.++..+++|+.+|+-|+.-|..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888777788888888888888888888877744
No 54
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=46.89 E-value=8.6 Score=29.51 Aligned_cols=25 Identities=16% Similarity=0.473 Sum_probs=22.0
Q ss_pred ccccCCCCCCccccchHHHHHhhCcc
Q psy12906 35 PVQCEQGCGSVIPMDELKYLSNQCEY 60 (303)
Q Consensus 35 ~v~Cp~gCg~~v~R~eL~~Hl~~C~~ 60 (303)
...| ++||+.|.+..++.|+..|.-
T Consensus 10 ~F~C-~~Cgd~lKK~kv~~H~~~Cr~ 34 (79)
T 1wjv_A 10 FFTC-NACGESVKKIQVEKHVSNCRN 34 (79)
T ss_dssp EEEE-SSSCCEEETTHHHHHHHHCTT
T ss_pred EEEc-CCCCCeeecccchhHHhhCCC
Confidence 6678 789999999999999988864
No 55
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=46.53 E-value=0.36 Score=41.00 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhcC---CchhhhhhhhchHHHHHHHhhcccccccccCccccCchHHHHHHHHHHHHhcCCchH
Q psy12906 157 QLTVLQELMRAMKVSN---PGVRVLAENMERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGH 229 (303)
Q Consensus 157 ~l~~L~~~i~~~~~~~---~~~~~~~~~~~~~~I~~ws~kL~~ar~~~~g~~iStP~~~~~~~~~~~l~~s~cp~~ 229 (303)
+|..|++.++.+.... .-+|+ |.+||+....++.++-..+.|+| |+...+||+.+....|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~g~~~w~---------I~~fS~~~~~~~~g~~~~i~S~~--F~~g~~G~~W~i~~yP~G 70 (178)
T 4gjh_A 6 QLNKNEERFKQLEGACYSGKLIWK---------VTDYRVKKREAVEGHTVSVFSQP--FYTSRCGYRLCARAYLNG 70 (178)
T ss_dssp HHHHHHHHHHHHHHCCSSSEEEEE---------ECCHHHHHHHHHTTSCCCEECCC--EESSTTSCEEEEEEETTC
T ss_pred HHHhHHHHHHHhcCcccceEEEEE---------ECCHHHHHhhhhcCCCcEEECCC--eEeCCCCeEEEEEEEECC
Confidence 3444444555543222 22676 99999988877755333566888 666666777777777765
No 56
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=45.29 E-value=96 Score=23.38 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 123 ~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
+..|-..++.+|.+|..|-.++...+.+ +|+++..|+.+++..
T Consensus 9 v~~LE~sld~LQTrfARLLaEy~ssQ~K---LKqRit~LE~~~~~~ 51 (74)
T 3swf_A 9 VTRMESSVDLLQTRFARILAEYESMQQK---LKQRLTKVEKFLKPL 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccc
Confidence 4566777777888777666555444433 566677777776654
No 57
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=43.82 E-value=81 Score=22.10 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 127 RSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELM 165 (303)
Q Consensus 127 R~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i 165 (303)
+..++.++.++..++.+...+..+++.++.++..|++.+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777788888888888888888888888777764
No 58
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=43.47 E-value=54 Score=25.34 Aligned_cols=12 Identities=8% Similarity=0.404 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy12906 147 QRFQMTELKRQL 158 (303)
Q Consensus 147 ~~~~l~e~kr~l 158 (303)
+..++..+..++
T Consensus 56 h~~ei~~le~~i 67 (84)
T 1gmj_A 56 HAKEIERLQKEI 67 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 59
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=43.44 E-value=86 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 127 RSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMR 166 (303)
Q Consensus 127 R~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~ 166 (303)
+..++.++.++..|+.+-..+..+++.++.++..|+..+.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777777777777776654
No 60
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=43.32 E-value=74 Score=21.51 Aligned_cols=38 Identities=21% Similarity=0.397 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 124 KELRSIVHKQQQ------KMVNMETEMSEQRFQMTELKRQLTVL 161 (303)
Q Consensus 124 ~~LR~~i~~~~~------k~~~l~~~l~~~~~~l~e~kr~l~~L 161 (303)
..|+..++.+.. ++..++.++..++.++..++..++-|
T Consensus 3 aalkselqalkkegfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666554 35566666666666666666655544
No 61
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=42.55 E-value=1.3e+02 Score=24.10 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 127 RSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 127 R~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
+..++-..+.+.++.++.++-.+.+..+++....|+..+..+
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444555555555555444443
No 62
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=42.27 E-value=83 Score=24.09 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 128 SIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 128 ~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
..+..+..+...++..++++..++..+..++..++..+.++
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666667777777777777777777777776665
No 63
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=40.77 E-value=45 Score=21.69 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 126 LRSIVHKQQQKMVNMETEMSEQRFQ 150 (303)
Q Consensus 126 LR~~i~~~~~k~~~l~~~l~~~~~~ 150 (303)
+|.+...+++.+.+++++-..++.+
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHH
Confidence 5777777887777777655444444
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.67 E-value=77 Score=30.71 Aligned_cols=14 Identities=14% Similarity=0.091 Sum_probs=5.6
Q ss_pred HHHHHHhhcccccc
Q psy12906 186 DVARWSNSLSRARV 199 (303)
Q Consensus 186 ~I~~ws~kL~~ar~ 199 (303)
+|.+.-++++..+.
T Consensus 573 ~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 573 KVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHTTC----
T ss_pred HHHHHHHHhcCCCc
Confidence 45555555555543
No 65
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=39.40 E-value=67 Score=21.07 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKR 156 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr 156 (303)
|.|+..++.+|..+...++++...++.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 556666666666666666665555555
No 66
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=39.05 E-value=68 Score=23.73 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 137 MVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 137 ~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
+.+|+..+.+++...+.+..+...|...+..+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554455555555544443
No 67
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=38.70 E-value=76 Score=30.29 Aligned_cols=29 Identities=10% Similarity=0.310 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 137 MVNMETEMSEQRFQMTELKRQLTVLQELM 165 (303)
Q Consensus 137 ~~~l~~~l~~~~~~l~e~kr~l~~L~~~i 165 (303)
..+|++.++.+....-++.++|+.|+-.+
T Consensus 221 ~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 221 RRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 34455555555555555555555555444
No 68
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=37.56 E-value=0.35 Score=40.16 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=30.6
Q ss_pred HHHHHHhhcccccccccCccccCchHHHHHHHHHHHHhcCCchH
Q psy12906 186 DVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGH 229 (303)
Q Consensus 186 ~I~~ws~kL~~ar~~~~g~~iStP~~~~~~~~~~~l~~s~cp~~ 229 (303)
.|.+||+....+..+....+.|+| |++...||..+....|+.
T Consensus 24 ~I~nfS~~~~~~~~g~~~~i~S~~--F~~~~gG~~W~i~~yP~G 65 (168)
T 1d00_A 24 KISDFARKRQEAVAGRIPAIFSPA--FYTSRYGYKMCLRIYLNG 65 (168)
T ss_dssp EEESHHHHHHHHHTTSSCCEECCC--EESSTTSCEEEEEEETTC
T ss_pred EECCHHHHHHHhhcCCCeEEECCC--eecCCCCEEEEEEEEeCC
Confidence 399999888776644333466888 776677888888888874
No 69
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.52 E-value=46 Score=23.29 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQQQKMVNMETEMSEQRFQMT 152 (303)
Q Consensus 123 ~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~ 152 (303)
+-.||..++.+++++..|.+++.++..++.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666677776666666666666553
No 70
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=37.14 E-value=83 Score=23.74 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRA 167 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~ 167 (303)
...+..+...++..++++..++..++.+|..++..+.+
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666777777777777777666666543
No 71
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=37.14 E-value=1.1e+02 Score=22.93 Aligned_cols=37 Identities=8% Similarity=0.155 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy12906 136 KMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSN 172 (303)
Q Consensus 136 k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~ 172 (303)
+..+++.....++.+...++.++..|+..+..++..-
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777788888888888888777775443
No 72
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=36.10 E-value=1.2e+02 Score=22.63 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHhhcCCc-hhhhhhhhchH
Q psy12906 126 LRSIVHKQQQKMVNMETEMSEQRFQMTELKRQ-LT----VLQELMRAMKVSNPG-VRVLAENMERD 185 (303)
Q Consensus 126 LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~-l~----~L~~~i~~~~~~~~~-~~~~~~~~~~~ 185 (303)
|...++.+..+..++-+.++.+...+..++.+ +. .|+..+..=+.+..| +-+||+-|++.
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~~LK~QAVNKLAEIMNRK 69 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTERTLKTQAVNKLAEIMNRK 69 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445555544444444444444444333211 11 333333333344444 66667666553
No 73
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=35.95 E-value=53 Score=29.69 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=39.2
Q ss_pred cCccccCchHHHHHHHHHHHHhc---------CCchHHHHHHHhhccccCCCcccccHHHHHhh-HHHHhhhhhhcCCCC
Q psy12906 202 WGGMISTPDVMLQAMIKRSLAES---------GCPGHILDQLMHNSHERNWPQGLSSLETRQNN-RRQYENYVCKRIPSK 271 (303)
Q Consensus 202 ~g~~iStP~~~~~~~~~~~l~~s---------~cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n-~~~~~~~v~~~~~~k 271 (303)
.=|++.||.+.-+..++..+.+. +||. + -.++| ..|..+ ... +..+..|+....-..
T Consensus 130 rIgVLaT~~T~~~~~y~~~l~~~~~~~~v~~~~~~~-~-v~~ie----~g~~~~-------~~~~~~~l~~~~~~l~~~g 196 (286)
T 2jfq_A 130 NVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPG-F-VPLVE----QMRYSD-------PTITSIVIHQTLKRWRNSE 196 (286)
T ss_dssp EEEEEECHHHHHHTHHHHHHHHHCTTCEEEEEECTT-H-HHHHH----TTCTTC-------HHHHHHHHHHHHGGGTTCS
T ss_pred EEEEEeChHHhcchHHHHHHHHhCCCCEEEecCCHH-H-HHHHH----cCCCCC-------chhHHHHHHHHHHHHHhCC
Confidence 45678899766555566655543 4555 2 23333 223222 122 445666666654333
Q ss_pred ceEEEEecCCCCCCC
Q psy12906 272 QAVVVLLCDNVHLPE 286 (303)
Q Consensus 272 ~~~~~~~~~n~h~~~ 286 (303)
-=+||||| +|||-
T Consensus 197 ~D~IVLGC--Th~p~ 209 (286)
T 2jfq_A 197 SDTVILGC--THYPL 209 (286)
T ss_dssp CSEEEEES--SSGGG
T ss_pred CCEEEEcC--cCHHH
Confidence 45789999 88874
No 74
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=35.46 E-value=1.1e+02 Score=24.08 Aligned_cols=42 Identities=5% Similarity=0.129 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 127 RSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 127 R~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
-+.++-+..++..++..++++..++..++.++..+...++.+
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666777777777777777777777766666554
No 75
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.44 E-value=65 Score=24.28 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELM 165 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i 165 (303)
....+.++..|+++-..++.++..++.++..|.+.+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666666666666665544
No 76
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.40 E-value=69 Score=23.00 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQQQ------KMVNMETEMSEQRFQMTELKRQLTVLQELM 165 (303)
Q Consensus 123 ~~~LR~~i~~~~~------k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i 165 (303)
.+..|+...+.+. .+.+|+.++..+..+.++++.++..|++.+
T Consensus 12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666655554 355666666666666666666666665543
No 77
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=35.36 E-value=1e+02 Score=27.77 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVL 161 (303)
Q Consensus 123 ~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L 161 (303)
+.++++....+..++.+...+...+..++++-+++++.+
T Consensus 173 ~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 173 LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555544443
No 78
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=34.97 E-value=1.4e+02 Score=22.28 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=12.1
Q ss_pred HHHHHHHHhhcCCc-hhhhhhhhchH
Q psy12906 161 LQELMRAMKVSNPG-VRVLAENMERD 185 (303)
Q Consensus 161 L~~~i~~~~~~~~~-~~~~~~~~~~~ 185 (303)
|+..+..=+.+..| +-+||+-|++.
T Consensus 44 lek~L~~E~~LK~QAVNKLAEIMNRK 69 (71)
T 1uix_A 44 FEKQLLTERTLKTQAVNKLAEIMNRK 69 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333333344444 66667666553
No 79
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=34.85 E-value=1.9e+02 Score=24.88 Aligned_cols=44 Identities=16% Similarity=0.298 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 125 ELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 125 ~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
.|+..++.+...-.+|++.++.+....-++.++|..|+-.+-.+
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL 143 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQL 143 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34555555555555666666666666666666666665554443
No 80
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=34.70 E-value=1.5e+02 Score=22.50 Aligned_cols=18 Identities=6% Similarity=0.232 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12906 124 KELRSIVHKQQQKMVNME 141 (303)
Q Consensus 124 ~~LR~~i~~~~~k~~~l~ 141 (303)
+++|+.+.+.++++..|+
T Consensus 14 rrl~E~~~q~qaEl~sLr 31 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALK 31 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH
Confidence 567888888887655433
No 81
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=34.48 E-value=70 Score=23.65 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy12906 141 ETEMSEQRFQMTELKRQLTVLQELMRAMKVSN 172 (303)
Q Consensus 141 ~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~ 172 (303)
++.+++++..+.+...+++.|+..+..+++..
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555556666666666666665554443
No 82
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=34.47 E-value=1.2e+02 Score=28.72 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 127 RSIVHKQQQKMVNMETEMSEQRFQ 150 (303)
Q Consensus 127 R~~i~~~~~k~~~l~~~l~~~~~~ 150 (303)
++.-..+|+++.++++.+...+.+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHH
Confidence 333333444444444433333333
No 83
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.08 E-value=55 Score=24.52 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKRQLT 159 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~ 159 (303)
|..++.+..++..+...++.+..+++.+++
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444555555455555555554443
No 84
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=33.94 E-value=55 Score=29.83 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=43.2
Q ss_pred cCccccCchHHHHHHHHHHHHhcC--------CchHHHHHHHhhccccCCCcccccHHHHHhhHHHHhhhhhhcCCCCce
Q psy12906 202 WGGMISTPDVMLQAMIKRSLAESG--------CPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQA 273 (303)
Q Consensus 202 ~g~~iStP~~~~~~~~~~~l~~s~--------cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n~~~~~~~v~~~~~~k~~ 273 (303)
.-|++.|+.++-+..+.+.|.+.| ||. +-.++| +.|..| ...+..+..|+.... | -=
T Consensus 134 ~IGVLaT~~Ti~s~~Y~~~l~~~~~~~V~~~~~~~--lV~~IE----~g~~~~-------~~~~~~~~~~l~~l~-g-~D 198 (274)
T 3uhf_A 134 EILVIATKATIKSEEYQKRLLSQGYTNINALATGL--FVPMVE----EGIFEG-------DFLQSAMEYYFKNIT-T-PD 198 (274)
T ss_dssp CEEEEECHHHHHHTHHHHHHHTTTCCCEEEEECTT--HHHHHH----TTCCSS-------HHHHHHHHHHHTTCC-C-CS
T ss_pred eEEEEeccccccHHHHHHHHHHcCCceEEecCCHH--HHHHHH----cCCCCC-------HHHHHHHHHHHHHhc-C-CC
Confidence 467899998777768888887643 542 233443 444432 223557888887766 4 45
Q ss_pred EEEEecCCCCCC
Q psy12906 274 VVVLLCDNVHLP 285 (303)
Q Consensus 274 ~~~~~~~n~h~~ 285 (303)
+||||| +|+|
T Consensus 199 ~iILGC--Th~P 208 (274)
T 3uhf_A 199 ALILAC--THFP 208 (274)
T ss_dssp EEEECS--TTGG
T ss_pred EEEECC--CChH
Confidence 789999 7776
No 85
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.91 E-value=1.6e+02 Score=22.59 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
....+.++.+|+++-..++.++.+++.++..|.+.+..+
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344455666777777777777777777777777666554
No 86
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=33.72 E-value=15 Score=29.32 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=20.6
Q ss_pred ccccCCCCCCccccchHHHHHhhCc
Q psy12906 35 PVQCEQGCGSVIPMDELKYLSNQCE 59 (303)
Q Consensus 35 ~v~Cp~gCg~~v~R~eL~~Hl~~C~ 59 (303)
.+.||+ |+-.|.-.-.+.||+.|=
T Consensus 70 ~~~C~n-C~R~vaa~RFApHLeKCm 93 (99)
T 3mhs_C 70 YIHCEN-CGRDVSANRLAAHLQRCL 93 (99)
T ss_dssp EEECTT-TCCEEEGGGHHHHHHHHS
T ss_pred eEECCC-CCCCchhhhhHHHHHHHH
Confidence 568975 999999999999998773
No 87
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=33.69 E-value=1.3e+02 Score=23.10 Aligned_cols=20 Identities=10% Similarity=0.229 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12906 148 RFQMTELKRQLTVLQELMRA 167 (303)
Q Consensus 148 ~~~l~e~kr~l~~L~~~i~~ 167 (303)
..+++.++.+|..|+..|..
T Consensus 50 ~~el~~h~~ei~~le~~i~r 69 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIER 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555433
No 88
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=33.16 E-value=41 Score=24.96 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 141 ETEMSEQRFQMTELKRQLTVLQELMR 166 (303)
Q Consensus 141 ~~~l~~~~~~l~e~kr~l~~L~~~i~ 166 (303)
+++..++..++++++++...|+..+.
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443
No 89
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=32.71 E-value=1.2e+02 Score=20.80 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQE 163 (303)
Q Consensus 123 ~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~ 163 (303)
+..|-..++.+|.+|..+-.++...+.+ +++.+..|+.
T Consensus 7 v~~Le~~ld~LqTr~ArLlae~~ssq~K---lKqRit~lE~ 44 (46)
T 3swy_A 7 VEQLGSSLDTLQTRFARLLAEYNATQMK---MKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 3455666666677666555444433333 4444444443
No 90
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=32.66 E-value=23 Score=23.51 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=17.7
Q ss_pred CccccCCCCCCccccchHHHHHh
Q psy12906 34 RPVQCEQGCGSVIPMDELKYLSN 56 (303)
Q Consensus 34 ~~v~Cp~gCg~~v~R~eL~~Hl~ 56 (303)
-...|| .|+..|+-.++.+|+.
T Consensus 8 ~~~~C~-~C~~~i~~~~~~EH~D 29 (39)
T 2i5o_A 8 DQVPCE-KCGSLVPVWDMPEHMD 29 (39)
T ss_dssp CEEECT-TTCCEEEGGGHHHHHH
T ss_pred CCcccc-cccCcCCcccccchhh
Confidence 356796 5999999999999973
No 91
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.55 E-value=65 Score=29.50 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQE 163 (303)
Q Consensus 123 ~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~ 163 (303)
+++|+..+..+.+++..|...+++.+.++..++.|++.|++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55667777777777777777777777777777777776543
No 92
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=31.75 E-value=15 Score=25.73 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=13.5
Q ss_pred cCceeeeeeccccccccccccc
Q psy12906 89 MGYEIVRFIGEVDEELICSICS 110 (303)
Q Consensus 89 CG~~I~R~~g~vDe~i~C~~c~ 110 (303)
||..+.....++=..|.||||+
T Consensus 9 Cg~~fs~~el~~lP~IrCpyCG 30 (48)
T 4ayb_P 9 CWKTFTDEQLKVLPGVRCPYCG 30 (48)
T ss_dssp TTTTCCCCCSCCCSSSCCTTTC
T ss_pred cCCCccHHHHhhCCCcccCccC
Confidence 5555554555555667788875
No 93
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=31.41 E-value=19 Score=24.58 Aligned_cols=22 Identities=18% Similarity=0.619 Sum_probs=18.4
Q ss_pred ccCCCCCCccccchHHHHHh-hCc
Q psy12906 37 QCEQGCGSVIPMDELKYLSN-QCE 59 (303)
Q Consensus 37 ~Cp~gCg~~v~R~eL~~Hl~-~C~ 59 (303)
-| ++||..+.-..+.+|++ .|.
T Consensus 19 vC-~~CgkPi~lsAIvdHLenhC~ 41 (44)
T 2lo3_A 19 VC-EKCGKPLALTAIVDHLENHCA 41 (44)
T ss_dssp EC-TTTCCEEETTTHHHHHHHCCT
T ss_pred hh-cccCCcchHHHHHHHHHHHhc
Confidence 57 79999999999999995 564
No 94
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.37 E-value=72 Score=23.57 Aligned_cols=43 Identities=23% Similarity=0.458 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 124 KELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMR 166 (303)
Q Consensus 124 ~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~ 166 (303)
.++.+.+.....++.+|+..+......+.+++.++.-+++-+.
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556667777778999999999999999999997776665553
No 95
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=31.03 E-value=25 Score=31.81 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=43.9
Q ss_pred cccCccccCchHHHHHHHHHHHHhcC---------CchHHHHHHHhhccccCCCcccccHHHHHhhHHHHhhhhhhcCCC
Q psy12906 200 TRWGGMISTPDVMLQAMIKRSLAESG---------CPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPS 270 (303)
Q Consensus 200 ~~~g~~iStP~~~~~~~~~~~l~~s~---------cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n~~~~~~~v~~~~~~ 270 (303)
++.-|++.|+.++-+..+++.|.+.| ||.- -.++| +.|.. ....+..+..|+....-.
T Consensus 111 ~~~IGVLaT~~Ti~s~~y~~~l~~~~~~~~V~~~~~~~l--V~~vE----~g~~~-------~~~~~~~l~~~l~~l~~~ 177 (268)
T 3out_A 111 LNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLF--VSMIE----EGFVS-------GHIVELVAKEYLSYFHDK 177 (268)
T ss_dssp CSEEEEEECHHHHHHTHHHHHHHHHCTTSEEEEEECTTH--HHHHH----TTCCS-------SHHHHHHHHHHHGGGTTS
T ss_pred CCeEEEEecCcccccHHHHHHHHHhCCCCEEecCCChHH--HHHHH----cCCcC-------CHHHHHHHHHHHHHHHhC
Confidence 33567899998777777777777654 4431 23443 33332 122345677777666543
Q ss_pred CceEEEEecCCCCCCC
Q psy12906 271 KQAVVVLLCDNVHLPE 286 (303)
Q Consensus 271 k~~~~~~~~~n~h~~~ 286 (303)
.-=+||||| +|+|-
T Consensus 178 g~D~iILGC--Th~pl 191 (268)
T 3out_A 178 NIQALILGC--THYPI 191 (268)
T ss_dssp CCSEEEECS--TTGGG
T ss_pred CCCEEEECC--CChHH
Confidence 345789999 78873
No 96
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=30.94 E-value=14 Score=27.18 Aligned_cols=24 Identities=25% Similarity=0.733 Sum_probs=19.7
Q ss_pred ccccccccccccccccCCCCCCCh
Q psy12906 99 EVDEELICSICSGVFEEPLQDHNC 122 (303)
Q Consensus 99 ~vDe~i~C~~c~~~Le~~~q~~nC 122 (303)
.+++++.|+||...+.+|...+.|
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~C 32 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCC 32 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTT
T ss_pred cCCcCCCCCCCChhhcCceECCCC
Confidence 677889999999999999766643
No 97
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=30.78 E-value=18 Score=25.66 Aligned_cols=24 Identities=25% Similarity=0.733 Sum_probs=19.2
Q ss_pred ccccccccccccccccCCCCCCCh
Q psy12906 99 EVDEELICSICSGVFEEPLQDHNC 122 (303)
Q Consensus 99 ~vDe~i~C~~c~~~Le~~~q~~nC 122 (303)
.+++++.|+||...+.+|...++|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~C 34 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCC 34 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSS
T ss_pred cCCCCCCCcCCChHHhCCeEcCCC
Confidence 567788999999999988766544
No 98
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=30.27 E-value=1.4e+02 Score=20.80 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 128 SIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 128 ~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
.....++.++..+...-.++...+.+-+.+|..|+..+.++
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445677788888888899999999999999999988775
No 99
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=30.00 E-value=62 Score=19.70 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 145 SEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 145 ~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
++++.+...+++++.-|+..+.++
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 344455556666666666665543
No 100
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=29.94 E-value=44 Score=29.78 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=38.4
Q ss_pred cCccccCchHHHHHHHHHHHHhc---------CCchHHHHHHHhhccccCCCcccccHHHHHhhHHHHhhhhhhcCCCCc
Q psy12906 202 WGGMISTPDVMLQAMIKRSLAES---------GCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQ 272 (303)
Q Consensus 202 ~g~~iStP~~~~~~~~~~~l~~s---------~cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n~~~~~~~v~~~~~~k~ 272 (303)
.=|++.||.+.-+..++..|.+. +||. ++. ++| ..|..+ =++ +..+..|+....-..-
T Consensus 111 rIgVlaT~~T~~~~~y~~~l~~~~~g~~v~~~~~~~-~v~-~ie----~g~~~~---~~~----~~~l~~~~~~l~~~~~ 177 (267)
T 2gzm_A 111 HVGIIGTIGTVKSGAYEEALKSINNRVMVESLACPP-FVE-LVE----SGNFES---EMA----YEVVRETLQPLKNTDI 177 (267)
T ss_dssp EEEEEECHHHHHHTHHHHHHHHHCTTCEEEEEECTT-HHH-HHH----TTCSSS---HHH----HHHHHHHHHHHHHSCC
T ss_pred EEEEEEChHHhccHHHHHHHHHhCCCCEEeccCCHH-HHH-HHh----CCCCCC---HHH----HHHHHHHHHHHHhcCC
Confidence 45678998777666666666654 4554 222 333 223221 123 3344555544332223
Q ss_pred eEEEEecCCCCCCC
Q psy12906 273 AVVVLLCDNVHLPE 286 (303)
Q Consensus 273 ~~~~~~~~n~h~~~ 286 (303)
=+||||| +|||-
T Consensus 178 d~iVLGC--Th~p~ 189 (267)
T 2gzm_A 178 DTLILGC--THYPI 189 (267)
T ss_dssp SEEEECS--TTGGG
T ss_pred CEEEEcc--cChHH
Confidence 5789999 88874
No 101
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.73 E-value=1.2e+02 Score=29.03 Aligned_cols=45 Identities=16% Similarity=0.374 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q psy12906 124 KELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLT-------VLQELMRAM 168 (303)
Q Consensus 124 ~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~-------~L~~~i~~~ 168 (303)
.++++++..++++..++++.+++++.++.+++.++. .|.+.+.++
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666666666555555555555555555444 445555554
No 102
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.45 E-value=1.5e+02 Score=22.04 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 126 LRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLT 159 (303)
Q Consensus 126 LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~ 159 (303)
|....+.++..+..++.++.+.+.+++.+.++.+
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq 36 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777666655444
No 103
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.23 E-value=83 Score=23.87 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 133 QQQKMVNMETEMSEQRFQMTELKRQLT 159 (303)
Q Consensus 133 ~~~k~~~l~~~l~~~~~~l~e~kr~l~ 159 (303)
++.+...+..++..++.+..+++.+++
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444333
No 104
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=28.96 E-value=62 Score=28.87 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=38.1
Q ss_pred cCccccCchHHHHHHHHHHHHhc---------CCchHHHHHHHhhccccCCCcccccHHHHHhhHHHHhhhhhhcCCCCc
Q psy12906 202 WGGMISTPDVMLQAMIKRSLAES---------GCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQ 272 (303)
Q Consensus 202 ~g~~iStP~~~~~~~~~~~l~~s---------~cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n~~~~~~~v~~~~~~k~ 272 (303)
.=|++.||.+.-+..++..|.+. +||. +.+++ |..|..+ ..-+..+..|+.+..-. -
T Consensus 120 rIgVlaT~~T~~~~~y~~~l~~~~~g~~v~~~~~~~--~v~~i----e~g~~~~-------~~~~~~l~~~~~~l~~~-~ 185 (273)
T 2oho_A 120 QVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPK--FVPIV----ESNEMCS-------SIAKKIVYDSLAPLVGK-I 185 (273)
T ss_dssp EEEEEECHHHHHHTHHHHHHHHHCTTSEEEEEECTT--HHHHH----CC------------HHHHHHHHHHHTTTTTS-C
T ss_pred eEEEEECchhhcchHHHHHHHHhCCCCEEEecCCHH--HHHHH----HCCCCCC-------HHHHHHHHHHHHHHHhc-C
Confidence 45788999766666666666654 3443 33333 2222211 12244555565554433 5
Q ss_pred eEEEEecCCCCCCC
Q psy12906 273 AVVVLLCDNVHLPE 286 (303)
Q Consensus 273 ~~~~~~~~n~h~~~ 286 (303)
=+||||| +|||-
T Consensus 186 d~iVLGC--Th~p~ 197 (273)
T 2oho_A 186 DTLVLGC--THYPL 197 (273)
T ss_dssp SEEEECS--TTGGG
T ss_pred CEEEEcC--CCHHH
Confidence 6899999 88874
No 105
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.91 E-value=1.8e+02 Score=21.72 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 131 HKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRA 167 (303)
Q Consensus 131 ~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~ 167 (303)
..++.-+.+-.++++..+..+.++..+|......|+.
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~ 58 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQM 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555544444443
No 106
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=28.88 E-value=63 Score=22.25 Aligned_cols=50 Identities=30% Similarity=0.620 Sum_probs=34.6
Q ss_pred EEccCCCCCCceeEe-cccHHhHhhcCCCCCCCccccC-CCCCCcc-ccchHHHHHh
Q psy12906 3 ISCDNASYGCTVAVK-LDSYSSHLTECEHNPKRPVQCE-QGCGSVI-PMDELKYLSN 56 (303)
Q Consensus 3 V~C~N~~~GC~~~~~-L~~l~~Hl~~C~y~Pk~~v~Cp-~gCg~~v-~R~eL~~Hl~ 56 (303)
..|+. .||..... ...|..|+.. +....+..|+ .+|+..+ .+..|..|+.
T Consensus 6 ~~C~~--~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~ 58 (89)
T 2wbs_A 6 HTCDY--AGCGKTYTKSSHLKAHLRT--HTGEKPYHCDWDGCGWKFARSDELTRHYR 58 (89)
T ss_dssp EECCS--TTTCCEESSHHHHHHHHTT--SCSSCCEECCSTTTCCEESSHHHHHHHHH
T ss_pred eeCCC--CCCCCcCCCHHHHHHHHHh--cCCCCCcCCCCCCCCCccCCHHHHHHHHH
Confidence 45643 37887775 5678899863 3334578898 5899665 5677888975
No 107
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=28.86 E-value=2.2e+02 Score=24.13 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 122 CVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 122 C~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
=+..|+.....++.++..+++++++-...+..++.++..|+-++..+
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47778899999999999999888888887777777777776666555
No 108
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.60 E-value=1.5e+02 Score=26.12 Aligned_cols=21 Identities=5% Similarity=-0.145 Sum_probs=9.0
Q ss_pred ceEEEEecCCCCCCCCCccCCc
Q psy12906 272 QAVVVLLCDNVHLPEDMISAPG 293 (303)
Q Consensus 272 ~~~~~~~~~n~h~~~~~~~~~g 293 (303)
.+||-+- ++.=.|=.|.+.|+
T Consensus 191 ~avv~v~-~~~C~GC~~~lppq 211 (256)
T 3na7_A 191 TSIVTIK-KQACGGCFIRLNDK 211 (256)
T ss_dssp GSEEECB-TTBCTTTCCBCCHH
T ss_pred ceEEEee-CCccCCCCeeeCHH
Confidence 4555442 33334444444443
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=28.59 E-value=51 Score=40.08 Aligned_cols=8 Identities=25% Similarity=0.078 Sum_probs=3.9
Q ss_pred hhhhhchH
Q psy12906 178 LAENMERD 185 (303)
Q Consensus 178 ~~~~~~~~ 185 (303)
|+.+..||
T Consensus 2082 L~~Ek~RW 2089 (3245)
T 3vkg_A 2082 LNSERGRW 2089 (3245)
T ss_dssp HHHHHHHH
T ss_pred hhhccccH
Confidence 44454544
No 110
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.49 E-value=1.2e+02 Score=19.88 Aligned_cols=30 Identities=17% Similarity=0.294 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 136 KMVNMETEMSEQRFQMTELKRQLTVLQELM 165 (303)
Q Consensus 136 k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i 165 (303)
+|.+|+....++-...++++.+..-|+..+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 355666666666666666666655555443
No 111
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.14 E-value=91 Score=30.27 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=11.4
Q ss_pred CCCCCccccchHHHHHhhCc
Q psy12906 40 QGCGSVIPMDELKYLSNQCE 59 (303)
Q Consensus 40 ~gCg~~v~R~eL~~Hl~~C~ 59 (303)
.|=+.+-||- ++.|...|.
T Consensus 14 ~gg~~RGpR~-vE~~~s~Ck 32 (390)
T 1deq_A 14 EGGGVRGPRL-VERQQSACK 32 (390)
T ss_pred cCCCCCCCch-hhhhccccC
Confidence 3444555555 457777776
No 112
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=28.12 E-value=2.3e+02 Score=22.59 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 124 KELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 124 ~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
..|...|+.+..++.++++.+...+..+.+..+++..++-....+
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L 70 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSIL 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777777666665554
No 113
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.51 E-value=1.5e+02 Score=28.72 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=8.0
Q ss_pred CCCccccCCCCC
Q psy12906 32 PKRPVQCEQGCG 43 (303)
Q Consensus 32 Pk~~v~Cp~gCg 43 (303)
|..-+-||.||+
T Consensus 13 ~~~G~~CPT~C~ 24 (409)
T 1m1j_C 13 ERFGSYCPTTCG 24 (409)
T ss_dssp GGGCCEEECTTH
T ss_pred cccCCcCCCccc
Confidence 344567888887
No 114
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=27.35 E-value=1.7e+02 Score=20.88 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQQQKMVNMETEMSE 146 (303)
Q Consensus 123 ~~~LR~~i~~~~~k~~~l~~~l~~ 146 (303)
+++||.+++.+++++..+++.+.+
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677766666665555544443
No 115
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=27.12 E-value=43 Score=25.42 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 137 MVNMETEMSEQRFQMTELKRQLTVLQEL 164 (303)
Q Consensus 137 ~~~l~~~l~~~~~~l~e~kr~l~~L~~~ 164 (303)
+..|++.|+++..++++++.+-.+|+..
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666677777777777777766655
No 116
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=26.98 E-value=10 Score=29.17 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=16.4
Q ss_pred ccccccccccccccccCCCCCC
Q psy12906 99 EVDEELICSICSGVFEEPLQDH 120 (303)
Q Consensus 99 ~vDe~i~C~~c~~~Le~~~q~~ 120 (303)
.+.+++.||||..++.+|+...
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~ 39 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLP 39 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECT
T ss_pred cCcHhcCCcCccccccCCeECC
Confidence 5667788888888888887544
No 117
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=26.74 E-value=1.1e+02 Score=28.94 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQQQK 136 (303)
Q Consensus 123 ~~~LR~~i~~~~~k 136 (303)
...|+..++..|..
T Consensus 399 ~~~~~~~~~~~~~~ 412 (471)
T 3mq9_A 399 THLLQQELTEAQKG 412 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 44555555555443
No 118
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.64 E-value=1.7e+02 Score=22.28 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12906 131 HKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMK 169 (303)
Q Consensus 131 ~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~ 169 (303)
.....+..++...+.++.....+++.++..++..+..+.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555555666666666666666666666665553
No 119
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=26.62 E-value=45 Score=29.90 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=37.0
Q ss_pred cCccccCchHHHHHHHHHHHHhc---------CCchHHHHHHHhhccccCCCcccccHHHHHhhHHHHhhhhhhcCCCCc
Q psy12906 202 WGGMISTPDVMLQAMIKRSLAES---------GCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQ 272 (303)
Q Consensus 202 ~g~~iStP~~~~~~~~~~~l~~s---------~cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n~~~~~~~v~~~~~~k~ 272 (303)
.=|++.||.+.-+..++..+.+. +||. +-.++| ..|..+ =++++ .+..|+....-..-
T Consensus 112 rIgVlaT~~T~~s~~y~~~i~~~~~~~~v~~~~~~~--~v~~ve----~g~~~~---~~~~~----~l~~~l~~l~~~~~ 178 (272)
T 1zuw_A 112 HIGVIGTENTIKSNAYEEALLALNPDLKVENLACPL--LVPFVE----SGKFLD---QTADE----IVKTSLYPLKDTSI 178 (272)
T ss_dssp EEEEEECHHHHHTTHHHHHHHHHCTTCEEEEEECTT--HHHHHT----SCCCCH---HHHHH----HHHHHHHHHHHSCC
T ss_pred EEEEEEChhhhhhhHHHHHHHHhCCCCEEEeccCHH--HHHHHH----CCCCCC---HHHHH----HHHHHHHHHHhcCC
Confidence 45678998766555555555432 4665 233443 333221 23333 34445444332233
Q ss_pred eEEEEecCCCCCCC
Q psy12906 273 AVVVLLCDNVHLPE 286 (303)
Q Consensus 273 ~~~~~~~~n~h~~~ 286 (303)
=+||||| +|+|-
T Consensus 179 D~iVLGC--Th~pl 190 (272)
T 1zuw_A 179 DSLILGC--THYPI 190 (272)
T ss_dssp SEEEEES--TTGGG
T ss_pred CEEEECc--cCHHH
Confidence 5789999 77773
No 120
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=26.58 E-value=1.1e+02 Score=29.78 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred ccCCCccccCceeeeeecccccccccccccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 81 LHTANTAIMGYEIVRFIGEVDEELICSICSGVFEEPLQDHNCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTV 160 (303)
Q Consensus 81 ~~Cpng~~CG~~I~R~~g~vDe~i~C~~c~~~Le~~~q~~nC~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~ 160 (303)
+.||.+ ||+. -.|-+.-..-...+.+|+..+.+..+..++.+.-++.
T Consensus 17 ~~CPTt--Cgl~-------------------------------d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ 63 (411)
T 3ghg_C 17 SYCPTT--CGIA-------------------------------DFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKA 63 (411)
T ss_dssp CEEECS--HHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCc--chHH-------------------------------HHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHH
Q ss_pred HHHHHHHHhhcCCchhhhhhhhchHHHHHHHhhc
Q psy12906 161 LQELMRAMKVSNPGVRVLAENMERDDVARWSNSL 194 (303)
Q Consensus 161 L~~~i~~~~~~~~~~~~~~~~~~~~~I~~ws~kL 194 (303)
|++....-....|. ....+.++|+||
T Consensus 64 ik~~~~~~q~~~~~--------n~~~~~q~Skkm 89 (411)
T 3ghg_C 64 IQLTYNPDESSKPN--------MIDAATLKSRKM 89 (411)
T ss_dssp HHHHHCTTTCCCTT--------CHHHHHHHHHHH
T ss_pred HHHhhccccCCCCc--------chhhHHHHHHHH
No 121
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=26.54 E-value=75 Score=28.73 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=39.8
Q ss_pred cCccccCchHHHHHHHHHHHHhc---------CCchHHHHHHHhhccccCCCcccccHHHHHhhHHHHhhhhhhcCCCCc
Q psy12906 202 WGGMISTPDVMLQAMIKRSLAES---------GCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQ 272 (303)
Q Consensus 202 ~g~~iStP~~~~~~~~~~~l~~s---------~cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n~~~~~~~v~~~~~~k~ 272 (303)
.=|++.||.+.-+..+++.+.+. +||. ++ .++| ..|..+ ...+..+..|+....-..-
T Consensus 132 rIgVLaT~~T~~s~~y~~~l~~~~~~~~v~~~~~~~-lv-~~ve----~g~~~~-------~~~~~~l~~~l~~l~~~g~ 198 (290)
T 2vvt_A 132 KIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPK-FV-PIVE----SNQYRS-------SVAKKIVAETLQALQLKGL 198 (290)
T ss_dssp EEEEEECHHHHHTTHHHHHHHTTCTTSEEEEEECTT-HH-HHHH----TTCTTS-------HHHHHHHHHHHGGGTTSCC
T ss_pred EEEEEeCcHhhhhHHHHHHHHHhCCCCEEEeccCHH-HH-HHHH----cCCCCC-------HHHHHHHHHHHHHHHhCCC
Confidence 45688999876665666666653 3443 22 2332 333221 2234556677755443234
Q ss_pred eEEEEecCCCCCCC
Q psy12906 273 AVVVLLCDNVHLPE 286 (303)
Q Consensus 273 ~~~~~~~~n~h~~~ 286 (303)
=+||||| +|||-
T Consensus 199 D~IVLGC--Th~p~ 210 (290)
T 2vvt_A 199 DTLILGC--THYPL 210 (290)
T ss_dssp SEEEECS--TTGGG
T ss_pred CEEEECC--cCHHH
Confidence 5789999 88874
No 122
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.15 E-value=1.9e+02 Score=27.54 Aligned_cols=35 Identities=9% Similarity=0.289 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 131 HKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELM 165 (303)
Q Consensus 131 ~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i 165 (303)
+.+.+++.+++++..+++..+.+++.+++.+++.+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 123
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=25.94 E-value=1.7e+02 Score=20.34 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 124 KELRSIVHKQQQKMVNMETEMSEQRFQMTELKR 156 (303)
Q Consensus 124 ~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr 156 (303)
..|++...++-+++.+++..-.+.+.++..+++
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 456666666666677666665555555544444
No 124
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.93 E-value=1.4e+02 Score=29.09 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 125 ELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELM 165 (303)
Q Consensus 125 ~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i 165 (303)
+||.++.-++.++...-..|+.++..+..|+.+|+-|+.-|
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555665666655444466666666666777666666665
No 125
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=25.44 E-value=81 Score=28.43 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=41.6
Q ss_pred cCccccCchHHHHHHHHHHHHhc---------CCchHHHHHHHhhccccCCCcccccHHHHHhhHHHHhhhhhhcCCCCc
Q psy12906 202 WGGMISTPDVMLQAMIKRSLAES---------GCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQ 272 (303)
Q Consensus 202 ~g~~iStP~~~~~~~~~~~l~~s---------~cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n~~~~~~~v~~~~~~k~ 272 (303)
.-|++.|+.+.-+..+++.+.+. +||. +-.++| ..|.. +=+ .+..+..|+....-..-
T Consensus 113 ~IGVLaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~--lV~~vE----~g~~~---~~~----~~~~l~~~l~~l~~~g~ 179 (269)
T 3ist_A 113 KIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPK--FVSVVE----SGEYK---SAI----AKKVVAESLLPLKSTKI 179 (269)
T ss_dssp EEEEEECHHHHHHTHHHHHHHHHCTTCEEEEEECHH--HHHHHH----TTCTT---SHH----HHHHHHHHHGGGGGSCC
T ss_pred eEEEEeccchhhHHHHHHHHHHhCCCCEEeccCCHH--HHHHHH----cCCCC---CHH----HHHHHHHHHHHHHhCCC
Confidence 45788999877777778877765 3554 224443 33321 112 34556666665543233
Q ss_pred eEEEEecCCCCCC
Q psy12906 273 AVVVLLCDNVHLP 285 (303)
Q Consensus 273 ~~~~~~~~n~h~~ 285 (303)
=+||||| +|+|
T Consensus 180 D~iVLGC--Th~p 190 (269)
T 3ist_A 180 DTVILGC--THYP 190 (269)
T ss_dssp CEEEECS--TTGG
T ss_pred CEEEECC--CCHH
Confidence 5789999 7887
No 126
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=25.38 E-value=2.2e+02 Score=22.01 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12906 143 EMSEQRFQMTELKRQLTVLQELMRAMK 169 (303)
Q Consensus 143 ~l~~~~~~l~e~kr~l~~L~~~i~~~~ 169 (303)
.+...+.++..++++|..++.++....
T Consensus 20 l~~gv~~~i~~Lk~eL~~m~a~L~da~ 46 (115)
T 3qfl_A 20 LHKGVKKNIEDLGKELESMNAALIKIG 46 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677778888888888887763
No 127
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.24 E-value=2.5e+02 Score=22.12 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 129 IVHKQQQKMVNMETEMSEQRFQMTELKR 156 (303)
Q Consensus 129 ~i~~~~~k~~~l~~~l~~~~~~l~e~kr 156 (303)
.+..++.++..|+.+-.+++.+.+.++-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 128
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.11 E-value=29 Score=23.54 Aligned_cols=24 Identities=33% Similarity=0.922 Sum_probs=18.5
Q ss_pred eecccccccccccccccccCCCCC
Q psy12906 96 FIGEVDEELICSICSGVFEEPLQD 119 (303)
Q Consensus 96 ~~g~vDe~i~C~~c~~~Le~~~q~ 119 (303)
+...+++++.|+||...+.+|...
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~ 36 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTI 36 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEEC
T ss_pred HHHhCccCCCCCcCCchhCCeEEe
Confidence 334678889999999988888643
No 129
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.89 E-value=27 Score=24.44 Aligned_cols=25 Identities=28% Similarity=0.697 Sum_probs=19.0
Q ss_pred cccccccccccccccccCCCCCCCh
Q psy12906 98 GEVDEELICSICSGVFEEPLQDHNC 122 (303)
Q Consensus 98 g~vDe~i~C~~c~~~Le~~~q~~nC 122 (303)
.++++++.|+||...+.+|.....|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~C 34 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITEC 34 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCC
Confidence 3677889999999988888654344
No 130
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.69 E-value=1.3e+02 Score=19.41 Aligned_cols=25 Identities=8% Similarity=0.108 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTEL 154 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~ 154 (303)
|.++..++.+|-.+-.+++++...+
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4445555554444444444443333
No 131
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.52 E-value=2.3e+02 Score=21.42 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 127 RSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 127 R~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
+...-.++.++..++.++.+++-+++++..++..++..-+.+
T Consensus 19 ~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 19 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 132
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.45 E-value=2.7e+02 Score=22.27 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-hhhhhh-hhchHHHHH
Q psy12906 123 VKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPG-VRVLAE-NMERDDVAR 189 (303)
Q Consensus 123 ~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~~~-~~~~~~-~~~~~~I~~ 189 (303)
.+.|+.....+..++..++..+.......+..-. .|+..+..++..+.. .+.+.+ .+.++++.+
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~---~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVS---VLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
No 133
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=24.41 E-value=1.6e+02 Score=27.69 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 129 IVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 129 ~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
.+.+++.++.+++..+..+..++..++.++..++..|..+
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l 45 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRL 45 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666555555444443
No 134
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.25 E-value=1.9e+02 Score=21.23 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKRQLTVL 161 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L 161 (303)
|..++.+...++.++.+++.+...++.++..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555666666666666666665544
No 135
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.88 E-value=2.1e+02 Score=27.43 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 125 ELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLT 159 (303)
Q Consensus 125 ~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~ 159 (303)
.|++++..++++..++++++++++.++.+++.++.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666655566555555555555555544
No 136
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=23.83 E-value=1.4e+02 Score=18.73 Aligned_cols=22 Identities=14% Similarity=0.454 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy12906 132 KQQQKMVNMETEMSEQRFQMTE 153 (303)
Q Consensus 132 ~~~~k~~~l~~~l~~~~~~l~e 153 (303)
.+.+++..+++++..++.++..
T Consensus 6 alkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333
No 137
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=23.71 E-value=2e+02 Score=27.58 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12906 123 VKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMK 169 (303)
Q Consensus 123 ~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~ 169 (303)
+.++++..+++++++.+++.+++++..++.+...+-..|.+.+.+++
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45778888888888888888888888887776666667888887774
No 138
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.47 E-value=1.8e+02 Score=19.71 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 139 NMETEMSEQRFQMTELKRQLTVLQE 163 (303)
Q Consensus 139 ~l~~~l~~~~~~l~e~kr~l~~L~~ 163 (303)
+|+...++++.+.++++..+..|+.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 139
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=23.31 E-value=63 Score=22.82 Aligned_cols=49 Identities=31% Similarity=0.582 Sum_probs=32.3
Q ss_pred EccCCCCCCceeEe-cccHHhHhhcCCCCCCCccccC-CCCCCcc-ccchHHHHHh
Q psy12906 4 SCDNASYGCTVAVK-LDSYSSHLTECEHNPKRPVQCE-QGCGSVI-PMDELKYLSN 56 (303)
Q Consensus 4 ~C~N~~~GC~~~~~-L~~l~~Hl~~C~y~Pk~~v~Cp-~gCg~~v-~R~eL~~Hl~ 56 (303)
.|+. .+|..... ...|..|+.. +....+..|+ .+|+..+ .+..|..|+.
T Consensus 17 ~C~~--~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~ 68 (100)
T 2ebt_A 17 YCDY--PGCTKVYTKSSHLKAHLRT--HTGEKPYKCTWEGCDWRFARSDELTRHYR 68 (100)
T ss_dssp ECCS--SSCCCEESCHHHHHHHHHH--HSCCCCEECCSSSCCCEESSHHHHHHHHH
T ss_pred EcCC--CCCCCcccCHHHHHHHHHH--hCCCCCeeCCCCCCCCccCCHHHHHHHHH
Confidence 4543 36777765 5678888853 2223478898 5899555 4567888885
No 140
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=23.21 E-value=25 Score=25.98 Aligned_cols=23 Identities=9% Similarity=0.273 Sum_probs=18.5
Q ss_pred cccccccccccccccccCCCCCC
Q psy12906 98 GEVDEELICSICSGVFEEPLQDH 120 (303)
Q Consensus 98 g~vDe~i~C~~c~~~Le~~~q~~ 120 (303)
+.+.+++.||||..++.+|+...
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~ 31 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLP 31 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECT
T ss_pred hcCchheECcccCchhcCCeECC
Confidence 35677899999999999998544
No 141
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.10 E-value=96 Score=23.93 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 126 LRSIVHKQQQKMVNMETEMSEQRF 149 (303)
Q Consensus 126 LR~~i~~~~~k~~~l~~~l~~~~~ 149 (303)
|++.+..++++..+++.++.+...
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554445444444443
No 142
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.91 E-value=1.5e+02 Score=19.13 Aligned_cols=27 Identities=4% Similarity=0.143 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKR 156 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr 156 (303)
|.++..|+.+|-.+...++++.+.++.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455555555555555555554444443
No 143
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.68 E-value=1.3e+02 Score=19.65 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKR 156 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr 156 (303)
|.|+..++.+|..+-..++++...++.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455666666666665555555555554
No 144
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=22.18 E-value=2.8e+02 Score=21.60 Aligned_cols=44 Identities=9% Similarity=0.283 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12906 127 RSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKV 170 (303)
Q Consensus 127 R~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~ 170 (303)
|..+.+.-.++.-+.+.+.+++.....|+....+|++.-..+..
T Consensus 36 k~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 36 KTVLNKIGDEIIVINELLNKLELEIQYQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566666677777777777777766666665555433
No 145
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.08 E-value=1.2e+02 Score=23.89 Aligned_cols=51 Identities=8% Similarity=0.296 Sum_probs=17.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 117 LQDHNCVKELRSIVHKQQQKMV-NMETEMSEQRFQMTELKRQLTVLQELMRA 167 (303)
Q Consensus 117 ~q~~nC~~~LR~~i~~~~~k~~-~l~~~l~~~~~~l~e~kr~l~~L~~~i~~ 167 (303)
+-+.||....+.+|..-.+++- .......+++.++.++.+++..|+...+.
T Consensus 21 ~TSsncshQVQqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~ 72 (96)
T 1t3j_A 21 FTSANCSHQVQQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNN 72 (96)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477787666666655444432 23333445555555555555555554443
No 146
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.05 E-value=1.7e+02 Score=22.89 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 138 VNMETEMSEQRFQMTELKRQLTVLQ 162 (303)
Q Consensus 138 ~~l~~~l~~~~~~l~e~kr~l~~L~ 162 (303)
.+|.+.+.++..+++.++.++..-+
T Consensus 52 aKL~Rk~DKl~~ele~l~~~l~~~k 76 (93)
T 3sjb_C 52 TKNNRKLDSLDKEINNLKDEIQSEN 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666554433
No 147
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=22.00 E-value=1.5e+02 Score=24.92 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 131 HKQQQKMVNMETEMSEQRFQMTELKRQLTVLQE 163 (303)
Q Consensus 131 ~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~ 163 (303)
..+..++..++..+..+..++.+++.+++.++.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555666666666666666666666655544
No 148
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=22.00 E-value=1.3e+02 Score=20.24 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy12906 139 NMETEMSEQRFQMTELKR 156 (303)
Q Consensus 139 ~l~~~l~~~~~~l~e~kr 156 (303)
.+++.+..++.+++.+..
T Consensus 20 ~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 20 DFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 149
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=21.90 E-value=2.4e+02 Score=21.22 Aligned_cols=36 Identities=8% Similarity=0.245 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcCCc
Q psy12906 139 NMETEMSEQRFQMTELKRQLTVLQELMRAM----KVSNPG 174 (303)
Q Consensus 139 ~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~----~~~~~~ 174 (303)
+|-+.+-+++..++....++.-|+++|-.+ ...+|.
T Consensus 18 ELi~l~lk~~~~l~~k~~~v~eLEdYID~LLvRVME~~P~ 57 (75)
T 3tso_C 18 EVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVMEETPS 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 334444455555555555666666666544 344455
No 150
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=21.80 E-value=1.7e+02 Score=18.84 Aligned_cols=27 Identities=7% Similarity=0.213 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKR 156 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr 156 (303)
|.++..|+.+|-.+-..++++.+.++.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444555555555444444444444443
No 151
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=21.68 E-value=2.6e+02 Score=24.30 Aligned_cols=50 Identities=18% Similarity=0.336 Sum_probs=31.7
Q ss_pred CCChHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q psy12906 119 DHNCVKELRSIVHKQQQK--MVNMETEMSE-QRFQMTELKRQLTVLQELMRAMK 169 (303)
Q Consensus 119 ~~nC~~~LR~~i~~~~~k--~~~l~~~l~~-~~~~l~e~kr~l~~L~~~i~~~~ 169 (303)
..+...+|+..++.+..+ +.++++++++ .+.+++...|+. .|.++|++|+
T Consensus 193 ~~d~~~Rl~~l~~lL~~e~e~~~l~~~I~~~v~~~~~k~Qrey-~LrEQlk~Iq 245 (252)
T 3ljc_A 193 MSDVNERLEYLMAMMESEIDLLQVEKRIRNRVKKQMEKSQREY-YLNEQMKAIQ 245 (252)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 667777777777766664 4466666554 344444444444 6788888874
No 152
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=21.12 E-value=1.1e+02 Score=26.87 Aligned_cols=69 Identities=16% Similarity=0.214 Sum_probs=42.1
Q ss_pred cCccccCchHHHHHHHHHHHHhcC--------CchHHHHHHHhhccccCCCcccccHHHHHhhHHHHhhhhhhcCCCCce
Q psy12906 202 WGGMISTPDVMLQAMIKRSLAESG--------CPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYENYVCKRIPSKQA 273 (303)
Q Consensus 202 ~g~~iStP~~~~~~~~~~~l~~s~--------cp~~~~~~~~~~~~e~~wp~~l~~l~~r~~n~~~~~~~v~~~~~~k~~ 273 (303)
.=|++.||.+.-+..++..+.+.| ||. +.+++|+ .|..+ ...+..+.+|+.+ .-..-=
T Consensus 110 rigVlaT~~T~~~~~y~~~l~~~g~~~v~~~~~~~--lv~~ie~----g~~~~-------~~~~~~l~~~~~~-~~~~~d 175 (255)
T 2jfz_A 110 PILVLGTKATIQSNAYDNALKQQGYLNISHLATSL--FVPLIEE----SILEG-------ELLETCMHYYFTP-LEILPE 175 (255)
T ss_dssp CEEEEECHHHHHHTHHHHHHHHTTCCCEEEEECTT--HHHHHHT----TCCSS-------HHHHHHHHHHHTT-CCSCCS
T ss_pred EEEEEECHHHHhChHHHHHHHHcCCCEEEecChHH--HHHHHHh----cccCC-------HHHHHHHHHHHhh-hcCCCC
Confidence 456789998888777888777765 332 3344442 22221 1234567777777 432345
Q ss_pred EEEEecCCCCCCC
Q psy12906 274 VVVLLCDNVHLPE 286 (303)
Q Consensus 274 ~~~~~~~n~h~~~ 286 (303)
+||||| +|||-
T Consensus 176 ~iILGC--Th~p~ 186 (255)
T 2jfz_A 176 VIILGC--THFPL 186 (255)
T ss_dssp EEEEES--TTGGG
T ss_pred EEEEcC--cChHH
Confidence 788999 77773
No 153
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.02 E-value=2.9e+02 Score=21.22 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchh
Q psy12906 124 KELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSNPGVR 176 (303)
Q Consensus 124 ~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~~~~~ 176 (303)
..+...+..+...=..+.+++.++...-..+..+|..++.....+....-+.|
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w 59 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQ 59 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555555555556666666666666666666655555543333333
No 154
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.96 E-value=2.6e+02 Score=22.59 Aligned_cols=42 Identities=5% Similarity=0.207 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 127 RSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168 (303)
Q Consensus 127 R~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~ 168 (303)
-+.++-+..++..++..+++....+..++.++..++..+..+
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777777777777777777766666555
No 155
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.75 E-value=1.6e+02 Score=21.61 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 134 QQKMVNMETEMSEQRFQMTELKRQLTVLQEL 164 (303)
Q Consensus 134 ~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~ 164 (303)
..++.+++.....+......++.++..|...
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 156
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.67 E-value=2.8e+02 Score=20.96 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy12906 129 IVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSN 172 (303)
Q Consensus 129 ~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~ 172 (303)
..+....+|..+..++.....++..+++++..+...+..+..+.
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~ 50 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLP 50 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35555667777777777777787777777777777777765444
No 157
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.50 E-value=1.5e+02 Score=21.19 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKR 156 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr 156 (303)
+..+..++..|+.+-..+..+++.++.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444433
No 158
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=20.44 E-value=1.2e+02 Score=19.52 Aligned_cols=16 Identities=6% Similarity=0.038 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12906 132 KQQQKMVNMETEMSEQ 147 (303)
Q Consensus 132 ~~~~k~~~l~~~l~~~ 147 (303)
|+..|+.+|-.+-.++
T Consensus 4 QLE~kVEeLl~~n~~L 19 (33)
T 3m48_A 4 QLEAKVEELLSKNWNL 19 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3344444444333333
No 159
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=20.13 E-value=3.2e+02 Score=21.39 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12906 123 VKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQEL 164 (303)
Q Consensus 123 ~~~LR~~i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~ 164 (303)
...+...++.+...+.++++.+.+.+.++..+..+++.+...
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566788888888889999999999999999998888766543
No 160
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.13 E-value=2.8e+02 Score=20.69 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy12906 130 VHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAMKVSN 172 (303)
Q Consensus 130 i~~~~~k~~~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~~~ 172 (303)
++....+|..+..++.....++..+++++..++..+..+..+.
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~ 45 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAA 45 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445556777777777777777777777776666666665443
No 161
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.09 E-value=2.8e+02 Score=23.72 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12906 139 NMETEMSEQRFQMTELKRQLTVLQELMRAMKV 170 (303)
Q Consensus 139 ~l~~~l~~~~~~l~e~kr~l~~L~~~i~~~~~ 170 (303)
++++..++.+.+...+++++......+.++..
T Consensus 75 ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~ 106 (175)
T 3lay_A 75 TAQKIYDDYYTQTSALRQQLISKRYEYNALLT 106 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444555667777777777776643
Done!