RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12906
(303 letters)
>d2fzpa1 d.345.1.1 (A:193-317) E3 ubiquitin-protein ligase NRDP1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 213 bits (544), Expect = 6e-71
Identities = 82/122 (67%), Positives = 102/122 (83%)
Query: 182 MERDDVARWSNSLSRARVTRWGGMISTPDVMLQAMIKRSLAESGCPGHILDQLMHNSHER 241
+E +++ W NSL ARVTRWGGMISTPD +LQA+IKRSL ESGCP I+++L+ N+HER
Sbjct: 2 IEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAHER 61
Query: 242 NWPQGLSSLETRQNNRRQYENYVCKRIPSKQAVVVLLCDNVHLPEDMISAPGLVMIFAHG 301
+WPQGL++LETRQ NRR YENYV KRIP KQAVVV+ C+N H+ +DM+ PGLVMIFAHG
Sbjct: 62 SWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFAHG 121
Query: 302 IE 303
+E
Sbjct: 122 VE 123
>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 190
Score = 36.5 bits (84), Expect = 0.002
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 1 LVISCDNASYGCTVAVKLDSYSSHLTECEHNPKRPVQCEQGCGSVIPMDEL 51
++ C AS GC + + + H CE P C +D +
Sbjct: 2 VLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGSLDAV 52
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 27.7 bits (61), Expect = 0.44
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 99 EVDEELICSICSGVFEEPLQDHNC 122
E E C I + ++P+
Sbjct: 4 EFPEYFRCPISLELMKDPVIVSTG 27
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 27.7 bits (61), Expect = 0.64
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 92 EIVRFIGEVDEELICSICSGVFEEP 116
E+ I + + L C IC + +EP
Sbjct: 10 EVQNVINAMQKILECPICLELIKEP 34
>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 200
Score = 28.3 bits (63), Expect = 0.80
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 197 ARVTRWGGMISTPDV-------MLQAMIKRSLAESGCPGHILDQLMHNSHE 240
ARV RW G ++ I + P + L+H++ E
Sbjct: 34 ARVARWNGQTRGDHAFTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPE 84
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 25.9 bits (56), Expect = 2.9
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 98 GEVDEELICSICSGVFEEPLQDHNC 122
+ +E + I S + +P+ +
Sbjct: 17 ADACDEFLDPIMSTLMCDPVVLPSS 41
>d1sqla_ d.96.1.3 (A:) 7,8-dihydroneopterin aldolase {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 120
Score = 25.7 bits (56), Expect = 4.2
Identities = 6/69 (8%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 69 DLELSFCTPYQSLHTANTAIMGYE-----IVRFIGEVDEELICSICSGVFEEPLQDHNCV 123
D++ + Y + L+ ++ + + L+ + +
Sbjct: 31 DIDAWVSLKKAGESDNLEDTISYVDIFSLAKEIVEGSPRNLLETVAELIASKTLEKFHQI 90
Query: 124 KELRSIVHK 132
+R + K
Sbjct: 91 NAVRVKLSK 99
>d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent
phosphoglycerate mutase, substrate-binding domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 234
Score = 26.2 bits (57), Expect = 4.6
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 15/100 (15%)
Query: 27 ECEHNPKRPVQCEQGCGSVIPMDELKYLSNQCEYHQHDSHGTDLELSFCTPYQSLHTANT 86
+ + + G MD K + ++ +G T
Sbjct: 92 QEKIKEYGVGEIATLSGRYYSMDRDKRWDRVEKAYRAMVYGEG------------PTYRD 139
Query: 87 AIMGYEIVRFIGEVDEELICSICSGVFEEP---LQDHNCV 123
+ E G DE ++ S+ P +QD++ +
Sbjct: 140 PLECIEDSYKHGIYDEFVLPSVIVREDGRPVATIQDNDAI 179
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 24.8 bits (53), Expect = 4.8
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 99 EVDEELICSICSGVFEEPLQDHNC 122
++ + L I + EP +
Sbjct: 3 DIPDYLCGKISFELMREPCITPSG 26
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 25.9 bits (56), Expect = 7.6
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 121 NCVKELRSIVHKQQQKMVNMETEMSEQRFQMTELKRQLTVLQELMRAM 168
+ + + + Q + E E+ +R + + +L E+ R
Sbjct: 183 KSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKN 230
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 167
Score = 25.4 bits (55), Expect = 7.9
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 149 FQMTELKRQLTVLQELMRAMKVSNPGVRVLAENMERDDVARW 190
FQ E +Q++ +++ + + + W
Sbjct: 124 FQGVEYSQQVSYAIRFAENVELKTDAAKEIYRVLMERKNPVW 165
>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus
halodurans [TaxId: 86665]}
Length = 415
Score = 25.7 bits (56), Expect = 8.8
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 228 GHILDQLMHNSHERNWPQGLSSLETRQNNRR 258
I D L+ + + N P + ++ +
Sbjct: 237 RIIRDCLLPVAEKHNIPFAMMIGVKKRVHPA 267
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 23.3 bits (50), Expect = 9.2
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 99 EVDEELICSICSGVFEEP 116
E + L C C + P
Sbjct: 2 EEFQFLRCQQCQAEAKCP 19
>d1xjva1 b.40.4.3 (A:6-145) Protection of telomeres protein 1, Pot1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 24.8 bits (54), Expect = 9.7
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 96 FIGEVDEELICSICSGVFEEPLQDHNCVKELRS 128
F G + +I S F +DH V+ LR
Sbjct: 101 FEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRV 133
>d1q25a1 b.64.1.1 (A:7-129) Cation-independent mannose-6-phosphate
receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
Length = 123
Score = 24.6 bits (53), Expect = 9.9
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Query: 219 RSLAESGCPGHILDQLMHNSHERNWPQGLSSLETRQNNRRQYEN-YVCKRIPSK-QAVVV 276
++ + C + + G S L+T + ++ CK+ K Q+ +
Sbjct: 28 GNMGVAQCGPSSAVCMHDLKTDSFHSVGDSLLKTASRSLLEFNTTVNCKQQNHKIQSSIT 87
Query: 277 LLCDNVHLPEDMISAPGLVMIF 298
LC + ++A V F
Sbjct: 88 FLCGKTLGTPEFVTATDCVHYF 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.399
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,114,200
Number of extensions: 50446
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 27
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)