BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12907
(949 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/469 (43%), Positives = 282/469 (60%), Gaps = 39/469 (8%)
Query: 170 SVQRKFEIDYERDTFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGLNAVSTYVEW 229
+ QR FEIDY RD+F+KDG+PFRY+SGS HY R PR+YW+DRL K++ AGLNA+ TYV W
Sbjct: 4 ATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPW 63
Query: 230 SFHEPSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKPNI 289
+FHEP PGQ+QF+ D D+EYFL LA LLV+LRPGPYICAE + GGLP+WL+ K +I
Sbjct: 64 NFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLE-KESI 122
Query: 290 TLRSKDEVYQHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSY-TCDKEHMIWLRD 348
LRS D Y V+KW L P++ LY NGGP+I VQVENE GSY CD +++ +L+
Sbjct: 123 LLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQK 182
Query: 349 QMKYYVRDAAVLYTTDGGGVGYLKC-TVPGVYATVDFGAATNVSSAFAAMRTVSPHGPLV 407
+ ++++ D VL+TTDG +LKC + G+Y TVDFG +N++ AF + R P GPL+
Sbjct: 183 RFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLI 242
Query: 408 NSEYYPGWLTHWGEKIATVDTDPVVKTLQIMLEMKANVNFYMFYGGTNFGFTAGESRAYX 467
NSE+Y GWL HWG+ +T+ T+ V +L +L A+VN YMF GGTNF + G + Y
Sbjct: 243 NSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWNGANSPYA 302
Query: 468 XXXXXXXXXXXXXX---------------------------------DYGQIILSPAASI 494
YG++ L ++
Sbjct: 303 AQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTLEKLKTV 362
Query: 495 FDKVAQTLP--PLTSAFPLSFEALDQSFGFVLYETIIP-DARFPDPALLTISGLRDRGQV 551
+ P P+ S +PL+F + Q +GFVLY T +P D P P ++G+ DR V
Sbjct: 363 GAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSNPAPLSSPLNGVHDRAYV 422
Query: 552 FVDEKLVTILYRNKMLSTPIMARPGQKLSILVENMGRINYGSYLHDPKG 600
VD +L RN +++ I + G L +LVENMGR+NYG+Y++D KG
Sbjct: 423 AVDGIPQGVLERNNVITLNITGKAGATLDLLVENMGRVNYGAYINDFKG 471
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 90/142 (63%), Gaps = 3/142 (2%)
Query: 19 LQKTRPTTYA-PGEIFPFQVENEMGSY-TCDKEHMIWLRDQMKYYVRDAAVLYTTDGGGV 76
L K +P Y G + QVENE GSY CD +++ +L+ + ++++ D VL+TTDG
Sbjct: 143 LPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHK 202
Query: 77 GYLKC-TVPGVYATVDFGAATNVSSAFAAMRTVSPHGPLVNSEYYPGWLTHWGEKIATVD 135
+LKC + G+Y TVDFG +N++ AF + R P GPL+NSE+Y GWL HWG+ +T+
Sbjct: 203 TFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIK 262
Query: 136 TDPVVKTLQIMLEMKANVNFYI 157
T+ V +L +L A+VN Y+
Sbjct: 263 TEAVASSLYDILARGASVNLYM 284
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 809 GILSEVLLDSKPLSPWSMTQYPLSNLSWI---------------DTAPATNTTK--LPVF 851
G++S + L S L+ W++ +PL + D A A N++ LP F
Sbjct: 471 GLVSNLTLSSNILTDWTI--FPLDTEDAVRSHLGGWGHRDSGHHDEAWAHNSSNYTLPAF 528
Query: 852 YTATFTLNAEHPK-PLDGYVDMSNWAKGVVFINEHNLGKYWTTLGPQLTLYLPAPFIKPY 910
Y F++ + P P D ++ W KG V+IN NLG+YW GPQLTL++P I
Sbjct: 529 YMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQ-HILMT 587
Query: 911 PEVNRITVLELQAPP 925
N ITVLEL+ P
Sbjct: 588 SAPNTITVLELEWAP 602
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 236 bits (601), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 172/489 (35%), Positives = 242/489 (49%), Gaps = 64/489 (13%)
Query: 174 KFEIDYERDTFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGLNAVSTYVEWSFHE 233
+FEI RD F DGK F+ +SG+ HYFR P W L L+A G N V TYV W+ HE
Sbjct: 3 RFEI---RDDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHE 59
Query: 234 PSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKPNITLRS 293
P G+F F GD DLE FL++A L ++RP P+ICAE +FGGLP+WL+T N+ +RS
Sbjct: 60 PCEGEFHFEGDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLLT--KNMRIRS 117
Query: 294 KDEVYQHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTCDKEHMIWLRDQMKYY 353
D Y V +++ QL PR+ L NGG I+++QVENE GSY DK ++ +R Q+
Sbjct: 118 SDPAYIEAVGRYYDQLLPRLVPRLLDNGGNILMMQVENEYGSYGEDKAYLRAIR-QLMEE 176
Query: 354 VRDAAVLYTTDGGGVGYLKCTV---PGVYATVDFGAATNVSSAFAAMRT-VSPHG---PL 406
L+T+DG LK ++ T +FG+ + F+ M+ HG PL
Sbjct: 177 CGVTCPLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYN--FSQMQEFFDEHGKKWPL 234
Query: 407 VNSEYYPGWLTHWGEKIATVDTDPVVKTLQIMLEMKANVNFYMFYGGTNFGFTAG----- 461
+ E++ GW W E I T D + ++ +LE + ++N YMF+GGTNFGF G
Sbjct: 235 MCMEFWDGWFNRWKEPIITRDPKELADAVREVLE-QGSINLYMFHGGTNFGFMNGCSARG 293
Query: 462 ------------------ESRAYXXXXXXXXXXXXXXXDYGQ-------------IILSP 490
E +Y Q I L
Sbjct: 294 TLDLPQVTSYDYDALLDEEGNPTAKYLAVKKMMATHFSEYPQLEPLYKESMELDAIPLVE 353
Query: 491 AASIFDKVAQTLPPLTSAFPLSFEALDQSFGFVLYETIIP-DARFPDPALLTISGLRDRG 549
S+F+ + P+ S +P E L QS+G++LY T DA + L I G RDR
Sbjct: 354 KVSLFETLDSLSSPVESLYPQKMEELGQSYGYLLYRTETNWDAE--EERLRIIDG-RDRA 410
Query: 550 QVFVDEKLVTILYRNKMLSTPIMARPGQK----LSILVENMGRINYG-SYLHDP--KGWK 602
Q++VD + V Y+ + + I + +K L IL+ENMGR+NYG +L D KG +
Sbjct: 411 QLYVDGQWVKTQYQTE-IGEDIFYQGKKKGLSRLDILIENMGRVNYGHKFLADTQRKGIR 469
Query: 603 VYDCGPKHI 611
C H
Sbjct: 470 TGVCKDLHF 478
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 12/174 (6%)
Query: 750 LYGCETWILNKYETERLEAMEMWMKNITEAYTRKTENILLQEHHFHHECNILFYNEPNNG 809
LY W+ +Y+TE E +++ + + +R +IL++ + + + G
Sbjct: 412 LYVDGQWVKTQYQTEIGE--DIFYQGKKKGLSRL--DILIENMGRVNYGHKFLADTQRKG 467
Query: 810 ILSEVLLDSKPLSPWSMTQYPLSNLSWIDTAPATNTTKLPVFYTATFTLNAEHPKPLDGY 869
I + V D L W PL N ID + T P FY FT+ +P D Y
Sbjct: 468 IRTGVCKDLHFLLNWKHYPLPLDNPEKIDFSKGW-TQGQPAFYAYDFTVE----EPKDTY 522
Query: 870 VDMSNWAKGVVFINEHNLGKYWTTLGPQLTLYLPAPFIKPYPEVNRITVLELQA 923
+D+S + KGV F+N NLG++W +GP L+LY+P ++K NRI + E +
Sbjct: 523 LDLSEFGKGVAFVNGQNLGRFW-NVGPTLSLYIPHSYLK--EGANRIIIFETEG 573
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Query: 30 GEIFPFQVENEMGSYTCDKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKCTV---PGV 86
G I QVENE GSY DK ++ +R Q+ L+T+DG LK +
Sbjct: 146 GNILMMQVENEYGSYGEDKAYLRAIR-QLMEECGVTCPLFTSDGPWRATLKAGTLIEEDL 204
Query: 87 YATVDFGAATNVSSAFAAMRTV-SPHG---PLVNSEYYPGWLTHWGEKIATVDTDPVVKT 142
+ T +FG+ + F+ M+ HG PL+ E++ GW W E I T D +
Sbjct: 205 FVTGNFGSKAPYN--FSQMQEFFDEHGKKWPLMCMEFWDGWFNRWKEPIITRDPKELADA 262
Query: 143 LQIMLEMKANVNFYI 157
++ +LE + ++N Y+
Sbjct: 263 VREVLE-QGSINLYM 276
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 215 bits (548), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 133/456 (29%), Positives = 214/456 (46%), Gaps = 41/456 (8%)
Query: 181 RDTFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGLNAVSTYVEWSFHEPSPGQFQ 240
++TF+ +G+PF + HY R P+ YW+ R++ +A G N + YV W+FHEP G++
Sbjct: 12 KNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKXCKALGXNTICLYVFWNFHEPEEGRYD 71
Query: 241 FTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKPNITLRSKDEVYQH 300
F G +D+ F LA V++RPGPY+CAE + GGLP WL+ K +I LR +D Y
Sbjct: 72 FAGQKDIAAFCRLAQENGXYVIVRPGPYVCAEWEXGGLPWWLLK-KKDIKLREQDPYYXE 130
Query: 301 YVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTCDKEHMIWLRDQMKYYVRDAAVL 360
V + ++ ++ GG II VQVENE G++ DK ++ +RD +K L
Sbjct: 131 RVKLFLNEVGKQLADLQISKGGNIIXVQVENEYGAFGIDKPYISEIRDXVKQAGFTGVPL 190
Query: 361 YTTDGGGVGYLKCTVPGVYATVDFGAATNVSSAFAAMRTVSPHGPLVNSEYYPGWLTHWG 420
+ D + + + T++FG N+ F ++ + P PL SE++ GW HWG
Sbjct: 191 FQCDWNS-NFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWFDHWG 249
Query: 421 EKIATVDTDPVVKTLQIMLEMKANVNFYMFYGGTNFGFTAGESRAYXXXXXXXXXXXXXX 480
K T + +VK + L+ + + Y +GGT+FG G +
Sbjct: 250 AKHETRSAEELVKGXKEXLDRNISFSLYXTHGGTSFGHWGGANFPNFSPTCTSYDYDAPI 309
Query: 481 XDYGQIILS------------PAASIFDKVAQTLP---------------------PLTS 507
+ G++ P ++ ++P P S
Sbjct: 310 NESGKVTPKYLEVRNLLGNYLPEGETLPEIPDSIPTIAIPTIKXTEXAVLFDNLPHPKES 369
Query: 508 AFPLSFEALDQSFGFVLYETIIPDARFPDPALLTISGLRDRGQVFVDEKLVTILYRNK-- 565
+ EA DQ +G +LY T + + L+T + D QVF++ K + L R K
Sbjct: 370 EDIRTXEAFDQGWGSILYRTSLSASDKEQTLLITEA--HDWAQVFLNGKKLATLSRLKGE 427
Query: 566 -MLSTPIMARPGQKLSILVENMGRINYGSYLHDPKG 600
++ P + + G +L ILVE GR N+G ++D KG
Sbjct: 428 GVVKLPPL-KEGDRLDILVEAXGRXNFGKGIYDWKG 462
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Query: 30 GEIFPFQVENEMGSYTCDKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKCTVPGVYAT 89
G I QVENE G++ DK ++ +RD +K L+ D + + + T
Sbjct: 152 GNIIXVQVENEYGAFGIDKPYISEIRDXVKQAGFTGVPLFQCDWNS-NFENNALDDLLWT 210
Query: 90 VDFGAATNVSSAFAAMRTVSPHGPLVNSEYYPGWLTHWGEKIATVDTDPVVKTLQIMLEM 149
++FG N+ F ++ + P PL SE++ GW HWG K T + +VK + L+
Sbjct: 211 INFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWFDHWGAKHETRSAEELVKGXKEXLDR 270
Query: 150 KANVNFY 156
+ + Y
Sbjct: 271 NISFSLY 277
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 844 NTTKLPVFYTATFTLNAEHPKPLDGYVDMSNWAKGVVFINEHNLGKYWTTLGPQLTLYLP 903
N P +Y +TF LN + D +++ NW+KG V++N H +G+YW +GPQ TLY+P
Sbjct: 503 NAENQPAYYRSTFNLN----ELGDTFLNXXNWSKGXVWVNGHAIGRYW-EIGPQQTLYVP 557
Query: 904 APFIKPYPEVNRITVLELQAP 924
++K N I +L+ P
Sbjct: 558 GCWLKKGE--NEIIILDXAGP 576
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 180 ERDTFVKDGKPFRYVSGSFHYFRSP-RYYWQDRLRKLRAAGLNAVSTYVEWSFHEPSPGQ 238
E FV +G+ SG H +R P + D K++A G N VS YV+W+ E +PG
Sbjct: 10 EHSIFV-NGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGH 68
Query: 239 FQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKPNITLRSKDEVY 298
+ G DL+ F + A + +L RPGPYI AE GG P WL + + LR+ DE Y
Sbjct: 69 YSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRV--DGILRTSDEAY 126
Query: 299 QHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTC------DKEHMIWLRDQMKY 352
+ + + + I + NGGPIIL Q ENE C D +M ++ D
Sbjct: 127 LKATDNYASNIAATIAKAQITNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIED---- 182
Query: 353 YVRDAAVL 360
+ RDA ++
Sbjct: 183 HARDAGIV 190
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 90/183 (49%), Gaps = 6/183 (3%)
Query: 177 IDYERDTFVKDGKPFRYVSGSFHYFRSPR-YYWQDRLRKLRAAGLNAVSTYVEWSFHEPS 235
+ ++ + G+ SG H FR P + D K++A G N VS YV+W+ E
Sbjct: 26 VTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKALGFNTVSFYVDWALLEGK 85
Query: 236 PGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKPNITLRSKD 295
PG+F+ G LE F E A + + +L RPGPYI AE GG P WL +K LR+
Sbjct: 86 PGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGGFPGWLQRVKGK--LRTDA 143
Query: 296 EVYQHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTCDKEHMIWLRDQMKYYVR 355
Y H + + A + I + NGGP+IL Q ENE Y+ E +++ YV
Sbjct: 144 PDYLHATDNYVAHIASIIAKAQITNGGPVILYQPENE---YSGAAEGVLFPNKPYMQYVI 200
Query: 356 DAA 358
D A
Sbjct: 201 DQA 203
>pdb|3U7V|A Chain A, The Structure Of A Putative Beta-Galactosidase From
Caulobacter Crescentus Cb15
Length = 552
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 25/177 (14%)
Query: 181 RDTFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAA----GLNAVSTYVEWSFHEPSP 236
R DG PF ++ + + W + K+ A G N V + W EP
Sbjct: 48 RHALXVDGAPFLXLAAQVNNSSA----WPSQXAKVWPAIEKVGANTVQVPIAWEQIEPVE 103
Query: 237 GQFQFTGDQDLEYFLELA-VREDLLVLLRPGPYICAERDFGGLPSWLMTIKPNITLRSKD 295
GQF F+ L+ LE A R+ LVLL G + + + P W+ KD
Sbjct: 104 GQFDFS---YLDLLLEQARERKVRLVLLWFGTWKNSSPSYA--PEWVKLDDKRFPRLIKD 158
Query: 296 EVYQHYVNKWFA--------QLFPRITRFLYGNGGP---IILVQVENEMGSYTCDKE 341
+ + Y A + F + L +I VQVENE G+Y ++
Sbjct: 159 DGERSYSXSPLAKSTLDADRKAFVALXTHLKAKDAAQKTVIXVQVENETGTYGSVRD 215
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 39/163 (23%)
Query: 209 QDRLRKLRAAGLNAVSTYV-EWSFHEPSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGP 267
++ +R AG++ + V W+ + + FT D+ +E +E++
Sbjct: 26 EEDMRMFNLAGIDVATVNVFSWAKIQRDEVSYDFTWLDDI---IERLTKENI-------- 74
Query: 268 YICAERDFGGLPSWLMTIKPNITLRSKDE-----------------VYQHYVNKWFAQLF 310
Y+C G P+W+ P++ LR E Y+ Y +L
Sbjct: 75 YLCLATSTGAHPAWMAKKYPDV-LRVDYEGRKRKFGGRHNSCPNSPTYRKYAKILAGKLA 133
Query: 311 PRITRFLYGNGGPIILVQVENEMGSY----TCDKEHMIWLRDQ 349
R Y + I++ V NE G Y C+K+ +WL+++
Sbjct: 134 ER-----YKDHPQIVMWHVSNEYGGYCYCDNCEKQFRVWLKER 171
>pdb|1O8P|A Chain A, Unbound Structure Of Cscbm6-3 From Clostridium
Stercorarium
Length = 151
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 360 LYTTDGGG--VGYLKCTVPGVYATVDFG-AATNVSSAFAA-------MRTVSPHGPLVNS 409
+++ GGG +GY++ Y +DFG AT+V++ A +R SP G L+ +
Sbjct: 44 IFSLPGGGSAIGYIENGYSTTYKNIDFGDGATSVTARVATQNATTIQVRLGSPSGTLLGT 103
Query: 410 EYY--PGWLTHWGEKIATVDTDPVVKTLQIMLEMKANVNFYMF 450
Y G + + AT+ VK + ++ NV++++F
Sbjct: 104 IYVGSTGSFDTYRDVSATISNTAGVKDIVLVFSGPVNVDWFVF 146
>pdb|1KWG|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase
pdb|1KWK|A Chain A, Crystal Structure Of Thermus Thermophilus A4
Beta-Galactosidase In Complex With Galactose
Length = 645
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 204 PRYYWQDRLRKLRAAGLNAVST-YVEWSFHEPSPGQFQF 241
P+ W++ R++R AGL+ V W+ EP PG+ ++
Sbjct: 12 PKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEW 50
>pdb|1NAE|A Chain A, Structure Of Cscbm6-3 From Clostridium Stercorarium In
Complex With Xylotriose
pdb|1O8S|A Chain A, Structure Of Cscbm6-3 From Clostridium Stercorarium In
Complex With Cellobiose
pdb|1OD3|A Chain A, Structure Of Cscbm6-3 From Clostridium Stercorarium In
Complex With Laminaribiose
Length = 168
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 360 LYTTDGGG--VGYLKCTVPGVYATVDFG-AATNVSSAFAA-------MRTVSPHGPLVNS 409
+++ GGG +GY++ Y +DFG AT+V++ A +R SP G L+ +
Sbjct: 61 IFSLPGGGSAIGYIENGYSTTYKNIDFGDGATSVTARVATQNATTIQVRLGSPSGTLLGT 120
Query: 410 EYY--PGWLTHWGEKIATVDTDPVVKTLQIMLEMKANVNFYMF 450
Y G + + AT+ VK + ++ NV++++F
Sbjct: 121 IYVGSTGSFDTYRDVSATISNTAGVKDIVLVFSGPVNVDWFVF 163
>pdb|3JS6|A Chain A, Crystal Structure Of Apo Psk41 Parm Protein
Length = 355
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 59/160 (36%), Gaps = 19/160 (11%)
Query: 79 LKCTVPGVYATVDFGAATNVSSAFAAMRTVSPHGPLVNS---EYYPGWLTHWGEKIATVD 135
K G Y+ +DFG+ T + + + V ++N ++Y +H +K
Sbjct: 178 FKAFTEGKYSVLDFGSGTTIIDTYQNXKRVEEESFVINKGTIDFYKRIASHVSKKSEGAS 237
Query: 136 TDP--VVKTLQIMLEMKANVNFYIPFSPFFFKAD---LASVQRKFEIDYER----DTFVK 186
P + K L+ + K N I F F+K + V FEI D +
Sbjct: 238 ITPRMIEKGLEYK-QCKLNQKTVIDFKDEFYKEQDSLIEEVXSNFEITVGNINSIDRIIV 296
Query: 187 DGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGLNAVSTY 226
G G+ +F S +Y+ D K + + V Y
Sbjct: 297 TG------GGANIHFDSLSHYYSDVFEKADDSQFSNVRGY 330
>pdb|1GMM|A Chain A, Carbohydrate Binding Module Cbm6 From Xylanase U
Clostridium Thermocellum
pdb|1UXX|X Chain X, Cbm6ct From Clostridium Thermocellum In Complex With
Xylopentaose
Length = 133
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 362 TTDGG-GVGYLKCTVPGVYATVDFGAATNVSSAFAA----------MRTVSPHGPLVNS- 409
T+DGG G+GY++ V+ ++FG N A A +R SP G L+ +
Sbjct: 25 TSDGGSGIGYIESGDYLVFNKINFGNGANSFKARVASGADTPTNIQLRLGSPTGTLIGTL 84
Query: 410 --EYYPGWLTHWGEKIATVDTDPVVKTLQIMLEMKANVNFYMF 450
GW ++ EK ++ L ++ N+++++F
Sbjct: 85 TVASTGGW-NNYEEKSCSITNTTGQHDLYLVFSGPVNIDYFIF 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,364,649
Number of Sequences: 62578
Number of extensions: 1344649
Number of successful extensions: 3611
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3561
Number of HSP's gapped (non-prelim): 39
length of query: 949
length of database: 14,973,337
effective HSP length: 108
effective length of query: 841
effective length of database: 8,214,913
effective search space: 6908741833
effective search space used: 6908741833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)