RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12907
(949 letters)
>gnl|CDD|216423 pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35.
Length = 318
Score = 379 bits (976), Expect = e-124
Identities = 132/282 (46%), Positives = 177/282 (62%), Gaps = 4/282 (1%)
Query: 183 TFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGLNAVSTYVEWSFHEPSPGQFQFT 242
+F+ DG+ FR +SGS HYFR P W DRL+K +A GLN + TYV W+ HEP PGQ+ F+
Sbjct: 1 SFLIDGQRFRLISGSIHYFRIPPEMWPDRLQKAKALGLNTIETYVFWNLHEPEPGQYDFS 60
Query: 243 GDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKPNITLRSKDEVYQHYV 302
G DL F++LA L V+LRPGPYICAE DFGGLP+WL+ P I LR+ D + V
Sbjct: 61 GILDLVKFIKLAQEAGLYVILRPGPYICAEWDFGGLPAWLLR-VPGIRLRTSDPPFLEAV 119
Query: 303 NKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTCDKEHMIWLRDQMKYYVRDAAVLYT 362
+++ L P++ NGGPIILVQ+ENE GSY DK ++ LR + + D AVL+T
Sbjct: 120 DRYLTALLPKMKPLQATNGGPIILVQIENEYGSYGVDKAYLQALRKLYREWGADMAVLFT 179
Query: 363 TDGGGVGYLKC-TVPG--VYATVDFGAATNVSSAFAAMRTVSPHGPLVNSEYYPGWLTHW 419
TDG L+C +P +Y T FG N +S F +R SP+GPL+ SE++ GW HW
Sbjct: 180 TDGPWGMCLQCGDLPDPVIYTTNGFGCGANPTSIFGLLRPFSPNGPLMWSEFWTGWFDHW 239
Query: 420 GEKIATVDTDPVVKTLQIMLEMKANVNFYMFYGGTNFGFTAG 461
G + + +++ L ++VN YMF+GGTNFGFT G
Sbjct: 240 GGPHHHRPAEDLAFSVERFLARGSSVNLYMFHGGTNFGFTNG 281
Score = 114 bits (288), Expect = 1e-27
Identities = 48/130 (36%), Positives = 70/130 (53%), Gaps = 3/130 (2%)
Query: 30 GEIFPFQVENEMGSYTCDKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKC-TVPG--V 86
G I Q+ENE GSY DK ++ LR + + D AVL+TTDG L+C +P +
Sbjct: 139 GPIILVQIENEYGSYGVDKAYLQALRKLYREWGADMAVLFTTDGPWGMCLQCGDLPDPVI 198
Query: 87 YATVDFGAATNVSSAFAAMRTVSPHGPLVNSEYYPGWLTHWGEKIATVDTDPVVKTLQIM 146
Y T FG N +S F +R SP+GPL+ SE++ GW HWG + + +++
Sbjct: 199 YTTNGFGCGANPTSIFGLLRPFSPNGPLMWSEFWTGWFDHWGGPHHHRPAEDLAFSVERF 258
Query: 147 LEMKANVNFY 156
L ++VN Y
Sbjct: 259 LARGSSVNLY 268
>gnl|CDD|166698 PLN03059, PLN03059, beta-galactosidase; Provisional.
Length = 840
Score = 139 bits (352), Expect = 7e-34
Identities = 94/316 (29%), Positives = 152/316 (48%), Gaps = 18/316 (5%)
Query: 151 ANVNFYIPFSPFFFKADLASVQRKFEIDYERDTFVKDGKPFRYVSGSFHYFRSPRYYWQD 210
+ V F + F F + S + Y+ F+ +G+ +SGS HY RS W D
Sbjct: 5 SLVVFLLLFLLFLLSSSWVSHGSA-SVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPD 63
Query: 211 RLRKLRAAGLNAVSTYVEWSFHEPSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYIC 270
++K + GL+ + TYV W+ HEPSPG + F DL F+++ L V LR GPYIC
Sbjct: 64 LIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYIC 123
Query: 271 AERDFGGLPSWLMTIKPNITLRSKDEVYQHYVNKWFAQLFPRIT--RFLYGNGGPIILVQ 328
AE +FGG P WL + P I R+ + ++ + K+ ++ + + GGPIIL Q
Sbjct: 124 AEWNFGGFPVWLKYV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182
Query: 329 VENEMGSYTCDKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKCTVPGVYATVDFGAAT 388
+ENE G + + K Y + AA + G GV ++ C V
Sbjct: 183 IENEYGPVEWE------IGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPV-----I 231
Query: 389 NVSSAFAA--MRTVSPHGPLVNSEYYPGWLTHWGEKIATVDTDPVVKTLQIMLEMKAN-V 445
+ + F + + P + +E + GW T +G + + + ++ ++ + +
Sbjct: 232 DTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFI 291
Query: 446 NFYMFYGGTNFGFTAG 461
N+YM++GGTNFG TAG
Sbjct: 292 NYYMYHGGTNFGRTAG 307
>gnl|CDD|224786 COG1874, LacA, Beta-galactosidase [Carbohydrate transport and
metabolism].
Length = 673
Score = 125 bits (315), Expect = 2e-29
Identities = 59/176 (33%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 177 IDYERDTFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGLNAVST-YVEWSFHEPS 235
+ Y+ +F++DG+ G ++ R PR W D LRK++A GLN V Y W+ HEP
Sbjct: 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPE 60
Query: 236 PGQFQFTGDQDLEYFLELAVREDLLVLLRPGP-YICAERDFGGLPSWLMTIKPNITLRSK 294
G+F FT D FLE A + L V+LR GP P L N +RS
Sbjct: 61 EGKFDFT-WLDEI-FLERAYKAGLYVILRTGPTGAPPAWLAKKYPEILAV-DENGRVRSD 117
Query: 295 D---------EVYQHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTCDKE 341
VY+ Y+++ Q+ R LYGNG +I Q +NE G + C +
Sbjct: 118 GARENICPVSPVYREYLDRILQQIRER----LYGNGPAVITWQNDNEYGGHPCYCD 169
>gnl|CDD|217042 pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of
beta-galactosidase enzymes belong to the glycosyl
hydrolase 42 family. The enzyme catalyzes the hydrolysis
of terminal, non-reducing terminal beta-D-galactosidase
residues.
Length = 376
Score = 63.8 bits (156), Expect = 2e-10
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 32/168 (19%)
Query: 204 PRYYWQDRLRKLRAAGLNAVS-TYVEWSFHEPSPGQFQFTGDQDLEYFLELAVREDLLVL 262
P W++ +R ++ AG+N V W+ EP G++ F L+ ++L + + V+
Sbjct: 8 PEETWEEDIRLMKEAGVNVVRLGIFAWAKLEPEEGKYDFGW---LDEIIDLLAKAGIKVI 64
Query: 263 LRPGPYICAERDFGGLPSWLMTIKPNITLRSKDEV------YQHYV--NKWFAQLFPRIT 314
L P+WL P I D HY + + + RI
Sbjct: 65 LATPT--------AAPPAWLAKKHPEILPVDADGRRRGFGSRHHYCPSSPVYREYAARIV 116
Query: 315 RFL---YGNGGPIILVQVENEMG-----SY--TCDKEHMIWLRDQMKY 352
L YG+ +I ++NE G Y TC + WL+ +Y
Sbjct: 117 EALAERYGDHPALIGWHIDNEYGCHVSECYCETCQQAFRKWLK--NRY 162
>gnl|CDD|222076 pfam13364, BetaGal_dom4_5, Beta-galactosidase jelly roll domain.
This domain is found in beta galactosidase enzymes. It
has a jelly roll fold.
Length = 109
Score = 31.4 bits (72), Expect = 0.61
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 14/75 (18%)
Query: 850 VFYTATFTLNAEHPKPLD-----GYVDMSNWAKGVVFINEHNLGKYWTTLGPQLTLYLPA 904
+FY FT + L + +++N + LG Y +GPQ T +P
Sbjct: 37 LFYRGHFTGGVDIGFSLSTQGGTAFRAS-------LWVNGYQLGSYVGHIGPQTTFPVPE 89
Query: 905 PFIKPYPEVNRITVL 919
+ V TVL
Sbjct: 90 GILNYRNTV--ATVL 102
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of
the band 7 domain of flotillin (reggie) like proteins
similar to stomatin and podicin (two lipid
raft-associated integral membrane proteins). Individual
proteins of this band 7 domain family may cluster to
form membrane microdomains which may in turn recruit
multiprotein complexes. Stomatin is widely expressed
and, highly expressed in red blood cells. It localizes
predominantly to the plasma membrane and to
intracellular vesicles of the endocytic pathway, where
it is present in higher order homo-oligomeric complexes
(of between 9 and 12 monomers). Stomatin interacts with
and regulates members of the degenerin/epithelia Na+
channel family in mechanosensory cells of Caenorhabditis
elegans and vertebrate neurons and, is implicated in
trafficking of Glut1 glucose transporters. Prohibitin is
a mitochondrial inner-membrane protein hypothesized to
act as a chaperone for the stabilization of
mitochondrial proteins. Podicin localizes to the plasma
membrane of podocyte foot processes and, is found in
higher order oligomers. Podocin plays a role in
regulating glomerular permeability. Mutations in the
podicin gene give rise to autosomal recessive steroid
resistant nephritic syndrome. This group also contains
proteins similar to three Caenorhabditis elegans
proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the
unc-1 and unc-24 genes result in abnormal motion and
altered patterns of sensitivity to volatile anesthetics.
MEC-2 and UNC-24 proteins interact with MEC-4 which is
part of the degenerin channel complex required for
response to gentle body touch.
Length = 215
Score = 29.8 bits (68), Expect = 4.8
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 877 KGVVFINEHNLGKYWTTLGPQLTLYLPAPFI-KPYPEVN-RITVLELQA 923
+GVV LGKY TLGP L + PFI + +V+ R VL++
Sbjct: 6 RGVVER----LGKYHRTLGPGLHFII--PFIDRIAYKVDLREQVLDVPP 48
>gnl|CDD|216545 pfam01515, PTA_PTB, Phosphate acetyl/butaryl transferase. This
family contains both phosphate acetyltransferase and
phosphate butaryltransferase. These enzymes catalyze the
transfer of an acetyl or butaryl group to
orthophosphate.
Length = 319
Score = 30.3 bits (69), Expect = 5.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 620 PVSGTADIFFHLMLDLSRKGYRTLSYLGGFLA 651
PV+G A++ L+ GY+ L G A
Sbjct: 256 PVAGKANVLVFPDLEAGNIGYKIAQRLAGAEA 287
>gnl|CDD|187652 cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like
proteins (5beta-POR), atypical (a) SDRs. 5beta-POR
catalyzes the reduction of progesterone to
5beta-pregnane-3,20-dione in Digitalis plants. This
subgroup of atypical-extended SDRs, shares the structure
of an extended SDR, but has a different glycine-rich
nucleotide binding motif (GXXGXXG) and lacks the YXXXK
active site motif of classical and extended SDRs.
Tyr-179 and Lys 147 are present in the active site, but
not in the usual SDR configuration. Given these
differences, it has been proposed that this subfamily
represents a new SDR class. Other atypical SDRs include
biliverdin IX beta reductase (BVR-B,aka flavin
reductase), NMRa (a negative transcriptional regulator
of various fungi), phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane reductase,
isoflavone reductases, and others. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. In addition to the
Rossmann fold core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 308
Score = 30.3 bits (69), Expect = 5.4
Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 19/88 (21%)
Query: 587 GRINYGSYLHDPKGWKVYDCGPKHIRSPLVFLPPVSGTADIFFHLMLDLSRKGYRTLSYL 646
G +YG +L K + + P LPP F++ DL L
Sbjct: 118 GTKHYGVHLGPFKTPRPEEPAR---EDPPRLLPP------NFYYDQEDL----------L 158
Query: 647 GGFLAQKFAEHTVLRPRVVSLFLCNSFY 674
K +VLRP + F +
Sbjct: 159 FEAAKGKGWTWSVLRPDAIIGFAPGNAM 186
>gnl|CDD|218167 pfam04599, Pox_G5, Poxvirus G5 protein. This protein has been
predicted to be related to the FEN-1 endonuclease.
Length = 426
Score = 30.0 bits (68), Expect = 7.4
Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 31/139 (22%)
Query: 703 SLSVENTDVDIQNSIEFMIRKYKLLTNKHLNIETHKKF-IKTFVWSVLLYGCETWILNKY 761
SL N +DI I+F I +Y L N + + ++ F++S L +
Sbjct: 279 SLKDTNKMIDIDKIIDF-INRYTSLDETVYNEDPPPEITVQEFIFSALATKW-----KEL 332
Query: 762 ETERLEAMEMWM---------KNITEAYTRKTENILLQEH--------HFHHECNILFYN 804
+ LE + + K I+ RK I+ + +I Y
Sbjct: 333 KDTYLEGISLLASLYCILEPKKEISVKEIRKLCKIIDKNKRYKKVTINDIKSVISIFGYE 392
Query: 805 EPNN-----GIL--SEVLL 816
N GIL ++L
Sbjct: 393 INNTSNIVFGILNLKNLML 411
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.435
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 49,870,020
Number of extensions: 4997966
Number of successful extensions: 4211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4201
Number of HSP's successfully gapped: 23
Length of query: 949
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 843
Effective length of database: 6,236,078
Effective search space: 5257013754
Effective search space used: 5257013754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (28.5 bits)