RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12907
(949 letters)
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase,
glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo
sapiens} PDB: 3thc_A*
Length = 654
Score = 408 bits (1049), Expect = e-131
Identities = 211/469 (44%), Positives = 287/469 (61%), Gaps = 39/469 (8%)
Query: 170 SVQRKFEIDYERDTFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGLNAVSTYVEW 229
+ QR FEIDY RD+F+KDG+PFRY+SGS HY R PR+YW+DRL K++ AGLNA+ TYV W
Sbjct: 4 ATQRMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPW 63
Query: 230 SFHEPSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKPNI 289
+FHEP PGQ+QF+ D D+EYFL LA LLV+LRPGPYICAE + GGLP+WL+ K +I
Sbjct: 64 NFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGLPAWLLE-KESI 122
Query: 290 TLRSKDEVYQHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSY-TCDKEHMIWLRD 348
LRS D Y V+KW L P++ LY NGGP+I VQVENE GSY CD +++ +L+
Sbjct: 123 LLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYLRFLQK 182
Query: 349 QMKYYVRDAAVLYTTDGGGVGYLKC-TVPGVYATVDFGAATNVSSAFAAMRTVSPHGPLV 407
+ ++++ D VL+TTDG +LKC + G+Y TVDFG +N++ AF + R P GPL+
Sbjct: 183 RFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLI 242
Query: 408 NSEYYPGWLTHWGEKIATVDTDPVVKTLQIMLEMKANVNFYMFYGGTNFGFTAGESRAYL 467
NSE+Y GWL HWG+ +T+ T+ V +L +L A+VN YMF GGTNF + G + Y
Sbjct: 243 NSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASVNLYMFIGGTNFAYWNGANSPYA 302
Query: 468 P--------AP-------------------------SLPPPKPAPKADYGQIILSPAASI 494
AP P P PK YG++ L ++
Sbjct: 303 AQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPIPPSTPKFAYGKVTLEKLKTV 362
Query: 495 FDKVAQTLP--PLTSAFPLSFEALDQSFGFVLYET-IIPDARFPDPALLTISGLRDRGQV 551
+ P P+ S +PL+F + Q +GFVLY T + D P P ++G+ DR V
Sbjct: 363 GAALDILCPSGPIKSLYPLTFIQVKQHYGFVLYRTTLPQDCSNPAPLSSPLNGVHDRAYV 422
Query: 552 FVDEKLVTILYRNKMLSTPIMARPGQKLSILVENMGRINYGSYLHDPKG 600
VD +L RN +++ I + G L +LVENMGR+NYG+Y++D KG
Sbjct: 423 AVDGIPQGVLERNNVITLNITGKAGATLDLLVENMGRVNYGAYINDFKG 471
Score = 112 bits (280), Expect = 1e-25
Identities = 56/130 (43%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Query: 30 GEIFPFQVENEMGSY-TCDKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKC-TVPGVY 87
G + QVENE GSY CD +++ +L+ + ++++ D VL+TTDG +LKC + G+Y
Sbjct: 155 GPVITVQVENEYGSYFACDFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLY 214
Query: 88 ATVDFGAATNVSSAFAAMRTVSPHGPLVNSEYYPGWLTHWGEKIATVDTDPVVKTLQIML 147
TVDFG +N++ AF + R P GPL+NSE+Y GWL HWG+ +T+ T+ V +L +L
Sbjct: 215 TTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDIL 274
Query: 148 EMKANVNFYI 157
A+VN Y+
Sbjct: 275 ARGASVNLYM 284
Score = 110 bits (275), Expect = 6e-25
Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 18/160 (11%)
Query: 799 NILFYNEPNNGILSEVLLDSKPLSPWSMTQYPLSNLSWID---------------TAPAT 843
N Y G++S + L S L+ W++ + A +
Sbjct: 461 NYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRDSGHHDEAWAHNS 520
Query: 844 NTTKLPVFYTATFTLNAEH-PKPLDGYVDMSNWAKGVVFINEHNLGKYWTTLGPQLTLYL 902
+ LP FY F++ + P D ++ W KG V+IN NLG+YW GPQLTL++
Sbjct: 521 SNYTLPAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFV 580
Query: 903 PAPFIKPYPEVNRITVLELQ-APPSDLKVKFTTEHKVAKP 941
P + N ITVLEL+ AP S + V +P
Sbjct: 581 PQHILMT-SAPNTITVLELEWAPCSSDDPELCAVTFVDRP 619
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller,
glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB:
4e8c_A
Length = 595
Score = 398 bits (1024), Expect = e-128
Identities = 161/475 (33%), Positives = 226/475 (47%), Gaps = 56/475 (11%)
Query: 174 KFEIDYERDTFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGLNAVSTYVEWSFHE 233
+FEI RD F DGK F+ +SG+ HYFR P W L L+A G N V TYV W+ HE
Sbjct: 3 RFEI---RDDFYLDGKSFKILSGAIHYFRVPPEDWYHSLYNLKALGFNTVETYVAWNLHE 59
Query: 234 PSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKPNITLRS 293
P G+F F GD DLE FL++A L ++RP P+ICAE +FGGLP+WL+T N+ +RS
Sbjct: 60 PCEGEFHFEGDLDLEKFLQIAQDLGLYAIVRPSPFICAEWEFGGLPAWLLT--KNMRIRS 117
Query: 294 KDEVYQHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTCDKEHMIWLRDQMKYY 353
D Y V +++ QL PR+ L NGG I+++QVENE GSY DK ++ +R M+
Sbjct: 118 SDPAYIEAVGRYYDQLLPRLVPRLLDNGGNILMMQVENEYGSYGEDKAYLRAIRQLMEEC 177
Query: 354 VRDAAVLYTTDGGGVGYLKCTV---PGVYATVDFG--AATNVSSAFAAMRTVSPHGPLVN 408
L+T+DG LK ++ T +FG A N S PL+
Sbjct: 178 GVT-CPLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMC 236
Query: 409 SEYYPGWLTHWGEKIATVDTDPVVKTLQIMLEMKANVNFYMFYGGTNFGFTAG------- 461
E++ GW W E I T D + ++ +LE + ++N YMF+GGTNFGF G
Sbjct: 237 MEFWDGWFNRWKEPIITRDPKELADAVREVLE-QGSINLYMFHGGTNFGFMNGCSARGTL 295
Query: 462 ---------------ESR--------------AYLPAPSLPPPKPAPKADYGQIILSPAA 492
E + P + I L
Sbjct: 296 DLPQVTSYDYDALLDEEGNPTAKYLAVKKMMATHFSEYPQLEPLYKESMELDAIPLVEKV 355
Query: 493 SIFDKVAQTLPPLTSAFPLSFEALDQSFGFVLYETIIPDARFPDPALLTISGLRDRGQVF 552
S+F+ + P+ S +P E L QS+G++LY T + L I RDR Q++
Sbjct: 356 SLFETLDSLSSPVESLYPQKMEELGQSYGYLLYRTETNWDA--EEERLRIIDGRDRAQLY 413
Query: 553 VDEKLVTILYR---NKMLSTPIMARPGQKLSILVENMGRINYGSYL---HDPKGW 601
VD + V Y+ + + + +L IL+ENMGR+NYG KG
Sbjct: 414 VDGQWVKTQYQTEIGEDIFYQGKKKGLSRLDILIENMGRVNYGHKFLADTQRKGI 468
Score = 111 bits (279), Expect = 2e-25
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 809 GILSEVLLDSKPLSPWSMTQYPLSNLSWIDTAPATNTTKLPVFYTATFTLNAEHPKPLDG 868
GI + V D L W PL N ID T P FY FT+ +P D
Sbjct: 467 GIRTGVCKDLHFLLNWKHYPLPLDNPEKIDF-SKGWTQGQPAFYAYDFTV----EEPKDT 521
Query: 869 YVDMSNWAKGVVFINEHNLGKYWTTLGPQLTLYLPAPFIKPYPEVNRITVLELQAPPSDL 928
Y+D+S + KGV F+N NLG++W +GP L+LY+P ++K NRI + E + +
Sbjct: 522 YLDLSEFGKGVAFVNGQNLGRFW-NVGPTLSLYIPHSYLK--EGANRIIIFETEGQYKE- 577
Query: 929 KVKFTTE 935
++ T +
Sbjct: 578 EIHLTRK 584
Score = 100 bits (250), Expect = 5e-22
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 30 GEIFPFQVENEMGSYTCDKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKCTV---PGV 86
G I QVENE GSY DK ++ +R M+ L+T+DG LK +
Sbjct: 146 GNILMMQVENEYGSYGEDKAYLRAIRQLMEECGVTC-PLFTSDGPWRATLKAGTLIEEDL 204
Query: 87 YATVDFG--AATNVSSAFAAMRTVSPHGPLVNSEYYPGWLTHWGEKIATVDTDPVVKTLQ 144
+ T +FG A N S PL+ E++ GW W E I T D + ++
Sbjct: 205 FVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWKEPIITRDPKELADAVR 264
Query: 145 IMLEMKANVNFYI 157
+LE + ++N Y+
Sbjct: 265 EVLE-QGSINLYM 276
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II,
NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides
thetaiotaomicron vpi-5482}
Length = 612
Score = 397 bits (1021), Expect = e-127
Identities = 139/468 (29%), Positives = 220/468 (47%), Gaps = 41/468 (8%)
Query: 168 LASVQRKFEIDYERDTFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGLNAVSTYV 227
++ + FE+ ++TF+ +G+PF + HY R P+ YW+ R++ +A G+N + YV
Sbjct: 1 MSLSEGTFEVG--KNTFLLNGEPFVVKAAEIHYPRIPKEYWEHRIKMCKALGMNTICLYV 58
Query: 228 EWSFHEPSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKP 287
W+FHEP G++ F G +D+ F LA + V++RPGPY+CAE + GGLP WL+ K
Sbjct: 59 FWNFHEPEEGRYDFAGQKDIAAFCRLAQENGMYVIVRPGPYVCAEWEMGGLPWWLLK-KK 117
Query: 288 NITLRSKDEVYQHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTCDKEHMIWLR 347
+I LR +D Y V + ++ ++ GG II+VQVENE G++ DK ++ +R
Sbjct: 118 DIKLREQDPYYMERVKLFLNEVGKQLADLQISKGGNIIMVQVENEYGAFGIDKPYISEIR 177
Query: 348 DQMKYYVRDAAVLYTTDGGGVGYLKCTVPGVYATVDFGAATNVSSAFAAMRTVSPHGPLV 407
D +K L+ D + + + T++FG N+ F ++ + P PL+
Sbjct: 178 DMVKQAGFTGVPLFQCDWNS-NFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLM 236
Query: 408 NSEYYPGWLTHWGEKIATVDTDPVVKTLQIMLEMKANVNFYMFYGGTNFGFTAG------ 461
SE++ GW HWG K T + +VK ++ ML+ + + YM +GGT+FG G
Sbjct: 237 CSEFWSGWFDHWGAKHETRSAEELVKGMKEMLDRNISFSLYMTHGGTSFGHWGGANFPNF 296
Query: 462 --------------ESRAYLP-------------APSLPPPKPAPKADYGQIILSPAASI 494
ES P P+ I +
Sbjct: 297 SPTCTSYDYDAPINESGKVTPKYLEVRNLLGNYLPEGETLPEIPDSIPTIAIPTIKMTEM 356
Query: 495 FDKVAQTLPPLTSAFPLSFEALDQSFGFVLYETIIPDARFPDPALLTISGLRDRGQVFVD 554
P S + EA DQ +G +LY T + + L I+ D QVF++
Sbjct: 357 AVLFDNLPHPKESEDIRTMEAFDQGWGSILYRTSLSASD--KEQTLLITEAHDWAQVFLN 414
Query: 555 EKLVTILYRNKMLSTPIMARP--GQKLSILVENMGRINYGSYLHDPKG 600
K + L R K + G +L ILVE MGR+N+G ++D KG
Sbjct: 415 GKKLATLSRLKGEGVVKLPPLKEGDRLDILVEAMGRMNFGKGIYDWKG 462
Score = 111 bits (279), Expect = 1e-25
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Query: 30 GEIFPFQVENEMGSYTCDKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKCTVPGVYAT 89
G I QVENE G++ DK ++ +RD +K L+ D + + + T
Sbjct: 152 GNIIMVQVENEYGAFGIDKPYISEIRDMVKQAGFTGVPLFQCDWNS-NFENNALDDLLWT 210
Query: 90 VDFGAATNVSSAFAAMRTVSPHGPLVNSEYYPGWLTHWGEKIATVDTDPVVKTLQIMLEM 149
++FG N+ F ++ + P PL+ SE++ GW HWG K T + +VK ++ ML+
Sbjct: 211 INFGTGANIDEQFKRLKELRPDTPLMCSEFWSGWFDHWGAKHETRSAEELVKGMKEMLDR 270
Query: 150 KANVNFYI 157
+ + Y+
Sbjct: 271 NISFSLYM 278
Score = 110 bits (276), Expect = 4e-25
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 14/139 (10%)
Query: 803 YNEPNNGILSEVLLDSKP----LSPWSMTQYPL--SNLSWIDTAPATNTTKLPVFYTATF 856
GI +V L S + W + P+ S N P +Y +TF
Sbjct: 456 GIYDWKGITEKVELQSDKGVELVKDWQVYTIPVDYSFARDKQYKQQENAENQPAYYRSTF 515
Query: 857 TLNAEHPKPLDGYVDMSNWAKGVVFINEHNLGKYWTTLGPQLTLYLPAPFIKPYPEVNRI 916
L + D +++M NW+KG+V++N H +G+YW GPQ TLY+P ++K N I
Sbjct: 516 NL----NELGDTFLNMMNWSKGMVWVNGHAIGRYWEI-GPQQTLYVPGCWLK--KGENEI 568
Query: 917 TVLELQAPPSDLKVKFTTE 935
+L++ P + + +
Sbjct: 569 IILDMAGPSKA-ETEGLRQ 586
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A
{Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Length = 1003
Score = 295 bits (757), Expect = 8e-86
Identities = 86/331 (25%), Positives = 127/331 (38%), Gaps = 31/331 (9%)
Query: 159 FSPFFFKADLASVQRKFEIDYERDTFVKDGKPFRYVSGSFHYFRSP-RYYWQDRLRKLRA 217
P D A + + ++ + G+ SG H FR P + D K++A
Sbjct: 8 GRPRDIILDDAKGPLQNIVTWDEHSLFVHGERVVIFSGEVHPFRLPVPSLYLDVFHKIKA 67
Query: 218 AGLNAVSTYVEWSFHEPSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGG 277
G N VS YV+W+ E PG+F+ G LE F E A + + +L RPGPYI AE GG
Sbjct: 68 LGFNTVSFYVDWALLEGKPGRFRADGIFSLEPFFEAATKAGIYLLARPGPYINAEVSGGG 127
Query: 278 LPSWLMTIKPNITLRSKDEVYQHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYT 337
P WL +K LR+ Y H + + A + I + NGGP+IL Q ENE
Sbjct: 128 FPGWLQRVKG--KLRTDAPDYLHATDNYVAHIASIIAKAQITNGGPVILYQPENEYSGAA 185
Query: 338 -----CDKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKC-TVPG---VYATVDFGAAT 388
+K +M ++ DQ + L D G T G +Y +
Sbjct: 186 EGVLFPNKPYMQYVIDQARNAGII-VPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGF 244
Query: 389 NVS------------SAFAAMRTVSPHGPLVNSEYYPGWLTHWGEKIATVDTDPVVKTLQ 436
+ + + +SP P E+ G +G + V +
Sbjct: 245 DCAHPSAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFE 304
Query: 437 IMLEMK------ANVNFYMFYGGTNFGFTAG 461
+ N YM +GGTN+G
Sbjct: 305 RVFYKNNMAAGVTIFNIYMTFGGTNWGNLGH 335
Score = 73.3 bits (179), Expect = 3e-13
Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 28/155 (18%)
Query: 30 GEIFPFQVENEMGSYTC-----DKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKC-TV 83
G + +Q ENE +K +M ++ DQ + L D G T
Sbjct: 170 GPVILYQPENEYSGAAEGVLFPNKPYMQYVIDQARNAGIIV-PLINNDAFPGGTGAPGTG 228
Query: 84 PG---VYATVDFGAATNVS------------SAFAAMRTVSPHGPLVNSEYYPGWLTHWG 128
G +Y + + + + +SP P E+ G +G
Sbjct: 229 LGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFG 288
Query: 129 EKIATVDTDPVVKTLQIMLEMK------ANVNFYI 157
+ V + + N Y+
Sbjct: 289 GWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIYM 323
Score = 49.0 bits (116), Expect = 8e-06
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 25/105 (23%)
Query: 824 WSMTQYPLSNLSWIDTAPATNTTKLPV---------FYTATFTLNAEHPKPLDGY----- 869
+ + PLS + +++++ P+ FY A L+ P Y
Sbjct: 852 FHLPSPPLS--DFTHGPSSSSSSSSPLDGIAHAGIAFYAAKLPLHL----PAQEYDIPLS 905
Query: 870 -----VDMSNWAKGVVFINEHNLGKYWTTLGPQLTLYLPAPFIKP 909
+ + ++++N GKY + +GPQ +P +
Sbjct: 906 FVFDNATAAAPYRALLYVNGFQYGKYVSNIGPQTEFPVPEGILDY 950
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family
GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN;
1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27
b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Length = 971
Score = 290 bits (743), Expect = 4e-84
Identities = 91/414 (21%), Positives = 143/414 (34%), Gaps = 68/414 (16%)
Query: 177 IDYERDTFVKDGKPFRYVSGSFHYFRSPR-YYWQDRLRKLRAAGLNAVSTYVEWSFHEPS 235
+ ++ + +G+ SG H +R P + D K++A G N VS YV+W+ E +
Sbjct: 6 VTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGN 65
Query: 236 PGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKPNITLRSKD 295
PG + G DL+ F + A + +L RPGPYI AE GG P WL + + LR+ D
Sbjct: 66 PGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQ--RVDGILRTSD 123
Query: 296 EVYQHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYT------CDKEHMIWLRDQ 349
E Y + + + + I + NGGPIIL Q ENE D +M ++ D
Sbjct: 124 EAYLKATDNYASNIAATIAKAQITNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDH 183
Query: 350 MKYYVRDAAVLYTTDGGGVGYLKC-TVPG---VYATVDF------------GAATNVSSA 393
+ + D G+ T G +Y + + +
Sbjct: 184 ARDAGIV-VPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242
Query: 394 FAAMRTVSPHGPLVNSEYYPGWLTHWGEKIATVDTDPVVKTLQIMLEMK------ANVNF 447
+ SP P E+ G WG + + + A +N
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNL 302
Query: 448 YMFYGGTNFGFTAG--------------ESR-----------------AYLPAPSLPPPK 476
YM +GGTN+G ESR P + P
Sbjct: 303 YMIFGGTNWGNLGHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVANPG 362
Query: 477 PAPKADYGQIILSPAASIFDKVAQTLPPLTSAFPLSFEALDQSFGFVLYETIIP 530
+ Y + S+F + + S V Y+ +P
Sbjct: 363 DLSTSTYTNTADLTVTPLLGS-----NSSASSFFVIRHSDYSSQASVEYKLTVP 411
Score = 73.7 bits (180), Expect = 2e-13
Identities = 24/155 (15%), Positives = 41/155 (26%), Gaps = 29/155 (18%)
Query: 30 GEIFPFQVENEMGSYT------CDKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKC-T 82
G I +Q ENE D +M ++ D + + D G+ T
Sbjct: 150 GPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHARDAGIVV-PFISNDAWAAGHNAPGT 208
Query: 83 VPG---VYATVDF------------GAATNVSSAFAAMRTVSPHGPLVNSEYYPGWLTHW 127
G +Y + + + + SP P E+ G W
Sbjct: 209 GAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPW 268
Query: 128 GEKIATVDTDPVVKTLQIMLEMK------ANVNFY 156
G + + + A +N Y
Sbjct: 269 GGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLY 303
Score = 55.2 bits (132), Expect = 1e-07
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 824 WSMTQYPLSNLSWIDTAPATNTTKLPV-FYTATFTLNAEHPKPLD--------GYVDMSN 874
+ Q P W ++P T TK + FY+ +F L+ P D
Sbjct: 828 FHQPQPPTQ--KWDSSSPFTGLTKPGIRFYSTSFDLDL--PSGYDIPLYFNFGNSTSTPA 883
Query: 875 WAKGVVFINEHNLGKYWTTLGPQLTLYLPAPFIKP 909
+ +++N + GKY +GPQ + +P +
Sbjct: 884 AYRVQLYVNGYQYGKYVNNIGPQTSFPVPEGILNY 918
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, TIM barrel,
glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}
Length = 552
Score = 191 bits (486), Expect = 4e-52
Identities = 47/236 (19%), Positives = 74/236 (31%), Gaps = 32/236 (13%)
Query: 174 KFEIDYERDTFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGLNAVSTYVEWSFHE 233
+ R + DG PF ++ + + + G N V + W E
Sbjct: 41 QLVTKDGRHALMVDGAPFLMLAAQVNNSSAWPSQMAKVWPAIEKVGANTVQVPIAWEQIE 100
Query: 234 PSPGQFQFTGDQDLEYFLELAVREDL-LVLLRPGPYICAE---------RDFGGLPSWLM 283
P GQF F+ L+ LE A + LVLL G + + D P +
Sbjct: 101 PVEGQFDFSY---LDLLLEQARERKVRLVLLWFGTWKNSSPSYAPEWVKLDDKRFPRLIK 157
Query: 284 TIKPNITLRSKDEVYQHYV---NKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTCDK 340
S + + + K F L + +I+VQVENE G+Y +
Sbjct: 158 --DDGERSYSMSPLAKSTLDADRKAFVALMTHLKAK-DAAQKTVIMVQVENETGTYGSVR 214
Query: 341 EHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKCTVPGVYATVDFGAATNVSSAFAA 396
+ + L G PG ++ FG + F A
Sbjct: 215 DFGPAAQKVFNGPAPAT--LVKAVG--------AKPGTWSQA-FGKDAD--EFFHA 257
Score = 35.8 bits (82), Expect = 0.077
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 13/70 (18%)
Query: 35 FQVENEMGSYTCDKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKCTVPGVYATVDFGA 94
QVENE G+Y ++ + L G PG ++ FG
Sbjct: 201 VQVENETGTYGSVRDFGPAAQKVFNGPAPAT--LVKAVG--------AKPGTWSQA-FGK 249
Query: 95 ATNVSSAFAA 104
+ F A
Sbjct: 250 DAD--EFFHA 257
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42,
trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP:
b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Length = 645
Score = 73.8 bits (180), Expect = 1e-13
Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 17/162 (10%)
Query: 204 PRYYWQDRLRKLRAAGLNAVSTYVE-WSFHEPSPGQFQFTGDQDLEYFLELAVREDLLVL 262
P+ W++ R++R AGL+ V W+ EP PG+ ++ L+ + E L V+
Sbjct: 12 PKERWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEWG---WLDEAIATLAAEGLKVV 68
Query: 263 LRPGPYICAERDFGGLPSWLMTIKPNITLRS--------KDEVYQHYVNKWFAQLFPRIT 314
L + P L + R VY+ + L R
Sbjct: 69 LGTPTATPPKWLVDRYPEILPVDREGRRRRFGGRRHYCFSSPVYREEARRIVTLLAER-- 126
Query: 315 RFLYGNGGPIILVQVENEMGSYTCDKEHMIWLRDQMKYYVRD 356
YG + Q +NE G + + + ++ + ++
Sbjct: 127 ---YGGLEAVAGFQTDNEYGCHDTVRCYCPRCQEAFRGWLEA 165
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase,
hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp}
PDB: 3tts_A*
Length = 675
Score = 68.8 bits (167), Expect = 4e-12
Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 17/157 (10%)
Query: 204 PRYYWQDRLRKLRAAGLNAVSTYVE-WSFHEPSPGQFQFTGDQDLEYFLELAVREDLLVL 262
+ ++ +R AG++ + V W+ + + FT L+ +E +E++ +
Sbjct: 21 DKATMEEDMRMFNLAGIDVATVNVFSWAKIQRDEVSYDFT---WLDDIIERLTKENIYLC 77
Query: 263 LRPGPYICAERDFGGLPSWLMTIKPNITL--------RSKDEVYQHYVNKWFAQLFPRIT 314
L P L Y+ Y +L R
Sbjct: 78 LATSTGAHPAWMAKKYPDVLRVDYEGRKRKFGGRHNSCPNSPTYRKYAKILAGKLAER-- 135
Query: 315 RFLYGNGGPIILVQVENEMGSYTCDKEHMIWLRDQMK 351
Y + I++ V NE G Y R +K
Sbjct: 136 ---YKDHPQIVMWHVSNEYGGYCYCDNCEKQFRVWLK 169
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 4e-10
Identities = 99/679 (14%), Positives = 191/679 (28%), Gaps = 244/679 (35%)
Query: 176 EIDYE--------RDTFVKDGKPFRYVSGSF----------HYFRSP-------RYYWQD 210
E Y+ D FV + + V H S R +W
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-- 69
Query: 211 RLRKLRAAGLNAVSTYVE--------W---SFHE----PSPGQFQFTGDQDLEY-----F 250
L + V +VE + PS + +D Y F
Sbjct: 70 ---TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 251 LELAV-REDL-------LVLLRPGPYICAERDFGGLPSWL----------MTIKPN---- 288
+ V R L+ LRP + + G +W+
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 289 ITL---RSKDEVYQHYVNKWFAQLFPRIT-RFLYGNGGPIILVQVENEMGSYTCDKEH-- 342
+ L S + V + + K Q+ P T R + + + + ++ E+ K +
Sbjct: 187 LNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 343 -MIWLRDQMKYYVRDAAVLYTTDGGGVGYLKCTVPGVYATVDFGAATNVSSAFAAMRTVS 401
++ L + V++A + L C +
Sbjct: 246 CLLVLLN-----VQNAKAWNAFN------LSCKI-------------------------- 268
Query: 402 PHGPLVNSEYYPGWLTHWGEKIATVDTDPVVKTLQIMLEMKANVNFYMFYGGTNFGFTAG 461
L+ + + D T I L+ + T
Sbjct: 269 ----LLTTRF-----------KQVTDFLSAATTTHISLDHH------------SMTLTPD 301
Query: 462 ESRAYL------PAPSLPP--PKPAPKADYGQIILSPAASIFDKVAQ-------TLPPLT 506
E ++ L LP P+ I A SI D +A LT
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRR-LSII----AESIRDGLATWDNWKHVNCDKLT 356
Query: 507 SAFPLSFEALDQSFGFVLYE--TIIP-DARFPDPALLTISGLRDRGQVFVDEKLVTILYR 563
+ S L+ + +++ ++ P A P LL++ + +V L++
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP-TILLSL--IWFDVIKSDVMVVVNKLHK 413
Query: 564 NKMLSTPIMARPGQKL-----SILVENMGRINYGSYLHD--------PKGWKVYDCGPKH 610
++ + ++ SI +E ++ LH PK + D P +
Sbjct: 414 YSLV-----EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 611 IRSPLVFLPPVSGTAD--IFFHL-----------MLDLSRKGYRTLSYLGGFLAQKFAEH 657
+ D + H+ + L R + L + FL QK
Sbjct: 469 L--------------DQYFYSHIGHHLKNIEHPERMTLFRMVF--LDF--RFLEQK---- 506
Query: 658 TVLRPRVVSLFLCNSFYDT-SVFNYSETYAIFRILPCVLLKKMVTGSLSVENTDVDIQNS 716
+R + S +T + + Y I P +++V I
Sbjct: 507 --IRHDSTAWNASGSILNTLQQLKFYKPY-ICDNDP--KYERLVN----------AI--- 548
Query: 717 IEFMIR-KYKLLTNKHLNI 734
++F+ + + L+ +K+ ++
Sbjct: 549 LDFLPKIEENLICSKYTDL 567
Score = 49.9 bits (118), Expect = 4e-06
Identities = 79/585 (13%), Positives = 155/585 (26%), Gaps = 181/585 (30%)
Query: 429 DPVVKTLQI--MLEMKANVNFYMFYGG---TNFGFTAGESRAYLPAPSLPPPKPAPKADY 483
D V TL++ L K F N+ F + PS+ + D
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD- 117
Query: 484 GQIILSPAASIFDKVAQTLPPLTSAFPLSFEALDQSFGFVLY------ETIIPDARFPDP 537
L +F K + + L + ++ +T
Sbjct: 118 ---RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--------- 165
Query: 538 ALLTISGLRDR-------GQVF------------VDEKLVTILYR-NKMLSTP--IMARP 575
+ + ++F V E L +LY+ + ++ +
Sbjct: 166 --VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 576 GQKLSILVENMGRI----NYGSYL------HDPKGWKVYDCGPKHIRSPLVFLPPVSGTA 625
++ + + R+ Y + L + K W ++ + ++
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-----LSCKILLTTRFKQVT 278
Query: 626 DIF-----FHLMLDLSRKGY---RTLSYLGGFLAQKFAE--HTVLR--PRVVSLF--LCN 671
D H+ LD S L +L + + VL PR +S+
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 672 SFYDTSVFNYSETYAIFRILPCVLLKKMVTGSLSVENTDVDIQNSIEFMIRK-YKLLT-- 728
T ++ + + L ++ SL ++ E+ RK + L+
Sbjct: 339 DGLAT--WDNWKHVNCDK------LTTIIESSL-------NVLEPAEY--RKMFDRLSVF 381
Query: 729 NKHLNIETHKKFIKTF--VWSVLLYGCETWILNKYETERLEAMEMWMKNITEAYTRKTEN 786
+I T +W ++ ++NK L +E K T +
Sbjct: 382 PPSAHIPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISI------ 428
Query: 787 ILLQEHHFHHECNILFYNEPNNGILSEVLLDSKPLSPWSMTQYPLSNLSWIDTAPATNTT 846
+ E + NE L ++D Y +
Sbjct: 429 -----PSIYLELKVKLENEYA---LHRSIVD----------HYNI--------------- 455
Query: 847 KLPVFYTATFTLNAEHPKPLDGYVDMSNWAKGVVFINEH----NLGKYWTTLGPQLTLYL 902
TF + P LD Y + I H + T ++L
Sbjct: 456 ------PKTFDSDDLIPPYLDQY-----FYS---HIGHHLKNIEHPERMTLFR---MVFL 498
Query: 903 PAPFIKPYPEVNRI--TVLELQAPPS------DLKV--KFTTEHK 937
F++ +I A S LK + ++
Sbjct: 499 DFRFLE-----QKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Score = 40.2 bits (93), Expect = 0.004
Identities = 79/516 (15%), Positives = 155/516 (30%), Gaps = 164/516 (31%)
Query: 511 LSFEALDQSFGF-----VLYETIIPDARFPDPALLTISGLRDRGQVFVDEKLVTIL---- 561
+ FE + + + V + + + D + + E++ I+
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKD----VQDMPK---SILSKEEIDHIIMSKD 59
Query: 562 --YRNKMLSTPIMARPGQKLSILVENMGRINYGSYLHDPKGWKVYDCGPKHIRSPLVFLP 619
L ++++ + + VE + RINY +L P K P
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSP--IKTEQRQP----------- 105
Query: 620 PVSGTADIFFHLMLDLSRKGYRTLSYLGGFLAQKFAEHTVLRPR---------------- 663
S ++ R Y Q FA++ V R +
Sbjct: 106 --SMMTRMYIE---------QRDRLYNDN---QVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 664 -------------VVSLFLCNSF-----YDTSVF-----NYSETYAIFRILP--CVLLKK 698
V+L +C S+ D +F N + + +L +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 699 MVT----GSLSVENTDVDIQNSIE--FMIRKYK--LLTNKHL-NIETHKKFIKTFVWSVL 749
T S +++ IQ + + Y+ LL L N++ + K F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---LLNVQ-NAKAWNAF----- 262
Query: 750 LYGCETWILNKYETERLEAMEMWMKNITEAYTRKTENILLQEHHFHHECNILFYNEPNNG 809
C+ + ++ K +T+ + T + +HH ++ +
Sbjct: 263 NLSCKILLTTRF------------KQVTDFLSAATTTHISLDHH-----SMTLTPDEVKS 305
Query: 810 ILSEVL-LDSKPLSPWSMTQYPLSNLSWIDTA----PAT-------NTTKLPVFYTATFT 857
+L + L + L +T P LS I + AT N KL T
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKL----TTIIE 360
Query: 858 LNAEHPKPLDG---YVDMSNWAKGVVF-----INEHNLGKYWTTLGPQLTLYLPAPF--- 906
+ +P + + +S VF I L W + + +
Sbjct: 361 SSLNVLEPAEYRKMFDRLS------VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 907 --IKPYPEVNRITVLELQAPPSDLKVKFTTE---HK 937
++ P+ + I++ + +LKVK E H+
Sbjct: 415 SLVEKQPKESTISIPSIY---LELKVKLENEYALHR 447
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 56.6 bits (136), Expect = 4e-08
Identities = 101/580 (17%), Positives = 163/580 (28%), Gaps = 239/580 (41%)
Query: 153 VNFYIPFSPFF--------FKADLASVQRKFEIDYERDTFVKDGKPFRYVSGSFHYFRSP 204
+P + FF F L F D E +P
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE--------------------PTTP 57
Query: 205 RYYWQDRLRKLRAAGLNAVSTYVEWSFHEPSPGQFQFTGDQDLEYFLELAVREDLLVLLR 264
+L L VS+ VE S GQF + L L + E
Sbjct: 58 --------AELVGKFLGYVSSLVEPS----KVGQF--------DQVLNLCLTE------- 90
Query: 265 PGPYICAERDF-GG-----LPSWLMTIKPNITLRSKDEVYQHY------VNKWFAQ---- 308
E + G L + L+ TL E+ ++Y + F +
Sbjct: 91 ------FENCYLEGNDIHALAAKLLQEND-TTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 309 -LFPRITR--------FLYGNGGPIILVQVENEMGSYTCDKEHMIWLRDQMKYYVRDAAV 359
LF + F GG Q + +E LRD
Sbjct: 144 ALFRAVGEGNAQLVAIF----GG-----QGNTD----DYFEE----LRD----------- 175
Query: 360 LYTTDGGGVGYLKCTVPGVYATV--DFGAATNVSSAFAAMRTVSPHGPLVNSEYYPG--- 414
LY T Y + D + + + + + G
Sbjct: 176 LYQT---------------YHVLVGDL-----IKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 415 --WLTHWGEKIATVDTD---------PVVKTLQIMLEMKANVNFYMFYGGTNFGFTAGES 463
WL + T D D P++ +Q+ ++ + GFT GE
Sbjct: 216 LEWLEN---PSNTPDKDYLLSIPISCPLIGVIQL-------AHYVVT--AKLLGFTPGEL 263
Query: 464 RAYLPAPSLPPPKPAPKADYGQIILSPAASI--------FDKVAQTLPPLTSAFPLSFEA 515
R+YL + + Q +++ A +I F + +T F +
Sbjct: 264 RSYLKGATG----------HSQGLVT-AVAIAETDSWESFFVSVRKA--ITVLFFIGVRC 310
Query: 516 LDQSFGFV-LYETIIPDAR-----FPDPALLTISGLRDRGQVFVDEKLVTILYRNKMLST 569
+++ L +I+ D+ P P +L+IS L + QV + V N L
Sbjct: 311 Y-EAYPNTSLPPSILEDSLENNEGVPSP-MLSISNL-TQEQV---QDYVN--KTNSHLP- 361
Query: 570 PIMARPGQKLSILVENMGRINYGSYLHDPKGWKVYDCGPKHIRSPLVFLPPVSGTADIFF 629
G+++ I +N G K+ LV VSG +
Sbjct: 362 -----AGKQVEI-----SLVN----------------GAKN----LV----VSGPPQSLY 387
Query: 630 HLMLDLSRKGYRTLSYLGGFLAQKFAEHTVLRPRVVSLFL 669
L L L R G L Q + + + + FL
Sbjct: 388 GLNLTL-----RKAKAPSG-LDQSRIPFSERKLKFSNRFL 421
Score = 55.1 bits (132), Expect = 1e-07
Identities = 102/629 (16%), Positives = 167/629 (26%), Gaps = 237/629 (37%)
Query: 369 GYLKCT--VPGVYATVDFGAATNVSSAFAAMRTVSPHGPLVNSE---------YYPGWLT 417
G L+ VP T F A+ + F + G + E + G+++
Sbjct: 14 GSLEHVLLVP----TASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVS 69
Query: 418 HWGEKIATVDTDPVVKTLQIMLEMKANVNFYMFYGGTNFGFTAGESRAYLP-------AP 470
E D V L + L F YL A
Sbjct: 70 SLVEPSKVGQFDQV---LNLCLT----------------EFE----NCYLEGNDIHALAA 106
Query: 471 SLPPPKPAPKADYGQIILS--PAASIFDKVAQTLPPLTSAFPLSFEALDQSFGFVLYETI 528
L ++I + A + + SA F A+ +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKR--PFDKKSNSAL---FRAVGEG--------- 152
Query: 529 IPDARFPDPALLTISGLRDRGQ----VFVDEKLVTILYRN-KMLSTPIMARPGQKLSILV 583
+A+ L+ I G GQ + +E L LY+ +L ++ + LS L+
Sbjct: 153 --NAQ-----LVAIFG----GQGNTDDYFEE-LRD-LYQTYHVLVGDLIKFSAETLSELI 199
Query: 584 ENMGRIN--YGSYLHDPKGW-----------------------------------KVYDC 606
+ L + W K+
Sbjct: 200 RTTLDAEKVFTQGL-NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 607 GPKHIRSPLV------------FLPPVSGTADIFFHLMLDLSRKGYRTLSYLGGFLAQKF 654
P +RS L + + + FF RK L ++G +
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF----VSVRKAITVLFFIG-VRCYEA 313
Query: 655 AEHTVLRPRVVSLFLCNSFYDTSVFNYSETYAIFRILPCVLLKKMVTGSLSVENTDVDIQ 714
+T L P ++ S+ N +E +P M LS+ N Q
Sbjct: 314 YPNTSLPPSILE---------DSLEN-NEG------VPS----PM----LSISNLT---Q 346
Query: 715 NSIEFMIRKYKLLTNKHLNIETHKKFI------KTFVWS---VLLYGCETWILNKYETER 765
++ + K TN HL I K V S LYG + +
Sbjct: 347 EQVQDYVNK----TNSHLPAGKQ-VEISLVNGAKNLVVSGPPQSLYGLNLTL------RK 395
Query: 766 LEAMEMWMKNITEAYTRKTENILLQEHH--------FHHECNILFYNEPNNGILSEVLLD 817
+A ++ RK L+ + FH S +L+
Sbjct: 396 AKAPSGLDQSRIPFSERK-----LKFSNRFLPVASPFH----------------SHLLVP 434
Query: 818 SKPLSPWSMTQYPLSNLSWIDTAPATNTTKLPVFYTATFTLNAEHPKPLDGY-----VDM 872
+ L +N+S+ ++PV+ T + L G VD
Sbjct: 435 ASDL---INKDLVKNNVSF-----NAKDIQIPVYDTFD----GSDLRVLSGSISERIVDC 482
Query: 873 -----SNWAKGVVFINEHNLGKYWTTLGP 896
W F H L GP
Sbjct: 483 IIRLPVKWETTTQFKATHIL-----DFGP 506
Score = 32.3 bits (73), Expect = 0.89
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 34/126 (26%)
Query: 838 DTAPATNTTKLPVFYTATFTLNAEHPKPLDGYVDMSNWAKGV---------VF----INE 884
DT + + TA K + S + V +F +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSN-----SALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 885 HNLGKYWTTLGPQLTLY-LPAPFIKPYPEVNRITVLELQAPPSDLKVKFTTEHKVAKPGS 943
Y+ L LY + + + T+ EL D + F
Sbjct: 168 ----DYFEEL---RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF--------TQG 212
Query: 944 SDVKRW 949
++ W
Sbjct: 213 LNILEW 218
Score = 30.0 bits (67), Expect = 4.6
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 56/129 (43%)
Query: 494 IFDKVAQTLPPLTSAFPLSFEALDQSFGFVLYETIIPDARFPDPALLTIS-----GLRDR 548
IF ++ + T F + ++ +L T +F PAL + L+ +
Sbjct: 1706 IFKEINEHSTSYT------FRS-EKG---LLSAT-----QFTQPALTLMEKAAFEDLKSK 1750
Query: 549 GQVFVD-----------------------EKLVTILYRNKMLSTPIMARPGQKLSILVEN 585
G + D E LV +++ R G + + V
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF----------YR-GMTMQVAVPR 1799
Query: 586 --MGRINYG 592
+GR NYG
Sbjct: 1800 DELGRSNYG 1808
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside
hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP:
c.1.8.3
Length = 373
Score = 44.5 bits (104), Expect = 1e-04
Identities = 31/206 (15%), Positives = 67/206 (32%), Gaps = 25/206 (12%)
Query: 184 FVKDGKPFRYVSGSFHYFR------SPRYYWQDRLRKLRAAGLNAVSTYV----EWSFHE 233
F +GK + ++ S R + ++ +N T+ +
Sbjct: 14 FALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRPLQ 73
Query: 234 PSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIKPN-ITLR 292
+PG + Q L++ + A + + +++ + FGG ++ L
Sbjct: 74 SAPGVYNEQMFQGLDFVISEAKKYGIHLIM---SLVNNWDAFGGKKQYVEWAVQRGQKLT 130
Query: 293 SKDEVYQHYVN--------KWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTCD--KEH 342
S D+ + + + K IT+ Y + I+ ++ NE + K
Sbjct: 131 SDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRCPSDLSGKTF 190
Query: 343 MIWLRDQMKYYVR-DAAVLYTTDGGG 367
W+ + Y D+ L G
Sbjct: 191 QNWVLEMAGYLKSIDSNHLLEIGLEG 216
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET:
SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A*
2osw_A* 2oyl_A* 2oym_A* 2osy_A*
Length = 481
Score = 42.3 bits (98), Expect = 6e-04
Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 20/144 (13%)
Query: 186 KDGKPFRY----VSGSFHYF--RSPRYYWQDRLRKLRAAGLNAVSTYVEWSFHEPSPGQF 239
DG+ + S P++ D R+ G N V + W EP+PG +
Sbjct: 40 DDGRSLILRGFNTASSAKSAPDGMPQFTEADLAREYADMGTNFVRFLISWRSVEPAPGVY 99
Query: 240 QFTGDQDLEYFLELAVREDLLVLL-------------RPGPYICAERDFGGLPSWLMTIK 286
+E + V+L A G P+W T
Sbjct: 100 DQQYLDRVEDRVGWYAERGYKVMLDMHQDVYSGAITPEGNSGNGAGAIGNGAPAWA-TYM 158
Query: 287 PNITLRSKDEVYQHYVNKWFAQLF 310
+ + + +Y+ + F
Sbjct: 159 DGLPVEPQPRWELYYIQPGVMRAF 182
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea
batatas} SCOP: c.1.8.1
Length = 498
Score = 41.6 bits (97), Expect = 0.001
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 209 QDRLRKLRAAGLNAVSTYVEWSFHEP-SPGQFQFTGDQDLEYFLELAVREDLLVLLRPGP 267
+D L++++A G + V V W E P Q+ ++ ++L +L + L +
Sbjct: 37 EDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYREL---FQLVKKCGLKIQAIMSF 93
Query: 268 YICAERDFG----GLPSWLMTI-KPNITLRSKDE---VYQHYVNKW 305
+ C +P W++ I N + + Q Y++
Sbjct: 94 HQCGGNVGDAVFIPIPQWILQIGDKNPDIFYTNRAGNRNQEYLSLG 139
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC;
1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB:
1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A*
1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Length = 516
Score = 40.5 bits (94), Expect = 0.002
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 208 WQDRLRKLRAAGLNAVSTYVEWSFHEP-SPGQFQFTG-DQDLEYFLELAVREDLLVLLRP 265
+++ LR + G A++ W E QF F+ + + ++ ++
Sbjct: 31 FENDLRWAKQNGFYAITVDFWWGDMEKNGDQQFDFSYAQRFAQSVKNAGMKMIPIISTHQ 90
Query: 266 GPYICAERDFGGLPSWLMTIKPNITLRSKDE 296
+ +PSW+ K + +L K E
Sbjct: 91 CGGNVGDDCNVPIPSWVWNQKSDDSLYFKSE 121
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max}
SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A*
1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A*
2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A
1btc_A*
Length = 495
Score = 39.3 bits (91), Expect = 0.005
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 12/103 (11%)
Query: 212 LRKLRAAGLNAVSTYVEWSFHEP-SPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYIC 270
L +LRAAG++ V V W E P Q+ + + L L+L L + + C
Sbjct: 39 LLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSL---LQLVQECGLTLQAIMSFHQC 95
Query: 271 AERDFGG----LPSWLMTI-KPNITLRSKDE---VYQHYVNKW 305
+P W++ I + N + + + Y+
Sbjct: 96 GGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVG 138
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta
barrel, glycosyl hydrolase, sugar binding, secret
hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A
3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*
Length = 383
Score = 38.7 bits (89), Expect = 0.008
Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 29/214 (13%)
Query: 180 ERDTFVKDGKPFRYVSGSFHYFRSPRYYWQDR-LRKLRAAGLNAVSTYVEWSFHE----- 233
R + + +GK FR++ + +Y D L R G+ + +
Sbjct: 16 PRGSHMLNGKEFRFIGSNNYYMHYKSNRMIDSVLESARDMGIKVLRIWGFLDGESYCRDK 75
Query: 234 -----PSPGQFQFTGD--------QDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPS 280
P PG F + L+Y + A + +++ + DFGG+
Sbjct: 76 NTYMHPEPGVFGVPEGISNAQNGFERLDYTIAKAKELGIKLII---VLVNNWDDFGGMNQ 132
Query: 281 WL--MTIKPNITLRSKDEVYQHYVN--KWFAQLFPRITRFLYGNGGPIILVQVENEMGSY 336
++ + + + + Y + T Y I+ ++ NE+
Sbjct: 133 YVRWFGGTHHDDFYRDERIKEEYKKYVSFLINHVNVYTGVPYREEPTIMAWELANELRCE 192
Query: 337 TCD--KEHMIWLRDQMKYYVR-DAAVLYTTDGGG 367
T + W+++ Y D L G
Sbjct: 193 TDKSGNTLVEWVKEMSSYIKSLDPNHLVAVGDEG 226
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG
MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB:
1qno_A* 1qnq_A* 1qnp_A* 1qns_A*
Length = 344
Score = 37.9 bits (87), Expect = 0.012
Identities = 39/254 (15%), Positives = 78/254 (30%), Gaps = 26/254 (10%)
Query: 184 FVKDGKPFRYVSGSFHYFRSPRYYWQ--DRLRKLRAAGLNAVSTYVEWSF---------- 231
F DGK + + ++ + + ++GL V +
Sbjct: 12 FNIDGKVGYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIW 71
Query: 232 -----HEPSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTIK 286
S G Q L+Y ++ A + +L +++ P++ D+GG+ +++
Sbjct: 72 FQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLII---PFVNNWSDYGGINAYVNAFG 128
Query: 287 PNITLRSKDEVYQHYVNKWFAQLFPRITRFLYGNGGPIILVQVENEMGSYTCDKEHMI-W 345
N T + Q K+ + R Y N I ++ NE C + ++ W
Sbjct: 129 GNATTWYTNTAAQTQYRKYVQAVVSR-----YANSTAIFAWELGNEPRCNGCSTDVIVQW 183
Query: 346 LRDQMKYYVRDAAVLYTTDGGGVGYLKCTVPGVYATVDFGAATNVSSAFAAMRTVSPHGP 405
+Y + T G L T G + ++ + H
Sbjct: 184 ATSVSQYVKSLDSNHLVTLGDEGLGLSTGDGAYPYTYGEGTDFAKNVQIKSLDFGTFHLY 243
Query: 406 LVNSEYYPGWLTHW 419
+ W W
Sbjct: 244 PDSWGTNYTWGNGW 257
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase,
mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio
mixtus} SCOP: c.1.8.3 PDB: 1uz4_A*
Length = 440
Score = 37.3 bits (85), Expect = 0.021
Identities = 30/191 (15%), Positives = 50/191 (26%), Gaps = 35/191 (18%)
Query: 184 FVKDGKPFRYVSGSFHYFR--------SPRYYWQDRLRKLRAAGLNAVSTYVEWSF---- 231
F GKP+ + Y R L L+A G+N +
Sbjct: 32 FELQGKPYVITGVNMWYAAYLGAPNEVGDRDRLAKELDNLKAIGVNNLRVLAVSEKSEIN 91
Query: 232 ------HEPSPGQFQFTGDQDLEYFLELAVREDLLVLLRPGPYICAERDFGGLPSWLMTI 285
G + T Q L+Y L + D+ V+L + +W+
Sbjct: 92 SAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNNFWQWSGGMTQYMAWIEGE 151
Query: 286 KPNITLRSK--------------DEVYQHYVNKWFAQLFPRITRFL---YGNGGPIILVQ 328
+ E Q K ++ R+ Y + I+ Q
Sbjct: 152 PVQDPNVTNEWEAFMAKSASFYRSEKAQQEYRKTLEKIITRVNSINGKAYVDDATIMSWQ 211
Query: 329 VENEMGSYTCD 339
+ NE
Sbjct: 212 LANEPRPGNSQ 222
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta
barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Length = 353
Score = 33.5 bits (76), Expect = 0.28
Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 20/103 (19%)
Query: 180 ERDTFVKDGKPFRYV-----------SGSFHYFRSPRYYWQDRLRKLRAAGLNAV----- 223
+G + + + ++ L +++ G N+V
Sbjct: 8 SGTNLNYNGHHIFLSGANQAWVNYARDFGHNQYSKGKSTFESTLSDMQSHGGNSVRVWLH 67
Query: 224 ---STYVEWSFHEPSPGQFQFTGDQDLEYFLELAVREDLLVLL 263
+ E+ + T D+ +L A R ++L+
Sbjct: 68 IEGESTPEFD-NNGYVTGIDNTLISDMRAYLHAAQRHNILIFF 109
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate
specificity, pectin, GH-A, family 53, plant cell WALL
degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis}
SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A*
2gft_A*
Length = 399
Score = 33.2 bits (75), Expect = 0.36
Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 21/133 (15%)
Query: 209 QDRLRKLRAAGLNAVSTYVEWSFHEPSPGQFQFTGDQDLEYFLELAVRE---DLLVLLRP 265
QD + L+ AG+N V + W+ + G G+ DLE +++ R + +L
Sbjct: 51 QDIFKTLKEAGVNYVRVRI-WNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADF 109
Query: 266 GPYICAERDFGGLPSWLMTIKPNITLRS---KDEVYQHYVNKWFAQLFPRITRFLYGNGG 322
DF P+ K L K +YQ+ + + G
Sbjct: 110 H-----YSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQ---------SLKAMKAAGI 155
Query: 323 PIILVQVENEMGS 335
I +VQV NE
Sbjct: 156 DIGMVQVGNETNG 168
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 31.6 bits (72), Expect = 1.1
Identities = 20/115 (17%), Positives = 30/115 (26%), Gaps = 49/115 (42%)
Query: 603 VYDCGPKHIRSPLVFLPPVSGTADIFFHLMLDLSRKGYRTLSY----------------- 645
V GP+ PLV L ++ +++ + D S YRT +
Sbjct: 59 VIASGPED-APPLVLLHGALFSSTMWYPNIADWSS-KYRTYAVDIIGDKNKSIPENVSGT 116
Query: 646 --------------------------LGGFLAQKFAEHTVLRP-RVVSLFLCNSF 673
LGG F P RV S + +
Sbjct: 117 RTDYANWLLDVFDNLGIEKSHMIGLSLGGLHTMNFLLR---MPERVKSAAILSPA 168
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 31.5 bits (72), Expect = 1.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 614 PLVFLPPVSGTADIFFHLMLDLSRKGYRTLSY 645
P+VF AD + M+ L+ +GYR +++
Sbjct: 21 PIVFSHGWPLNADSWESQMIFLAAQGYRVIAH 52
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 31.2 bits (71), Expect = 1.3
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 614 PLVFLPPVSGTADIFFHLMLDLSRKGYRTLSY 645
P+VF+ D + + + GYR +++
Sbjct: 21 PVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAH 52
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 30.7 bits (70), Expect = 1.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 614 PLVFLPPVSGTADIFFHLMLDLSRKGYRTLSY 645
P++F AD++ + M LS +GYRT+++
Sbjct: 21 PVLFSHGWLLDADMWEYQMEYLSSRGYRTIAF 52
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.5
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 912 EVNRITVLE----LQAP---PSDLKVKFTTE 935
E + L+ L A P+ L +K T E
Sbjct: 18 EKQALKKLQASLKLYADDSAPA-LAIKATME 47
Score = 28.8 bits (63), Expect = 5.0
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 19/47 (40%)
Query: 47 DKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKCTVP--GVYATVD 91
+K+ + L+ +K Y D+A P + AT++
Sbjct: 18 EKQALKKLQASLKLYADDSA-----------------PALAIKATME 47
Score = 28.8 bits (63), Expect = 5.0
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 19/47 (40%)
Query: 339 DKEHMIWLRDQMKYYVRDAAVLYTTDGGGVGYLKCTVP--GVYATVD 383
+K+ + L+ +K Y D+A P + AT++
Sbjct: 18 EKQALKKLQASLKLYADDSA-----------------PALAIKATME 47
Score = 28.4 bits (62), Expect = 6.7
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 11/31 (35%)
Query: 819 KPLSPWSMTQY-PLSNLSWIDTAP--ATNTT 846
K L S+ Y D+AP A T
Sbjct: 23 KKLQA-SLKLYAD-------DSAPALAIKAT 45
>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex,
amido hydrola 9244B, structural genomics, PSI-2; HET:
KCX; 2.62A {Agrobacterium tumefaciens}
Length = 417
Score = 30.1 bits (67), Expect = 3.5
Identities = 13/54 (24%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 559 TILYRNKMLSTPIMARPGQKLSILVENMGRINY-GSYLHDPKGWKVYDCGPKHI 611
IL N IL+ G+I GS L P + D I
Sbjct: 16 PILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFI 69
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 30.1 bits (68), Expect = 3.6
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 614 PLVFLPPVSGTADIFFHLMLDLSRKGYRTLSY 645
P+V + + + + + L GYR ++Y
Sbjct: 29 PVVLIHGWPLSGRSWEYQVPALVEAGYRVITY 60
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 29.5 bits (67), Expect = 4.9
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 603 VYDCGPKHIRSPLVFLPPVSGTADIFFHLMLDLSRKGYRTLSY 645
D GP+ P+VF +AD + + ML GYR +++
Sbjct: 13 YKDWGPRDGL-PVVFHHGWPLSADDWDNQMLFFLSHGYRVIAH 54
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 29.4 bits (66), Expect = 5.9
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 614 PLVFLPPVSGTADIFFHLMLDLSRKGYRTLSY 645
P+V + + + L GYR ++Y
Sbjct: 26 PVVLIHGFPLSGHSWERQSAALLDAGYRVITY 57
>3iz6_C 40S ribosomal protein S9 (S4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 195
Score = 28.9 bits (64), Expect = 6.4
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 497 KVAQTLPPLTSAFPLSFEALDQSFGFVLYETIIPDARFPDPALLTISGLRDRGQVFVDEK 556
A+ L L P + + ++ D + +L ++ F+ +
Sbjct: 56 NNARHLLTLDEKNPRRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVEN-----FLARR 110
Query: 557 LVTILYRNKMLSTPIMAR 574
L T++++ M + AR
Sbjct: 111 LQTLVFKAGMAKSIHHAR 128
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 29.0 bits (65), Expect = 8.8
Identities = 13/53 (24%), Positives = 16/53 (30%), Gaps = 11/53 (20%)
Query: 168 LASVQRKFEIDYERDTFVKDGKPFRYVSGSFHYFRSPRYYWQDRLRKLRAAGL 220
+ +Q EI YER T V G P + R RA
Sbjct: 18 GSHMQMIAEIYYERGTIVVKGDAH-----------VPHAKFDSRSGTYRALAF 59
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 28.8 bits (65), Expect = 8.8
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 614 PLVFLPPVSGTADIFFHLMLDLSRKGYRTLSY 645
P+V + + + L GYR ++Y
Sbjct: 25 PVVLIHGFPLSGHSWERQSAALLDAGYRVITY 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.435
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,178,405
Number of extensions: 944195
Number of successful extensions: 2360
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2308
Number of HSP's successfully gapped: 60
Length of query: 949
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 846
Effective length of database: 3,825,930
Effective search space: 3236736780
Effective search space used: 3236736780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.1 bits)