BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12908
         (148 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
           Structural Basis For Discrimination Between Sumo
           Paralogues During Processing
 pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
           Structural Basis For Discrimination Between Sumo
           Paralogues During Processing
 pdb|2CKH|A Chain A, Senp1-sumo2 Complex
          Length = 225

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 75/135 (55%), Gaps = 32/135 (23%)

Query: 43  RGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAG-PDRGCL-------- 93
           R    VD+FS DILLVPIH+  +HWCLA +DFRKK +TYYDSM G  +  C         
Sbjct: 93  RWTKKVDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQ 151

Query: 94  ---------------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPY 132
                                + +PQQ N SDCG+F   +A+ ++++  I    Q+ MPY
Sbjct: 152 ESIDKKRKEFDTNGWQLFSKKSQIPQQMNGSDCGMFACKYADCITKDRPI-NFTQQHMPY 210

Query: 133 YRKKMMAEILSKKLL 147
           +RK+M+ EIL +KLL
Sbjct: 211 FRKRMVWEILHRKLL 225


>pdb|2IYC|A Chain A, Senp1 Native Structure
 pdb|2IYC|B Chain B, Senp1 Native Structure
 pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
          Length = 226

 Score = 96.7 bits (239), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 20/148 (13%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAG-PDRGCLNVDLFSYDILLVP 59
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G  +  C         ILL  
Sbjct: 98  VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEAC--------RILLQY 148

Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
           +  +       +ID ++K            +    ++PQQ N SDCG+F   +A+ ++++
Sbjct: 149 LKQE-------SIDKKRKEFDTNGWQLFSKKS--QEIPQQMNGSDCGMFACKYADCITKD 199

Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 200 RPI-NFTQQHMPYFRKRMVWEILHRKLL 226


>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
 pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
          Length = 238

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 82/148 (55%), Gaps = 20/148 (13%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAG-PDRGCLNVDLFSYDILLVP 59
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G  +  C         ILL  
Sbjct: 110 VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEAC--------RILLQY 160

Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
           +  + I       D     L    S          ++PQQ N SDCG+F   +A+ ++++
Sbjct: 161 LKQESIDKKRKEFDTNGWQLFSKKS---------QEIPQQMNGSDCGMFACKYADCITKD 211

Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 212 RPI-NFTQQHMPYFRKRMVWEILHRKLL 238


>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
           Structure
 pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
           Structure
          Length = 230

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 20/148 (13%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAG-PDRGCLNVDLFSYDILLVP 59
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G  +  C         ILL  
Sbjct: 102 VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEAC--------RILLQY 152

Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
           +  +       +ID ++K            +    ++PQQ N SDCG+F   +A+ ++++
Sbjct: 153 LKQE-------SIDKKRKEFDTNGWQLFSKKS--QEIPQQMNGSDCGMFACKYADCITKD 203

Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 204 RPI-NFTQQHMPYFRKRMVWEILHRKLL 230


>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
 pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
 pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
          Length = 226

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 20/148 (13%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAG-PDRGCLNVDLFSYDILLVP 59
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G  +  C         ILL  
Sbjct: 98  VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEAC--------RILLQY 148

Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
           +  +       +ID ++K            +    ++PQQ N SD G+F   +A+ ++++
Sbjct: 149 LKQE-------SIDKKRKEFDTNGWQLFSKKS--QEIPQQMNGSDAGMFACKYADCITKD 199

Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 200 RPI-NFTQQHMPYFRKRMVWEILHRKLL 226


>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
           With Sumo-1
 pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
           With Sumo-1
          Length = 205

 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 20/148 (13%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAG-PDRGCLNVDLFSYDILLVP 59
           VD+FS DILLVPIH+  +HWCL  +DFRKK +TYYDSM G  +  C         ILL  
Sbjct: 77  VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEAC--------RILLQY 127

Query: 60  IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
           +  +       +ID ++K            +    ++PQQ N SD G+F   +A+ ++++
Sbjct: 128 LKQE-------SIDKKRKEFDTNGWQLFSKKS--QEIPQQMNGSDSGMFACKYADCITKD 178

Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
             I    Q+ MPY+RK+M+ EIL +KLL
Sbjct: 179 RPI-NFTQQHMPYFRKRMVWEILHRKLL 205


>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
 pdb|1TH0|A Chain A, Structure Of Human Senp2
 pdb|1TH0|B Chain B, Structure Of Human Senp2
          Length = 226

 Score = 89.4 bits (220), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/136 (39%), Positives = 71/136 (52%), Gaps = 33/136 (24%)

Query: 43  RGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMA---------------- 86
           R    V+LF  +I+LVPIH +K+HW L  ID RKKCL Y DSM                 
Sbjct: 93  RWTKGVNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQD 151

Query: 87  ------GPDRGCL---------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMP 131
                   D   L         +++PQQ N SDCG+FT  +A+Y+SR+  I    Q  MP
Sbjct: 152 ESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQHQMP 210

Query: 132 YYRKKMMAEILSKKLL 147
            +RKKM+ EIL ++LL
Sbjct: 211 LFRKKMVWEILHQQLL 226


>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
 pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
 pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
 pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
 pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
           Rangap1-sumo-1
 pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
           Sumo-2
          Length = 232

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 33/136 (24%)

Query: 43  RGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMA---------------- 86
           R    V+LF  +I+LVPIH +K+HW L  ID RKKCL Y DSM                 
Sbjct: 99  RWTKGVNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQD 157

Query: 87  ------GPDRGCL---------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMP 131
                   D   L         +++PQQ N SD G+FT  +A+Y+SR+  I    Q  MP
Sbjct: 158 ESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDSGMFTCKYADYISRDKPI-TFTQHQMP 216

Query: 132 YYRKKMMAEILSKKLL 147
            +RKKM+ EIL ++LL
Sbjct: 217 LFRKKMVWEILHQQLL 232


>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
           Complex With Smt3, The Yeast Ortholog Of Sumo
          Length = 221

 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 24/116 (20%)

Query: 7   DILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMA-GPDRGCLNVDLFSYDILLVPIHVQKI 65
           D +  PI++ + HW L  ID +KK + Y DS++ GP       +  S+ IL         
Sbjct: 102 DKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGP-------NAMSFAIL--------- 145

Query: 66  HWCLATIDFRKKCLTYYDSMAGPDRGCLN-DVPQQQNSSDCGVFTSTFAEYLSRNA 120
                  D +K  +       G D   ++ D PQQ N  DCG++      Y S +A
Sbjct: 146 ------TDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADA 195


>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
           A Sulfenic Acid
 pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
           A Sulfinic Acid
 pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
           A Sulfonic Acid
          Length = 221

 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 24/116 (20%)

Query: 7   DILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMA-GPDRGCLNVDLFSYDILLVPIHVQKI 65
           D +  PI++ + HW L  ID +KK + Y DS++ GP       +  S+ IL         
Sbjct: 102 DKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGP-------NAMSFAIL--------- 145

Query: 66  HWCLATIDFRKKCLTYYDSMAGPDRGCLN-DVPQQQNSSDCGVFTSTFAEYLSRNA 120
                  D +K  +       G D   ++ D PQQ N  D G++      Y S +A
Sbjct: 146 ------TDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDXGIYVCMNTLYGSADA 195


>pdb|2OIX|A Chain A, Xanthomonas Xopd C470a Mutant
          Length = 186

 Score = 34.7 bits (78), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 37  SMAGPDRGCLNVDLFSYD----ILLVPIHVQKIHWCLATIDFRKK---CLTYYDSMAGPD 89
           S A PD+      L + D    I+ +PI+    HW L  +D R K      +YDSMA  D
Sbjct: 42  SSADPDQQARAQRLLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKD 101

Query: 90  RGCLNDVPQQQNSSDCGVF 108
                  PQQ+  +D   +
Sbjct: 102 -------PQQRYLADMAAY 113



 Score = 30.8 bits (68), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 8   ILLVPIHVQKIHWCLTTIDFRKK---CLTYYDSMAGPD 42
           I+ +PI+    HW L  +D R K      +YDSMA  D
Sbjct: 64  IVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKD 101


>pdb|2OIV|A Chain A, Structural Analysis Of Xanthomonas Xopd Provides Insights
           Into Substrate Specificity Of Ubiquitin-Like Protein
           Proteases
          Length = 186

 Score = 34.3 bits (77), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 37  SMAGPDRGCLNVDLFSYD----ILLVPIHVQKIHWCLATIDFRKK---CLTYYDSMAGPD 89
           S A PD+      L + D    I+ +PI+    HW L  +D R K      +YDSMA  D
Sbjct: 42  SSADPDQQARAQRLLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKD 101

Query: 90  RGCLNDVPQQQNSSDCGVF 108
                  PQQ+  +D   +
Sbjct: 102 -------PQQRYLADMAAY 113



 Score = 30.8 bits (68), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 8   ILLVPIHVQKIHWCLTTIDFRKK---CLTYYDSMAGPD 42
           I+ +PI+    HW L  +D R K      +YDSMA  D
Sbjct: 64  IVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKD 101


>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
          Length = 323

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 96  VPQQQNSSDCGVFTSTFAE 114
           VP+Q NSSDCGV+   + E
Sbjct: 256 VPKQDNSSDCGVYLLQYVE 274


>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
           Trp
 pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
           Trp
          Length = 310

 Score = 27.3 bits (59), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 83  DSMAGPD-----RGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
           D + GPD     +  +N  P+    +D G F   F E ++R A
Sbjct: 260 DKLLGPDVMYPMKALINGCPEPLEIADAGHFVQEFGEQVAREA 302


>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
           Interaction Of Haloalkane Dehalogenase With Halide Ions:
           Studies With Halide Compounds Reveal A Halide Binding
           Site In The Active Site
 pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
           Interaction Of Haloalkane Dehalogenase With Halide Ions:
           Studies With Halide Compounds Reveal A Halide Binding
           Site In The Active Site
 pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
           6.2 And Ph 8.2 And Implications For The Reaction
           Mechanism
 pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
           Haloalkane Dehalogenase
 pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
           Haloalkane Dehalogenase
 pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
           Interaction Of Haloalkane Dehalogenase With Halide Ions:
           Studies With Halide Compounds Reveal A Halide Binding
           Site In The Active Site
 pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
           Interaction Of Haloalkane Dehalogenase With Halide Ions:
           Studies With Halide Compounds Reveal A Halide Binding
           Site In The Active Site
 pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
           Detoxify Halogenated Alkanes
 pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
           Resolution Comparison Of Hydrogenous And Perdeuterated
           Haloalkane Dehalogenase
 pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
           Resolution Comparison Of Hydrogenous And Perdeuterated
           Haloalkane Dehalogenase
          Length = 310

 Score = 27.3 bits (59), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 83  DSMAGPD-----RGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
           D + GPD     +  +N  P+    +D G F   F E ++R A
Sbjct: 260 DKLLGPDVMYPMKALINGCPEPLEIADAGHFVQEFGEQVAREA 302


>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
          Length = 310

 Score = 27.3 bits (59), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 83  DSMAGPD-----RGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
           D + GPD     +  +N  P+    +D G F   F E ++R A
Sbjct: 260 DKLLGPDVMYPMKALINGCPEPLEIADAGHFVQEFGEQVAREA 302


>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
           Haloalkane Dehalogenase
          Length = 310

 Score = 27.3 bits (59), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 83  DSMAGPD-----RGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
           D + GPD     +  +N  P+    +D G F   F E ++R A
Sbjct: 260 DKLLGPDVMYPMKALINGCPEPLEIADAGHFVQEFGEQVAREA 302


>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
           Bromide
 pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
          Length = 310

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 83  DSMAGPD-----RGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
           D + GPD     +  +N  P+    +D G F   F E ++R A
Sbjct: 260 DKLLGPDVMYPMKALINGCPEPLEIADAGHFVQEFGEQVAREA 302


>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
           Tyr
 pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
           Tyr At Ph 5
          Length = 310

 Score = 27.3 bits (59), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 83  DSMAGPD-----RGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
           D + GPD     +  +N  P+    +D G F   F E ++R A
Sbjct: 260 DKLLGPDVMYPMKALINGCPEPLEIADAGHFVQEFGEQVAREA 302


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,396,011
Number of Sequences: 62578
Number of extensions: 165453
Number of successful extensions: 500
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 36
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)