BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12908
(148 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 55/138 (39%), Positives = 77/138 (55%), Gaps = 31/138 (22%)
Query: 39 AGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPD-------RG 91
A R VD+F++DI+LVP+H+ +HWC+A ID +K + +YDS+ + RG
Sbjct: 559 ASVKRWTRKVDIFAFDIVLVPVHL-GMHWCMAVIDMGEKKIEFYDSLYDGNTAVLPALRG 617
Query: 92 CL----------------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKD 129
L D+P+QQN SDCGVF+ F E+ SR + QK+
Sbjct: 618 YLEAESLDKKKTAMNFSGWTIQQMTDIPRQQNGSDCGVFSCQFGEWASRRTTP-RFTQKN 676
Query: 130 MPYYRKKMMAEILSKKLL 147
MPYYRK+M+ EI+SKKLL
Sbjct: 677 MPYYRKRMVYEIVSKKLL 694
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 58/153 (37%), Positives = 84/153 (54%), Gaps = 30/153 (19%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
VD+FS DILLVPIH+ +HWCL +DFR+K +TYYDSM G ++ + ILL +
Sbjct: 512 VDVFSVDILLVPIHL-GVHWCLAVVDFRRKSITYYDSMGG-------INNEACRILLQYL 563
Query: 61 HVQKIHWCLATID------FRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAE 114
+ + D F KK ++PQQ N SDCG+F +A+
Sbjct: 564 KQESVDKKRKEFDTNGWQLFSKKS---------------QEIPQQMNGSDCGMFACKYAD 608
Query: 115 YLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
++++ I Q+ MPY+RK+M+ EIL +KLL
Sbjct: 609 CITKDRPI-NFTQQHMPYFRKRMVWEILHRKLL 640
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 99.8 bits (247), Expect = 5e-21, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 30/153 (19%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
VD+FS DILLVPIH+ +HWCL +DFRKK +TYYDSM G ++ + ILL +
Sbjct: 516 VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGG-------INNEACRILLQYL 567
Query: 61 HVQKIHWCLATID------FRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAE 114
+ I D F KK ++PQQ N SDCG+F +A+
Sbjct: 568 KQESIDKKRKEFDTNGWQLFSKKS---------------QEIPQQMNGSDCGMFACKYAD 612
Query: 115 YLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
++++ I Q+ MPY+RK+M+ EIL +KLL
Sbjct: 613 CITKDRPI-NFTQQHMPYFRKRMVWEILHRKLL 644
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 99.8 bits (247), Expect = 5e-21, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 30/153 (19%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
VD+FS DILLVPIH+ +HWCL +DFRKK +TYYDSM G ++ + ILL +
Sbjct: 517 VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGG-------INNEACRILLQYL 568
Query: 61 HVQKIHWCLATID------FRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAE 114
+ I D F KK ++PQQ N SDCG+F +A+
Sbjct: 569 KQESIDKKRKEFDTNGWQLFSKKS---------------QEIPQQMNGSDCGMFACKYAD 613
Query: 115 YLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
++++ I Q+ MPY+RK+M+ EIL +KLL
Sbjct: 614 CITKDRPI-NFTQQHMPYFRKRMVWEILHRKLL 645
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 33/131 (25%)
Query: 48 VDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGP-DRGC-------------- 92
V+LF +I+LVPIH +K+HW L ID RKKCL Y DSM R C
Sbjct: 461 VNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTK 519
Query: 93 ----LN------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKK 136
LN ++PQQ N SDCG+FT +A+Y+SR+ I Q MP +RKK
Sbjct: 520 RNIDLNLLEWTHYSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQHQMPLFRKK 578
Query: 137 MMAEILSKKLL 147
M+ EIL ++LL
Sbjct: 579 MVWEILHQQLL 589
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 94.4 bits (233), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 71/131 (54%), Gaps = 33/131 (25%)
Query: 48 VDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGP-DRGC-------------- 92
V+LF +I+LVPIH +K+HW L ID RKKCL Y DSM R C
Sbjct: 461 VNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTK 519
Query: 93 ----LN------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKK 136
LN ++PQQ N SDCG+FT +A+Y+SR+ I Q MP +RKK
Sbjct: 520 RNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQHQMPLFRKK 578
Query: 137 MMAEILSKKLL 147
M+ EIL ++LL
Sbjct: 579 MVWEILHQQLL 589
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 93.2 bits (230), Expect = 5e-19, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 20/148 (13%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGP-DRGCLNVDLFSYDILLVP 59
V+LF +++LVPIH +K+HW L +D RKKCL Y DSM R C +ILL
Sbjct: 460 VNLFEQELVLVPIH-RKVHWSLVVMDLRKKCLKYLDSMGQKGHRIC--------EILLQ- 509
Query: 60 IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
++Q D T+Y SM +++PQQ N SDCG+FT +A+Y+SR+
Sbjct: 510 -YLQDESKTKRNTDLNLLEWTHY-SMKP------HEIPQQLNGSDCGMFTCKYADYISRD 561
Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
I Q MP +RKKM+ EIL ++LL
Sbjct: 562 KPI-TFTQHQMPLFRKKMVWEILHQQLL 588
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 93.2 bits (230), Expect = 5e-19, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 83/148 (56%), Gaps = 20/148 (13%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGP-DRGCLNVDLFSYDILLVP 59
V+LF +++LVPIH +K+HW L +D RKKCL Y DSM R C +ILL
Sbjct: 460 VNLFDQELVLVPIH-RKVHWSLVVMDLRKKCLKYLDSMGQKGHRIC--------EILLQ- 509
Query: 60 IHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
++Q D T+Y SM +++PQQ N SDCG+FT +A+Y+SR+
Sbjct: 510 -YLQDESKTKRNTDLNLLEWTHY-SMKP------HEIPQQLNGSDCGMFTCKYADYISRD 561
Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKLL 147
I Q MP +RKKM+ EIL ++LL
Sbjct: 562 KPI-TFTQHQMPLFRKKMVWEILHQQLL 588
>sp|Q9EP97|SENP3_MOUSE Sentrin-specific protease 3 OS=Mus musculus GN=Senp3 PE=1 SV=1
Length = 568
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 21/146 (14%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
VD+F+ ++LL+PIH++ +HW L ++D R++ +TY+DS +R C P
Sbjct: 442 VDIFNKELLLIPIHLE-VHWSLISVDVRRRTITYFDSQRTLNRRC-------------PK 487
Query: 61 HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
H+ K L +K L ++ G + +V +Q N SDCG F + ++L+ +
Sbjct: 488 HIAKY---LQAEAVKKDRLDFHQGWKGYFK---MNVARQNNDSDCGAFVLQYCKHLALSQ 541
Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKL 146
F Q+DMP R+++ E+ KL
Sbjct: 542 P-FSFTQQDMPKLRRQIYKELCHCKL 566
>sp|Q9H4L4|SENP3_HUMAN Sentrin-specific protease 3 OS=Homo sapiens GN=SENP3 PE=1 SV=2
Length = 574
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 21/146 (14%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
VD+F+ ++LL+PIH++ +HW L ++D R++ +TY+DS +R C P
Sbjct: 448 VDIFNKELLLIPIHLE-VHWSLISVDVRRRTITYFDSQRTLNRRC-------------PK 493
Query: 61 HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
H+ K L +K L ++ G + +V +Q N SDCG F + ++L+ +
Sbjct: 494 HIAKY---LQAEAVKKDRLDFHQGWKGYFK---MNVARQNNDSDCGAFVLQYCKHLALSQ 547
Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKL 146
F Q+DMP R+++ E+ KL
Sbjct: 548 P-FSFTQQDMPKLRRQIYKELCHCKL 572
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2
SV=1
Length = 755
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 33/153 (21%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
VDLF +LL+PIH++ +HW L T+ + +++YDS
Sbjct: 629 VDLFKKSLLLIPIHLE-VHWSLITVTLSNRIISFYDS----------------------- 664
Query: 61 HVQKIHWCLATIDFRKKCLTYYDSMAGPD------RGCLNDVPQQQNSSDCGVFTSTFAE 114
Q IH+ + RK LT P+ +PQQ+N SDCGVF + +
Sbjct: 665 --QGIHFKFCVENIRKYLLTEAREKNRPEFLQGWQTAVTKCIPQQKNDSDCGVFVLQYCK 722
Query: 115 YLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
L+ F+ Q+DMP RK++ E+ +L+
Sbjct: 723 CLALEQP-FQFSQEDMPRVRKRIYKELCECRLM 754
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3
Length = 755
Score = 69.3 bits (168), Expect = 9e-12, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 33/153 (21%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
VDLF +LL+PIH++ +HW L T+ + +++YDS
Sbjct: 629 VDLFKKSLLLIPIHLE-VHWSLITVTLSNRIISFYDS----------------------- 664
Query: 61 HVQKIHWCLATIDFRKKCLTYYDSMAGPD------RGCLNDVPQQQNSSDCGVFTSTFAE 114
Q IH+ + RK LT P+ +PQQ+N SDCGVF + +
Sbjct: 665 --QGIHFKFCVENIRKYLLTEAREKNRPEFLQGWQTAVTKCIPQQKNDSDCGVFVLQYCK 722
Query: 115 YLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
L+ F+ Q+DMP RK++ E+ +L+
Sbjct: 723 CLALEQP-FQFSQEDMPRVRKRIYKELCECRLM 754
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1
Length = 568
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 27/124 (21%)
Query: 48 VDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGP---------------DRGC 92
V++ D + +P+H+ +HWC+A I+ KK Y+DS+AG +G
Sbjct: 446 VNIADMDAVFIPVHLD-VHWCMAVINKSKKRFEYWDSLAGSPGKVFDLLRDYYIAETKGA 504
Query: 93 L----------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEIL 142
+ ++ P+Q+N DCGVF AE +SRN + + Q DMP R KM A I+
Sbjct: 505 VDVSDWENFMDDNSPRQRNGHDCGVFACKTAECVSRNVPV-QFSQNDMPELRIKMAASII 563
Query: 143 SKKL 146
++
Sbjct: 564 DAQI 567
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1
Length = 749
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 33/153 (21%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
VDLF +LL+PIH++ +HW L T+ + +++YDS
Sbjct: 623 VDLFKKSLLLIPIHLE-VHWSLITVTLSSRIISFYDS----------------------- 658
Query: 61 HVQKIHWCLATIDFRKKCLTYYDSMAGPD--RGCLNDV----PQQQNSSDCGVFTSTFAE 114
Q IH+ + RK LT P+ +G V PQQ+N SDCGVF + +
Sbjct: 659 --QGIHFKFCVENIRKYLLTEAREKNRPEFLQGWQTAVTKCIPQQKNDSDCGVFVLQYCK 716
Query: 115 YLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
L+ F+ Q+DMP RK++ E+ +LL
Sbjct: 717 CLALEQP-FQFSQEDMPRVRKRIYKELCECRLL 748
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 32/127 (25%)
Query: 46 LNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSM-AGPDRGCLN---------- 94
L DL DI+ VPIH+ IHW L I+ R++ Y DS+ G LN
Sbjct: 212 LGYDLIDCDIIFVPIHID-IHWTLGVINNRERKFVYLDSLFTGVGHTILNAMAKYLVDEV 270
Query: 95 -------------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRK 135
+ PQQQN DCG+F + ++ SR + + QKDMPY+R
Sbjct: 271 KQKSQKNIDVSSWGMEYVEERPQQQNGYDCGMFMLKYIDFYSRGLSL-QFSQKDMPYFRL 329
Query: 136 KMMAEIL 142
+ EIL
Sbjct: 330 RTAKEIL 336
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 31/126 (24%)
Query: 46 LNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN----------- 94
L L D++ VPIH + +HW LA I+ R+ L Y DS+ G D LN
Sbjct: 361 LGYALIDCDMIFVPIH-RGVHWTLAVINNRESKLLYLDSLNGVDPMILNALAKYMGDEAN 419
Query: 95 ------------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKK 136
D+PQQ+N DCG+F + ++ SR + Q+ MPY+R +
Sbjct: 420 EKSGKKIDANSWDMEFVEDLPQQKNGYDCGMFMLKYIDFFSRGLGLC-FSQEHMPYFRLR 478
Query: 137 MMAEIL 142
EIL
Sbjct: 479 TAKEIL 484
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 31/121 (25%)
Query: 54 DILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN------------------- 94
D + +PIH+ IHW LA I+ + + Y DS G + L+
Sbjct: 382 DKIFIPIHMN-IHWTLAVINIKDQKFQYLDSFKGREPKILDALARYFVDEVRDKSEVDLD 440
Query: 95 ----------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSK 144
D+P Q+N DCG+F + ++ SR D+ Q+ MPY+R + EIL
Sbjct: 441 VSRWRQEFVQDLPMQRNGFDCGMFMVKYIDFYSRGLDLC-FTQEQMPYFRARTAKEILQL 499
Query: 145 K 145
K
Sbjct: 500 K 500
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 25/142 (17%)
Query: 7 DILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMA-GPDRGCLNVDLFSYDILLVPIHVQKI 65
D + PI++ + HW L ID +KK + Y DS++ GP+ S+ IL
Sbjct: 502 DKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNA-------MSFAIL--------- 545
Query: 66 HWCLATIDFRKKCLTYYDSMAGPDRGCLN-DVPQQQNSSDCGVFTSTFAEYLSRNADIFK 124
D +K + G D ++ D PQQ N DCG++ Y S +A +
Sbjct: 546 ------TDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPL-D 598
Query: 125 IKQKDMPYYRKKMMAEILSKKL 146
KD R+ + IL+ L
Sbjct: 599 FDYKDAIRMRRFIAHLILTDAL 620
>sp|Q0WKV8|ULP2A_ARATH Probable ubiquitin-like-specific protease 2A OS=Arabidopsis
thaliana GN=ULP2A PE=2 SV=2
Length = 774
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 30/122 (24%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTI-------------DFRKKCLTYYDSMAGPDRGCLN 47
VDLF D + +PI+ HW L I R C+ + DS+ G +G L
Sbjct: 383 VDLFEKDYIFIPINCS-FHWSLVIICHPGELVPSHVENPQRVPCILHLDSIKGSHKGGL- 440
Query: 48 VDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN-DVPQQQNSSDCG 106
I + P ++++ W + T DS P+ ++ ++PQQ+NS DCG
Sbjct: 441 -------INIFPSYLRE-EWKARHEN------TTNDSSRAPNMQSISLELPQQENSFDCG 486
Query: 107 VF 108
+F
Sbjct: 487 LF 488
>sp|Q9GZR1|SENP6_HUMAN Sentrin-specific protease 6 OS=Homo sapiens GN=SENP6 PE=1 SV=2
Length = 1112
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 19 HWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKC 78
W L ++ C+ DS+ GP R NV + L V V+K + F K
Sbjct: 960 QWHLKPTICKQPCILLMDSLRGPSRS--NVVKILREYLEVEWEVKK----GSKRSFSK-- 1011
Query: 79 LTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
D M G + VPQQ N SDCGV+ + E N
Sbjct: 1012 ----DVMKGSN----PKVPQQNNFSDCGVYVLQYVESFFEN 1044
>sp|Q6P7W0|SENP6_MOUSE Sentrin-specific protease 6 OS=Mus musculus GN=Senp6 PE=1 SV=3
Length = 1132
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 19 HWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKC 78
W L ++ C+ DS+ GP R NV + L V V+K + F K
Sbjct: 979 QWHLKPTVCKQPCILLMDSLRGPSRS--NVVKILREYLEVEWEVKK----GSKRSFSK-- 1030
Query: 79 LTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
D M G + VPQQ N SDCGV+ + E N
Sbjct: 1031 ----DVMKGSN----PKVPQQNNFSDCGVYVLQYVESFFEN 1063
>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2
Length = 638
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 90 RGCLNDVPQQQNSSDCGVFTSTFAE 114
RG VPQQ N SDCG++ F E
Sbjct: 529 RGFHAKVPQQSNFSDCGIYALHFVE 553
>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana
GN=ULP1D PE=1 SV=1
Length = 584
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 43/157 (27%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKK------CLTYYDSMAGPDRGC--------- 45
+DLF + +PIH + +HW L + K + + DS+ R
Sbjct: 421 IDLFRKAYIFIPIH-EDLHWSLVIVCIPDKKDESGLTILHLDSLGLHSRKSIVENVKRFL 479
Query: 46 ------LNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQ 99
LN D +S D+ PI +K+ W K L S A + VPQQ
Sbjct: 480 KDEWNYLNQDDYSLDL---PIS-EKV-W---------KNLPRRISEA------VVQVPQQ 519
Query: 100 QNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKK 136
+N DCG F F + A ++K+KD+ + KK
Sbjct: 520 KNDFDCGPFVLFFIKRFIEEAPQ-RLKRKDLGMFDKK 555
>sp|O93436|STAM2_CHICK Signal transducing adapter molecule 2 OS=Gallus gallus GN=STAM2
PE=1 SV=1
Length = 468
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 87 GPDR-GCLNDVPQQQNSSDCGVFTST 111
GPD+ G L +PQ NSSDC ++T +
Sbjct: 419 GPDQMGQLRSLPQNINSSDCNLYTKS 444
>sp|P40537|ULP2_YEAST Ubiquitin-like-specific protease 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP2 PE=1 SV=1
Length = 1034
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 24/160 (15%)
Query: 2 DLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI- 60
DLFS +++PI++ HW I L ++ + D +N D S + LV I
Sbjct: 515 DLFSKKYVVIPINIS-YHWFSCIITNLDAILDFHQNKDKND--AINSDEISINNPLVNIL 571
Query: 61 ---HVQKIHWCLATIDFRKKCLTYY---------DSMAGPDRGCLNDVPQQQNSSDCGVF 108
+++ H ID K+ L Y D + C VPQQ N SDCGV
Sbjct: 572 TFDSLRQTH--SREIDPIKEFLISYALDKYSIQLDKTQIKMKTC--PVPQQPNMSDCGVH 627
Query: 109 T----STFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSK 144
F E D++K + ++ KM+ + K
Sbjct: 628 VILNIRKFFENPVETIDVWKNSKIKSKHFTAKMINKYFDK 667
>sp|Q9LSS7|RUBP1_ARATH NEDD8-specific protease 1 OS=Arabidopsis thaliana GN=NEDP1 PE=2
SV=1
Length = 226
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 41/142 (28%)
Query: 48 VDLFSYDILLVPIHVQK--------IHWCLATIDFRKKCLTYYDSMAGPDRGCL------ 93
++L D+L++P++ +HW L ++DS G +R
Sbjct: 80 LNLRDKDLLILPVNDNSNVEVAEGGLHWSLLVYYKEANTFVHHDSYMGVNRWSAKQLFKA 139
Query: 94 ---------------NDVPQQQNSSDCGVFTSTFA----EYLS------RNADIFKIKQK 128
D PQQ+N DCGVF A E+ S R+ F ++
Sbjct: 140 VSPFVSNGDASYKECTDTPQQKNGYDCGVFLLATARVICEWFSSGGMKNRDELWFANVKE 199
Query: 129 DMPYYRKKMMAEILS--KKLLT 148
+P + EIL+ KKL++
Sbjct: 200 TVPDLVNHLREEILALIKKLMS 221
>sp|Q9KDV3|GALE_BACHD UDP-glucose 4-epimerase OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=galE PE=3
SV=1
Length = 334
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 19 HWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKC 78
HWC + CL Y+++ G + D S + L+PI +Q + R++
Sbjct: 152 HWCQEAYGLQYVCLRYFNAAGADPNGRIGED-HSPESHLIPIVLQ------VALGQRERV 204
Query: 79 LTYYDSMAGPDRGCLND 95
+ D D C+ D
Sbjct: 205 AIFGDDYQTEDGSCIRD 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.141 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,855,665
Number of Sequences: 539616
Number of extensions: 2111830
Number of successful extensions: 4228
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4113
Number of HSP's gapped (non-prelim): 55
length of query: 148
length of database: 191,569,459
effective HSP length: 106
effective length of query: 42
effective length of database: 134,370,163
effective search space: 5643546846
effective search space used: 5643546846
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)