Query psy12908
Match_columns 148
No_of_seqs 176 out of 1191
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 22:50:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 100.0 1.6E-37 5.6E-42 238.2 10.0 124 19-147 72-226 (226)
2 2xph_A Sentrin-specific protea 100.0 2.7E-37 9.1E-42 238.7 8.7 124 19-147 84-238 (238)
3 1euv_A ULP1 protease; SUMO hyd 100.0 2.5E-35 8.5E-40 225.4 9.4 123 20-146 69-220 (221)
4 2bkr_A Sentrin-specific protea 100.0 1.7E-31 5.8E-36 202.8 1.9 121 17-143 50-208 (212)
5 3eay_A Sentrin-specific protea 100.0 3.5E-30 1.2E-34 206.0 7.5 125 17-143 73-312 (323)
6 2oix_A Xanthomonas outer prote 99.9 5.5E-29 1.9E-33 185.9 1.8 121 18-144 30-181 (186)
7 4ekf_A Adenain; alpha and beta 97.4 0.00028 9.6E-09 51.9 5.6 57 63-119 51-136 (204)
8 3eay_A Sentrin-specific protea 92.7 0.062 2.1E-06 42.7 2.8 30 1-31 116-145 (323)
9 1euv_A ULP1 protease; SUMO hyd 88.0 0.33 1.1E-05 36.0 3.0 38 1-38 96-133 (221)
10 2bkr_A Sentrin-specific protea 87.5 0.35 1.2E-05 35.5 2.8 40 1-40 78-123 (212)
11 2xph_A Sentrin-specific protea 86.6 0.42 1.4E-05 35.8 2.9 37 1-38 110-146 (238)
12 1th0_A SMT3-, sentrin-specific 83.0 0.76 2.6E-05 34.1 2.8 37 1-38 98-134 (226)
13 2oix_A Xanthomonas outer prote 80.3 0.76 2.6E-05 33.2 1.9 35 6-40 62-99 (186)
14 3k8u_A Putative ABC transporte 21.2 68 0.0023 21.5 2.8 25 97-122 9-33 (156)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=1.6e-37 Score=238.16 Aligned_cols=124 Identities=44% Similarity=0.747 Sum_probs=114.2
Q ss_pred EEEEEeeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCccc------
Q psy12908 19 HWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGC------ 92 (148)
Q Consensus 19 ~~~~~tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~------ 92 (148)
.++||||||++|.. .|++++++|+++.+++++++|++|||. ++||+|++||++++++.+||||++.+...
T Consensus 72 ~~~f~s~f~~~l~~---~~~~~v~~w~~~~~l~~~~~i~iPin~-~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~l~~ 147 (226)
T 1th0_A 72 LHVFSTFFYPKLKS---GGYQAVKRWTKGVNLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQ 147 (226)
T ss_dssp EEECCTTHHHHHHH---HTGGGTGGGGTTCCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHH
T ss_pred EEEEeHHHHHHhhh---cccHHHHHHhhcCCcccCCEEEEeEEe-CcEEEEEEEEcCCCceEEEcCCCCCchHHHHHHHH
Confidence 45699999999998 578899999999999999999999999 99999999999999999999999875321
Q ss_pred -------------------------cccCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCcC
Q psy12908 93 -------------------------LNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147 (148)
Q Consensus 93 -------------------------~~~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l~ 147 (148)
..++|||.||+|||||||+||++++.|.++ +|+|++|+.+|++|+.||++++||
T Consensus 148 ~l~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~-~f~q~dm~~~R~~~~~ei~~~~l~ 226 (226)
T 1th0_A 148 YLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPI-TFTQHQMPLFRKKMVWEILHQQLL 226 (226)
T ss_dssp HHHHHHHHHTSCCCCGGGCEEEECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCC-CCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcCCCCCcccceeccccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCC-ccChhhHHHHHHHHHHHHHhCCcC
Confidence 127999999999999999999999999999 999999999999999999999997
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=2.7e-37 Score=238.68 Aligned_cols=124 Identities=46% Similarity=0.826 Sum_probs=114.2
Q ss_pred EEEEEeeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCccc------
Q psy12908 19 HWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGC------ 92 (148)
Q Consensus 19 ~~~~~tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~------ 92 (148)
.+++|||||++|.. .||+++++|+++.++++++++++|||. ++||+|++||.+++++.+||||++.+...
T Consensus 84 ~~~f~sff~~~l~~---~~~~~v~~w~~~~~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~~DSl~~~~~~~~~~l~~ 159 (238)
T 2xph_A 84 VHAFNTFFFTKLKT---AGYQAVKRWTKKVDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQ 159 (238)
T ss_dssp EEECCTTTTHHHHT---TCHHHHTTTTTTCCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCCCCHHHHHHHHH
T ss_pred eeeeecHHHHHhhh---cccHHHHHHhccCCcccCCEEEEcccC-CCceEEEEEEcccceEEEeecccCCCHHHHHHHHH
Confidence 34699999999998 678899999999999999999999999 79999999999999999999999875321
Q ss_pred -------------------------cccCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCcC
Q psy12908 93 -------------------------LNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147 (148)
Q Consensus 93 -------------------------~~~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l~ 147 (148)
..++|||.||+|||||||+||++++.+.++ +|+|++|+.+|++|+.||++++||
T Consensus 160 ~L~~e~~~k~~~~~~~~~w~~~~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~-~f~q~dm~~~R~~m~~eil~~~ll 238 (238)
T 2xph_A 160 YLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDCGMFACKYADCITKDRPI-NFTQQHMPYFRKRMVWEILHRKLL 238 (238)
T ss_dssp HHHHHHHHHHCSCCCCTTCEEEECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCC-CCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcCCCcCcccceecccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCC-CcChhhHHHHHHHHHHHHHhCCCC
Confidence 127999999999999999999999999998 999999999999999999999997
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=2.5e-35 Score=225.42 Aligned_cols=123 Identities=27% Similarity=0.438 Sum_probs=111.1
Q ss_pred EEEEeeeecchhhhccCCCCCCCCCcc--ccCccCCCEEEEeEEecCceEEEEEEcccCCeeEEecCCCCCCcc----cc
Q psy12908 20 WCLTTIDFRKKCLTYYDSMAGPDRGCL--NVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRG----CL 93 (148)
Q Consensus 20 ~~~~tff~~~L~~~~~~~~~~~~~w~~--~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i~~~DSl~~~~~~----~~ 93 (148)
++|+||||++|.. .||++++||++ +.++++++++++|||.+++||+|++||++++++.+||||++.... .+
T Consensus 69 ~~f~s~f~~~l~~---~~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~~~~i~ 145 (221)
T 1euv_A 69 VAFNSFFYTNLSE---RGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAIL 145 (221)
T ss_dssp EECCTHHHHHHHH---HTGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHHHHHHH
T ss_pred EEEEcHHHHHhhh---hccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCCCcchHHHHH
Confidence 4599999999998 67889999998 579999999999999977999999999999999999999864321 00
Q ss_pred -----------------------ccCCCCCCCCCchHHHHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHhCCc
Q psy12908 94 -----------------------NDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMAEILSKKL 146 (148)
Q Consensus 94 -----------------------~~~p~Q~n~~DCGvfv~~~~~~~~~~~~~~~~~~~~~~~~R~~i~~~ll~~~l 146 (148)
.++|||.||+|||||||+||++++.|.++ +|++++|+.+|++|+.+|++++|
T Consensus 146 ~~l~~~l~~e~~~~~~~~~~~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l-~f~~~d~~~~R~~i~~~Il~~~l 220 (221)
T 1euv_A 146 TDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADAPL-DFDYKDAIRMRRFIAHLILTDAL 220 (221)
T ss_dssp HHHHHHHHHHTTSSSCTTCEEEEECCCCCSSSSTHHHHHHHHHHHHHTTCCC-CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCCCceEeecCCCCCCCCcCHHHHHHHHHHHHhCCCCC-CcCHHHHHHHHHHHHHHHHhccC
Confidence 08999999999999999999999999999 99999999999999999999886
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.96 E-value=1.7e-31 Score=202.75 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=102.5
Q ss_pred ceEEEEE---eeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEe------cCceEEEEEEcccCCeeEEecCCCC
Q psy12908 17 KIHWCLT---TIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHV------QKIHWCLATIDFRKKCLTYYDSMAG 87 (148)
Q Consensus 17 ~~~~~~~---tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~------~~~HW~l~~v~~~~~~i~~~DSl~~ 87 (148)
+. ++++ |||+..+. +++++++|+++.+++++++|++|||. +++||+|++|+++++++.+||||++
T Consensus 50 ~~-~~~~p~~s~f~~~~~-----~~~~v~~~~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~ 123 (212)
T 2bkr_A 50 HV-SFISPEVTQFIKCTS-----NPAEIAMFLEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSR 123 (212)
T ss_dssp TE-EEECHHHHHHHHHCC-----CHHHHHHHHGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTT
T ss_pred cE-EEEChHHHHHHHhCC-----CHHHHHHHhcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCC
Confidence 44 4599 99995543 24579999999999999999999996 5899999999999999999999998
Q ss_pred CCcccc----------------------ccCCCCCCCCCchHHHHHHHHHHhcCC----CC---CCCCCCChHHHHHHHH
Q psy12908 88 PDRGCL----------------------NDVPQQQNSSDCGVFTSTFAEYLSRNA----DI---FKIKQKDMPYYRKKMM 138 (148)
Q Consensus 88 ~~~~~~----------------------~~~p~Q~n~~DCGvfv~~~~~~~~~~~----~~---~~~~~~~~~~~R~~i~ 138 (148)
.+...+ .++|||.||+|||||||+||++++.+. +. ..+++++++.+|++|+
T Consensus 124 ~n~~~~~~l~~~l~~~l~~~~~~~~~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~ 203 (212)
T 2bkr_A 124 SNSVHAKQVAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWK 203 (212)
T ss_dssp TTHHHHHHHHHHHHHHHSCTTCCCCEEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCccccceEeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHH
Confidence 765321 189999999999999999999999875 11 2688999999999999
Q ss_pred HHHHh
Q psy12908 139 AEILS 143 (148)
Q Consensus 139 ~~ll~ 143 (148)
..|.+
T Consensus 204 ~lI~~ 208 (212)
T 2bkr_A 204 DLIAT 208 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 5
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=99.96 E-value=3.5e-30 Score=206.02 Aligned_cols=125 Identities=22% Similarity=0.389 Sum_probs=102.8
Q ss_pred ceEEEEEeeeecchhhhcc-------------CCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccC-------
Q psy12908 17 KIHWCLTTIDFRKKCLTYY-------------DSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRK------- 76 (148)
Q Consensus 17 ~~~~~~~tff~~~L~~~~~-------------~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~------- 76 (148)
++| +||||||++|...+. .+|++|+||++++|||++++|+||||. +.||+|++|+.+.
T Consensus 73 r~h-~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~-~~HW~LaVI~~P~~~~~~~~ 150 (323)
T 3eay_A 73 RSH-IFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNE-SSHWYLAVICFPWLEEAVYE 150 (323)
T ss_dssp TEE-ECCTHHHHHHSCC--------CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEE-TTEEEEEEEECTTCSSCBCC
T ss_pred cEE-EEchHHHHHHHhcccccccccccchhHHHHHHHHHHHHhhcccccCCEEEEecCC-CCceEEEEEecCCccccccc
Confidence 455 699999999987431 257899999999999999999999999 9999999999863
Q ss_pred -------------------------------------------------------CeeEEecCCCCCCc-cccc------
Q psy12908 77 -------------------------------------------------------KCLTYYDSMAGPDR-GCLN------ 94 (148)
Q Consensus 77 -------------------------------------------------------~~i~~~DSl~~~~~-~~~~------ 94 (148)
.+|.+||||++... ..++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL 230 (323)
T 3eay_A 151 DFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYL 230 (323)
T ss_dssp -------------------------------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHH
Confidence 15899999998642 1110
Q ss_pred ------------------------cCCCCCCCCCchHHHHHHHHHHhcCCCC---------CCCCCCChHHHHHHHHHHH
Q psy12908 95 ------------------------DVPQQQNSSDCGVFTSTFAEYLSRNADI---------FKIKQKDMPYYRKKMMAEI 141 (148)
Q Consensus 95 ------------------------~~p~Q~n~~DCGvfv~~~~~~~~~~~~~---------~~~~~~~~~~~R~~i~~~l 141 (148)
.+|+|.|++|||+|||+|+++++.+.+. .+|++.++...|..|..-|
T Consensus 231 ~~E~~~k~~~~~~f~~~~~~~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI 310 (323)
T 3eay_A 231 EVEWEVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELI 310 (323)
T ss_dssp HHHHHHHHSSCCCCCTTTSCEECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCCHhHceeccCCCCCcCCCCcHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999998765 1466778899999998766
Q ss_pred Hh
Q psy12908 142 LS 143 (148)
Q Consensus 142 l~ 143 (148)
.+
T Consensus 311 ~~ 312 (323)
T 3eay_A 311 LK 312 (323)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.94 E-value=5.5e-29 Score=185.90 Aligned_cols=121 Identities=22% Similarity=0.200 Sum_probs=91.6
Q ss_pred eEEEEE---eeeecchhhhccCCCCCCCCCccccCccCCCEEEEeEEecCceEEEEEEcccCCee---EEecCCCCCCcc
Q psy12908 18 IHWCLT---TIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCL---TYYDSMAGPDRG 91 (148)
Q Consensus 18 ~~~~~~---tff~~~L~~~~~~~~~~~~~w~~~~~l~~~~~i~iPin~~~~HW~l~~v~~~~~~i---~~~DSl~~~~~~ 91 (148)
.| +++ |+|+..... +++..+.+|++..++ +++|++|||.+++||+|++|+.+++++ .|||||++.+..
T Consensus 30 v~-f~~p~~~~~l~~~~~---~~~~~~~~~~~~~~~--~~~i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~~~~~ 103 (186)
T 2oix_A 30 LH-FADSQVVTMLSSADP---DQQARAQRLLAGDDI--PPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQ 103 (186)
T ss_dssp EE-ECCHHHHHHTTCSSH---HHHHHHHHHHHSTTS--CSEEEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSSCCHH
T ss_pred EE-EECHHHHHHHHhCCH---HHHHHHHHHcccccc--cCEEEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCCCCHH
Confidence 44 477 445544333 234456667665554 999999999988999999999999999 999999986532
Q ss_pred c-------------------cccCCCCCCCCCchHHHHHHHHHHhcC----C--CCCCCCCCChHHHHHHHHHHHHhC
Q psy12908 92 C-------------------LNDVPQQQNSSDCGVFTSTFAEYLSRN----A--DIFKIKQKDMPYYRKKMMAEILSK 144 (148)
Q Consensus 92 ~-------------------~~~~p~Q~n~~DCGvfv~~~~~~~~~~----~--~~~~~~~~~~~~~R~~i~~~ll~~ 144 (148)
. ..++|||.||+|||||||+||++++.+ . .+..++++++...|++|...|.+.
T Consensus 104 ~~~l~~~l~~~l~~~~~~~~~~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 104 QRYLADMAAYHLGLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp HHHHHHHHHHHTTCCGGGCEEECBCCCC--CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 1 017999999999999999999998754 2 223688899999999999888764
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=97.38 E-value=0.00028 Score=51.92 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=45.3
Q ss_pred cCceEEEEEEcccCCeeEEecCCCCCCccccc-----------------------------cCCCCCCCCCchHHHHHHH
Q psy12908 63 QKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN-----------------------------DVPQQQNSSDCGVFTSTFA 113 (148)
Q Consensus 63 ~~~HW~l~~v~~~~~~i~~~DSl~~~~~~~~~-----------------------------~~p~Q~n~~DCGvfv~~~~ 113 (148)
|+.||.....|+..++++.+||.+=++.+-.+ +.-|=+++--||.|.|.|.
T Consensus 51 GGvHWiA~Aw~P~s~~~YmFDPfG~sd~~L~qiY~F~Y~~llkRSAL~sspdRCv~LvkstqsVQcp~SaACGLFC~lFL 130 (204)
T 4ekf_A 51 GGVHWMAFAWNPRSKTCYLFEPFGFSDQRLKQVYQFEYESLLRRSAIASSPDRCITLEKSTQSVQGPNSAAAGLFCCMFL 130 (204)
T ss_dssp -CCCEEEEEEETTTTEEEEECTBTTCSHHHHHHHHHHHHHHHHHHCC--------EEEECCSBCSCTTCCCHHHHHHHHH
T ss_pred CceeEEEeEecCCcceEEEeCCCCCCHHHHHHHhhhhHHHHHHHHhhcCCCCceeEEEeccccccCcCchhHHHHHHHHH
Confidence 68999999999999999999999977654211 3334457889999999999
Q ss_pred HHHhcC
Q psy12908 114 EYLSRN 119 (148)
Q Consensus 114 ~~~~~~ 119 (148)
.++..-
T Consensus 131 ~aF~~~ 136 (204)
T 4ekf_A 131 HAFANW 136 (204)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 988754
No 8
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=92.70 E-value=0.062 Score=42.70 Aligned_cols=30 Identities=30% Similarity=0.634 Sum_probs=27.4
Q ss_pred CCeeeeceEeeccccCceEEEEEeeeecchh
Q psy12908 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKC 31 (148)
Q Consensus 1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~ 31 (148)
||+|++|+|++|+|. ..||++..+.++.+.
T Consensus 116 vdlf~kD~I~IPIn~-~~HW~LaVI~~P~~~ 145 (323)
T 3eay_A 116 INIFNKDYIFVPVNE-SSHWYLAVICFPWLE 145 (323)
T ss_dssp CCGGGCSEEEEEEEE-TTEEEEEEEECTTCS
T ss_pred cccccCCEEEEecCC-CCceEEEEEecCCcc
Confidence 699999999999997 689999999998774
No 9
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=88.02 E-value=0.33 Score=35.98 Aligned_cols=38 Identities=34% Similarity=0.720 Sum_probs=28.0
Q ss_pred CCeeeeceEeeccccCceEEEEEeeeecchhhhccCCC
Q psy12908 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSM 38 (148)
Q Consensus 1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~~~~~~~~ 38 (148)
+|+|+.|+|++|.+.+..||++..+..+.-....+++.
T Consensus 96 ~~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl 133 (221)
T 1euv_A 96 TQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSL 133 (221)
T ss_dssp SCGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSS
T ss_pred CCcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecC
Confidence 58999999999999866899988776554443334443
No 10
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=87.48 E-value=0.35 Score=35.53 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCeeeeceEeecccc------CceEEEEEeeeecchhhhccCCCCC
Q psy12908 1 VDLFSYDILLVPIHV------QKIHWCLTTIDFRKKCLTYYDSMAG 40 (148)
Q Consensus 1 ~~~~~~d~~l~p~~~------~~~~~~~~tff~~~L~~~~~~~~~~ 40 (148)
+|+|+.|+|++|++. ++.||++-.+..+.-....+++..+
T Consensus 78 ~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~ 123 (212)
T 2bkr_A 78 LDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSR 123 (212)
T ss_dssp GTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTT
T ss_pred cccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCC
Confidence 589999999999995 5799999887766544434454443
No 11
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=86.59 E-value=0.42 Score=35.81 Aligned_cols=37 Identities=73% Similarity=1.367 Sum_probs=27.4
Q ss_pred CCeeeeceEeeccccCceEEEEEeeeecchhhhccCCC
Q psy12908 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSM 38 (148)
Q Consensus 1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~~~~~~~~ 38 (148)
+|+|+.|+|++|.+. +.||++..+.++.-....+++.
T Consensus 110 ~~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~~DSl 146 (238)
T 2xph_A 110 VDVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSM 146 (238)
T ss_dssp CCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTT
T ss_pred CCcccCCEEEEcccC-CCceEEEEEEcccceEEEeecc
Confidence 589999999999997 5899998876654433334443
No 12
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=83.02 E-value=0.76 Score=34.07 Aligned_cols=37 Identities=65% Similarity=1.211 Sum_probs=27.5
Q ss_pred CCeeeeceEeeccccCceEEEEEeeeecchhhhccCCC
Q psy12908 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSM 38 (148)
Q Consensus 1 ~~~~~~d~~l~p~~~~~~~~~~~tff~~~L~~~~~~~~ 38 (148)
+|+|+.|+|++|.+. +.||++-.+..+.-....+++.
T Consensus 98 ~~l~~~~~i~iPin~-~~HW~l~vi~~~~~~i~~~DSl 134 (226)
T 1th0_A 98 VNLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKYLDSM 134 (226)
T ss_dssp CCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTT
T ss_pred CCcccCCEEEEeEEe-CcEEEEEEEEcCCCceEEEcCC
Confidence 589999999999997 6899988876554444334443
No 13
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=80.33 E-value=0.76 Score=33.19 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=27.7
Q ss_pred eceEeeccccCceEEEEEeeeecchhh---hccCCCCC
Q psy12908 6 YDILLVPIHVQKIHWCLTTIDFRKKCL---TYYDSMAG 40 (148)
Q Consensus 6 ~d~~l~p~~~~~~~~~~~tff~~~L~~---~~~~~~~~ 40 (148)
+|+|++|+|.++.||.+-.+..+.-.. .++++..+
T Consensus 62 ~~~i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~ 99 (186)
T 2oix_A 62 PPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQ 99 (186)
T ss_dssp CSEEEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSS
T ss_pred cCEEEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCC
Confidence 899999999877999999888776655 45565554
No 14
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=21.16 E-value=68 Score=21.46 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=18.5
Q ss_pred CCCCCCCCchHHHHHHHHHHhcCCCC
Q psy12908 97 PQQQNSSDCGVFTSTFAEYLSRNADI 122 (148)
Q Consensus 97 p~Q~n~~DCGvfv~~~~~~~~~~~~~ 122 (148)
-.|.+..|||.-++..+-... |.+.
T Consensus 9 ~~Q~~~~dcglacLa~i~~~~-g~~~ 33 (156)
T 3k8u_A 9 VPQIDTRDCGPAVLASVAKHY-GSNY 33 (156)
T ss_dssp CCCSSTTCHHHHHHHHHHHHT-TCCC
T ss_pred EECCCCCCHHHHHHHHHHHHh-CCCC
Confidence 368889999999988765553 5544
Done!