RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12908
(148 letters)
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol
protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A
2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Length = 238
Score = 96.0 bits (238), Expect = 2e-25
Identities = 56/147 (38%), Positives = 79/147 (53%), Gaps = 18/147 (12%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
VD+FS DILLVPIH +HWCL +DFRKK +TYYDSM G + + L Y L
Sbjct: 110 VDVFSVDILLVPIH-LGVHWCLAVVDFRKKNITYYDSMGGINNEACRI-LLQY---LKQE 164
Query: 61 HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
+ K T ++ ++PQQ N SDCG+F +A+ ++++
Sbjct: 165 SIDKKRKEFDTNGWQLFSKKS------------QEIPQQMNGSDCGMFACKYADCITKDR 212
Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKLL 147
Q+ MPY+RK+M+ EIL +KLL
Sbjct: 213 -PINFTQQHMPYFRKRMVWEILHRKLL 238
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3
hydrolase desumoylating enzyme, cysteine protease; 1.60A
{Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A
2hl8_A 2hl9_A
Length = 221
Score = 90.6 bits (224), Expect = 2e-23
Identities = 31/147 (21%), Positives = 46/147 (31%), Gaps = 28/147 (19%)
Query: 27 FRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMA 86
F + D + PI++ + HW L ID +KK + Y DS++
Sbjct: 75 FYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLS 134
Query: 87 GPDRGCLN---------------------------DVPQQQNSSDCGVFTSTFAEYLSRN 119
D PQQ N DCG++ Y S +
Sbjct: 135 NGPNAMSFAILTDLQKYVMEESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSAD 194
Query: 120 ADIFKIKQKDMPYYRKKMMAEILSKKL 146
A KD R+ + IL+ L
Sbjct: 195 AP-LDFDYKDAIRMRRFIAHLILTDAL 220
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell
cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7
PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Length = 226
Score = 85.3 bits (210), Expect = 2e-21
Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 18/147 (12%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
V+LF +I+LVPIH +K+HW L ID RKKCL Y DSM + L Y L
Sbjct: 98 VNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEI-LLQY---LQDE 152
Query: 61 HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
K + L +++ + ++ +PQQ N SDCG+FT +A+Y+SR+
Sbjct: 153 SKTKRNSDLNLLEWTHHSMKPHE------------IPQQLNGSDCGMFTCKYADYISRDK 200
Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKLL 147
Q MP +RKKM+ EIL ++LL
Sbjct: 201 P-ITFTQHQMPLFRKKMVWEILHQQLL 226
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease,
type III secreted effec desumoylating enzyme; 1.80A
{Xanthomonas euvesicatoria} PDB: 2oiv_A
Length = 186
Score = 73.1 bits (179), Expect = 4e-17
Identities = 23/123 (18%), Positives = 32/123 (26%), Gaps = 22/123 (17%)
Query: 30 KCLTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKK---CLTYYDSMA 86
L+ D L I+ +PI+ HW L +D R K +YDSMA
Sbjct: 39 TMLSSADPDQQARAQRLLAGDDIPPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMA 98
Query: 87 GPDRGCLN-------------------DVPQQQNSSDCGVFTSTFAEYLSRNADIFKIKQ 127
D + Q + G T E L+
Sbjct: 99 QKDPQQRYLADMAAYHLGLDYQQTHEMPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDY 158
Query: 128 KDM 130
Sbjct: 159 AGG 161
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex,
ubiquitin, hydrolase, Pro thiol protease, UBL
conjugation pathway, ubiquitin/hydrolas complex; 1.90A
{Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Length = 212
Score = 64.4 bits (156), Expect = 1e-13
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 35/132 (26%)
Query: 47 NVDLFSYDILLVPIH------VQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLN------ 94
+DL + ++ + I+ HW L K +YDS + +
Sbjct: 77 PLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKL 136
Query: 95 ----------------DVPQQQNSSDCGVFTSTFAEYLSRN-------ADIFKIKQKDMP 131
P QQNS DCG++ E L +N + + + +
Sbjct: 137 EAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYIT 196
Query: 132 YYRKKMMAEILS 143
R + I +
Sbjct: 197 KKRGEWKDLIAT 208
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal,
alternative splicing, hydrolase, phosphoprotein,
polymorphism, thiol protease; 2.40A {Homo sapiens}
Length = 323
Score = 56.3 bits (134), Expect = 2e-10
Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 56/198 (28%)
Query: 1 VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
+++F+ D + VP++ + HW L I F Y+ D +
Sbjct: 116 INIFNKDYIFVPVN-ESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDN 174
Query: 61 HVQKIH---------------WCLATIDFRKKCLTYYDSMAGPD---------------- 89
++ + ++ C+ DS+
Sbjct: 175 DLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEW 234
Query: 90 ---------------RGCLNDVPQQQNSSDCGVFTSTFAEYLSRNADIFKIK-------- 126
VP+Q NSSDCGV+ + E ++ +
Sbjct: 235 EVKLKTHRQFSKTNMVDLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWF 294
Query: 127 -QKDMPYYRKKMMAEILS 143
+ + R+ + IL
Sbjct: 295 PRHVIKTKREDIRELILK 312
Score = 35.9 bits (81), Expect = 0.003
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 47 NVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGC 92
++++F+ D + VP++ + HW LA I F Y+
Sbjct: 115 HINIFNKDYIFVPVN-ESSHWYLAVICFPWLEEAVYEDFPQTVSQQ 159
>1ha8_A Pheromone, ER-23; NMR {Euplotes raikovi} SCOP: g.58.1.1
Length = 51
Score = 26.5 bits (58), Expect = 0.84
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 78 CLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTS 110
C T +++ GP CL P ++SDC F S
Sbjct: 13 CTTCFNNGTGPCANCLAGYPAGCSNSDCTAFLS 45
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria,
cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Length = 179
Score = 26.9 bits (58), Expect = 2.1
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 92 CLNDVPQQQNSSDCGVFTSTFAEYLSRNADI 122
L D ++Q+ + + TFA+ L+ ++ +
Sbjct: 142 VLYDEEKEQDRGNSKIAALTFAKELAESSQL 172
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding
protein; HET: MSE; 1.70A {Toxoplasma gondii}
Length = 166
Score = 26.0 bits (56), Expect = 4.1
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 92 CLNDVPQQQNSSDCGVFTSTFAEYLSRN 119
L D ++Q+ + FAEYL ++
Sbjct: 137 ALYDEEKEQDKGNSRTSALAFAEYLHQS 164
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein,
repeat, leucine- rich repeat, nuclear transport; 2.8A
{Saccharomyces cerevisiae} SCOP: d.17.4.2
Length = 184
Score = 25.5 bits (55), Expect = 7.1
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 73 DFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGV 107
F KK L + D PD L Q N ++C +
Sbjct: 21 TFTKKILAHLDD---PDSNKLAQFVQLFNPNNCRI 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 7.2
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 94 ND-VPQQQNSSDCGVFTS--TFA-EYLSRNADIFKIKQKDMPYYRKKMMAEILSKKLL 147
N V QQ + A + ++ + K+++ D+ +K + E + L
Sbjct: 1845 NYNVENQQ------YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.452
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,282,944
Number of extensions: 117167
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 262
Number of HSP's successfully gapped: 17
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.9 bits)