RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12908
         (148 letters)



>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 226

 Score = 81.8 bits (201), Expect = 2e-20
 Identities = 53/147 (36%), Positives = 72/147 (48%), Gaps = 18/147 (12%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           V+LF  +I+LVPIH +K+HW L  ID RKKCL Y DSM         + L          
Sbjct: 98  VNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGHRICEILLQYLQDESKTK 156

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
               ++    T    K                  ++PQQ N SDCG+FT  +A+Y+SR+ 
Sbjct: 157 RNSDLNLLEWTHHSMKPH----------------EIPQQLNGSDCGMFTCKYADYISRDK 200

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKLL 147
                 Q  MP +RKKM+ EIL ++LL
Sbjct: 201 P-ITFTQHQMPLFRKKMVWEILHQQLL 226


>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 80.2 bits (197), Expect = 5e-20
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 28/127 (22%)

Query: 47  NVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDV---------- 96
              +   D +  PI++ + HW L  ID +KK + Y DS++         +          
Sbjct: 95  KTQIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVME 154

Query: 97  -----------------PQQQNSSDCGVFTSTFAEYLSRNADIFKIKQKDMPYYRKKMMA 139
                            PQQ N  DCG++      Y S +A       KD    R+ +  
Sbjct: 155 ESKHTIGEDFDLIHLDCPQQPNGYDCGIYVCMNTLYGSADA-PLDFDYKDAIRMRRFIAH 213

Query: 140 EILSKKL 146
            IL+  L
Sbjct: 214 LILTDAL 220


>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 225

 Score = 79.1 bits (194), Expect = 2e-19
 Identities = 52/146 (35%), Positives = 75/146 (51%), Gaps = 18/146 (12%)

Query: 1   VDLFSYDILLVPIHVQKIHWCLTTIDFRKKCLTYYDSMAGPDRGCLNVDLFSYDILLVPI 60
           VD+FS DILLVPIH   +HWCL  +DFRKK +TYYDSM G +     +            
Sbjct: 98  VDVFSVDILLVPIH-LGVHWCLAVVDFRKKNITYYDSMGGINNEACRI------------ 144

Query: 61  HVQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTSTFAEYLSRNA 120
               +   L      KK   +  +          ++PQQ N SD G+F   +A+ ++++ 
Sbjct: 145 ----LLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGSDAGMFACKYADCITKDR 200

Query: 121 DIFKIKQKDMPYYRKKMMAEILSKKL 146
                 Q+ MPY+RK+M+ EIL +KL
Sbjct: 201 -PINFTQQHMPYFRKRMVWEILHRKL 225


>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 212

 Score = 54.8 bits (131), Expect = 1e-10
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 35/132 (26%)

Query: 47  NVDLFSYDILLVPIH------VQKIHWCLATIDFRKKCLTYYDSMAGPDRGCLNDV---- 96
            +DL +  ++ + I+          HW L      K    +YDS +  +      V    
Sbjct: 77  PLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSRSNSVHAKQVAEKL 136

Query: 97  ------------------PQQQNSSDCGVFTSTFAEYLSRNADIF-------KIKQKDMP 131
                             P QQNS DCG++     E L +N            +    + 
Sbjct: 137 EAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYIT 196

Query: 132 YYRKKMMAEILS 143
             R +    I +
Sbjct: 197 KKRGEWKDLIAT 208


>d1ha8a_ g.58.1.1 (A:) Pheromone ER-23 {Euplotes raikovi [TaxId:
           5938]}
          Length = 51

 Score = 26.5 bits (58), Expect = 0.30
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 78  CLTYYDSMAGPDRGCLNDVPQQQNSSDCGVFTS 110
           C T +++  GP   CL   P   ++SDC  F S
Sbjct: 13  CTTCFNNGTGPCANCLAGYPAGCSNSDCTAFLS 45


>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
           {Leishmania major [TaxId: 5664]}
          Length = 158

 Score = 26.2 bits (57), Expect = 1.1
 Identities = 12/109 (11%), Positives = 23/109 (21%), Gaps = 4/109 (3%)

Query: 32  LTYYDSMAGPDRGCLNVDLFSYDILLVPIHVQKIHWCLATIDFRKKCLTYYDSMAGPDRG 91
             ++    GP+        +   + L   +  K              +         D  
Sbjct: 26  AEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVI 85

Query: 92  CLNDVPQQQNSSDCGVFTSTFAEYLSR----NADIFKIKQKDMPYYRKK 136
                P  Q  +   VF      Y +     N     +   D   +   
Sbjct: 86  NQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDAL 134


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 585,189
Number of extensions: 24729
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 9
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.2 bits)