BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12909
(63 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M ++MERSKEK LP + FNTFF + L GY VKRWTKK++
Sbjct: 69 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 111
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M ++MERSKEK LP + FNTFF + L GY VKRWTKK++
Sbjct: 61 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 103
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M ++MERSKEK LP + FNTFF + L GY VKRWTKK++
Sbjct: 57 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 99
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M ++MERSKEK LP + FNTFF + L GY VKRWTKK++
Sbjct: 57 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 99
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
Length = 205
Score = 52.0 bits (123), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M ++MERSKEK LP + FNTFF + L GY VKRWTKK++
Sbjct: 36 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 78
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 52.0 bits (123), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M ++MERSKEK LP + FNTFF + L GY VKRWTKK++
Sbjct: 57 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 99
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M L++ER+K K P + F+TFF+ L GY VKRWTK +N
Sbjct: 57 MNLLVERNK-KQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVN 99
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M L++ER+K K P + F+TFF+ L GY VKRWTK +N
Sbjct: 63 MNLLVERNK-KQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVN 105
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain
In Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 15 PRAYGFNTFFHSALAEHGYSRVKRWTKK 42
P FN+FF++ L+E GY V+RW K+
Sbjct: 66 PNTVAFNSFFYTNLSERGYQGVRRWMKR 93
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized
To A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized
To A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized
To A Sulfonic Acid
Length = 221
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 15 PRAYGFNTFFHSALAEHGYSRVKRWTKK 42
P FN+FF++ L+E GY V+RW K+
Sbjct: 66 PNTVAFNSFFYTNLSERGYQGVRRWMKR 93
>pdb|3V9J|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9J|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Sulfate Ion
pdb|3V9K|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9K|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With The Product Glutamate
pdb|3V9L|A Chain A, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|3V9L|B Chain B, Crystal Structure Of Mouse 1-Pyrroline-5-Carboxylate
Dehydrogenase Complexed With Nad+
pdb|4E3X|A Chain A, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
pdb|4E3X|B Chain B, Crystal Structure Of Mus Musculus
1-Pyrroline-5-Carboxylate Dehydrogenase Cryoprotected In
Proline
Length = 563
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 3 LIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRW 39
L+ E S+ K P A F TFF + + ++R+K+W
Sbjct: 368 LLEEHSRIKVGDP-AEDFGTFFSAVIDAKAFARIKKW 403
>pdb|3V9I|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
Length = 566
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 3 LIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRW 39
L+ E S+ K P A F TFF + + ++R+K+W
Sbjct: 371 LLEEHSRIKVGDP-AEDFGTFFSAVIDAKSFARIKKW 406
>pdb|3V9H|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
Length = 566
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 3 LIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRW 39
L+ E S+ K P A F TFF + + ++R+K+W
Sbjct: 371 LLEEHSRIKVGDP-AEDFGTFFSAVIDAKSFARIKKW 406
>pdb|3V9G|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
Length = 566
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 3 LIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRW 39
L+ E S+ K P A F TFF + + ++R+K+W
Sbjct: 371 LLEEHSRIKVGDP-AEDFGTFFSAVIDAKSFARIKKW 406
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,011,886
Number of Sequences: 62578
Number of extensions: 62997
Number of successful extensions: 145
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 14
length of query: 63
length of database: 14,973,337
effective HSP length: 34
effective length of query: 29
effective length of database: 12,845,685
effective search space: 372524865
effective search space used: 372524865
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)