BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12909
(63 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1
Length = 568
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKK 42
M LI ERSK + LPR +GFNTFF+++L GY+ V+RW KK
Sbjct: 402 MNLISERSKIDSSLPRVHGFNTFFYTSLQRRGYAGVRRWAKK 443
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M ++MERSKEK LP + FNTFF + L GY VKRWTKK++
Sbjct: 476 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 518
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M ++MERSKEK LP + FNTFF + L GY VKRWTKK++
Sbjct: 475 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 517
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2
SV=3
Length = 697
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
+ LI +RS + P+ Y FNTFF+S + GY+ VKRWT+K++ ++ +P ++
Sbjct: 526 LQLICDRSNGDSKYPKIYAFNTFFYSNIVSKGYASVKRWTRKVDIFAFDIVLVPVHL 582
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M ++MERSKEK P + FNTFF + L GY VKRWTKK++
Sbjct: 471 MNMLMERSKEK-GFPSVHAFNTFFFTKLKTAGYQAVKRWTKKVD 513
>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2
Length = 588
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M L++ERSK K P + F+TFF+ L GY VKRWTK +N
Sbjct: 419 MNLLVERSK-KQGYPALHAFSTFFYPKLKSGGYQAVKRWTKGVN 461
>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3
Length = 589
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M L++ER+K K P + F+TFF+ L GY VKRWTK +N
Sbjct: 420 MNLLVERNK-KQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVN 462
>sp|Q9EQE1|SENP2_RAT Sentrin-specific protease 2 OS=Rattus norvegicus GN=Senp2 PE=1 SV=1
Length = 588
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M L++ERSK K P + +TFF+ L GY VKRWTK +N
Sbjct: 419 MNLLVERSK-KQGYPALHALSTFFYPKLKSGGYQAVKRWTKGVN 461
>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1
Length = 589
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M L++ER+K K P + F+TFF+ L GY VKRWTK +N
Sbjct: 420 MNLLVERNK-KQGYPALHVFSTFFYPKLKSGGYQAVKRWTKGVN 462
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1
Length = 749
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 3 LIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
LIM+ +K FN+FFH L GY+ VKRWTKK++
Sbjct: 588 LIMDAVPDKVHF-----FNSFFHRQLVTKGYNGVKRWTKKVD 624
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3
Length = 755
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 3 LIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
LIM+ +K FN+FFH L GY+ VKRWTKK++
Sbjct: 594 LIMDAVPDKVHF-----FNSFFHRQLVTKGYNGVKRWTKKVD 630
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2
SV=1
Length = 755
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 3 LIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
LIM+ +K FN+FFH L GY+ VKRWTKK++
Sbjct: 594 LIMDAVPDKVHF-----FNSFFHRQLVTKGYNGVKRWTKKVD 630
>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1
Length = 621
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 15 PRAYGFNTFFHSALAEHGYSRVKRWTKK 42
P FN+FF++ L+E GY V+RW K+
Sbjct: 466 PNTVAFNSFFYTNLSERGYQGVRRWMKR 493
>sp|Q9H4L4|SENP3_HUMAN Sentrin-specific protease 3 OS=Homo sapiens GN=SENP3 PE=1 SV=2
Length = 574
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 3 LIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
L+M+ EK FN+FF+ L GY VKRWTK ++
Sbjct: 413 LVMDTVPEKVHF-----FNSFFYDKLRTKGYDGVKRWTKNVD 449
>sp|Q9EP97|SENP3_MOUSE Sentrin-specific protease 3 OS=Mus musculus GN=Senp3 PE=1 SV=1
Length = 568
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 3 LIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
L+M+ EK FN+FF+ L GY VKRWTK ++
Sbjct: 407 LVMDTVPEKVHF-----FNSFFYDKLRTKGYDGVKRWTKNVD 443
>sp|A0JZZ4|ACKA_ARTS2 Acetate kinase OS=Arthrobacter sp. (strain FB24) GN=ackA PE=3 SV=1
Length = 386
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 8 SKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTY 56
+K+ D+P+ F+T FH L EH W + Y NH I Y
Sbjct: 122 AKKWPDMPQVAVFDTAFHRTLPEHA------WRYAVPDSLYTNHGIRRY 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,052,032
Number of Sequences: 539616
Number of extensions: 784892
Number of successful extensions: 1793
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1773
Number of HSP's gapped (non-prelim): 18
length of query: 63
length of database: 191,569,459
effective HSP length: 35
effective length of query: 28
effective length of database: 172,682,899
effective search space: 4835121172
effective search space used: 4835121172
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)