Query psy12909
Match_columns 63
No_of_seqs 111 out of 445
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:51:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 99.8 8.8E-21 3E-25 136.6 -0.1 47 14-60 71-133 (323)
2 2xph_A Sentrin-specific protea 99.7 2.5E-18 8.7E-23 116.6 2.6 59 1-60 69-127 (238)
3 1th0_A SMT3-, sentrin-specific 99.7 4.8E-18 1.7E-22 114.3 3.1 58 2-60 58-115 (226)
4 1euv_A ULP1 protease; SUMO hyd 99.6 1E-15 3.5E-20 102.8 3.3 46 15-60 66-114 (221)
5 2bkr_A Sentrin-specific protea 99.3 3E-13 1E-17 89.8 2.4 54 1-57 36-92 (212)
6 2oix_A Xanthomonas outer prote 99.0 3.9E-11 1.3E-15 79.2 0.0 58 1-60 14-75 (186)
7 1gef_A Holliday junction resol 21.7 40 0.0014 20.5 1.5 20 27-46 15-35 (123)
8 1hji_B NUN-protein; bacterioph 19.8 10 0.00035 17.8 -1.2 12 32-43 8-19 (26)
9 3ro3_B Minsc, peptide of prote 18.9 26 0.00088 16.0 0.1 11 32-42 6-16 (22)
10 1zvp_A Hypothetical protein VC 16.1 53 0.0018 20.3 1.1 12 45-56 107-118 (133)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=99.78 E-value=8.8e-21 Score=136.60 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=43.4
Q ss_pred CCeEEEEccHhHHHHhhc----------------cccchhhhhhccCcccCCeEEEeccCCcc
Q psy12909 14 LPRAYGFNTFFHSALAEH----------------GYSRVKRWTKKLNPLFYNNHKIPTYILVV 60 (63)
Q Consensus 14 ~~~~~~fntFFy~~L~~~----------------gy~~V~RWtk~vdlf~~d~I~iPI~~~~~ 60 (63)
.+++|+||||||++|.+. ||++|+|||+++|||++|+||||||.+.|
T Consensus 71 ~~r~h~FnSFFy~kL~~~~~~~~~~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~H 133 (323)
T 3eay_A 71 VERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSH 133 (323)
T ss_dssp HHTEEECCTHHHHHHSCC--------CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTE
T ss_pred cCcEEEEchHHHHHHHhcccccccccccchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCc
Confidence 469999999999999853 68999999999999999999999999877
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=99.71 E-value=2.5e-18 Score=116.62 Aligned_cols=59 Identities=46% Similarity=0.718 Sum_probs=52.6
Q ss_pred CcchhhhhccCCCCCeEEEEccHhHHHHhhccccchhhhhhccCcccCCeEEEeccCCcc
Q psy12909 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVV 60 (63)
Q Consensus 1 m~Li~eRs~~~~~~~~~~~fntFFy~~L~~~gy~~V~RWtk~vdlf~~d~I~iPI~~~~~ 60 (63)
|++|.+|+... +.+++|+||||||++|.+.||++|+|||+++|+|++|+|+||||.+.|
T Consensus 69 ~~~L~~~~~~~-~~~~~~~f~sff~~~l~~~~~~~v~~w~~~~~l~~~~~i~iPin~~~H 127 (238)
T 2xph_A 69 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVH 127 (238)
T ss_dssp HHHHHHHTTST-TSCCEEECCTTTTHHHHTTCHHHHTTTTTTCCGGGSSEEEEEEEETTE
T ss_pred HHHHHHhhhhc-CCCceeeeecHHHHHhhhcccHHHHHHhccCCcccCCEEEEcccCCCc
Confidence 35677776543 478999999999999999999999999999999999999999999876
No 3
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=99.70 E-value=4.8e-18 Score=114.33 Aligned_cols=58 Identities=36% Similarity=0.521 Sum_probs=51.6
Q ss_pred cchhhhhccCCCCCeEEEEccHhHHHHhhccccchhhhhhccCcccCCeEEEeccCCcc
Q psy12909 2 ALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYILVV 60 (63)
Q Consensus 2 ~Li~eRs~~~~~~~~~~~fntFFy~~L~~~gy~~V~RWtk~vdlf~~d~I~iPI~~~~~ 60 (63)
++|.+|...+ +.+++|+||||||++|.+.||++|+|||+++|+|++|+|+||||.+.|
T Consensus 58 ~~L~~~~~~~-~~~~~~~f~s~f~~~l~~~~~~~v~~w~~~~~l~~~~~i~iPin~~~H 115 (226)
T 1th0_A 58 NLLVERNKKQ-GYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVPIHRKVH 115 (226)
T ss_dssp HHHHHHHHHH-TCCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGGSSEEEEEEEETTE
T ss_pred HHHHHhhhhc-cCCcEEEEeHHHHHHhhhcccHHHHHHhhcCCcccCCEEEEeEEeCcE
Confidence 5677776443 368999999999999999999999999999999999999999999876
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.57 E-value=1e-15 Score=102.82 Aligned_cols=46 Identities=33% Similarity=0.549 Sum_probs=43.1
Q ss_pred CeEEEEccHhHHHHhhccccchhhhhh--ccCcccCCeEEEeccCC-cc
Q psy12909 15 PRAYGFNTFFHSALAEHGYSRVKRWTK--KLNPLFYNNHKIPTYIL-VV 60 (63)
Q Consensus 15 ~~~~~fntFFy~~L~~~gy~~V~RWtk--~vdlf~~d~I~iPI~~~-~~ 60 (63)
|++|+||||||++|.+.||++|+|||+ ++|+|++|+|+||||.+ .|
T Consensus 66 ~~~~~f~s~f~~~l~~~~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~H 114 (221)
T 1euv_A 66 PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPINLNQSH 114 (221)
T ss_dssp TTEEECCTHHHHHHHHHTGGGTTTTTGGGTSCGGGCSEEEEEEEETTTE
T ss_pred CCeEEEEcHHHHHhhhhccHHHHHHHHhccCCcccCCEEEEEEEcCCCe
Confidence 799999999999999999999999998 68999999999999985 55
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.34 E-value=3e-13 Score=89.81 Aligned_cols=54 Identities=6% Similarity=-0.066 Sum_probs=44.4
Q ss_pred CcchhhhhccCCCCCeEEEEc---cHhHHHHhhccccchhhhhhccCcccCCeEEEeccC
Q psy12909 1 MALIMERSKEKTDLPRAYGFN---TFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57 (63)
Q Consensus 1 m~Li~eRs~~~~~~~~~~~fn---tFFy~~L~~~gy~~V~RWtk~vdlf~~d~I~iPI~~ 57 (63)
|++|.++...+. .+++|+|| ||||+.+. +|++|+||++++|+|++|+||||||.
T Consensus 36 ~~~L~~~~~~~~-~~~~~~~~p~~s~f~~~~~--~~~~v~~~~~~~~l~~~~~i~iPIn~ 92 (212)
T 2bkr_A 36 FEYFANSQFHDS-SDHVSFISPEVTQFIKCTS--NPAEIAMFLEPLDLPNKRVVFLAIND 92 (212)
T ss_dssp HHHHHHTTTGGG-TTTEEEECHHHHHHHHHCC--CHHHHHHHHGGGTGGGCSEEEEEEEC
T ss_pred HHHHHHhhccCC-CCcEEEEChHHHHHHHhCC--CHHHHHHHhcccccccCCEEEEEEec
Confidence 356677764333 57999999 99996654 48899999999999999999999995
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.00 E-value=3.9e-11 Score=79.18 Aligned_cols=58 Identities=9% Similarity=-0.077 Sum_probs=42.5
Q ss_pred CcchhhhhccCCCCCeEEEEccHhHHHHh---hccccchhhhhhccCcccCCeEEEeccC-Ccc
Q psy12909 1 MALIMERSKEKTDLPRAYGFNTFFHSALA---EHGYSRVKRWTKKLNPLFYNNHKIPTYI-LVV 60 (63)
Q Consensus 1 m~Li~eRs~~~~~~~~~~~fntFFy~~L~---~~gy~~V~RWtk~vdlf~~d~I~iPI~~-~~~ 60 (63)
|++|.+|...+++..++|+|++++...|. ..||++++||+++.|+ +|+||||||. +.|
T Consensus 14 ~~~L~~~~~~~~~~~~v~f~~p~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~i~iPin~~~~H 75 (186)
T 2oix_A 14 TDDLARRLRGEPNAHLLHFADSQVVTMLSSADPDQQARAQRLLAGDDI--PPIVFLPINQPNAH 75 (186)
T ss_dssp HHHHHHHTTTSTTGGGEEECCHHHHHHTTCSSHHHHHHHHHHHHSTTS--CSEEEEEEEETTTE
T ss_pred HHHHHHHhhhccCcceEEEECHHHHHHHHhCCHHHHHHHHHHcccccc--cCEEEEEEeCCCCc
Confidence 46788887655544569999965444443 4567788888887776 9999999998 565
No 7
>1gef_A Holliday junction resolvase; HJC, hydrolase; 2.00A {Pyrococcus furiosus} SCOP: c.52.1.18 PDB: 1ipi_A
Probab=21.68 E-value=40 Score=20.51 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=14.7
Q ss_pred HHhhccccchhhhhhc-cCcc
Q psy12909 27 ALAEHGYSRVKRWTKK-LNPL 46 (63)
Q Consensus 27 ~L~~~gy~~V~RWtk~-vdlf 46 (63)
.|.++||.-++.|..+ +||.
T Consensus 15 ~L~~~Gy~ilrn~r~~EIDII 35 (123)
T 1gef_A 15 LLEKHGFAVVRSAGSKKVDLV 35 (123)
T ss_dssp HHHHTTCEEEEBGGGSSCSEE
T ss_pred HHHHCCCEEEEecCCCCceEE
Confidence 4677999999889876 4443
No 8
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=19.76 E-value=10 Score=17.82 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=8.4
Q ss_pred cccchhhhhhcc
Q psy12909 32 GYSRVKRWTKKL 43 (63)
Q Consensus 32 gy~~V~RWtk~v 43 (63)
.-..+.||.++|
T Consensus 8 drrriarwekri 19 (26)
T 1hji_B 8 DRRRIARWEKRI 19 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 335678898875
No 9
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=18.94 E-value=26 Score=15.98 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=8.0
Q ss_pred cccchhhhhhc
Q psy12909 32 GYSRVKRWTKK 42 (63)
Q Consensus 32 gy~~V~RWtk~ 42 (63)
.-.+|+||...
T Consensus 6 qvDSV~rWmeD 16 (22)
T 3ro3_B 6 QVDSVQRWMED 16 (26)
T ss_pred hhHHHHHHHHH
Confidence 34689999754
No 10
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=16.10 E-value=53 Score=20.32 Aligned_cols=12 Identities=0% Similarity=-0.011 Sum_probs=9.6
Q ss_pred cccCCeEEEecc
Q psy12909 45 PLFYNNHKIPTY 56 (63)
Q Consensus 45 lf~~d~I~iPI~ 56 (63)
-|+.|+||||-.
T Consensus 107 ty~tDhIlVp~~ 118 (133)
T 1zvp_A 107 GYYHDHIFVQKE 118 (133)
T ss_dssp CSSCEEEEEEGG
T ss_pred eccccEEEEehh
Confidence 467899999964
Done!