RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12909
(63 letters)
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational
modification, protein turnover, chaperones].
Length = 578
Score = 49.5 bits (118), Expect = 5e-09
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLN 44
M L+ + SK + + + FNTFF++ L+ GYS V+RWTKK +
Sbjct: 406 MKLLSKISKNTSKREQVHLFNTFFYTKLSRRGYSGVRRWTKKTD 449
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED
MODIFIER (SUMO); Provisional.
Length = 490
Score = 30.6 bits (69), Expect = 0.026
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 1 MALIMERSK-EKTDLPRAYGFNTFFHSALAEHG----YSRVKRWT--KKL 43
+ L+ ER E + + FNTFF+ L Y V+RWT KKL
Sbjct: 313 LELLKEREAREPKKFLKCHFFNTFFYKKLVSGKSGYDYKAVRRWTTQKKL 362
>gnl|CDD|239096 cd02413, 40S_S3_KH, K homology RNA-binding (KH) domain of the
eukaryotic 40S small ribosomal subunit protein S3. S3
is part of the head region of the 40S ribosomal subunit
and is believed to interact with mRNA as it threads its
way from the latch into the channel. The KH motif is a
beta-alpha-alpha-beta-beta unit that folds into an
alpha-beta structure with a three stranded beta-sheet
interupted by two contiguous helices. In general, KH
binds single-stranded RNA or DNA. It is found in a wide
variety of proteins including ribosomal proteins,
transcription factors and post-transcriptional
modifiers of mRNA.
Length = 81
Score = 24.9 bits (55), Expect = 1.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 21 NTFFHSALAEHGYSRVK 37
N F LAE GYS V+
Sbjct: 8 NEFLTRELAEDGYSGVE 24
>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase.
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first
identified as part of the Human Cancer Genome Project.
It maps to chromosome 4q12 and is sometimes referred to
as Arfrp2 (Arf-related protein 2). This is a novel
subfamily identified in human cancers that is
uncharacterized to date.
Length = 164
Score = 25.1 bits (55), Expect = 2.1
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 11 KTDLPRAYGFNTFFHSALAEHGYSRVKRWT 40
K DLP A H L +R +RW
Sbjct: 108 KQDLPAARSV-QEIHKELELEPIARGRRWI 136
>gnl|CDD|119340 cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze
either P-C or C-C bond formation/cleavage. Known members
are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate
hydrolase (PPH), carboxyPEP mutase (CPEP mutase),
oxaloacetate hydrolase (OAH), isocitrate lyase (ICL),
and 2-methylisocitrate lyase (MICL). Isocitrate lyase
(ICL) catalyzes the conversion of isocitrate to
succinate and glyoxylate, the first committed step in
the glyoxylate pathway. This carbon-conserving pathway
is present in most prokaryotes, lower eukaryotes and
plants, but has not been observed in vertebrates. PEP
mutase (PEPM) turns phosphoenolpyruvate (PEP) into
phosphonopyruvate (P-pyr), an important intermediate in
the formation of organophosphonates, which function as
antibiotics or play a role in pathogenesis or signaling.
P-pyr can be hydrolyzed by phosphonopyruvate hydrolase
(PPH) to from pyruvate and phosphate. Oxaloacetate
acetylhydrolase (OAH) catalyzes the hydrolytic cleavage
of oxaloacetate to form acetate and oxalate, an
important pathway to produce oxalate in filamentous
fungi. 2-methylisocitrate lyase (MICL) cleaves
2-methylisocitrate to pyruvate and succinate, part of
the methylcitrate cycle for the alpha-oxidation of
propionate.
Length = 243
Score = 25.1 bits (56), Expect = 2.1
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 10 EKTDLPRAY----GFNTFFHSALAEHGYSRV 36
E D+P G N + LAE G RV
Sbjct: 193 EAPDVPLNVNMTPGGNLLTVAELAELGVRRV 223
>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA
replication, recombination, and repair].
Length = 408
Score = 25.3 bits (56), Expect = 2.1
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 12 TDLPRAYGFNTFFHSALAEHGYSRVKRWTKKL----NPLF 47
+ L Y F+ F Y+ K + NPLF
Sbjct: 78 SGLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLF 117
>gnl|CDD|162096 TIGR00897, 2A0118, polyol permease family. This family of proteins
includes the ribitol and D-arabinitol transporters from
Klebsiella pneumoniae and the alpha-ketoglutarate
permease from Bacillus subtilis [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 402
Score = 25.2 bits (55), Expect = 2.1
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 18 YGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNN 50
+GF F +AE G+S W + F+ N
Sbjct: 239 FGFAVFLPMFVAELGFS-TSEWLQIWGTFFFTN 270
>gnl|CDD|220990 pfam11124, Pho86, Inorganic phosphate transporter Pho86. Pho86p is
an ER protein which is produced in response to phosphate
starvation. It is essential for growth when phosphate
levels are limiting. Pho86p is also involved in the
regulation of Pho84p, a high-affinity phosphate
transporter which is localised to the endoplasmic
reticulum (ER) in low phosphate medium. When the level
of phosphate increases Pho84p is transported to the
vacuole. Pho86p is required for packaging of Pho84p in
to COPII vesicles.
Length = 296
Score = 25.4 bits (56), Expect = 2.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 17 AYGFNTFFHSALAEHGYSRVKRWTKKLNPLFY 48
AY F+ F L + G+ ++ +T N L
Sbjct: 251 AYSFDKTFKKTLKKKGFKKIDSYTLNENRLLG 282
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit.
Members of this protein family are the PimC proteins of
species such as Rhodopseudomonas palustris and
Bradyrhizobium japonicum. The pimFABCDE operon encodes
proteins for the metabolism of straight chain
dicarboxylates of seven to fourteen carbons. Especially
relevant is pimeloyl-CoA, basis of the gene symbol, as
it is a catabolite of benzoyl-CoA degradation, which
occurs in Rhodopseudomonas palustris.
Length = 395
Score = 25.0 bits (54), Expect = 2.9
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 29 AEHGYSRVKRWTKKLNPLFYNNHKIPTY 56
+ G + WT ++ P ++NN K+ Y
Sbjct: 350 GDDGSNEAMDWTAQIAPSYFNNRKVSIY 377
>gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed.
Length = 467
Score = 25.0 bits (55), Expect = 3.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 18 YGFNTFFHSALAEHGYSRVKRWTKK 42
+ + FF S YS + RWT +
Sbjct: 129 WALSGFFQSTGGPCSYSTITRWTPR 153
>gnl|CDD|234170 TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase,
alpha subunit. Indolepyruvate ferredoxin oxidoreductase
(IOR) is an alpha 2/beta 2 tetramer related to ketoacid
oxidoreductases for pyruvate (1.2.7.1, POR),
2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate
(1.2.7.7, VOR). These multi-subunit enzymes typically
are found in anaerobes and are inactiviated by oxygen.
IOR in Pyrococcus acts in fermentation of all three
aromatic amino acids, following removal of the amino
group by transamination. In Methanococcus maripaludis,
by contrast, IOR acts in the opposite direction, in
pathways of amino acid biosynthesis from phenylacetate,
indoleacetate, and p-hydroxyphenylacetate. In M.
maripaludis and many other species, iorA and iorB are
found next to an apparent phenylacetate-CoA ligase.
Length = 595
Score = 24.7 bits (54), Expect = 3.3
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 5 MERSKEKTDLPRAYGFNTFFHSAL 28
+ ++ EK + G +TFFH+ +
Sbjct: 415 LSKAGEKQRIVAFIGDSTFFHTGI 438
>gnl|CDD|219539 pfam07729, FCD, FCD domain. This domain is the C-terminal ligand
binding domain of many members of the GntR family. This
domain probably binds to a range of effector molecules
that regulate the transcription of genes through the
action of the N-terminal DNA-binding domain pfam00392.
This domain is found in E. coli nanR and dgoR that are
regulators of sugar biosynthesis operons. It is also in
the known structure of FadR where it binds to acyl-coA,
the domain is alpha helical. This family has been named
as FCD for (FadR C-terminal Domain).
Length = 125
Score = 24.3 bits (53), Expect = 3.9
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 5 MERSKEKTDLPRAYGFNTFFHSALAEHGYSRV 36
ME + DL + FH A+AE + +
Sbjct: 36 MEAAAAAGDLEAFAELDRAFHRAIAEAAGNPL 67
>gnl|CDD|146096 pfam03289, Pox_I1, Poxvirus protein I1.
Length = 312
Score = 24.2 bits (53), Expect = 4.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 25 HSALAEHGYSRVKRWTKKLNPLFYNN 50
HS L S V R++KK FY
Sbjct: 255 HSMLVSSISSNVDRYSKKFQEDFYER 280
>gnl|CDD|223067 PHA03380, PHA03380, transactivating tegument protein VP16;
Provisional.
Length = 432
Score = 24.2 bits (53), Expect = 5.0
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 20/42 (47%)
Query: 12 TDLPRAYGFNTFFH------------------SALAEHGYSR 35
+LPRA G+ H S L EH Y+R
Sbjct: 318 GNLPRASGY--LTHLIRAKLEAYSEAHPSEPLSVLREHTYAR 357
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.424
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,270,718
Number of extensions: 225673
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 16
Length of query: 63
Length of database: 10,937,602
Length adjustment: 34
Effective length of query: 29
Effective length of database: 9,429,566
Effective search space: 273457414
Effective search space used: 273457414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)