RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12909
(63 letters)
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol
protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A
2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Length = 238
Score = 44.4 bits (104), Expect = 2e-07
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIP 54
M ++MERSKEK LP + FNTFF + L GY VKRWTKK++ + +P
Sbjct: 69 MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVP 121
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell
cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7
PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Length = 226
Score = 39.0 bits (90), Expect = 2e-05
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIP 54
M L++ER+K++ P + F+TFF+ L GY VKRWTK +N +P
Sbjct: 57 MNLLVERNKKQ-GYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVP 109
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal,
alternative splicing, hydrolase, phosphoprotein,
polymorphism, thiol protease; 2.40A {Homo sapiens}
Length = 323
Score = 35.2 bits (79), Expect = 4e-04
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 16/62 (25%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSAL----------------AEHGYSRVKRWTKKLN 44
+ ++ + R++ F++FF+ L A+ + RV+ WT+ +N
Sbjct: 58 LKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHIN 117
Query: 45 PL 46
Sbjct: 118 IF 119
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3
hydrolase desumoylating enzyme, cysteine protease; 1.60A
{Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A
2hl8_A 2hl9_A
Length = 221
Score = 34.0 bits (77), Expect = 0.001
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 1 MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
M I + + P FN+FF++ L+E GY V+RW K+ KI T I
Sbjct: 58 MKYIEKST------PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIFTPI 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 0.16
Identities = 17/81 (20%), Positives = 23/81 (28%), Gaps = 30/81 (37%)
Query: 10 EKTDLPR-AYGFNTFFHSALAE---HGYSRVKRWTK---------------KLNP----- 45
DLPR N S +AE G + W L P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 46 ------LFYNNHKIPTYILVV 60
+F + IPT +L +
Sbjct: 374 MFDRLSVFPPSAHIPTILLSL 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 0.44
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 8 SKEKTDLPRAYGFNTF------FHSALAEHGYSRVKRWTKKLNPLFYNNH-KIPTY 56
S+ K + N F FHS L + + K N F +IP Y
Sbjct: 410 SERK---LK--FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP.
RH structural genomics, PSI-2, protein structure
initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6
a.78.1.1
Length = 239
Score = 25.0 bits (55), Expect = 1.5
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 5 MERSKEKTDLPRAYGFNTFFHSALAE 30
+ D + FHSALA
Sbjct: 134 ADERYAVEDWTGVGTADIHFHSALAS 159
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
protein, structural genomics, PSI-2, protein STRU
initiative; 2.70A {Porphyromonas gingivalis}
Length = 506
Score = 24.8 bits (54), Expect = 2.3
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 13 DLPRAYGFNTFFHSALAEHGYSRVKRWTK--KLNPLFYN 49
+L + F H LA+ G R RW KL ++
Sbjct: 471 NLDCCFAF----HQELAKSGDMRNVRWEDYMKLEHHHHH 505
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding
protein, structural genomics, joint for structural
genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Length = 222
Score = 24.2 bits (53), Expect = 3.0
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 5 MERSKEKTDLPRAYGFNTFFHSALAE 30
+ +++ D F+ L E
Sbjct: 125 LVAAEKAQDGETFSNARRHFYRTLLE 150
>1u83_A Phosphosulfolactate synthase; structural genomics,
phosphosulfolactate PSI, protein structure initiative,
midwest center for struc genomics; 2.20A {Bacillus
subtilis} SCOP: c.1.27.1
Length = 276
Score = 24.1 bits (52), Expect = 3.1
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 2 ALIMERSKEKTDLPRAYGF-----NTFFHSALAEHGYSRVKRWTKKL 43
+L+ + +EK + + T F +++ + R+
Sbjct: 76 SLLTKDLEEKISTLKEHDITFFFGGTLFEKYVSQKKVNEFHRYCTYF 122
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 24.0 bits (52), Expect = 3.6
Identities = 4/24 (16%), Positives = 12/24 (50%)
Query: 39 WTKKLNPLFYNNHKIPTYILVVPT 62
+ ++ + H++ +V+PT
Sbjct: 1227 FCSEIPSVSLEAHEVMRPDIVIPT 1250
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 23.7 bits (51), Expect = 4.8
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 39 WTKKLNPLFYNNHKIPTYILVVPT 62
W K+ + HK+ + +V+PT
Sbjct: 1264 WKNKVPSVEVETHKVASPDVVIPT 1287
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.424
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 973,377
Number of extensions: 41577
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 15
Length of query: 63
Length of database: 6,701,793
Length adjustment: 34
Effective length of query: 29
Effective length of database: 5,752,479
Effective search space: 166821891
Effective search space used: 166821891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)