RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12909
         (63 letters)



>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 39.0 bits (90), Expect = 5e-06
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKI 53
           M  I + +      P    FN+FF++ L+E GY  V+RW K+         KI
Sbjct: 58  MKYIEKST------PNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKI 104


>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 226

 Score = 39.0 bits (90), Expect = 7e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIP 54
           M L++ER+K++   P  + F+TFF+  L   GY  VKRWTK +N        +P
Sbjct: 57  MNLLVERNKKQ-GYPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFEQEIILVP 109


>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 225

 Score = 36.7 bits (84), Expect = 4e-05
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 1   MALIMERSKEKTDLPRAYGFNTFFHSALAEHGYSRVKRWTKKLNPLFYNNHKIP 54
           M ++MERSKEK  LP  + FNTFF + L   GY  VKRWTKK++    +   +P
Sbjct: 57  MNMLMERSKEK-GLPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVFSVDILLVP 109


>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 212

 Score = 29.7 bits (66), Expect = 0.014
 Identities = 1/58 (1%), Positives = 10/58 (17%), Gaps = 2/58 (3%)

Query: 1  MALIMERSKEKTDLPRAYGFNTFFHSAL-AEHGYSRVKRWTKKLNPLFYNNHKIPTYI 57
                     +        +      +      + +  + + L+        +    
Sbjct: 36 FEYFANSQFHDSS-DHVSFISPEVTQFIKCTSNPAEIAMFLEPLDLPNKRVVFLAIND 92


>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
          {Bacillus subtilis [TaxId: 1423]}
          Length = 249

 Score = 28.5 bits (64), Expect = 0.031
 Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 2  ALIMERSKEKTDLPRAYGF-----NTFFHSALAEHGYSRVKRWTKKL 43
          +L+ +  +EK    + +        T F   +++   +   R+    
Sbjct: 52 SLLTKDLEEKISTLKEHDITFFFGGTLFEKYVSQKKVNEFHRYCTYF 98


>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl
           phosphate synthase {Archaeon Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 231

 Score = 23.9 bits (51), Expect = 1.7
 Identities = 5/20 (25%), Positives = 6/20 (30%)

Query: 1   MALIMERSKEKTDLPRAYGF 20
             L+ E  K        YG 
Sbjct: 175 PELVAEVKKVLDKARLFYGG 194


>d1sdoa_ c.52.1.21 (A:) Restriction endonuclease BstyI {Geobacillus
           stearothermophilus [TaxId: 1422]}
          Length = 203

 Score = 22.2 bits (47), Expect = 6.6
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 42  KLNPLFYNNHKIPTYILVVPT 62
             +  FY + KI   + ++P 
Sbjct: 143 VKHMAFYVSDKIDVGVEILPM 163


>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 387

 Score = 21.8 bits (46), Expect = 9.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 15  PRAYGFNTFFHSALAEHGYS 34
           P A+ FN +F   + +H YS
Sbjct: 297 PTAFEFNEYFLITILDHLYS 316


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0483    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 240,973
Number of extensions: 8306
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 8
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)