BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12911
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 511 bits (1315), Expect = e-145, Method: Compositional matrix adjust.
Identities = 235/337 (69%), Positives = 275/337 (81%), Gaps = 2/337 (0%)
Query: 20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
KD EV S P+DSI C++FSP TLP FLIAGSW N+VRCWEV+ +G+TIPK+ Q + PV
Sbjct: 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPV 89
Query: 80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
LDV W DDG+KVF A CDKT K WDL+SNQ++Q+AQHDAPVKT HWIKAPNY+C+MTGSW
Sbjct: 90 LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW 149
Query: 140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
DKTLKFWD R+ P+M + LPERCYCADV YP+AVV TA RG+++YQLE +P EF++ ES
Sbjct: 150 DKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIES 209
Query: 200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANP-KDNFTFKCHRSNG-GAGG 257
PLK+Q+RC+AIF+DK+ +P G+ LGS+EGRVAI Y+NP NP KDNFTFKCHRSNG
Sbjct: 210 PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269
Query: 258 VQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQI 317
QDIYAVNGI FHPVHGTLATVGS+G FSFWDKDARTKLK SE +D IS C NHNG I
Sbjct: 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNI 329
Query: 318 FAYAVSYDWSKGHEHNNPNKGNAIFLRPCFEDMKPRS 354
FAYA SYDWSKGHE NP K N IFLR E++KPR+
Sbjct: 330 FAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPRN 366
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 28/293 (9%)
Query: 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM--SEPVL 80
++ P+D IS + PS + L+ SWD ++ ++ + K + +Q + P+L
Sbjct: 5 QIEQAPKDYISDIKIIPS---KSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLL 60
Query: 81 DVAWIDD-GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS 138
+ID+ ++++ + DL + S Q + ++A + C K + L+ S
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK-LIAAS 119
Query: 139 WDKTLKFWDLRT--PQPIMTINL-------PERCYCADVDYPLAVVGTAGRGIVLYQL-E 188
WD ++ D R I NL + + D + +VG + ++L
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA----NPKDNF 244
+ ES LKYQ R +A+ K+ GY S++GRVA+++ + N F
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALL---PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
F+CHR N + Y VN I F P H L T GS+G S W+ R K+K
Sbjct: 237 AFRCHRLNLKDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 28/293 (9%)
Query: 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM--SEPVL 80
++ P+D IS + PS + L+ SWD ++ ++ + K + +Q + P+L
Sbjct: 5 QIEQAPKDYISDIKIIPS---KSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLL 60
Query: 81 DVAWIDD-GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS 138
+ID+ ++++ + DL + S Q + ++A + C K + L+ S
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK-LIAAS 119
Query: 139 WDKTLKFWDLRT--PQPIMTINL-------PERCYCADVDYPLAVVGTAGRGIVLYQL-E 188
WD ++ D R I NL + + D + +VG + ++L
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA----NPKDNF 244
+ ES LKYQ R +A+ K+ GY S++GRVA+++ + N F
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALL---PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
F+CHR N + Y VN I F P H L T GS+G S W+ R K+K
Sbjct: 237 AFRCHRLNLKDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 28/293 (9%)
Query: 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM--SEPVL 80
++ P+D IS + PS + L+ SWD ++ ++ + K + +Q + P+L
Sbjct: 5 QIEQAPKDYISDIKIIPS---KSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLL 60
Query: 81 DVAWIDD-GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS 138
+ID+ ++++ + DL + S Q + ++A + C K + L+ S
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK-LIAAS 119
Query: 139 WDKTLKFWDLRT--PQPIMTINL-------PERCYCADVDYPLAVVGTAGRGIVLYQL-E 188
WD ++ D R I NL + + D + +VG + ++L
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA----NPKDNF 244
+ ES LKYQ R +A+ K+ GY S++GRVA+++ + N F
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALL---PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
F+CHR N + Y VN I F P H L T GS+G S W+ R K+K
Sbjct: 237 AFRCHRLNLKDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 28/293 (9%)
Query: 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGM--SEPVL 80
++ P+D IS + PS + L+ SWD ++ ++ + K + +Q + P+L
Sbjct: 5 QIEQAPKDYISDIKIIPS---KSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLL 60
Query: 81 DVAWIDD-GTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGS 138
+ID+ ++++ + DL + S Q + ++A + C K + L+ S
Sbjct: 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK-LIAAS 119
Query: 139 WDKTLKFWDLRT--PQPIMTINL-------PERCYCADVDYPLAVVGTAGRGIVLYQL-E 188
WD ++ D R I NL + + D + +VG + ++L
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTXDTNSSRLIVGXNNSQVQWFRLPL 179
Query: 189 GKPQEFKKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPA----NPKDNF 244
+ ES LKYQ R +A+ K+ GY S++GRVA+++ + N F
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALL---PKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 245 TFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLK 297
F+CHR N + Y VN I F P H L T GS+G S W+ R K+K
Sbjct: 237 AFRCHRLNLKDTNLA--YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L A S D ++ W +GK K++ G + DVAW D
Sbjct: 28 AVSSVKFSPN---GEWLAASSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 82
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 140
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 141 TGKCLKTL 148
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 113 VFCCNFNPQS---NLIVSGSFDESVRIWDVKT-GKCL-KTLPAHSDPVSAVHFNRDGSLI 167
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 225
Query: 150 TPQPIMT-INLPERCYCADVDYPLAVVGTAGRGIV 183
+ + T YC ++ + T G+ IV
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSV----TGGKWIV 256
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 166 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 225 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 28 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 82
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 140
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 141 TGKCLKTL 148
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 113 VFCCNFNPQS---NLIVSGSFDESVRIWDVKT-GKCL-KTLPAHSDPVSAVHFNRDGSLI 167
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 225
Query: 150 TPQPIMT-INLPERCYCADVDYPLAVVGTAGRGIV 183
+ + T YC ++ + T G+ IV
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSV----TGGKWIV 256
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 166 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 225 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 28 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 82
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 140
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 141 TGKCLKTL 148
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 113 VFCCNFNPQS---NLIVSGSFDESVRIWDVKT-GKCL-KTLPAHSDPVSAVHFNRDGSLI 167
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 225
Query: 150 TPQPIMT-INLPERCYCADVDYPLAVVGTAGRGIV 183
+ + T YC ++ + T G+ IV
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSV----TGGKWIV 256
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 166 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 225 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 49 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 103
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 161
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 162 TGKCLKTL 169
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 134 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 188
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 189 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 246
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 247 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 293
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 187 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 246 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 299
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 31 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 85
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 143
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 144 TGKCLKTL 151
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 116 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 170
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 228
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 169 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 228 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 31 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 85
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 143
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 144 TGKCLKTL 151
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 116 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 170
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 228
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 169 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 228 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 47 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 101
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 159
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 160 TGKCLKTL 167
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 132 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 186
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHD--APVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 187 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 244
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 291
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 185 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 244 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 297
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 42 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 96
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 154
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 155 TGKCLKTL 162
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 127 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 181
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 182 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 239
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 240 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 286
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 180 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 238
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 239 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 292
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 26 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 80
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 138
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 139 TGKCLKTL 146
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 111 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 165
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 166 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 223
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 224 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 270
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 164 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 222
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 223 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 276
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 30 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 84
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 142
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 143 TGKCLKTL 150
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 115 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 169
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 170 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 227
Query: 150 TPQPIMT-INLPERCYCADVDYPLAVVGTAGRGIV 183
+ + T YC ++ + T G+ IV
Sbjct: 228 KGKCLKTYTGHKNEKYCIFANFSV----TGGKWIV 258
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 168 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 226
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 227 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 280
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 24 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 78
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 136
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 137 TGKCLKTL 144
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 109 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 163
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 164 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 221
Query: 150 TPQPIMT-INLPERCYCADVDYPLAVVGTAGRGIV 183
+ + T YC ++ + T G+ IV
Sbjct: 222 KGKCLKTYTGHKNEKYCIFANFSV----TGGKWIV 252
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 162 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 220
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 221 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 274
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 31 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 85
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 143
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 144 TGKCLKTL 151
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 116 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 170
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 171 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 228
Query: 150 TPQPIMT-INLPERCYCADVDYPLAVVGTAGRGIV 183
+ + T YC ++ + T G+ IV
Sbjct: 229 KGKCLKTYTGHKNEKYCIFANFSV----TGGKWIV 259
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 169 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 227
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 228 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 25 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 79
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 137
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 138 TGKCLKTL 145
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 110 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 164
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 222
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 163 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 222 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 25 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 79
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 137
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 138 TGKCLKTL 145
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 110 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 164
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 222
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 223 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 163 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 222 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 21 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 75
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 133
Query: 150 TPQPIMTI 157
T + + T+
Sbjct: 134 TGKCLKTL 141
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ GK + K++ S+PV V + DG+ +
Sbjct: 106 VFCCNFNPQS---NLIVSGSFDESVRIWDVK-TGKCL-KTLPAHSDPVSAVHFNRDGSLI 160
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 161 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 218
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 219 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 265
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 159 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 217
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 218 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 271
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 28 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 82
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 140
Query: 150 TPQPIMTI 157
T + T+
Sbjct: 141 TGMCLKTL 148
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ K++ S+PV V + DG+ +
Sbjct: 113 VFCCNFNPQS---NLIVSGSFDESVRIWDVKTG--MCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D LK WD
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNDLKLWDYS 225
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D +K WD
Sbjct: 166 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDY 224
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 225 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++S + FSP+ +L + S D ++ W +GK K++ G + DVAW D
Sbjct: 28 AVSSVKFSPN---GEWLASSSADKLIKIWGAY-DGK-FEKTISGHKLGISDVAWSSDSNL 82
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ A DKT+K WD++S + ++ + H V C++ P +++GS+D++++ WD++
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVK 140
Query: 150 TPQPIMTI 157
T + T+
Sbjct: 141 TGMCLKTL 148
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 15/167 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ C F+P + +++GS+D +VR W+V+ K++ S+PV V + DG+ +
Sbjct: 113 VFCCNFNPQS---NLIVSGSFDESVRIWDVKTG--MCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDA--PVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ D + WD AS Q ++ D PV + +PN ++ + D TLK WD
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF--SPNGKYILAATLDNTLKLWDYS 225
Query: 150 TPQPIMT-INLPERCYCADVDYPLA-----VVGTAGRGIVLYQLEGK 190
+ + T YC ++ + V G+ + ++ L+ K
Sbjct: 226 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+++ S+D R W+ +G+ + + + PV V + +G + A D T+K WD
Sbjct: 166 LIVSSSYDGLCRIWDT-ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 224
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTC-----LMTGSWDKTLKFWDLRTPQPIMTI 157
+ + ++ K C + N++ +++GS D + W+L+T + + +
Sbjct: 225 SKGKCLKTYTGHKNEKYCIF---ANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 128/308 (41%), Gaps = 40/308 (12%)
Query: 20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPV 79
K+ + S+ +AFSP + + S D V+ W NG+ + +++ G S V
Sbjct: 7 KERNRLEAHSSSVRGVAFSP---DGQTIASASDDKTVKLWN--RNGQLL-QTLTGHSSSV 60
Query: 80 LDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSW 139
VA+ DG + A DKTVK W+ + H + V+ + +P+ + + S
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF--SPDGQTIASASD 118
Query: 140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
DKT+K W+ R Q + T+ + +V G A + +G+ +
Sbjct: 119 DKTVKLWN-RNGQLLQTL----------TGHSSSVWGVA------FSPDGQTIASASDDK 161
Query: 200 PLKYQNRCIAIFRDKKKQPAG-YGLG-SVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGG 257
+K NR + + + +G+ S +G+ A+ D+ T K NG
Sbjct: 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI------ASASDDKTVKLWNRNGQL-- 213
Query: 258 VQDIY----AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNH 313
+Q + +V G+ F P T+A+ + T W+++ + L+ S++ A
Sbjct: 214 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRP 272
Query: 314 NGQIFAYA 321
+GQ A A
Sbjct: 273 DGQTIASA 280
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 130/310 (41%), Gaps = 48/310 (15%)
Query: 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLD 81
+ ++ S+ +AFSP + + S D V+ W NG+ + +++ G S V
Sbjct: 50 LQTLTGHSSSVWGVAFSP---DGQTIASASDDKTVKLWN--RNGQLL-QTLTGHSSSVRG 103
Query: 82 VAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKA--PNYTCLMTGSW 139
VA+ DG + A DKTVK W N++ Q+ Q + W A P+ + + S
Sbjct: 104 VAFSPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 159
Query: 140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
DKT+K W+ R Q + T+ + +V G A + +G+ +
Sbjct: 160 DKTVKLWN-RNGQLLQTL----------TGHSSSVWGVA------FSPDGQTIASASDDK 202
Query: 200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI----QYVNPANPKDNFTFKCHRSNGGA 255
+K NR + + + SV G VA Q + A+ D+ T K NG
Sbjct: 203 TVKLWNRNGQLLQTLTGHSS-----SVRG-VAFSPDGQTI--ASASDDKTVKLWNRNGQL 254
Query: 256 GGVQDIY----AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL 311
+Q + +VNG+ F P T+A+ + T W+++ + L+ S+ A
Sbjct: 255 --LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAF 311
Query: 312 NHNGQIFAYA 321
+ +GQ A A
Sbjct: 312 SPDGQTIASA 321
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 118/302 (39%), Gaps = 28/302 (9%)
Query: 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLD 81
+ ++ S+ +AFSP + + S D V+ W NG+ + +++ G S V
Sbjct: 296 LQTLTGHSSSVWGVAFSP---DGQTIASASDDKTVKLWN--RNGQHL-QTLTGHSSSVWG 349
Query: 82 VAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDK 141
VA+ DG + A DKTVK W+ + H + V+ + +P+ + + S DK
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF--SPDGQTIASASDDK 407
Query: 142 TLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTESPL 201
T+K W+ R Q + T+ P + +L + + +T +
Sbjct: 408 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGH 466
Query: 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI 261
R +A P G + S ++ N N + T H S
Sbjct: 467 SSSVRGVAF------SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS---------- 509
Query: 262 YAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCALNHNGQIFAYA 321
+V G+ F P T+A+ + T W+++ + L+ S+ A + +GQ A A
Sbjct: 510 -SVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASA 567
Query: 322 VS 323
S
Sbjct: 568 SS 569
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 129/310 (41%), Gaps = 48/310 (15%)
Query: 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLD 81
+ ++ S+ +AFSP + + S D V+ W NG+ + +++ G S V
Sbjct: 214 LQTLTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWN--RNGQLL-QTLTGHSSSVNG 267
Query: 82 VAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKA--PNYTCLMTGSW 139
VA+ DG + A DKTVK W N++ Q+ Q + W A P+ + + S
Sbjct: 268 VAFRPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323
Query: 140 DKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEFKKTES 199
DKT+K W+ R Q + T+ + +V G A + +G+ +
Sbjct: 324 DKTVKLWN-RNGQHLQTL----------TGHSSSVWGVA------FSPDGQTIASASDDK 366
Query: 200 PLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAI----QYVNPANPKDNFTFKCHRSNGGA 255
+K NR + + + SV G VA Q + A+ D+ T K NG
Sbjct: 367 TVKLWNRNGQLLQTLTGHSS-----SVRG-VAFSPDGQTI--ASASDDKTVKLWNRNGQL 418
Query: 256 GGVQDIY----AVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMDMSISTCAL 311
+Q + +V G+ F P T+A+ + T W+++ + L+ S+ A
Sbjct: 419 --LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAF 475
Query: 312 NHNGQIFAYA 321
+ +GQ A A
Sbjct: 476 SPDGQTIASA 485
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLD 81
+ ++ S+ +AFSP + + S D V+ W NG+ + +++ G S V
Sbjct: 460 LQTLTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWN--RNGQLL-QTLTGHSSSVRG 513
Query: 82 VAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKA--PNYTCLMTGSW 139
VA+ DG + A DKTVK W N++ Q+ Q + W A P+ + + S
Sbjct: 514 VAFSPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASS 569
Query: 140 DKTLKFWD 147
DKT+K W+
Sbjct: 570 DKTVKLWN 577
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDG 88
D +SC+ FSP+TL Q +++ SWD V+ W + N K + ++ G + V VA DG
Sbjct: 517 RDWVSCVRFSPNTL-QPTIVSASWDKTVKVWNLS-NCK-LRSTLAGHTGYVSTVAVSPDG 573
Query: 89 TKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
+ G D V WDLA + + + ++ + + + C T + +K WDL
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT---EHGIKIWDL 630
Query: 149 RTPQPI--MTINLPERCYCADVDYPLA 173
+ + + ++L AD P A
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAA 657
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
F ++GSWD +R W++ T + G ++ VL VA+ D ++ A D+T+K W+
Sbjct: 444 FALSGSWDGELRLWDLAAGVST--RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYT------CLMTGSWDKTLKFWDL 148
+++ + W+ ++ +++ SWDKT+K W+L
Sbjct: 502 LGECKYTISEGGEGHR--DWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 46 FLIAGSWDNNVRCWEVEPNGK---TIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
+++ S D ++ W++ + K + + G S V DV DG D ++
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 103 WDLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
WDLA+ S + H V + + + + +++ S D+T+K W+
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAF--SLDNRQIVSASRDRTIKLWN 500
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVA 83
VV P D++ FS Q G+ D ++ ++ E K + ++ + VL A
Sbjct: 617 VVRPHTDAVYHACFSQD--GQRIASCGA-DKTLQVFKAETGEKLL--DIKAHEDEVLCCA 671
Query: 84 WIDDGTKVFMAGCDKTVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKT 142
+ D + + DK VK WD A+ + + +H V CH+ N+ L TGS D
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 143 LKFWDLRTPQ 152
LK WDL +
Sbjct: 732 LKLWDLNQKE 741
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Query: 25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAW 84
+ ED + C AFS ++ S D V+ W+ GK + + SE V +
Sbjct: 660 IKAHEDEVLCCAFSSD---DSYIATCSADKKVKIWD-SATGKLV-HTYDEHSEQVNCCHF 714
Query: 85 IDDGTKVFMA--GCDKTVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDK 141
+ + +A D +K WDL + H V C + +P+ L + S D
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF--SPDDELLASCSADG 772
Query: 142 TLKFWDLRTPQPIMTINLPERCYCADVDYP 171
TL+ WD+R+ +IN+ +R + + D P
Sbjct: 773 TLRLWDVRSANERKSINV-KRFFLSSEDPP 801
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD 87
PE +SC SP ++ G D ++ E+ PN + + G + V + + D
Sbjct: 967 PEAQVSCCCLSPHL---EYVAFGDEDGAIKIIEL-PNNRVFSSGV-GHKKAVRHIQFTAD 1021
Query: 88 GTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
G + + D ++ W+ + + + H VK ++ L++ S+D T+K W+
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR---LLSWSFDGTVKVWN 1078
Query: 148 LRT 150
+ T
Sbjct: 1079 VIT 1081
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW--D 104
L++ S+D V+ W V G+ I + VL A D TK DKT K W D
Sbjct: 1065 LLSWSFDGTVKVWNV-ITGR-IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
Query: 105 LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI 154
L S ++ H+ V+ + + + L TG + ++ W++ Q +
Sbjct: 1123 LLSPLH-ELKGHNGCVRCSAF--SLDGILLATGDDNGEIRIWNVSDGQLL 1169
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Query: 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVA 83
VV P D++ FS Q G+ D ++ ++ E K + ++ + VL A
Sbjct: 610 VVRPHTDAVYHACFSQD--GQRIASCGA-DKTLQVFKAETGEKLL--DIKAHEDEVLCCA 664
Query: 84 WIDDGTKVFMAGCDKTVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKT 142
+ D + + DK VK WD A+ + + +H V CH+ N+ L TGS D
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 143 LKFWDLRTPQ 152
LK WDL +
Sbjct: 725 LKLWDLNQKE 734
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Query: 25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAW 84
+ ED + C AFS ++ S D V+ W+ GK + + SE V +
Sbjct: 653 IKAHEDEVLCCAFSSD---DSYIATCSADKKVKIWD-SATGKLV-HTYDEHSEQVNCCHF 707
Query: 85 IDDGTKVFMA--GCDKTVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDK 141
+ + +A D +K WDL + H V C + +P+ L + S D
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF--SPDDELLASCSADG 765
Query: 142 TLKFWDLRTPQPIMTINLPERCYCADVDYP 171
TL+ WD+R+ +IN+ +R + + D P
Sbjct: 766 TLRLWDVRSANERKSINV-KRFFLSSEDPP 794
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 28 PEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDD 87
PE +SC SP ++ G D ++ E+ PN + + G + V + + D
Sbjct: 960 PEAQVSCCCLSPHL---EYVAFGDEDGAIKIIEL-PNNRVFSSGV-GHKKAVRHIQFTAD 1014
Query: 88 GTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
G + + D ++ W+ + + + H VK ++ L++ S+D T+K W+
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR---LLSWSFDGTVKVWN 1071
Query: 148 LRT 150
+ T
Sbjct: 1072 VIT 1074
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCW--D 104
L++ S+D V+ W V G+ I + VL A D TK DKT K W D
Sbjct: 1058 LLSWSFDGTVKVWNV-ITGR-IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
Query: 105 LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI 154
L S ++ H+ V+ + + + L TG + ++ W++ Q +
Sbjct: 1116 LLSPLH-ELKGHNGCVRCSAF--SLDGILLATGDDNGEIRIWNVSDGQLL 1162
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
F ++ SWD+++R W ++ NG+ K + G ++ VL VA+ D ++ G D ++ W++
Sbjct: 81 FAVSASWDHSLRLWNLQ-NGQCQYKFL-GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV 138
Query: 106 ASN--QSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI 157
++ H V + + + +++G WD +K WDL T + + +
Sbjct: 139 KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL 192
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 15/175 (8%)
Query: 22 FEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLD 81
++ + +D +S +AFSP +++G DN +R W V+ G+ + +G +
Sbjct: 103 YKFLGHTKDVLS-VAFSPDNRQ---IVSGGRDNALRVWNVK--GECMHTLSRGAHTDWVS 156
Query: 82 VAWID---DGTKVFMAGCDKTVKCWDLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTG 137
D + G D VK WDLA+ + + + H V + +P+ + +
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSV--TVSPDGSLCASS 214
Query: 138 SWDKTLKFWDLRTPQPI--MTINLPERCYCADVDYPLAVVGTAGRGIVLYQLEGK 190
D + WDL + + M P C + T +GI ++ LE K
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATE-KGIRIFDLENK 268
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 70 KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ-SMQVAQHDAPVKTCHWIKA 128
+ ++G S V DVA ++G A D +++ W+L + Q + H V + + +
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF--S 118
Query: 129 PNYTCLMTGSWDKTLKFWDLR 149
P+ +++G D L+ W+++
Sbjct: 119 PDNRQIVSGGRDNALRVWNVK 139
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 20/146 (13%)
Query: 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPK------SMQGMSEPVLDV 82
ED ++ +A SP ++ AGS D VR W+ E G + + S G + V V
Sbjct: 206 EDGVTTVAVSPG--DGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSV 262
Query: 83 AWIDDGTKVFMAGCDKTVKCWDL--ASNQSMQVAQHDAPVKTCHW---------IKAPNY 131
+ DG V D++VK W+L A+N+S + + + N
Sbjct: 263 VFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND 322
Query: 132 TCLMTGSWDKTLKFWDLRTPQPIMTI 157
+++GS D+ + FWD ++ P++ +
Sbjct: 323 EYILSGSKDRGVLFWDKKSGNPLLML 348
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 69 PKSMQGMSEPVLD-----VAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKT 122
P+++ S P D V + DG + D+ ++ WD+ + + + + Q H+ + +
Sbjct: 111 PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 170
Query: 123 CHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE 161
+ P+ L++GS D+T++ WDLRT Q +T+++ +
Sbjct: 171 LDYF--PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED 207
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 25/184 (13%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI-DDGTKVFMAGCDKTVKCWDL 105
L++GS D VR W++ ++ S++ + V VA DG + D+ V+ WD
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIE---DGVTTVAVSPGDGKYIAAGSLDRAVRVWD- 235
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMT--------GSWDKTLKFWDLRTPQPIMTI 157
S V + D+ ++ K Y+ + T GS D+++K W+L+
Sbjct: 236 -SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294
Query: 158 NLP-----ERCYCADVDYPLAVVGTAGRGIVLYQLEGKPQEF--KKTESPL----KYQNR 206
P E Y D+ L+V T +L + + F KK+ +PL ++N
Sbjct: 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354
Query: 207 CIAI 210
I++
Sbjct: 355 VISV 358
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 18/140 (12%)
Query: 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVE----------PNGKTIPKSMQGMSEP 78
+DS+ + F T +++GS D +V+ W ++ PN T + G +
Sbjct: 256 KDSVYSVVF---TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 79 VLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKA----PNYTC 133
VL VA + + D+ V WD S + + Q H V + P Y
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 134 LMTGSWDKTLKFWDLRTPQP 153
TGS D + W + P
Sbjct: 373 FATGSGDCKARIWKYKKIAP 392
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
F ++GSWD +R W++ T + G ++ VL VA+ D ++ DKT+K W+
Sbjct: 100 FALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157
Query: 106 AS--NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
++Q H V + + +++ WDK +K W+L
Sbjct: 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 40 STLPQY--FLIAGSWDNNVRCWEV---EPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA 94
+T PQ+ +++ S D + W++ E N ++++G S V DV DG
Sbjct: 45 ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104
Query: 95 GCDKTVKCWDLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
D T++ WDL + + + H V + + + + +++GS DKT+K W+
Sbjct: 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF--SSDNRQIVSGSRDKTIKLWN 156
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIK----APNYTCLMTGSWDKTLKFW 146
+ A DKT+ W L +++ A H++ + + ++GSWD TL+ W
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 113
Query: 147 DLRT 150
DL T
Sbjct: 114 DLTT 117
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-------GMSEP--VL 80
D I+ + FSP+ +Y+L A + +++ W++E GK I ++ +EP
Sbjct: 257 DIINALCFSPN---RYWLCAAT-GPSIKIWDLE--GKIIVDELKQEVISTSSKAEPPQCT 310
Query: 81 DVAWIDDGTKVFMAGCDKTVKCWDLA 106
+AW DG +F D V+ W +
Sbjct: 311 SLAWSADGQTLFAGYTDNLVRVWQVT 336
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
F ++GSWD +R W++ T + G ++ VL VA+ D ++ DKT+K W+
Sbjct: 77 FALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 134
Query: 106 --ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
++Q H V + + +++ WDK +K W+L
Sbjct: 135 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 8/114 (7%)
Query: 40 STLPQY--FLIAGSWDNNVRCWEV---EPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMA 94
+T PQ+ +++ S D + W++ E N ++++G S V DV DG
Sbjct: 22 ATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 81
Query: 95 GCDKTVKCWDLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWD 147
D T++ WDL + + + H V + + + + +++GS DKT+K W+
Sbjct: 82 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF--SSDNRQIVSGSRDKTIKLWN 133
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIK----APNYTCLMTGSWDKTLKFW 146
+ A DKT+ W L +++ A H++ + + ++GSWD TL+ W
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW 90
Query: 147 DLRT 150
DL T
Sbjct: 91 DLTT 94
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQ-------GMSEP--VL 80
D I+ + FSP+ +Y+L A + +++ W++E GK I ++ +EP
Sbjct: 234 DIINALCFSPN---RYWLCAAT-GPSIKIWDLE--GKIIVDELKQEVISTSSKAEPPQCT 287
Query: 81 DVAWIDDGTKVFMAGCDKTVKCWDLA 106
+AW DG +F D V+ W +
Sbjct: 288 SLAWSADGQTLFAGYTDNLVRVWQVT 313
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 21/130 (16%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106
+++ S D ++ WEV+ G + K+ G E V V DGT + D+TV+ W +A
Sbjct: 207 IVSASRDKTIKMWEVQ-TGYCV-KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264
Query: 107 SNQ-SMQVAQHDAPVKTCHWIKAPNYTC------------------LMTGSWDKTLKFWD 147
+ + ++ +H V+ W +Y+ L++GS DKT+K WD
Sbjct: 265 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Query: 148 LRTPQPIMTI 157
+ T +MT+
Sbjct: 325 VSTGMCLMTL 334
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 10/138 (7%)
Query: 27 PPEDSISCMAFSPSTLPQY-----FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLD 81
PPE SP T + +++ S D ++ W+ E ++++G ++ V D
Sbjct: 98 PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGHTDSVQD 155
Query: 82 VAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWD 140
+++ G + D T+K WD + ++ HD V + + PN +++ S D
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM--PNGDHIVSASRD 213
Query: 141 KTLKFWDLRTPQPIMTIN 158
KT+K W+++T + T
Sbjct: 214 KTIKMWEVQTGYCVKTFT 231
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 43 PQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
P FL++GS D ++ W+V + ++ G V V + G + DKT++
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLM--TLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 103 WDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD + + M+ H+ V + + K Y ++TGS D+T+K W+ R
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPY--VVTGSVDQTVKVWECR 410
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 97 DKTVKCWDLASNQS-MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIM 155
DKT+K WD+++ M + HD V+ + + +++ + DKTL+ WD + + +
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF--ILSCADDKTLRVWDYKNKRCMK 374
Query: 156 TINLPERCYCADVDY----PLAVVGTAGRGIVLYQ 186
T+N E + +D+ P V G+ + + +++
Sbjct: 375 TLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 239 NPKDNFTFKCHRSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKP 298
P + + HRS V ++FHPV + + + T WD + +
Sbjct: 97 RPPEKYALSGHRS-----------PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT 145
Query: 299 SEAMDMSISTCALNHNGQIFA 319
+ S+ + +H+G++ A
Sbjct: 146 LKGHTDSVQDISFDHSGKLLA 166
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 11/153 (7%)
Query: 25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVL--DV 82
V+ + +S +F+ S + ++ S D W+VE + +S G VL D+
Sbjct: 150 VAMHTNYLSACSFTNSDMQ---ILTASGDGTCALWDVESG--QLLQSFHGHGADVLCLDL 204
Query: 83 AWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDK 141
A + G GCDK WD+ S Q +Q + H++ V + + P+ +GS D
Sbjct: 205 APSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYY--PSGDAFASGSDDA 262
Query: 142 TLKFWDLRTPQPIMTINLPERCYCA-DVDYPLA 173
T + +DLR + + + + A VD+ L+
Sbjct: 263 TCRLYDLRADREVAIYSKESIIFGASSVDFSLS 295
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 49 AGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN 108
+GS D R +++ + + S + + V + G +F D T+ WD+
Sbjct: 257 SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316
Query: 109 QSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW 146
+ + H+ V T +P+ T +GSWD TL+ W
Sbjct: 317 SRVSILFGHENRVSTLR--VSPDGTAFCSGSWDHTLRVW 353
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 9/147 (6%)
Query: 20 KDFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCW----EVEPNGKTIPKSMQGM 75
K+ V P ++C A++PS + G DN + + N KS+
Sbjct: 98 KEHAVTMPCTWVMAC-AYAPSGCA---IACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH 153
Query: 76 SEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCL 134
+ + ++ + ++ A D T WD+ S Q +Q H A V +
Sbjct: 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213
Query: 135 MTGSWDKTLKFWDLRTPQPIMTINLPE 161
++G DK WD+R+ Q + E
Sbjct: 214 VSGGCDKKAMVWDMRSGQCVQAFETHE 240
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89
D I +A P T P ++++GS D V+ W E N + ++ +G V+ VA+
Sbjct: 98 DYIRSIAVHP-TKP--YVLSGSDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 90 KVFMAGC-DKTVKCWDLAS---NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145
F +GC D+TVK W L N ++ Q V + P+ ++T S D T+K
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERG-VNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 146 WDLRTPQPIMTI 157
WD +T + T+
Sbjct: 213 WDYQTKSCVATL 224
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEV---EPNGKTIPKSMQGMSEPVLDVAWI 85
E + C+AF+P P F +G D V+ W + PN +G++ +D +
Sbjct: 140 EHFVMCVAFNPKD-PSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN--YVDYYPL 195
Query: 86 DDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
D + A D T+K WD + + + H + V + P +++GS D TLK
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA--VFHPTLPIIISGSEDGTLK 253
Query: 145 FWDLRTPQPIMTINLP-ERCYC 165
W+ T + T+N+ ER +C
Sbjct: 254 IWNSSTYKVEKTLNVGLERSWC 275
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
++I GS D +R + K + + + + +A V D TVK W+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 106 ASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCY 164
+N ++ Q + C + + +G D+T+K W L P T+ +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 165 CADVDY 170
VDY
Sbjct: 187 VNYVDY 192
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89
D I +A P+ + ++++GS D V+ W E N + ++ +G V+ VA+
Sbjct: 98 DYIRSIAVHPT---KPYVLSGSDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 90 KVFMAGC-DKTVKCWDLAS---NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145
F +GC D+TVK W L N ++ Q V + P+ ++T S D T+K
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERG-VNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 146 WDLRTPQPIMTI 157
WD +T + T+
Sbjct: 213 WDYQTKSCVATL 224
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEV---EPNGKTIPKSMQGMSEPVLDVAWI 85
E + C+AF+P P F +G D V+ W + PN +G++ +D +
Sbjct: 140 EHFVMCVAFNPKD-PSTF-ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN--YVDYYPL 195
Query: 86 DDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
D + A D T+K WD + + + H + V + P +++GS D TLK
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA--VFHPTLPIIISGSEDGTLK 253
Query: 145 FWDLRTPQPIMTINLP-ERCYC 165
W+ T + T+N+ ER +C
Sbjct: 254 IWNSSTYKVEKTLNVGLERSWC 275
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
++I GS D +R + K + + + + +A V D TVK W+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 106 ASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCY 164
+N ++ Q + C + + +G D+T+K W L P T+ +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 165 CADVDY 170
VDY
Sbjct: 187 VNYVDY 192
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89
D I +A P+ + ++++GS D V+ W E N + ++ +G V+ VA+
Sbjct: 98 DYIRSIAVHPT---KPYVLSGSDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 90 KVFMAGC-DKTVKCWDLAS---NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145
F +GC D+TVK W L N ++ Q V + P+ ++T S D T+K
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERG-VNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 146 WDLRTPQPIMTI 157
WD +T + T+
Sbjct: 213 WDYQTKSCVATL 224
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEV---EPNGKTIPKSMQGMSEPVLDVAWI 85
E + C+AF+P P F +G D V+ W + PN +G++ +D +
Sbjct: 140 EHFVMCVAFNPKD-PSTFA-SGCLDRTVKVWSLGQSTPNFTLTTGQERGVN--YVDYYPL 195
Query: 86 DDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
D + A D T+K WD + + + H + V + P +++GS D TLK
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA--VFHPTLPIIISGSEDGTLK 253
Query: 145 FWDLRTPQPIMTINL-PERCYC 165
W+ T + T+N+ ER +C
Sbjct: 254 IWNSSTYKVEKTLNVGLERSWC 275
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
++I GS D +R + K + + + + +A V D TVK W+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 106 ASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCY 164
+N ++ Q + C + + +G D+T+K W L P T+ +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 165 CADVDY 170
VDY
Sbjct: 187 VNYVDY 192
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 30 DSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGT 89
D I +A P+ + ++++GS D V+ W E N + ++ +G V+ VA+
Sbjct: 98 DYIRSIAVHPT---KPYVLSGSDDLTVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDP 153
Query: 90 KVFMAGC-DKTVKCWDLAS---NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145
F +GC D+TVK W L N ++ Q V + P+ ++T S D T+K
Sbjct: 154 STFASGCLDRTVKVWSLGQSTPNFTLTTGQERG-VNYVDYYPLPDKPYMITASDDLTIKI 212
Query: 146 WDLRTPQPIMTI 157
WD +T + T+
Sbjct: 213 WDYQTKSCVATL 224
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 29 EDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEV---EPNGKTIPKSMQGMSEPVLDVAWI 85
E + C+AF+P P F +G D V+ W + PN +G++ +D +
Sbjct: 140 EHFVMCVAFNPKD-PSTFA-SGCLDRTVKVWSLGQSTPNFTLTTGQERGVN--YVDYYPL 195
Query: 86 DDGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
D + A D T+K WD + + + H + V + P +++GS D TLK
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA--VFHPTLPIIISGSEDGTLK 253
Query: 145 FWDLRTPQPIMTINL-PERCYC 165
W+ T + T+N+ ER +C
Sbjct: 254 IWNSSTYKVEKTLNVGLERSWC 275
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
++I GS D +R + K + + + + +A V D TVK W+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVV--DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 106 ASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCY 164
+N ++ Q + C + + +G D+T+K W L P T+ +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 165 CADVDY 170
VDY
Sbjct: 187 VNYVDY 192
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106
+++G++D V+ W+ P +T ++QG + V + + DG V D +++ WD+
Sbjct: 252 VVSGAYDFMVKVWD--PETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE 307
Query: 107 SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPER 162
+ + + + +K L++G+ D T+K WD++T Q + T+ P +
Sbjct: 308 TGNCIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNK 360
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 14/120 (11%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKTVKCWDL 105
+++GS D ++R W+VE G I ++ G + D+ + ++G D TVK WD+
Sbjct: 292 VVSGSLDTSIRVWDVET-GNCI-HTLTGHQSLTSGMELKDN---ILVSGNADSTVKIWDI 346
Query: 106 ASNQSMQVAQ----HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPE 161
+ Q +Q Q H + V + N ++T S D T+K WDL+T + I + E
Sbjct: 347 KTGQCLQTLQGPNKHQSAVTCLQF----NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 402
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
++ CM L + +++GS D +R W++E G+ + M G V V + DG +
Sbjct: 201 TVRCMH-----LHEKRVVSGSRDATLRVWDIET-GQCLHVLM-GHVAAVRCVQY--DGRR 251
Query: 91 VFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
V D VK WD + + Q H V + + + +++GS D +++ WD+
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF----DGIHVVSGSLDTSIRVWDVE 307
Query: 150 TPQPIMTIN 158
T I T+
Sbjct: 308 TGNCIHTLT 316
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
I+C+ F + + ++GS DN ++ W GK + +++ G + V D+ +
Sbjct: 122 ITCLQFCGNRI-----VSGSDDNTLKVWSA-VTGKCL-RTLVGHTGGVWSSQMRDN--II 172
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT 150
D+T+K W+ + + + H + V+ H + +++GS D TL+ WD+ T
Sbjct: 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR----VVSGSRDATLRVWDIET 228
Query: 151 PQPIMTI 157
Q + +
Sbjct: 229 GQCLHVL 235
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 69 PKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ-VAQHDAPVKTCHWIK 127
PK ++G + V+ G ++ D T+K W + + ++ + H V W
Sbjct: 111 PKVLKGHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSS 165
Query: 128 APNYTCLMTGSWDKTLKFWDLRTPQPIMTI 157
+++GS D+TLK W+ T + I T+
Sbjct: 166 QMRDNIIISGSTDRTLKVWNAETGECIHTL 195
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
L++ S D + W++ + + +P +S +G S V D DG A DKT++
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD+A+ ++ Q H + V + K + +++GS DKT+K W ++
Sbjct: 92 WDVATGETYQRFVGHKSDVXSVDIDKKA--SXIISGSRDKTIKVWTIK 137
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 12/126 (9%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI------DDGTKVFMAGCDKTV 100
+I+GS D ++ W ++ G+ + ++ G ++ V V + DD + AG DK V
Sbjct: 122 IISGSRDKTIKVWTIK--GQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXV 178
Query: 101 KCWDLASNQ-SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL 159
K W+L Q H++ + T +P+ T + + D + W+L + T++
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 160 PERCYC 165
+ +
Sbjct: 237 QDEVFS 242
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 91 VFMAGCDKTVKCWDLASNQS------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
+ A DKT+ W L + H V+ C Y ++ SWDKTL+
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA--LSASWDKTLR 90
Query: 145 FWDLRTPQPIMT-INLPERCYCADVDYPLAVV--GTAGRGIVLYQLEGK 190
WD+ T + + D+D + + G+ + I ++ ++G+
Sbjct: 91 LWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQ 139
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWD 104
+ ++ SWD +R W+V G+T + + G V V ID ++G DKT+K W
Sbjct: 79 YALSASWDKTLRLWDV-ATGETYQRFV-GHKSDVXSVD-IDKKASXIISGSRDKTIKVWT 135
Query: 105 LASNQSMQVAQHDAPVKTCHWI---KAPNYTC-LMTGSWDKTLKFWDLRTPQ 152
+ + H+ V + KA + + +++ DK +K W+L Q
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 71 SMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASN-QSMQVAQHDAPVKTCHWIK-A 128
++QG S V +AW DG ++ G D V+ WD S+ H+A VK W
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 129 PNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158
N G+ DK + FW+ T + T++
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVD 301
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
L++ S D + W++ + + +P +S +G S V D DG A DKT++
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD+A+ ++ Q H + V + K + +++GS DKT+K W ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK 137
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI------DDGTKVFMAGCDKT 99
+I+GS D ++ W ++ G+ + ++ G ++ V V + DD + AG DK
Sbjct: 121 MIISGSRDKTIKVWTIK--GQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 100 VKCWDLASNQ-SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158
VK W+L Q H++ + T +P+ T + + D + W+L + + T++
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 159 LPERCYC 165
+ +
Sbjct: 236 AQDEVFS 242
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWD 104
+ ++ SWD +R W+V G+T + + G V+ V ID + ++G DKT+K W
Sbjct: 79 YALSASWDKTLRLWDV-ATGETYQRFV-GHKSDVMSVD-IDKKASMIISGSRDKTIKVWT 135
Query: 105 LASNQSMQVAQHDAPVKTCHWI---KAPNYTC-LMTGSWDKTLKFWDLRTPQ 152
+ + H+ V + KA + + +++ DK +K W+L Q
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 25/222 (11%)
Query: 91 VFMAGCDKTVKCWDLASNQS------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
+ A DKT+ W L + H V+ C Y ++ SWDKTL+
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA--LSASWDKTLR 90
Query: 145 FWDLRTPQPIMT-INLPERCYCADVDYPLAVV--GTAGRGIVLYQLEGKPQEFKKTESPL 201
WD+ T + + D+D +++ G+ + I ++ ++G+ +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 150
Query: 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI 261
Q R + ++K + S ++ N + F H SN
Sbjct: 151 VSQVRVVP---NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN--------- 198
Query: 262 YAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMD 303
+N + P +A+ G +G W+ A+ + A D
Sbjct: 199 --INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
L++ S D + W++ + + +P +S +G S V D DG A DKT++
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD+A+ ++ Q H + V + K + +++GS DKT+K W ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK 137
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI------DDGTKVFMAGCDKT 99
+I+GS D ++ W ++ G+ + ++ G ++ V V + DD + AG DK
Sbjct: 121 MIISGSRDKTIKVWTIK--GQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 100 VKCWDLASNQ-SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158
VK W+L Q H++ + T +P+ T + + D + W+L + + T++
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 159 LPERCYC 165
+ +
Sbjct: 236 AQDEVFS 242
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWD 104
+ ++ SWD +R W+V G+T + + G V+ V ID + ++G DKT+K W
Sbjct: 79 YALSASWDKTLRLWDV-ATGETYQRFV-GHKSDVMSVD-IDKKASMIISGSRDKTIKVWT 135
Query: 105 LASNQSMQVAQHDAPVKTCHWI---KAPNYTC-LMTGSWDKTLKFWDLRTPQ 152
+ + H+ V + KA + + +++ DK +K W+L Q
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 25/222 (11%)
Query: 91 VFMAGCDKTVKCWDLASNQS------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
+ A DKT+ W L + H V+ C Y ++ SWDKTL+
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA--LSASWDKTLR 90
Query: 145 FWDLRTPQPIMT-INLPERCYCADVDYPLAVV--GTAGRGIVLYQLEGKPQEFKKTESPL 201
WD+ T + + D+D +++ G+ + I ++ ++G+ +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 150
Query: 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI 261
Q R + ++K + S ++ N + F H SN
Sbjct: 151 VSQVRVVP---NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN--------- 198
Query: 262 YAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMD 303
+N + P +A+ G +G W+ A+ + A D
Sbjct: 199 --INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
L++ S D + W++ + + +P +S +G S V D DG A DKT++
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD+A+ ++ Q H + V + K + +++GS DKT+K W ++
Sbjct: 86 WDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK 131
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI------DDGTKVFMAGCDKT 99
+I+GS D ++ W ++ G+ + ++ G ++ V V + DD + AG DK
Sbjct: 115 MIISGSRDKTIKVWTIK--GQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 100 VKCWDLASNQ-SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158
VK W+L Q H++ + T +P+ T + + D + W+L + + T++
Sbjct: 172 VKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 229
Query: 159 LPERCYC 165
+ +
Sbjct: 230 AQDEVFS 236
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWD 104
+ ++ SWD +R W+V G+T + + G V+ V ID + ++G DKT+K W
Sbjct: 73 YALSASWDKTLRLWDV-ATGETYQRFV-GHKSDVMSVD-IDKKASMIISGSRDKTIKVWT 129
Query: 105 LASNQSMQVAQHDAPVKTCHWI---KAPNYTC-LMTGSWDKTLKFWDLRTPQ 152
+ + H+ V + KA + + +++ DK +K W+L Q
Sbjct: 130 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 25/222 (11%)
Query: 91 VFMAGCDKTVKCWDLASNQS------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
+ A DKT+ W L + H V+ C Y ++ SWDKTL+
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA--LSASWDKTLR 84
Query: 145 FWDLRTPQPIMT-INLPERCYCADVDYPLAVV--GTAGRGIVLYQLEGKPQEFKKTESPL 201
WD+ T + + D+D +++ G+ + I ++ ++G+ +
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 144
Query: 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI 261
Q R + ++K + S ++ N + F H SN
Sbjct: 145 VSQVRVVP---NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN--------- 192
Query: 262 YAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMD 303
+N + P +A+ G +G W+ A+ + A D
Sbjct: 193 --INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 232
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
L++ S D + W++ + + +P +S +G S V D DG A DKT++
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD+A+ ++ Q H + V + K + +++GS DKT+K W ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK 137
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI------DDGTKVFMAGCDKT 99
+I+GS D ++ W ++ G+ + ++ G ++ V V + DD + AG DK
Sbjct: 121 MIISGSRDKTIKVWTIK--GQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 100 VKCWDLASNQ-SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158
VK W+L Q H++ + T +P+ T + + D + W+L + + T++
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 159 LPERCYC 165
+ +
Sbjct: 236 AQDEVFS 242
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWD 104
+ ++ SWD +R W+V G+T + + G V+ V ID + ++G DKT+K W
Sbjct: 79 YALSASWDKTLRLWDV-ATGETYQRFV-GHKSDVMSVD-IDKKASMIISGSRDKTIKVWT 135
Query: 105 LASNQSMQVAQHDAPVKTCHWI---KAPNYTC-LMTGSWDKTLKFWDLRTPQ 152
+ + H+ V + KA + + +++ DK +K W+L Q
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 25/222 (11%)
Query: 91 VFMAGCDKTVKCWDLASNQS------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
+ A DKT+ W L + H V+ C Y ++ SWDKTL+
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA--LSASWDKTLR 90
Query: 145 FWDLRTPQPIMT-INLPERCYCADVDYPLAVV--GTAGRGIVLYQLEGKPQEFKKTESPL 201
WD+ T + + D+D +++ G+ + I ++ ++G+ +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 150
Query: 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI 261
Q R + ++K + S ++ N + F H SN
Sbjct: 151 VSQVRVVP---NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN--------- 198
Query: 262 YAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMD 303
+N + P +A+ G +G W+ A+ + A D
Sbjct: 199 --INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT--IP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKC 102
L++ S D + W++ + + +P +S +G S V D DG A DKT++
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 103 WDLASNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD+A+ ++ Q H + V + K + +++GS DKT+K W ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKA--SMIISGSRDKTIKVWTIK 137
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWI------DDGTKVFMAGCDKT 99
+I+GS D ++ W ++ G+ + ++ G ++ V V + DD + AG DK
Sbjct: 121 MIISGSRDKTIKVWTIK--GQCLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 100 VKCWDLASNQ-SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN 158
VK W+L Q H++ + T +P+ T + + D + W+L + + T++
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTL--TASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Query: 159 LPERCYC 165
+ +
Sbjct: 236 AQDEVFS 242
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWD 104
+ ++ SWD +R W+V G+T + + G V+ V ID + ++G DKT+K W
Sbjct: 79 YALSASWDKTLRLWDV-ATGETYQRFV-GHKSDVMSVD-IDKKASMIISGSRDKTIKVWT 135
Query: 105 LASNQSMQVAQHDAPVKTCHWI---KAPNYTC-LMTGSWDKTLKFWDLRTPQ 152
+ + H+ V + KA + + +++ DK +K W+L Q
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/222 (18%), Positives = 79/222 (35%), Gaps = 25/222 (11%)
Query: 91 VFMAGCDKTVKCWDLASNQS------MQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
+ A DKT+ W L + H V+ C Y ++ SWDKTL+
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA--LSASWDKTLR 90
Query: 145 FWDLRTPQPIMT-INLPERCYCADVDYPLAVV--GTAGRGIVLYQLEGKPQEFKKTESPL 201
WD+ T + + D+D +++ G+ + I ++ ++G+ +
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDW 150
Query: 202 KYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGGAGGVQDI 261
Q R + ++K + S ++ N + F H SN
Sbjct: 151 VSQVRVVP---NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN--------- 198
Query: 262 YAVNGIVFHPVHGTLATVGSEGTFSFWDKDARTKLKPSEAMD 303
+N + P +A+ G +G W+ A+ + A D
Sbjct: 199 --INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 103/240 (42%), Gaps = 28/240 (11%)
Query: 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDV 82
+++ S+ C+ + + +I GS D+ VR W+V N + ++ E VL +
Sbjct: 167 RILTGHTGSVLCLQYD-----ERVIITGSSDSTVRVWDV--NTGEMLNTLIHHCEAVLHL 219
Query: 83 AWIDDGTKVFMAGC--DKTVKCWDLASNQSMQVAQ----HDAPVKTCHWIKAPNYTCLMT 136
+ ++G M C D+++ WD+AS + + + H A V + + +++
Sbjct: 220 RF-NNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF----DDKYIVS 271
Query: 137 GSWDKTLKFWDLRTPQPIMTINLPER-CYCADVDYPLAVVGTAGRGIVLYQLE-GKPQEF 194
S D+T+K W+ T + + T+N +R C L V G++ I L+ +E G
Sbjct: 272 ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV 331
Query: 195 KKTESPLKYQNRCIAIFRDKKKQPAGYGLGSVEGRVAIQYVNPANPKDNFTFKCHRSNGG 254
+ L RCI D K+ +G G ++ + ++P P + + G
Sbjct: 332 LEGHEELV---RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 386
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID 86
PP+ + +F + P+ + ++N RC G+ + + SE V +
Sbjct: 87 PPDGNAPPNSFYRALYPKIIQDIETIESNWRC------GRHSLQRIHCRSETSKGVYCLQ 140
Query: 87 -DGTKVFMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLK 144
D K+ D T+K WD + + ++ H V + + ++TGS D T++
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVR 196
Query: 145 FWDLRTPQPIMTI 157
WD+ T + + T+
Sbjct: 197 VWDVNTGEMLNTL 209
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVA 83
VV P D++ FS Q G+ D ++ ++ E K + ++ + VL A
Sbjct: 616 VVRPHTDAVYHACFSED--GQRIASCGA-DKTLQVFKAETGEKLLE--IKAHEDEVLCCA 670
Query: 84 WIDDGTKVFMAGCDKTVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDKT 142
+ D + DK VK W+ + + + +H V CH+ + ++ L TGS D
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 143 LKFWDLRTPQ 152
LK WDL +
Sbjct: 731 LKLWDLNQKE 740
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 10/140 (7%)
Query: 25 VSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAW 84
+ ED + C AFS F+ S D V+ W G+ + + SE V +
Sbjct: 659 IKAHEDEVLCCAFSTD---DRFIATCSVDKKVKIWN-SMTGELV-HTYDEHSEQVNCCHF 713
Query: 85 IDDGTKVFMA--GCDKTVKCWDLASNQSMQVA-QHDAPVKTCHWIKAPNYTCLMTGSWDK 141
+ + +A D +K WDL + H V C + +P+ L + S D
Sbjct: 714 TNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRF--SPDDKLLASCSADG 771
Query: 142 TLKFWDLRTPQPIMTINLPE 161
TLK WD + +IN+ +
Sbjct: 772 TLKLWDATSANERKSINVKQ 791
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 114/282 (40%), Gaps = 41/282 (14%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKT-----IPKSMQGMSEPVLDVAWI 85
+I +A+ P T L AGS+D+ V W E + + ++G V VAW
Sbjct: 60 AIRSVAWRPHT---SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 86 DDGTKVFMAGCDKTVKCWDLASNQSMQ-------VAQHDAPVKTCHWIKAPNYTCLMTGS 138
+DG ++A C + W +++S + + +H VK H I P+ L + S
Sbjct: 117 NDG--YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK--HVIWHPSEALLASSS 172
Query: 139 WDKTLKFWDLRTP--QPIMTINLPE-RCYCADVDYPLAVV----GTAGRGIVLYQLEGKP 191
+D T++ W + + +N E + +D D V G+ + +++ G
Sbjct: 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDD 232
Query: 192 QEFKKTESPLKYQNRCIAIFRDKKKQP---AGYGLGSVEGRVAIQYVNPANPKDNFTFKC 248
++ ++ + C AI D K+ +G + V V + + +K
Sbjct: 233 EDDQQ-------EWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKV 285
Query: 249 HRSNGGAGGVQDIYAVNGIVFHPVHG--TLATVGSEGTFSFW 288
GV Y +N + + ++G LAT G +G +FW
Sbjct: 286 FAKRALCHGV---YEINVVKWLELNGKTILATGGDDGIVNFW 324
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 19/116 (16%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
F I+ SWD +R W++ T K G V VA+ D ++ AG ++ +K W++
Sbjct: 90 FAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Query: 106 ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGS--------------WDKTLKFWD 147
A+ + W+ Y+ +M + WD LK W+
Sbjct: 148 LGECKFSSAEKE---NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 82/220 (37%), Gaps = 30/220 (13%)
Query: 86 DDGTKVFMAGC-DKTVKCWDLASNQSMQV--AQHDAPVKTCHWIK---APNYTCL-MTGS 138
++ + V ++G DKTV W L + H A H++ C ++ S
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 139 WDKTLKFWDLRTPQPIMT-INLPERCYCADV--DYPLAVVGTAGRGIVLYQLEGK---PQ 192
WDKTL+ WDLRT + Y D + A R I L+ + G+
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS 155
Query: 193 EFKKTESPLKYQNRCIAIFRDKKK-QPAGYGLGSV--EGRVAIQYVNPANPKDNFTFKCH 249
K+ S R I + K QP SV +GR+ + N + +TFK H
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW---NTNFQIRYTFKAH 212
Query: 250 RSNGGAGGVQDIYAVNGIVFHPVHGTLATVGSEGTFSFWD 289
SN VN + P +AT G + WD
Sbjct: 213 ESN-----------VNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 47 LIAGSWDNNVRCW---EVEPNGK-TIP-KSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVK 101
LI+GS D V W E E NG IP K++ G + V D+A + + DKT++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 102 CWDLASNQSM-QVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDL 148
WDL + + + H + V + + +P+ +++ ++ +K W++
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAF--SPDNRQILSAGAEREIKLWNI 147
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 94 AGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQP 153
G D +K W+ H++ V H +PN + TG DK L WD
Sbjct: 190 VGWDGRLKVWNTNFQIRYTFKAHESNVN--HLSISPNGKYIATGGKDKKLLIWD------ 241
Query: 154 IMTINLPERCYCA 166
I+ + P+R + A
Sbjct: 242 ILNLTYPQREFDA 254
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQ 112
D N+ W++ + +T+ + QG ++ + +DGTK++ G D TV+ WDL + +Q
Sbjct: 162 DGNIAVWDL--HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Query: 113 VAQHD 117
QHD
Sbjct: 220 --QHD 222
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106
LI G + + W++ I + + +A D F D + WDL
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 107 SNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ ++ Q +C I + + T L TG D T++ WDLR
Sbjct: 172 NQTLVRQFQGHTDGASCIDI-SNDGTKLWTGGLDNTVRSWDLR 213
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 85 IDDGTKVFMAGCDKTVKCWDLA--SNQS----MQVAQHDAPVKTCHWIKAPNYTCLMTGS 138
I + T+ G VK WD++ N+S + D +++C + P+ L+ G
Sbjct: 59 ISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL--PDGCTLIVGG 116
Query: 139 WDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAV 174
TL WDL P P + L A Y LA+
Sbjct: 117 EASTLSIWDLAAPTPRIKAELTSS---APACYALAI 149
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
I+ + F PS LI+ S D ++ W V+ P+++ G V D+A ID G V
Sbjct: 139 ITKLKFFPSGEA---LISSSQDMQLKIWSVKDGSN--PRTLIGHRATVTDIAIIDRGRNV 193
Query: 92 FMAGCDKTVKCWDLASNQSMQ 112
A D T++ W+ + ++
Sbjct: 194 LSASLDGTIRLWECGTGTTIH 214
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
I+ + F PS LI+ S D ++ W V+ P+++ G V D+A ID G V
Sbjct: 142 ITKLKFFPSGEA---LISSSQDMQLKIWSVKDGSN--PRTLIGHRATVTDIAIIDRGRNV 196
Query: 92 FMAGCDKTVKCWDLASNQSMQ 112
A D T++ W+ + ++
Sbjct: 197 LSASLDGTIRLWECGTGTTIH 217
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+SC F L ++ S D W++E +T + + V+ ++ D T++
Sbjct: 157 LSCCRF----LDDNQIVTSSGDTTCALWDIETGQQTTTFTGH--TGDVMSLSLAPD-TRL 209
Query: 92 FMAG-CDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
F++G CD + K WD+ Q H++ + + PN TGS D T + +DLR
Sbjct: 210 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF--PNGNAFATGSDDATCRLFDLR 267
Query: 150 TPQPIMT 156
Q +MT
Sbjct: 268 ADQELMT 274
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDV 82
+ + E I+ + F P+ GS D R +++ + + + S + + V
Sbjct: 231 QTFTGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 287
Query: 83 AWIDDGTKVFMAGCDK-TVKCWD-LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD 140
++ G ++ +AG D WD L ++++ +A HD V +C + + TGSWD
Sbjct: 288 SFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV-SCLGVTDDGMA-VATGSWD 344
Query: 141 KTLKFWD 147
LK W+
Sbjct: 345 SFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+SC F L ++ S D W++E +T + + V+ ++ D T++
Sbjct: 146 LSCCRF----LDDNQIVTSSGDTTCALWDIETGQQTTTFTGH--TGDVMSLSLAPD-TRL 198
Query: 92 FMAG-CDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
F++G CD + K WD+ Q H++ + + PN TGS D T + +DLR
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF--PNGNAFATGSDDATCRLFDLR 256
Query: 150 TPQPIMT 156
Q +MT
Sbjct: 257 ADQELMT 263
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDV 82
+ + E I+ + F P+ GS D R +++ + + + S + + V
Sbjct: 220 QTFTGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 83 AWIDDGTKVFMAGCDK-TVKCWD-LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD 140
++ G ++ +AG D WD L ++++ +A HD V +C + + TGSWD
Sbjct: 277 SFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV-SCLGVTDDGMA-VATGSWD 333
Query: 141 KTLKFWD 147
LK W+
Sbjct: 334 SFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+SC F L ++ S D W++E +T + + V+ ++ D T++
Sbjct: 146 LSCCRF----LDDNQIVTSSGDTTCALWDIETGQQTTTFTGH--TGDVMSLSLAPD-TRL 198
Query: 92 FMAG-CDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
F++G CD + K WD+ Q H++ + + PN TGS D T + +DLR
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF--PNGNAFATGSDDATCRLFDLR 256
Query: 150 TPQPIMT 156
Q +MT
Sbjct: 257 ADQELMT 263
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDV 82
+ + E I+ + F P+ GS D R +++ + + + S + + V
Sbjct: 220 QTFTGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 83 AWIDDGTKVFMAGCDK-TVKCWD-LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD 140
++ G ++ +AG D WD L ++++ +A HD V +C + + TGSWD
Sbjct: 277 SFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV-SCLGVTDDGMA-VATGSWD 333
Query: 141 KTLKFWD 147
LK W+
Sbjct: 334 SFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+SC F L ++ S D W++E +T + + V+ ++ D T++
Sbjct: 146 LSCCRF----LDDNQIVTSSGDTTCALWDIETGQQTTTFTGH--TGDVMSLSLAPD-TRL 198
Query: 92 FMAG-CDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
F++G CD + K WD+ Q H++ + + PN TGS D T + +DLR
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF--PNGNAFATGSDDATCRLFDLR 256
Query: 150 TPQPIMT 156
Q +MT
Sbjct: 257 ADQELMT 263
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDV 82
+ + E I+ + F P+ GS D R +++ + + + S + + V
Sbjct: 220 QTFTGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 83 AWIDDGTKVFMAGCDK-TVKCWD-LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD 140
++ G ++ +AG D WD L ++++ +A HD V +C + + TGSWD
Sbjct: 277 SFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV-SCLGVTDDGMA-VATGSWD 333
Query: 141 KTLKFWD 147
LK W+
Sbjct: 334 SFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+SC F L ++ S D W++E +T + + V+ ++ D T++
Sbjct: 146 LSCCRF----LDDNQIVTSSGDTTCALWDIETGQQTTTFTGH--TGDVMSLSLAPD-TRL 198
Query: 92 FMAG-CDKTVKCWDLASNQSMQV-AQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
F++G CD + K WD+ Q H++ + + PN TGS D T + +DLR
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF--PNGNAFATGSDDATCRLFDLR 256
Query: 150 TPQPIMT 156
Q +MT
Sbjct: 257 ADQELMT 263
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 8/127 (6%)
Query: 23 EVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDV 82
+ + E I+ + F P+ GS D R +++ + + + S + + V
Sbjct: 220 QTFTGHESDINAICFFPNGNA---FATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 83 AWIDDGTKVFMAGCDK-TVKCWD-LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWD 140
++ G ++ +AG D WD L ++++ +A HD V +C + + TGSWD
Sbjct: 277 SFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV-SCLGVTDDGMA-VATGSWD 333
Query: 141 KTLKFWD 147
LK W+
Sbjct: 334 SFLKIWN 340
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
I+C+ F + ++I G+ D +R ++ K + G V + + G V
Sbjct: 125 ITCLQFEDN-----YVITGADDKXIRVYD--SINKKFLLQLSGHDGGVWALKYAHGGILV 177
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT 150
D+TV+ WD+ V + H++ V+ ++ N ++TGS D TL W L
Sbjct: 178 -SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 151 PQPIMTINLPERCYCADVDYPLA 173
+ P+ + + DYPL
Sbjct: 237 ESSV-----PD--HGEEHDYPLV 252
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 64 NGKTIPK--SMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ-SMQVAQHDAPV 120
N K +P+ +++G V+ +D V DK ++ +D + + +Q++ HD V
Sbjct: 107 NPKFVPQRTTLRGHXTSVITCLQFEDNY-VITGADDKXIRVYDSINKKFLLQLSGHDGGV 165
Query: 121 KTCHW-IKAPNYTCLMTGSWDKTLKFWDLR 149
W +K + L++GS D+T++ WD++
Sbjct: 166 ----WALKYAHGGILVSGSTDRTVRVWDIK 191
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 21/147 (14%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
L++GS D VR W+++ T + LD+ + + D T+ W L
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 106 ASNQSM--QVAQHDAPVKTCHWIKAPNYT------------------CLMTGSWDKTLKF 145
S+ +HD P+ + P + +++GS+D TL
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 146 WDLRTPQPIMTIN-LPERCYCADVDYP 171
WD+ + + ++ +R Y D+
Sbjct: 295 WDVAQXKCLYILSGHTDRIYSTIYDHE 321
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 61 VEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPV 120
V P +I + G ++ + ++ DG +F A + + WD+++ S +V D
Sbjct: 309 VNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-DVHA 367
Query: 121 KTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGR 180
IK + L T SWD LK P ++ + PL + +A
Sbjct: 368 TMITGIKTTSKGDLFTVSWDDHLKV----VPAGGSGVDSSKAVANKLSSQPLGLAVSADG 423
Query: 181 GIVL---YQLEGKPQEFKKTESPLKYQNRCIAIFRDKKKQPAG 220
I + Y+ K TE P+ Y + C+A+ DK+ G
Sbjct: 424 DIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVG 466
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 31 SISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTK 90
+++ + F PS + +I+GS DN V +E P + ++ V V + DG+
Sbjct: 149 AMNSVDFKPSR--PFRIISGSDDNTVAIFEGPP--FKFKSTFGEHTKFVHSVRYNPDGSL 204
Query: 91 VFMAGCDKTVKCWD--------LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKT 142
G D T+ ++ + + S++ H V W +P+ T + + S DKT
Sbjct: 205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW--SPDGTKIASASADKT 262
Query: 143 LKFWDLRTPQPIMTINLPERC 163
+K W++ T + TI + R
Sbjct: 263 IKIWNVATLKVEKTIPVGTRI 283
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 33 SCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVF 92
SC+A S + F+ G D+ V +++ + K++ +E + VA+ ++G F
Sbjct: 452 SCVALSND---KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE-ITSVAFSNNG--AF 505
Query: 93 MAGCDKTVKCWDLASNQSMQVAQ------HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW 146
+ D++ K + + ++A H A V W +P+ L TGS D ++ W
Sbjct: 506 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW--SPDNVRLATGSLDNSVIVW 563
Query: 147 DLRTP--QPIM 155
++ P PI+
Sbjct: 564 NMNKPSDHPII 574
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 21 DFEVVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVL 80
D E+ + + SPS Y+ +G NVR W+ + ++ S PV
Sbjct: 51 DTEIYTEHSHQTTVAKTSPS---GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 107
Query: 81 DVAWIDDGTKVFMAG 95
D++W + ++ G
Sbjct: 108 DISWDSESKRIAAVG 122
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 24 VVSPPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTI-PKSMQGMSEPVLDV 82
+V P E I+ +AFS + FL+A V + V N + S + V V
Sbjct: 488 IVHPAE--ITSVAFSNN---GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 542
Query: 83 AWIDDGTKVFMAGCDKTVKCWDLASNQS----MQVAQHDAPVKTCHWIKAPNYTCLMTGS 138
+W D ++ D +V W++ ++ A + V + W+ N T +++
Sbjct: 543 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL---NETTIVSAG 599
Query: 139 WDKTLKFWDL 148
D +KFW++
Sbjct: 600 QDSNIKFWNV 609
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
I+C+ F + ++I G+ D +R ++ K + G V + + G V
Sbjct: 125 ITCLQFEDN-----YVITGADDKMIRVYD--SINKKFLLQLSGHDGGVWALKYAHGGILV 177
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQ-HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRT 150
D+TV+ WD+ V + H++ V+ ++ N ++TGS D TL W L
Sbjct: 178 -SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 151 PQPIMTINLPERCYCADVDYPLA 173
+ P+ + + DYPL
Sbjct: 237 ESSV-----PD--HGEEHDYPLV 252
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 34/177 (19%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
L++GS D VR W+++ T + LD+ + + D T+ W L
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 106 ASNQSM--QVAQHDAP--------------VKTCHWIKAPNYT----CLMTGSWDKTLKF 145
S+ +HD P V H + +++GS+D TL
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 146 WDL-----------RTPQPIMTINLPE--RCYCADVDYPLAVVGTAGRGIVLYQLEG 189
WD+ T + TI E RC A +D + + G ++Y L+G
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-GELMYTLQG 350
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 64 NGKTIPK--SMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQ-SMQVAQHDAPV 120
N K +P+ +++G V+ +D V DK ++ +D + + +Q++ HD V
Sbjct: 107 NPKFVPQRTTLRGHMTSVITCLQFEDNY-VITGADDKMIRVYDSINKKFLLQLSGHDGGV 165
Query: 121 KTCHW-IKAPNYTCLMTGSWDKTLKFWDLR 149
W +K + L++GS D+T++ WD++
Sbjct: 166 ----WALKYAHGGILVSGSTDRTVRVWDIK 191
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 47 LIAGSWDNNVRCWEVEPN------GKTIPKSMQGMSEPVLDVAWIDDGTKVFMAG-CDKT 99
LI GS D W+V G P G + VL ++ +F++G CD T
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPS---GHTADVLSLSINSLNANMFISGSCDTT 229
Query: 100 VKCWDL--ASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI 157
V+ WDL S H+ + + + P+ TGS D T + +D+RT +
Sbjct: 230 VRLWDLRITSRAVRTYHGHEGDINSVKFF--PDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287
Query: 158 NL-PER 162
N P+R
Sbjct: 288 NREPDR 293
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 27 PPEDSISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWID 86
P + ++ S ++L I+GS D VR W++ + + ++ G + V +
Sbjct: 201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAV-RTYHGHEGDINSVKFFP 259
Query: 87 DGTKVFMAGCDKTVKCWDLASNQSMQV 113
DG + D T + +D+ + +QV
Sbjct: 260 DGQRFGTGSDDGTCRLFDMRTGHQLQV 286
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 86 DDGTKVFMAGCDKTVKCWDLASNQSMQV------AQHDAPVKTCHWIKAPNYTCLMTGSW 139
D T++ D+T WD+ + Q + + + H A V + I + N ++GS
Sbjct: 168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS-INSLNANMFISGSC 226
Query: 140 DKTLKFWDLR-TPQPIMT 156
D T++ WDLR T + + T
Sbjct: 227 DTTVRLWDLRITSRAVRT 244
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
++++ S D + W + KT +++ V++ A+ +G V G D ++L
Sbjct: 80 WIVSASQDGRLIVWNALTSQKT--HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137
Query: 106 ASNQ--------SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPI 154
+S S + H +C ++ T L+TGS D+T WD+ T Q I
Sbjct: 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVP-DQETRLITGSGDQTCVLWDVTTGQRI 193
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 59/152 (38%), Gaps = 23/152 (15%)
Query: 57 RCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL--ASNQSMQVA 114
R +E N + + G LD+ ++ G + G D + +DL +S QS
Sbjct: 26 RVLGLELNKDRDVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDLENSSRQSYYTC 84
Query: 115 Q------------HDAPVKTCHWIKAPNYTCLMTGS-WDKTLKFWDLRTPQPIMTINLPE 161
+ H V+T W P+ T + T S +DKTLK WD T Q N E
Sbjct: 85 KAVCSIGRDHPDVHRYSVETVQWY--PHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE 142
Query: 162 RCYC-----ADVDYPLAVVGTAGRGIVLYQLE 188
Y + L VGT G + L L+
Sbjct: 143 TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 47 LIAGSWDNNVRCWEVEP---NGKTIPKS--MQGMSEPVLDVAWIDDGTKVF-MAGCDKTV 100
L++ S D+ V W++ GK + G S V DVAW +F D+ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 101 KCWDLASNQSMQ----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD SN + + V H A V C + L TGS DKT+ WDLR
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEV-NCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 47 LIAGSWDNNVRCWEVEP---NGKTIPKS--MQGMSEPVLDVAWIDDGTKVF-MAGCDKTV 100
L++ S D+ V W++ GK + G S V DVAW +F D+ +
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 101 KCWDLASNQSMQ----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD SN + + V H A V C + L TGS DKT+ WDLR
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEV-NCLSFNPYSEFILATGSADKTVALWDLR 306
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 2/113 (1%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSM--QGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
++ S V WE++ N I + V V+ + GT+ D +K WD
Sbjct: 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 105 LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTI 157
LA + + A TC + ++ S D + WD R P+P I
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI 208
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106
++A + DN+V W M+ E + VAWI +G + + V+ WD+
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 107 SNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ 152
+ ++ + H A V + W N L +GS + D+R +
Sbjct: 189 QQKRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAE 231
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
Y L +GS ++ +V + ++ G S+ V + W DG + G D V W
Sbjct: 211 YILSSGSRSGHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 269
Query: 105 LASNQSMQV-----AQHDAPVKTCHWIK-APNYTCLMTGSWDKTLKFWDL 148
A + V QH VK W N G+ D+ ++ W++
Sbjct: 270 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106
++A + DN+V W M+ E + VAWI +G + + V+ WD+
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 107 SNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ 152
+ ++ + H A V + W N L +GS + D+R +
Sbjct: 178 QQKRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAE 220
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
Y L +GS ++ +V + ++ G S+ V + W DG + G D V W
Sbjct: 200 YILSSGSRSGHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258
Query: 105 LASNQSMQV-----AQHDAPVKTCHWIK-APNYTCLMTGSWDKTLKFWDL 148
A + V QH VK W N G+ D+ ++ W++
Sbjct: 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPK-----SMQGMSEPVLDVAWIDDGTKVFM-AGCDKTV 100
+ +GS D V WE+ G +P +++G ++ V VAW V + AGCD +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 101 KCWDLASNQSMQVAQ---HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD+ + ++ H + + W + C T DK ++ + R
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC--TSCRDKRVRVIEPR 206
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 74 GMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWDL--------ASNQSMQVAQHDAPVKTCH 124
G + PVLD+AW V +G D TV W++ + + H V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 125 WIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN---LPERCYCADVDYPLAVVGTAGR 180
W L++ D + WD+ T ++T+ P+ Y D A++ T+ R
Sbjct: 139 WHPTAQ-NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ +A+ P+ Q L++ DN + W+V + + + V W DG +
Sbjct: 134 VGIVAWHPTA--QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDAP---VKTCHWIKAPNYTCLMTG---SWDKTLKF 145
+ DK V+ + + VA+ D P + H + L TG ++ +
Sbjct: 192 CTSCRDKRVRV--IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL 249
Query: 146 WDLR 149
WD +
Sbjct: 250 WDTK 253
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 11/113 (9%)
Query: 47 LIAGSWDNNVRCWEVEP---NGKTIPKS--MQGMSEPVLDVAWIDDGTKVF-MAGCDKTV 100
L++ S D+ + W++ GK + G + V DV+W +F D+ +
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 101 KCWDLASNQ----SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD SN S V H A V C + L TGS DKT+ WDLR
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEV-NCLSFNPYSEFILATGSADKTVALWDLR 304
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT-----IPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKT 99
+L++ S D+ + W++ K G + V DVAW +F D+
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 100 VKCWDLASNQ----SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ WD +N S V H A V C + L TGS DKT+ WDLR
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVN-CLSFNPYSEFILATGSADKTVALWDLR 310
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 87 DGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFW 146
DGT+ G D +VK WDL+ ++ + C T ++ D + W
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Query: 147 DLRTPQPIMTINLPERCYCADVDYPLAV 174
D R P+P I+ +CA P +V
Sbjct: 210 DTRKPKPATRID-----FCASDTIPTSV 232
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT-----IPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKT 99
+L++ S D+ + W++ K G + V DVAW +F D+
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 100 VKCWDLASNQ----SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ WD +N S V H A V C + L TGS DKT+ WDLR
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVN-CLSFNPYSEFILATGSADKTVALWDLR 308
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT-----IPKSMQGMSEPVLDVAWIDDGTKVF-MAGCDKT 99
+L++ S D+ + W++ K G + V DVAW +F D+
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 100 VKCWDLASNQ----SMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
+ WD +N S V H A V C + L TGS DKT+ WDLR
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEV-NCLSFNPYSEFILATGSADKTVALWDLR 312
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 134 LMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQ 186
L + WD L+FWD++T + I T+N+ +C D++ ++ G L +
Sbjct: 306 LCSAGWDGKLRFWDVKTKERITTLNM----HCDDIEIEEDILAVDEHGDSLAE 354
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLA 106
++A + DN+V W M+ E + VAWI +G + + V+ WD+
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 107 SNQSMQ-VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQ 152
+ ++ + H A V + W N L +GS + D+R +
Sbjct: 98 QQKRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAE 140
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 45 YFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
Y L +GS ++ +V + ++ G S+ V + W DG + G D V W
Sbjct: 120 YILSSGSRSGHIHHHDVRVAEHHVA-TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178
Query: 105 LASNQSMQV-----AQHDAPVKTCHWIK-APNYTCLMTGSWDKTLKFWDL 148
A + V QH VK W N G+ D+ ++ W++
Sbjct: 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 228
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 134 LMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVVGTAGRGIVLYQ 186
L + WD L+FWD++T + I T+N+ +C D++ ++ G L +
Sbjct: 316 LCSAGWDGKLRFWDVKTKERITTLNM----HCDDIEIEEDILAVDEHGDSLAE 364
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 75 MSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV---AQHDAPVKTCHWIKAPNY 131
+ EP+ AW D T++ + + V ++ + N+ +QV +H+ V W AP+
Sbjct: 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW--APDS 64
Query: 132 TCLMTGSWDKTLKFWDL--RTPQP---IMTINLPERCYCADVDYPLAVVGTAGRGIVLYQ 186
++T D+ W L RT +P I+ IN RC + VG+ R I +
Sbjct: 65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 124
Query: 187 LE 188
E
Sbjct: 125 FE 126
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 7/150 (4%)
Query: 35 MAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVF 92
+ FSP + ++ + GS D + C++ + K I + + + ++W+D K
Sbjct: 212 VEFSPDS-GEFVITVGS-DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD-SQKFA 268
Query: 93 MAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIK--APNYTCLMTGSWDKTLKFWDLRT 150
G D T++ WD+ +++ +Q D + A +++ S D TL F++L
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328
Query: 151 PQPIMTINLPERCYCADVDYPLAVVGTAGR 180
+ + TI+ + A PL GR
Sbjct: 329 DEVLKTISGHNKGITALTVNPLISGSYDGR 358
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 75 MSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQV---AQHDAPVKTCHWIKAPNY 131
+ EP+ AW D T++ + + V ++ + N+ +QV +H+ V W AP+
Sbjct: 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDW--APDS 64
Query: 132 TCLMTGSWDKTLKFWDL--RTPQP---IMTINLPERCYCADVDYPLAVVGTAGRGIVLYQ 186
++T D+ W L RT +P I+ IN RC + VG+ R I +
Sbjct: 65 NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 124
Query: 187 LE 188
E
Sbjct: 125 FE 126
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 7/150 (4%)
Query: 35 MAFSPSTLPQYFLIAGSWDNNVRCWEVEPNG--KTIPKSMQGMSEPVLDVAWIDDGTKVF 92
+ FSP + ++ + GS D + C++ + K I + + + ++W+D K
Sbjct: 212 VEFSPDS-GEFVITVGS-DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD-SQKFA 268
Query: 93 MAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIK--APNYTCLMTGSWDKTLKFWDLRT 150
G D T++ WD+ +++ +Q D + A +++ S D TL F++L
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328
Query: 151 PQPIMTINLPERCYCADVDYPLAVVGTAGR 180
+ + TI+ + A PL GR
Sbjct: 329 DEVLKTISGHNKGITALTVNPLISGSYDGR 358
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 72 MQGMSEPVLDVAWIDDGTKVFMAGC-DKTVKCWDL--------ASNQSMQVAQHDAPVKT 122
+ G + PVLD+AW V +G D TV W++ + + H V
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGI 136
Query: 123 CHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTIN---LPERCYCADVDYPLAVVGTAG 179
W L G D + WD+ T ++T+ P+ Y D A++ T+
Sbjct: 137 VAWHPTAQNVLLSAGX-DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 180 R 180
R
Sbjct: 196 R 196
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPK-----SMQGMSEPVLDVAWIDDGTKVFM-AGCDKTV 100
+ +GS D V WE+ G +P +++G ++ V VAW V + AG D +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 101 KCWDLASNQSMQVAQ---HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLR 149
WD+ + ++ H + + W + C T DK ++ + R
Sbjct: 157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC--TSCRDKRVRVIEPR 206
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 32 ISCMAFSPSTLPQYFLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKV 91
+ +A+ P+ Q L++ DN + W+V + + + V W DG +
Sbjct: 134 VGIVAWHPTA--QNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 92 FMAGCDKTVKCWDLASNQSMQVAQHDAP---VKTCHWIKAPNYTCLMTG---SWDKTLKF 145
+ DK V+ + + VA+ D P + H + L TG ++ +
Sbjct: 192 CTSCRDKRVRV--IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVAL 249
Query: 146 WDLR 149
WD +
Sbjct: 250 WDTK 253
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 21/127 (16%)
Query: 47 LIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFM-AGCDKTVKCWD- 104
+I+GSWD + W+ ++ ++Q + V D + F+ A DKT+K W
Sbjct: 117 VISGSWDKTAKVWK----EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172
Query: 105 -----LASNQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINL 159
S V +H A V H+I N D +K D T + T
Sbjct: 173 DKVIKTFSGIHNDVVRHLAVVDDGHFISCSN---------DGLIKLVDXHTGDVLRTYEG 223
Query: 160 PER-CYC 165
E YC
Sbjct: 224 HESFVYC 230
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 7/130 (5%)
Query: 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC--DKTVKCWDLAS--- 107
D +V+ ++V G+ + ++G PV VAW +A C D+ V W +
Sbjct: 34 DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93
Query: 108 NQSMQVAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF--WDLRTPQPIMTINLPERCYC 165
+S + A HD+ V + W L GS D + + + IN C
Sbjct: 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 153
Query: 166 ADVDYPLAVV 175
V + AVV
Sbjct: 154 NAVSWAPAVV 163
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDL 105
+L + S+D W+ + +++G V VAW G + DK+V W++
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Query: 106 ASNQSMQ----VAQHDAPVKTCHWIKAPNYTCLMTGSWDKTLKF 145
+ + H VK H + P+ L + S+D T+K
Sbjct: 135 DEEDEYECVSVLNSHTQDVK--HVVWHPSQELLASASYDDTVKL 176
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC--DKTVKCWDLASNQS 110
D ++ +EVE + ++ G PV V W +A C D V W + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89
Query: 111 MQV---AQHDAPVKTCHWIKAPNYTCLMTGSWD---KTLKFWDLRTPQPIM 155
Q+ A H A V + W L+ S D ++F + T PI+
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT-IPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
L++ S D+ +R W ++ + I ++G + VL + G K+ G D ++K W
Sbjct: 166 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 225
Query: 105 LASNQSMQVAQ 115
+ S + M +
Sbjct: 226 INSKRMMNAIK 236
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT-IPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
L++ S D+ +R W ++ + I ++G + VL + G K+ G D ++K W
Sbjct: 130 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 189
Query: 105 LASNQSMQVAQ 115
+ S + M +
Sbjct: 190 INSKRMMNAIK 200
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT-IPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
L++ S D+ +R W ++ + I ++G + VL + G K+ G D ++K W
Sbjct: 129 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 188
Query: 105 LASNQSMQVAQ 115
+ S + M +
Sbjct: 189 INSKRMMNAIK 199
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT-IPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
L++ S D+ +R W ++ + I ++G + VL + G K+ G D ++K W
Sbjct: 129 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 188
Query: 105 LASNQSMQVAQ 115
+ S + M +
Sbjct: 189 INSKRMMNAIK 199
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 46 FLIAGSWDNNVRCWEVEPNGKT-IPKSMQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWD 104
L++ S D+ +R W ++ + I ++G + VL + G K+ G D ++K W
Sbjct: 125 LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR 184
Query: 105 LASNQSMQVAQ 115
+ S + M +
Sbjct: 185 INSKRMMNAIK 195
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC--DKTVKCWDLASNQS 110
D ++ +EVE + ++ G PV V W +A C D V W + +
Sbjct: 32 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91
Query: 111 MQV---AQHDAPVKTCHWIKAPNYTCLMTGSWD---KTLKFWDLRTPQPIM 155
Q+ A H A V + W L+ S D ++F + T PI+
Sbjct: 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC--DKTVKCWDLASNQS 110
D ++ +EVE + ++ G PV V W +A C D V W + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRW 89
Query: 111 MQV---AQHDAPVKTCHWIKAPNYTCLMTGSWD---KTLKFWDLRTPQPIM 155
Q+ A H A V + W L+ S D ++F + T PI+
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPII 140
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC--DKTVKCWDLASNQS 110
D ++ +EVE + ++ G PV V W +A C D V W + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89
Query: 111 MQV---AQHDAPVKTCHWIKAPNYTCLMTGSWD---KTLKFWDLRTPQPIM 155
Q+ A H A V + W L+ S D ++F + T PI+
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 8/111 (7%)
Query: 53 DNNVRCWEVEPNGKTIPKSMQGMSEPVLDVAWIDDGTKVFMAGC--DKTVKCWDLASNQS 110
D ++ +EVE + ++ G PV V W +A C D V W + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89
Query: 111 MQV---AQHDAPVKTCHWIKAPNYTCLMTGSWD---KTLKFWDLRTPQPIM 155
Q+ A H A V + W L+ S D ++F + T PI+
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII 140
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 15/61 (24%)
Query: 116 HDAPVKTCHWIKAPNYTCLMTGSWDKTLKFWDLRTPQPIMTINLPERCYCADVDYPLAVV 175
HD+ + C W+ A ++ L+ +LR+P +I RCY + YPL ++
Sbjct: 97 HDSDIDCCRWVSA-----------EEILQASNLRSPLVAESI----RCYQSGQRYPLEMI 141
Query: 176 G 176
G
Sbjct: 142 G 142
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 72 MQGMSEPVLDVAWIDDGTKVFMAGCDKTVKCWDLASNQSMQVAQHDAPVKTCHWIKAPNY 131
+ G P+ V + +G +F D + W S ++ D T I +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVW--YSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 132 TCL-MTGSWDKTLKFWDLRTPQPIMTINLP 160
T +TGS D ++K WD+ Q + T P
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWKSP 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,841,021
Number of Sequences: 62578
Number of extensions: 524327
Number of successful extensions: 1571
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 352
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)